Query psy11092
Match_columns 278
No_of_seqs 236 out of 1405
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 17:44:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11092.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11092hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00698 Acyl_transf_1: Acyl t 100.0 4.3E-37 9.4E-42 284.6 18.2 159 110-278 1-164 (318)
2 COG0331 FabD (acyl-carrier-pro 100.0 7.1E-37 1.5E-41 281.4 16.3 170 107-278 2-173 (310)
3 TIGR00128 fabD malonyl CoA-acy 100.0 5.1E-36 1.1E-40 272.6 20.5 167 108-278 2-170 (290)
4 PLN02752 [acyl-carrier protein 100.0 1.1E-35 2.4E-40 278.1 21.3 176 102-278 33-216 (343)
5 TIGR02816 pfaB_fam PfaB family 100.0 1.5E-34 3.3E-39 282.5 19.2 217 43-278 116-365 (538)
6 TIGR03131 malonate_mdcH malona 100.0 1.1E-33 2.3E-38 258.9 19.4 159 109-278 1-159 (295)
7 smart00827 PKS_AT Acyl transfe 100.0 2.1E-33 4.7E-38 256.5 19.4 159 113-278 1-165 (298)
8 TIGR02813 omega_3_PfaA polyket 100.0 3.2E-33 6.9E-38 309.2 22.2 213 46-278 533-763 (2582)
9 KOG2926|consensus 100.0 8.4E-30 1.8E-34 231.2 12.3 173 105-278 60-240 (386)
10 KOG1202|consensus 99.9 6.2E-27 1.3E-31 236.0 12.9 226 43-278 429-663 (2376)
11 COG3321 Polyketide synthase mo 99.9 1.3E-26 2.8E-31 243.0 13.9 229 44-278 439-694 (1061)
12 cd07198 Patatin Patatin-like p 85.4 5.5 0.00012 33.2 8.2 47 172-222 10-56 (172)
13 cd07219 Pat_PNPLA1 Patatin-lik 81.3 7.8 0.00017 37.2 8.2 53 171-223 23-75 (382)
14 COG1752 RssA Predicted esteras 80.7 4.6 0.0001 37.2 6.4 42 172-217 23-64 (306)
15 cd07205 Pat_PNPLA6_PNPLA7_NTE1 78.5 7.2 0.00016 32.5 6.4 47 173-223 13-59 (175)
16 cd07207 Pat_ExoU_VipD_like Exo 78.5 7 0.00015 33.0 6.4 47 173-223 12-58 (194)
17 cd07209 Pat_hypo_Ecoli_Z1214_l 76.1 7.9 0.00017 33.7 6.2 39 172-214 10-48 (215)
18 cd07210 Pat_hypo_W_succinogene 75.5 9.9 0.00022 33.4 6.6 47 172-222 12-58 (221)
19 cd07224 Pat_like Patatin-like 75.4 11 0.00025 33.3 7.1 50 171-223 10-60 (233)
20 cd07223 Pat_PNPLA5-mammals Pat 74.6 9.3 0.0002 36.8 6.5 55 170-224 19-73 (405)
21 cd07227 Pat_Fungal_NTE1 Fungal 73.5 10 0.00022 34.5 6.4 42 173-219 23-65 (269)
22 cd07229 Pat_TGL3_like Triacylg 72.1 11 0.00024 36.3 6.5 47 172-223 95-141 (391)
23 cd07225 Pat_PNPLA6_PNPLA7 Pata 71.5 13 0.00027 34.6 6.6 45 173-222 28-73 (306)
24 cd07228 Pat_NTE_like_bacteria 70.0 14 0.0003 30.9 6.1 43 173-219 13-55 (175)
25 cd07221 Pat_PNPLA3 Patatin-lik 69.9 18 0.00039 32.6 7.1 52 172-223 12-63 (252)
26 cd07213 Pat17_PNPLA8_PNPLA9_li 69.3 13 0.00028 33.9 6.1 53 173-225 15-67 (288)
27 cd07220 Pat_PNPLA2 Patatin-lik 67.7 31 0.00068 31.0 8.1 51 171-221 15-65 (249)
