BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11092
(278 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C2N|A Chain A, Structure Of Human Mitochondrial Malonyltransferase
pdb|2C2N|B Chain B, Structure Of Human Mitochondrial Malonyltransferase
Length = 339
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/162 (46%), Positives = 104/162 (64%), Gaps = 1/162 (0%)
Query: 109 SIIMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQ 168
S+++FPGQG+Q VGMG L+ P ++L+ A +L +DLL+L L GP L++T+H Q
Sbjct: 27 SVLLFPGQGSQVVGMGRGLL-NYPRVRELYAAARRVLGYDLLELSLHGPQETLDRTVHCQ 85
Query: 169 AAVFVCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQA 228
A+FV S+ A+EKL +P+ IENCVA GFS+GE AL F+G ++ L +KIR++A
Sbjct: 86 PAIFVASLAAVEKLHHLQPSVIENCVAAAGFSVGEFAALVFAGAMEFAEGLYAVKIRAEA 145
Query: 229 MQLACEIAPGGMASVMYGPDSQLNLAMKRAKEWCVDRGIPEP 270
MQ A E P GM SV+ P S+ N A A+E C GI P
Sbjct: 146 MQEASEAVPSGMLSVLGQPQSKFNFACLEAREHCKSLGIENP 187
>pdb|2G1H|A Chain A, Structure Of E.Coli Fabd Complexed With Glycerol
pdb|2G2O|A Chain A, Structure Of E.Coli Fabd Complexed With Sulfate
pdb|2G2Y|A Chain A, Structure Of E.Coli Fabd Complexed With Malonate
pdb|2G2Z|A Chain A, Structure Of E.coli Fabd Complexed With Malonyl-coa
Length = 308
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 88/150 (58%), Gaps = 3/150 (2%)
Query: 111 IMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAA 170
+FPGQG+Q VGM D+ + P+ ++ F EASA L +DL L +GPA ELNKT Q A
Sbjct: 5 FVFPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDLWALTQQGPAEELNKTWQTQPA 64
Query: 171 VFVCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQ 230
+ S+ AL ++ +++ +A G SLGE +AL +GV D+ A+ L+++R + MQ
Sbjct: 65 LLTASV-ALYRVWQQQGGKAPAMMA--GHSLGEYSALVCAGVIDFADAVRLVEMRGKFMQ 121
Query: 231 LACEIAPGGMASVMYGPDSQLNLAMKRAKE 260
A G MA+++ D+ + A + A E
Sbjct: 122 EAVPEGTGAMAAIIGLDDASIAKACEEAAE 151
>pdb|1MLA|A Chain A, The Escherichia Coli Malonyl-Coa:acyl Carrier Protein
Transacylase At 1.5-Angstroms Resolution. Crystal
Structure Of A Fatty Acid Synthase Component
Length = 309
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 88/150 (58%), Gaps = 3/150 (2%)
Query: 111 IMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAA 170
+FPGQG+Q VGM D+ + P+ ++ F EASA L +DL L +GPA ELNKT Q A
Sbjct: 6 FVFPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDLWALTQQGPAEELNKTWQTQPA 65
Query: 171 VFVCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQ 230
+ S+ AL ++ +++ +A G SLGE +AL +GV D+ A+ L+++R + MQ
Sbjct: 66 LLTASV-ALYRVWQQQGGKAPAMMA--GHSLGEYSALVCAGVIDFADAVRLVEMRGKFMQ 122
Query: 231 LACEIAPGGMASVMYGPDSQLNLAMKRAKE 260
A G MA+++ D+ + A + A E
Sbjct: 123 EAVPEGTGAMAAIIGLDDASIAKACEEAAE 152
>pdb|2H1Y|A Chain A, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein
Transacylase (Mcat) From Helicobacter Pylori
pdb|2H1Y|B Chain B, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein
Transacylase (Mcat) From Helicobacter Pylori
Length = 321
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 3/155 (1%)
Query: 111 IMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAA 170
++FPGQG+Q +GMG + +AK+LFE AS LK D+ K E L ++ + Q A
Sbjct: 17 LLFPGQGSQCIGMGKSFYEGHTLAKELFERASNALKVDMKKTLFE-ENELLKESAYTQPA 75
Query: 171 VFVCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQ 230
+++ S A + L ++ ++ A LG SLGE++A++ SG D+E AL+L R + MQ
Sbjct: 76 IYLVSYIAYQLLNKQANGGLKPVFA-LGHSLGEVSAVSLSGALDFEKALKLTHQRGKMMQ 134
Query: 231 LACEIAPGGMASVM-YGPDSQLNLAMKRAKEWCVD 264
AC M V+ +S L+L + WC +
Sbjct: 135 EACANKDASMMVVLGVSEESLLSLCQRTKNVWCAN 169
>pdb|3HJV|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of An Acyl
Carrier Protein S-Malonyltransferase From Vibrio
Cholerae O1 Biovar Eltor Str. N16961
pdb|3HJV|B Chain B, 1.7 Angstrom Resolution Crystal Structure Of An Acyl
Carrier Protein S-Malonyltransferase From Vibrio
Cholerae O1 Biovar Eltor Str. N16961
Length = 312
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 76/137 (55%), Gaps = 9/137 (6%)
Query: 111 IMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAA 170
I+FPGQG+Q VG DL + + K F EAS +L +DL L +GP +LN+T Q A
Sbjct: 11 IVFPGQGSQAVGXLADLAEQYAVVKQTFAEASEVLGYDLWALVQDGPVEDLNQTFRTQPA 70
Query: 171 VFVCSIG---ALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQ 227
+ S+ ++L E+PA + G SLGE +AL +GV D++ A++L+++R Q
Sbjct: 71 LLAASVAIWRVWQQLGLEQPAVLA------GHSLGEYSALVCAGVIDFKQAIKLVELRGQ 124
Query: 228 AMQLACEIAPGGMASVM 244
Q A G +++
Sbjct: 125 LXQQAVPAGTGAXYAII 141
>pdb|3H0P|A Chain A, 2.0 Angstrom Crystal Structure Of An Acyl Carrier Protein
S- Malonyltransferase From Salmonella Typhimurium.
pdb|3H0P|B Chain B, 2.0 Angstrom Crystal Structure Of An Acyl Carrier Protein
S- Malonyltransferase From Salmonella Typhimurium
Length = 312
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 111 IMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAA 170
+FPGQG+Q VG + P+ ++ F EASA L +DL L +GPA ELNKT Q A
Sbjct: 9 FVFPGQGSQSVGXLAEXAANYPIVEETFAEASAALGYDLWALTQQGPAEELNKTWQTQPA 68
Query: 171 VFVCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQ 230
+ S+ AL ++ +++ A G SLGE +AL +GV ++ A+ L++ R + Q
Sbjct: 69 LLTASV-ALWRVWQQQGGKXPALXA--GHSLGEYSALVCAGVINFADAVRLVEXRGKFXQ 125
Query: 231 LACEIAPGGMASVMYGPDSQLNLAMKRAKE 260
A GG ++++ D+ + A + + E
Sbjct: 126 EAVPEGTGGXSAIIGLDDASIAKACEESAE 155
>pdb|3PTW|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
Transacylase From Clostridium Perfringens Atcc 13124
Length = 336
Score = 84.0 bits (206), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 4/156 (2%)
Query: 111 IMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAA 170
+F GQG Q+VGMG + +K++F+ +S L D+ +LC P LNKT Q A
Sbjct: 6 FLFAGQGAQYVGMGKEFFDNFEESKEVFKRSSEALGIDMEELCFNDPEGLLNKTEFTQPA 65
Query: 171 VFVCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQ 230
+ ++ L L + + +C G SLGE +AL SG ++E ++L+K R + MQ
Sbjct: 66 IITTNMAILTALDKLGVKSHISC----GLSLGEYSALIHSGAINFEDGVKLVKKRGKFMQ 121
Query: 231 LACEIAPGGMASVMYGPDSQLNLAMKRAKEWCVDRG 266
A GGM +V+ Q++ ++++ + + G
Sbjct: 122 EAVAEGIGGMVAVLRMTPEQVDEIIEKSSPYGIVEG 157
>pdb|3EZO|A Chain A, Crystal Structure Of Acyl-Carrier-Protein S-
Malonyltransferase From Burkholderia Pseudomallei 1710b
Length = 318
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 77/133 (57%), Gaps = 4/133 (3%)
Query: 112 MFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAAV 171
+FPGQG+Q VGM + + + ++ +EAS L D+ KL +GPA ELN T + Q V
Sbjct: 14 VFPGQGSQSVGML-NAFADVAVVRETLDEASDALGQDIGKLIADGPADELNLTTNTQP-V 71
Query: 172 FVCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQL 231
+ + A + ++ A + VA G SLGE TAL +G + AL L++ R+QAMQ
Sbjct: 72 MLTAAYACYRAWQQAGGAQPSIVA--GHSLGEYTALVAAGAIAFRDALPLVRFRAQAMQT 129
Query: 232 ACEIAPGGMASVM 244
A + GGMA+++
Sbjct: 130 AVPVGVGGMAAIL 142
>pdb|3IM8|A Chain A, Crystal Structure Of Mcat From Streptococcus Pneumoniae
Length = 307
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 81/155 (52%), Gaps = 9/155 (5%)
Query: 111 IMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAA 170
+F GQG Q++GMG D P+ K+ + AS +L +DL + ++ +LN+T + Q A
Sbjct: 6 FLFAGQGAQYLGMGRDFYDQYPIVKETIDRASQVLGYDL-RYLIDTEEDKLNQTRYTQPA 64
Query: 171 VFVCSIGALEKLREE--RPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQA 228
+ S+ L+E+ +P + VA G SLGE +AL SG D+E A+ L+ R
Sbjct: 65 ILATSVAIYRLLQEKGYQP----DMVA--GLSLGEYSALVASGALDFEDAVALVAKRGAY 118
Query: 229 MQLACEIAPGGMASVMYGPDSQLNLAMKRAKEWCV 263
M+ A G M +V+ P + A ++A E V
Sbjct: 119 MEEAAPADSGKMVAVLNTPVEVIEEACQKASELGV 153
>pdb|3K89|A Chain A, Structure Of X. Oryzae Pv. Oryzae Kacc10331, Xoo0880(Fabd)
Complexed With Glycerol
pdb|3R97|A Chain A, Crystal Structure Of Malonyl-Coa:acyl Carrier Protein
Transacylase (Fabd), Xoo0880, From Xanthomonas Oryzae
Pv. Oryzae Kacc10331
Length = 314
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 74/146 (50%), Gaps = 11/146 (7%)
Query: 108 TSIIMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHA 167
T +FPGQG+Q +GM +L + P ++ F EAS DL L GP LN+T +
Sbjct: 5 TLAFVFPGQGSQSLGMLAELSELHPQIRETFAEASEGAGVDLWALSQGGPEEMLNRTEYT 64
Query: 168 QAAVFVCSIGALEKL----REERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIK 223