28 PRK10279 hypothetical protein; 66.3 9.6 0.00021 35.3 4.6 38 172-213 17-55 (300)
29 PF06259 Abhydrolase_8: Alpha/ 65.9 34 0.00074 29.2 7.6 27 103-129 15-41 (177)
30 cd07208 Pat_hypo_Ecoli_yjju_li 64.5 11 0.00023 33.8 4.5 40 173-215 11-51 (266)
31 cd07212 Pat_PNPLA9 Patatin-lik 60.4 30 0.00066 32.1 6.8 50 175-224 14-64 (312)
32 PF09752 DUF2048: Uncharacteri 60.0 41 0.00088 31.9 7.6 31 105-136 90-120 (348)
33 cd07204 Pat_PNPLA_like Patatin 59.6 39 0.00085 30.0 7.2 51 172-222 11-61 (243)
34 cd07218 Pat_iPLA2 Calcium-inde 59.2 34 0.00075 30.6 6.8 48 172-221 12-59 (245)
35 PRK11126 2-succinyl-6-hydroxy- 59.0 12 0.00025 32.1 3.6 32 178-213 56-87 (242)
36 cd07222 Pat_PNPLA4 Patatin-lik 58.8 50 0.0011 29.4 7.7 40 172-211 11-50 (246)
37 cd07206 Pat_TGL3-4-5_SDP1 Tria 58.2 31 0.00068 32.0 6.4 34 173-210 82-115 (298)
38 cd07231 Pat_SDP1-like Sugar-De 56.9 37 0.0008 31.9 6.6 46 172-222 80-125 (323)
39 cd07211 Pat_PNPLA8 Patatin-lik 53.2 54 0.0012 30.0 7.2 53 174-226 22-76 (308)
40 PF00975 Thioesterase: Thioest 52.1 19 0.0004 30.7 3.7 29 179-210 56-84 (229)
41 TIGR03695 menH_SHCHC 2-succiny 51.8 59 0.0013 26.8 6.8 18 194-211 72-89 (251)
42 PF03959 FSH1: Serine hydrolas 51.4 16 0.00034 31.7 3.1 27 178-209 93-119 (212)
43 cd07230 Pat_TGL4-5_like Triacy 51.3 49 0.0011 32.2 6.8 44 173-221 86-129 (421)
44 PRK06765 homoserine O-acetyltr 50.6 19 0.00041 34.5 3.9 30 178-210 150-179 (389)
45 PRK08775 homoserine O-acetyltr 47.5 22 0.00047 32.9 3.7 29 179-210 128-156 (343)
46 TIGR03056 bchO_mg_che_rel puta 47.1 20 0.00044 31.0 3.2 17 194-210 97-113 (278)
47 cd07232 Pat_PLPL Patain-like p 46.9 60 0.0013 31.4 6.7 46 173-223 80-125 (407)
48 cd07199 Pat17_PNPLA8_PNPLA9_li 46.7 71 0.0015 28.4 6.7 34 193-226 35-69 (258)
49 PF06821 Ser_hydrolase: Serine 46.3 17 0.00037 30.6 2.5 17 193-209 56-72 (171)
50 PF12697 Abhydrolase_6: Alpha/ 46.1 29 0.00062 28.2 3.9 29 178-210 56-84 (228)
51 PLN02894 hydrolase, alpha/beta 45.8 85 0.0018 30.0 7.5 17 194-210 178-194 (402)
52 cd07217 Pat17_PNPLA8_PNPLA9_li 44.8 33 0.00071 32.4 4.4 35 193-227 42-76 (344)
53 PF01764 Lipase_3: Lipase (cla 44.5 17 0.00037 28.5 2.2 16 195-210 67-82 (140)
54 TIGR02240 PHA_depoly_arom poly 42.9 29 0.00062 30.6 3.6 18 194-211 93-110 (276)
55 PRK13604 luxD acyl transferase 42.1 34 0.00075 31.8 4.0 18 194-211 110-127 (307)
56 PLN02824 hydrolase, alpha/beta 41.9 30 0.00066 30.8 3.6 17 194-210 104-120 (294)
57 COG4188 Predicted dienelactone 40.6 24 0.00052 33.7 2.8 31 194-224 161-191 (365)
58 COG3208 GrsT Predicted thioest 38.8 54 0.0012 29.6 4.6 14 194-207 76-89 (244)
59 PRK07581 hypothetical protein; 38.7 23 0.00051 32.4 2.4 17 194-210 126-142 (339)