Q A+ + A+ +L R +RPA + G SLGE TAL +GV L++
Sbjct: 65 QPALLAAGV-AVWRLWTAQRGQRPALLA------GHSLGEYTALVAAGVLSLHDGAHLVR 117
Query: 224 IRSQAMQLACEIAPGGMASVMYGPDS 249
+R Q MQ A G MA+V+ D+
Sbjct: 118 LRGQFMQAAAPAGVGAMAAVLGAEDA 143
>pdb|3QAT|A Chain A, Crystal Structure Of
Acyl-Carrier-Protein-S-Malonyltransferase From
Bartonella Henselae
pdb|3QAT|B Chain B, Crystal Structure Of
Acyl-Carrier-Protein-S-Malonyltransferase From
Bartonella Henselae
Length = 318
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 72/133 (54%), Gaps = 2/133 (1%)
Query: 113 FPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAAVF 172
FPGQG+Q +GMG L + A+ +FEE L L + EGPA L T +AQ A+
Sbjct: 11 FPGQGSQLIGMGKVLTEQFVAARMVFEEVDDALSEKLSDIIFEGPADVLTLTANAQPALM 70
Query: 173 VCSIGALEKLREERPAAIENCVATL-GFSLGEITALTFSGVFDYETALELIKIRSQAMQL 231
S+ A+ ++ E+ +E V + G SLGE +AL +G F L++IR AMQ
Sbjct: 71 AVSM-AVIRVMEQLGLNVEKKVKFVAGHSLGEYSALCAAGTFSLTDTARLLRIRGNAMQA 129
Query: 232 ACEIAPGGMASVM 244
A + G MA+++
Sbjct: 130 AVAVGEGSMAALI 142
>pdb|3G87|A Chain A, Crystal Structure Of Malonyl Coa-Acyl Carrier Protein
Transacylase From Burkholderia Pseudomallei Using Dried
Seaweed As Nucleant Or Protease
Length = 394
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 11/144 (7%)
Query: 109 SIIMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQ 168
+ MFPGQG+Q GMGG L DL +A A+L + + LC++ P EL +T Q
Sbjct: 7 NTFMFPGQGSQAKGMGGALFDRF---ADLTAQADAVLGYSIRALCVDDPRDELGRTQFTQ 63
Query: 169 AAVFVCSIGALEKLRE-ERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQ 227
A++V + AL + E + +A G SLGE AL +G FD+ET L+L+ R++
Sbjct: 64 PALYV--VNALTYYAKCEDSGETPDFLA--GHSLGEFNALLAAGCFDFETGLKLVARRAE 119
Query: 228 AMQLACEIAPGGMASVMYGPDSQL 251
M A + G MA+++ Q+
Sbjct: 120 LMSQARD---GAMAAIVNASREQI 140
>pdb|3RGI|A Chain A, Trans-Acting Transferase From Disorazole Synthase
Length = 286
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 72/133 (54%), Gaps = 10/133 (7%)
Query: 112 MFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAAV 171
MFPGQG+Q GMG L P L A +L + + LC + P L++T Q A+
Sbjct: 5 MFPGQGSQAKGMGRALFDAFPA---LTARADGVLGYSIRALCQDDPDQRLSQTQFTQPAL 61
Query: 172 FVCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQL 231
+V + AL L+ A + +A G SLGE +AL +GVFD+ET L L+K R + M
Sbjct: 62 YV--VNALSYLKRREEEAPPDFLA--GHSLGEFSALFAAGVFDFETGLALVKKRGELM-- 115
Query: 232 ACEIAPGGMASVM 244
+ GGMA+V+
Sbjct: 116 -GDARGGGMAAVI 127
>pdb|3SBM|A Chain A, Trans-Acting Transferase From Disorazole Synthase In
Complex With Acetate
Length = 281
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 72/133 (54%), Gaps = 10/133 (7%)
Query: 112 MFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAAV 171
MFPGQG+Q GMG L P L A +L + + LC + P L++T Q A+
Sbjct: 5 MFPGQGSQAKGMGRALFDAFPA---LTARADGVLGYSIRALCQDDPDQRLSQTQFTQPAL 61
Query: 172 FVCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQL 231
+V + AL L+ A + +A G SLGE +AL +GVFD+ET L L+K R + M
Sbjct: 62 YV--VNALSYLKRREEEAPPDFLA--GHSLGEFSALFAAGVFDFETGLALVKKRGELM-- 115
Query: 232 ACEIAPGGMASVM 244
+ GGMA+V+
Sbjct: 116 -GDARGGGMAAVI 127
>pdb|2CUY|A Chain A, Crystal Structure Of Malonyl Coa-acyl Carrier Protein
Transacylase From Thermus Thermophilus Hb8
pdb|2CUY|B Chain B, Crystal Structure Of Malonyl Coa-acyl Carrier Protein
Transacylase From Thermus Thermophilus Hb8
Length = 305
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 85/169 (50%), Gaps = 9/169 (5%)
Query: 112 MFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAAV 171
+FPGQG+ VGMG L + P AK++ + A A L LLKL EGP L T + Q A+
Sbjct: 5 LFPGQGSHRVGMGRALYEASPAAKEVLDRAEAALP-GLLKLMWEGPEEALTLTENQQPAL 63
Query: 172 FVCSIGALEKLREE--RPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAM 229
A E +P A+ G SLGE TA +G + E AL L+++R + M
Sbjct: 64 LAAGYAAYRAFLEAGGKPPAL-----AAGHSLGEWTAHVAAGTLELEDALRLVRLRGRYM 118
Query: 230 QLACEIAPGGMASVMYGPDSQLNLAMKRAKEWCVDRGIPEPELSSISGR 278
Q A + G MA+V+ P ++ A++ E + PE + ISGR
Sbjct: 119 QEAVPVGEGAMAAVLKLPLEEIQKALE-GLEGVEIANLNAPEQTVISGR 166
>pdb|3IM9|A Chain A, Crystal Structure Of Mcat From Staphylococcus Aureus
Length = 316
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 79/171 (46%), Gaps = 18/171 (10%)
Query: 105 PRDTSI-IMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNK 163
PR + + I+FPGQG Q VGM DL A ++ A+ L FD+L+ +L +
Sbjct: 7 PRGSHMAIIFPGQGAQKVGMAQDLFNNNDQATEILTSAAKTLDFDILETMFTDEEGKLGE 66
Query: 164 TIHAQAAVFVCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIK 223
T + Q A+ S L L+ P T+G SLGE ++L + V +E A+++++
Sbjct: 67 TENTQPALLTHSSALLAALKNLNPD------FTMGHSLGEYSSLVAADVLSFEDAVKIVR 120
Query: 224 IRSQAMQLACEIAPGGMASVMYGPDSQLNLAMKRAKEWC----VDRGIPEP 270
R Q M A G MA+V L L + E C D I EP
Sbjct: 121 KRGQLMAQAFPTGVGSMAAV-------LGLDFDKVDEICKSLSSDDKIIEP 164
>pdb|3TQE|A Chain A, Structure Of The Malonyl Coa-Acyl Carrier Protein
Transacylase (Fabd) From Coxiella Burnetii
Length = 316
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 66/136 (48%), Gaps = 9/136 (6%)
Query: 112 MFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAAV 171
+FPGQG+Q +G +L P+ + F++AS+ L +DL L GP L++T Q A+
Sbjct: 11 VFPGQGSQHLGXLAELGLQQPIVLETFQQASSALAYDLWALVQHGPQERLDQTQFTQPAL 70
Query: 172 FVCSIGAL---EKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQA 228
+ E L +P G SLGE AL +G +E A++L++ R Q
Sbjct: 71 LTADVAIFRCWEALGGPKPQ------VXAGHSLGEYAALVCAGALKFEEAVKLVEKRGQY 124
Query: 229 MQLACEIAPGGMASVM 244
Q A + G +++
Sbjct: 125 XQEAVPVGEGAXGAII 140
>pdb|2CDH|4 Chain 4, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|5 Chain 5, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|6 Chain 6, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|7 Chain 7, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|8 Chain 8, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|9 Chain 9, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|M Chain M, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|N Chain N, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|O Chain O, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|P Chain P, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|Q Chain Q, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|R Chain R, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 305
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 67/146 (45%), Gaps = 9/146 (6%)
Query: 110 IIMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQA 169
+++ PGQG Q G D + LP A D S + DL + A E+ T AQ
Sbjct: 4 VLVAPGQGAQTPGFLTDWL-ALPGAADRVAAWSDAIGLDLAHFGTKADADEIRDTSVAQP 62
Query: 170 AVFVCSIGALEKLREE-RPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQA 228
+ I + L P A+ G S+GEITA F+GV D AL L++ R A
Sbjct: 63 LLVAAGILSAAALGTGFTPGAVA------GHSVGEITAAVFAGVLDDTAALSLVRRRGLA 116
Query: 229 MQLACEIAPGGMASVMYGPDSQLNLA 254
M A + GM S + G D ++++A
Sbjct: 117 MAEAAAVTETGM-SALLGGDPEVSVA 141
>pdb|2CF2|B Chain B, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|K Chain K, Architecture Of Mammalian Fatty Acid Synthase
Length = 304
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 67/146 (45%), Gaps = 9/146 (6%)
Query: 110 IIMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQA 169
+++ PGQG Q G D + LP A D S + DL + A E+ T AQ
Sbjct: 3 VLVAPGQGAQTPGFLTDWL-ALPGAADRVAAWSDAIGLDLAHFGTKADADEIRDTSVAQP 61
Query: 170 AVFVCSIGALEKLREE-RPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQA 228
+ I + L P A+ G S+GEITA F+GV D AL L++ R A
Sbjct: 62 LLVAAGILSAAALGTGFTPGAVA------GHSVGEITAAVFAGVLDDTAALSLVRRRGLA 115
Query: 229 MQLACEIAPGGMASVMYGPDSQLNLA 254
M A + GM S + G D ++++A
Sbjct: 116 MAEAAAVTETGM-SALLGGDPEVSVA 140
>pdb|1NM2|A Chain A, "malonyl-Coa:acp Transacylase"
Length = 317
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 68/152 (44%), Gaps = 11/152 (7%)
Query: 110 IIMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQA 169
+++ PGQG Q G D + LP A D S + DL + A E+ T AQ
Sbjct: 4 VLVAPGQGAQTPGFLTDWL-ALPGAADRVAAWSDAIGLDLAHFGTKADADEIRDTSVAQP 62
Query: 170 AVFVCSIGALEKLREER-------PAAIENCVATLGFSLGEITALTFSGVFDYETALELI 222
+ I + L + P VA G S+GEITA F+GV D AL L+
Sbjct: 63 LLVAAGILSAAALGTQTSVADATGPGFTPGAVA--GHSVGEITAAVFAGVLDDTAALSLV 120
Query: 223 KIRSQAMQLACEIAPGGMASVMYGPDSQLNLA 254
+ R AM A + GM S + G D ++++A
Sbjct: 121 RRRGLAMAEAAAVTETGM-SALLGGDPEVSVA 151
>pdb|2QJ3|A Chain A, Mycobacterium Tuberculosis Fabd
pdb|2QJ3|B Chain B, Mycobacterium Tuberculosis Fabd
Length = 322
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 4/149 (2%)
Query: 105 PRDTSII--MFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELN 162
PR + +I + PGQG+Q GM ++ LP A D S DL +L E+
Sbjct: 16 PRGSHMIALLAPGQGSQTEGMLSPWLQ-LPGAADQIAAWSKAADLDLARLGTTASTEEIT 74
Query: 163 KTIHAQAAVFVCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELI 222
T AQ + ++ A ++L A ++ + G S+GEI A +GV + A+ L
Sbjct: 75 DTAVAQPLIVAATLLAHQELARRCVLAGKDVIVA-GHSVGEIAAYAIAGVIAADDAVALA 133
Query: 223 KIRSQAMQLACEIAPGGMASVMYGPDSQL 251
R M AC P GM++V+ G ++++
Sbjct: 134 ATRGAEMAKACATEPTGMSAVLGGDETEV 162
>pdb|2QC3|A Chain A, Crystal Structure Of Mcat From Mycobacterium Tuberculosis
Length = 303
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 2/141 (1%)
Query: 111 IMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAA 170
++ PGQG+Q GM ++ LP A D S DL +L E+ T AQ
Sbjct: 5 LLAPGQGSQTEGMLSPWLQ-LPGAADQIAAWSKAADLDLARLGTTASTEEITDTAVAQPL 63
Query: 171 VFVCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQ 230
+ ++ A ++L A ++ + G S+GEI A +GV + A+ L R M
Sbjct: 64 IVAATLLAHQELARRCVLAGKDVIVA-GHSVGEIAAYAIAGVIAADDAVALAATRGAEMA 122
Query: 231 LACEIAPGGMASVMYGPDSQL 251
AC P GM++V+ G ++++
Sbjct: 123 KACATEPTGMSAVLGGDETEV 143
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 50.1 bits (118), Expect = 1e-06, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 17/145 (11%)
Query: 110 IIMFPGQGTQFVGMGGDLIKTLPM----AKDLFEEASAILKFDLLKLCLEGP-ASELNKT 164
+ +FPGQG+Q+ GMG +L+ + P+ + E + + + + + + P A L++
Sbjct: 535 VFLFPGQGSQWAGMGAELLSSSPVFAGKIRACDESMAPMQDWKVSDVLRQAPGAPGLDRV 594
Query: 165 IHAQAAVFVCSIGALEKLREE--RPAAIENCVATLGFSLGEITALTFSGVFDYETALELI 222
Q +F + E R PAA+ +G S GEI A +G E A +L+
Sbjct: 595 DVVQPVLFAVMVSLAELWRSYGVEPAAV------VGHSQGEIAAAHVAGALTLEDAAKLV 648
Query: 223 KIRSQAMQ-LACEIAPGGMASVMYG 246
RS+ M+ L+ E GGMA+V G
Sbjct: 649 VGRSRLMRSLSGE---GGMAAVALG 670
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 48.5 bits (114), Expect = 4e-06, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 20/140 (14%)
Query: 109 SIIMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAI----LKFDLLKLCLEGPASELNKT 164
++ FPGQG Q GMG ++ A+ +++ A L F +L + + P S +
Sbjct: 1348 TVYAFPGQGIQHKGMGMEVRARSKAARKVWDSADKFTRETLGFSVLHVVRDNPTSLIASG 1407
Query: 165 IH-------------AQAAVFVCSIGALEKLREERPAAIENCVATLGFSLGEITALT-FS 210
+H Q A+ + + ++RE+ A +E +A G S+GE TAL S
Sbjct: 1408 VHYHHPDGVLFLTQFTQVAMATVAAAQVAEMREQ-GAFVEGAIAC-GHSVGEYTALACVS 1465
Query: 211 GVFDYETALELIKIRSQAMQ 230
GV++ E LE++ R M
Sbjct: 1466 GVYELEALLEVVFHRGSKMH 1485
>pdb|4AMO|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 421
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 10/112 (8%)
Query: 157 PASELNKTIHAQAAVFVCSIGALEKLRE--ERPAAIENCVATLGFSLGEITALTFSGVFD 214
PA ++ + AQ A+ S+ + L RP V LG SLGE+ AL+++G D
Sbjct: 141 PAEPVDTAV-AQPAIIADSLAGIRWLDRLGARP------VGALGHSLGELAALSWAGALD 193
Query: 215 YETALELIKIRSQAMQLACEIAPGGMASVMYGPDSQLNLAMKRAKEWCVDRG 266
+ L L + R +AM +A E AP GM S+ + LA VD G
Sbjct: 194 ADDTLALARARGEAMSVATE-APSGMLSLRADLAAARELAAGTGAVVAVDNG 244
>pdb|4AMN|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
pdb|4AMP|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 421
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 157 PASELNKTIHAQAAVFVCSIGALEKLRE--ERPAAIENCVATLGFSLGEITALTFSGVFD 214
PA ++ + AQ A+ S+ + L RP V LG SLGE+ AL+++G D
Sbjct: 141 PAEPVDTAV-AQPAIIADSLAGIRWLDRLGARP------VGALGHSLGELAALSWAGALD 193
Query: 215 YETALELIKIRSQAMQLACEIAPGGMASVMYGPDSQLNLAMKRAKEWCVDRG 266
+ L L + R +AM A E AP GM S+ + LA VD G
Sbjct: 194 ADDTLALARARGEAMSAATE-APSGMLSLRADLAAARELAAGTGAVVAVDNG 244
>pdb|4AMM|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 401
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 157 PASELNKTIHAQAAVFVCSIGALEKLRE--ERPAAIENCVATLGFSLGEITALTFSGVFD 214
PA ++ + AQ A+ S+ + L RP V LG SLGE+ AL+++G D
Sbjct: 138 PAEPVDTAV-AQPAIIADSLAGIRWLDRLGARP------VGALGHSLGELAALSWAGALD 190
Query: 215 YETALELIKIRSQAMQLACEIAPGGMASVMYGPDSQLNLAMKRAKEWCVDRG 266
+ L L + R +AM A E AP GM S+ + LA VD G
Sbjct: 191 ADDTLALARARGEAMSAATE-APSGMLSLRADLAAARELAAGTGAVVAVDNG 241
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 10/123 (8%)
Query: 112 MFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILK--FDLLKLCLEGPASELNKTIHAQA 169
+FPGQG Q+ G DL++ + D + L D L A L++ Q
Sbjct: 556 VFPGQGAQWQGXARDLLRESQVFADSIRDCERALAPHVDWSLTDLLSGARPLDRVDVVQP 615
Query: 170 AVFVC--SIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQ 227
A+F S+ AL + PAA+ +G S GEI A +G E A +L+ +RS+
Sbjct: 616 ALFAVXVSLAALWRSHGVEPAAV------VGHSQGEIAAAHVAGALTLEDAAKLVAVRSR 669
Query: 228 AMQ 230
++
Sbjct: 670 VLR 672
>pdb|2JFD|A Chain A, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|B Chain B, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|C Chain C, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|D Chain D, Structure Of The Mat Domain Of Human Fas
Length = 425
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 11/133 (8%)
Query: 115 GQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLL--KLCLEGPASELNKTIHAQAAVF 172
G GTQ+ GMG L++ + A+ F L +L L S + +H+ ++
Sbjct: 100 GMGTQWRGMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLSTDESTFDDIVHSFVSLT 159
Query: 173 VCSIGALEKLR--EERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQ 230
IG ++ L RP I +G SLGE+ G E A+ R Q ++
Sbjct: 160 AIQIGLIDLLSCMGLRPDGI------VGHSLGEVACGYADGCLSQEEAVLAAYWRGQCIK 213
Query: 231 LACEIAPGGMASV 243
A + PG MA+V
Sbjct: 214 EA-HLPPGAMAAV 225
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 11/133 (8%)
Query: 115 GQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDL--LKLCLEGPASELNKTIHAQAAVF 172
G GTQ+ GMG L++ + A+ F L +L L S + +H+ ++
Sbjct: 500 GMGTQWRGMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLSTDESTFDDIVHSFVSLT 559
Query: 173 VCSIGALEKLR--EERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQ 230
IG ++ L RP I +G SLGE+ G E A+ R Q ++
Sbjct: 560 AIQIGLIDLLSCMGLRPDGI------VGHSLGEVACGYADGCLSQEEAVLAAYWRGQCIK 613
Query: 231 LACEIAPGGMASV 243
A + PG MA+V
Sbjct: 614 EA-HLPPGAMAAV 625
>pdb|2JFK|A Chain A, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|B Chain B, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|C Chain C, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|D Chain D, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
Length = 433
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 11/133 (8%)
Query: 115 GQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLL--KLCLEGPASELNKTIHAQAAVF 172
G GTQ+ GMG L++ + A+ F L +L L S + +H+ ++
Sbjct: 100 GMGTQWRGMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLSTDESTFDDIVHSFVSLT 159
Query: 173 VCSIGALEKLR--EERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQ 230
IG ++ L RP I +G SLGE+ G E A+ R Q ++
Sbjct: 160 AIQIGLIDLLSCMGLRPDGI------VGHSLGEVACGYADGCLSQEEAVLAAYWRGQCIK 213
Query: 231 LACEIAPGGMASV 243
A + PG MA+V
Sbjct: 214 EA-HLPPGAMAAV 225
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Query: 108 TSIIMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILK----FDLLKLCLEGPASELNK 163
+ +F GQG+Q GMG DL KT A+D++ A K F +L + + P +N
Sbjct: 1661 VTTFVFTGQGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNP---VNL 1717
Query: 164 TIH 166
TIH
Sbjct: 1718 TIH 1720
>pdb|2UVA|G Chain G, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|H Chain H, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|I Chain I, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|J Chain J, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|K Chain K, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVA|L Chain L, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Beta Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVC|G Chain G, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|H Chain H, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|I Chain I, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|J Chain J, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|K Chain K, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVC|L Chain L, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Beta Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 2060
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 112 MFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILK----FDLLKLCLEGPASELNKTIH 166
+F GQG+Q GMG DL T P+AK++++ A + F ++ + P EL T+H
Sbjct: 1675 VFTGQGSQEQGMGMDLYATSPVAKEVWDRADKHFRENYGFSIIDIVKNNP-KEL--TVH 1730
>pdb|2PFF|B Chain B, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|E Chain E, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|H Chain H, Structural Insights Of Yeast Fatty Acid Synthase
Length = 2006
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 116 QGTQFVGMGGDLIKTLPMAKDLFEEASAILK----FDLLKLCLEGPASELNKTIH 166
QG+Q GMG DL KT A+D++ A K F +L + + P +N TIH
Sbjct: 1624 QGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNP---VNLTIH 1675
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 41/99 (41%), Gaps = 20/99 (20%)
Query: 175 SIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQLACE 234
S+ ++ LR +R AI C AT SLGEI V + E QL
Sbjct: 63 SVLRIQPLRVQRDEAIYECTAT--NSLGEINTSAKLSVLEEE-------------QL--- 104
Query: 235 IAPGGMASVMYGPDSQLNLAMKRAKEWCVDRGIPEPELS 273
P G S+ GP ++ + A C G P+PE+S
Sbjct: 105 --PPGFPSIDMGPQLKVVEKARTATMLCAAGGNPDPEIS 141
>pdb|3TZW|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Orthorhombic Apoform At 2.6 A
pdb|3TZX|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In Tetragonal Apo Form At 2.3 A
pdb|3TZX|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In Tetragonal Apo Form At 2.3 A
pdb|3TZY|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Palmitoylated Form At 2.2 A
pdb|3TZY|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Palmitoylated Form At 2.2 A
pdb|3TZZ|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Carboxypalmitoylated Form At 2.5 A
pdb|3TZZ|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Carboxypalmitoylated Form At 2.5 A
Length = 491
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 22/130 (16%)
Query: 110 IIMFPGQGTQFVGMGGDLIKTLPMAKDLF----EEASAI----LKFDLLKLCLEGPASEL 161
+ + G G Q MG K+L + ++F E+ A+ L + +L+L L+
Sbjct: 142 VWVLAGFGAQHRKMG----KSLYLRNEVFAAWIEKVDALVQDELGYSVLELILDDAQDYG 197
Query: 162 NKTIHAQAAVFVCSIGALEKLREE--RPAAIENCVATLGFSLGEITALTFSGVFDYETAL 219
+T Q +F I E LR +PAA+ +G SLGE + F+G A
Sbjct: 198 IET--TQVTIFAIQIALGELLRHHGAKPAAV------IGQSLGEAASAYFAGGLSLRDAT 249
Query: 220 ELIKIRSQAM 229
I RS M
Sbjct: 250 RAICSRSHLM 259
>pdb|3NWC|A Chain A, Crystal Structure Of The Pyrococcus Furiosus Smc Protein
Hinge Domain
pdb|3NWC|B Chain B, Crystal Structure Of The Pyrococcus Furiosus Smc Protein
Hinge Domain
Length = 189
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 215 YETALELIKIRSQAMQLACEIAPGGMASVMYGPDSQL-NLAMKRAKEWCVDR 265
Y T ELIK++ +A LA E+A G A + D + A+K KE + R
Sbjct: 37 YGTLAELIKVKDEAYALAIEVALGNRADNVVVEDELVAEKAIKYLKEHKLGR 88
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 20/99 (20%)
Query: 175 SIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQLACE 234
S+ ++ LR +R AI C AT SLGEI T+ +L + +
Sbjct: 64 SVLRIQPLRVQRDEAIYECTAT--NSLGEIN-----------TSAKLSVLEEDQL----- 105
Query: 235 IAPGGMASVMYGPDSQLNLAMKRAKEWCVDRGIPEPELS 273
P G ++ GP ++ + A C G P+PE+S
Sbjct: 106 --PSGFPTIDMGPQLKVVEKGRTATMLCAAGGNPDPEIS 142
>pdb|3VPE|A Chain A, Crystal Structure Of Metallo-beta-lactamase Smb-1
pdb|3VQZ|A Chain A, Crystal Structure Of Metallo-beta-lactamase, Smb-1, In A
Complex With Mercaptoacetic Acid
Length = 262
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 99 LRPKTDPRDTSIIMFPGQGTQFVGMGGDLIKTLPMA 134
+ PK+DP+ S+ FPG G+L+K P+A
Sbjct: 106 VSPKSDPQFGSLSNFPGSAKVRAVADGELVKLGPLA 141
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 20/99 (20%)
Query: 175 SIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQLACE 234
S+ ++ LR R AI CVA+ ++GEI+ T L +R +
Sbjct: 63 SVLRIQPLRTPRDEAIYECVAS--NNVGEISVST-----------RLTVLREDQI----- 104
Query: 235 IAPGGMASVMYGPDSQLNLAMKRAKEWCVDRGIPEPELS 273
P G ++ GP ++ + A C G P+PE++
Sbjct: 105 --PRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEIT 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,625,112
Number of Sequences: 62578
Number of extensions: 278271
Number of successful extensions: 566
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 512
Number of HSP's gapped (non-prelim): 41
length of query: 278
length of database: 14,973,337
effective HSP length: 98
effective length of query: 180
effective length of database: 8,840,693
effective search space: 1591324740
effective search space used: 1591324740
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)