60 PRK00870 haloalkane dehalogena 37.1 39 0.00085 30.3 3.6 28 179-210 106-133 (302)
61 PRK06489 hypothetical protein; 37.0 26 0.00056 32.7 2.4 21 190-210 152-172 (360)
62 PRK11460 putative hydrolase; P 36.5 70 0.0015 27.9 5.0 17 194-210 105-121 (232)
63 cd00741 Lipase Lipase. Lipase 36.1 28 0.0006 28.1 2.2 16 195-210 31-46 (153)
64 cd00519 Lipase_3 Lipase (class 36.1 25 0.00054 30.5 2.1 16 195-210 131-146 (229)
65 PRK10673 acyl-CoA esterase; Pr 35.9 46 0.00099 28.5 3.7 18 194-211 83-100 (255)
66 PF06057 VirJ: Bacterial virul 35.9 86 0.0019 27.2 5.2 90 108-217 3-93 (192)
67 PRK11071 esterase YqiA; Provis 35.8 46 0.00099 28.2 3.6 20 194-213 63-82 (190)
68 PRK03592 haloalkane dehalogena 35.7 42 0.00092 29.8 3.6 28 179-210 84-111 (295)
69 TIGR01392 homoserO_Ac_trn homo 35.4 44 0.00095 30.9 3.7 29 179-210 117-145 (351)
70 TIGR01250 pro_imino_pep_2 prol 35.3 42 0.00091 28.6 3.4 18 194-211 98-115 (288)
71 PLN02965 Probable pheophorbida 34.2 43 0.00093 29.2 3.3 17 194-210 74-90 (255)
72 PRK00175 metX homoserine O-ace 33.5 48 0.001 31.3 3.6 29 179-210 137-165 (379)
73 TIGR03101 hydr2_PEP hydrolase, 33.0 58 0.0013 29.5 4.0 28 179-210 90-117 (266)
74 PLN02679 hydrolase, alpha/beta 32.9 49 0.0011 30.9 3.6 14 194-207 157-170 (360)
75 TIGR03343 biphenyl_bphD 2-hydr 32.5 44 0.00096 29.2 3.1 18 194-211 103-120 (282)
76 TIGR02427 protocat_pcaD 3-oxoa 32.3 49 0.0011 27.4 3.2 19 194-212 81-99 (251)
77 PF05990 DUF900: Alpha/beta hy 32.2 2.8E+02 0.006 24.4 8.1 35 174-209 75-110 (233)
78 TIGR01738 bioH putative pimelo 32.1 58 0.0013 26.9 3.6 17 194-210 67-83 (245)
79 PF00756 Esterase: Putative es 31.1 35 0.00077 29.5 2.2 17 194-210 117-133 (251)
80 PLN02578 hydrolase 30.9 55 0.0012 30.4 3.6 17 194-210 154-170 (354)
81 PF12695 Abhydrolase_5: Alpha/ 30.7 39 0.00085 26.1 2.2 18 194-211 63-80 (145)
82 cd07216 Pat17_PNPLA8_PNPLA9_li 30.5 89 0.0019 28.7 4.8 35 193-227 43-78 (309)
83 KOG2551|consensus 30.4 49 0.0011 29.5 2.8 29 178-211 95-123 (230)
84 cd00707 Pancreat_lipase_like P 30.2 33 0.00071 31.0 1.9 19 194-212 114-132 (275)
85 PRK10349 carboxylesterase BioH 30.2 62 0.0013 27.9 3.6 17 194-210 76-92 (256)
86 PRK10566 esterase; Provisional 29.2 35 0.00075 29.4 1.8 17 194-210 109-125 (249)
87 cd07215 Pat17_PNPLA8_PNPLA9_li 28.8 94 0.002 28.8 4.7 35 193-227 41-82 (329)
88 COG3319 Thioesterase domains o 28.4 59 0.0013 29.4 3.2 27 179-208 55-81 (257)
89 TIGR03611 RutD pyrimidine util 28.3 70 0.0015 26.8 3.5 18 194-211 82-99 (257)
90 cd01819 Patatin_and_cPLA2 Pata 28.2 1.1E+02 0.0024 25.0 4.6 35 174-210 12-46 (155)
91 PLN00215 predicted protein; Pr 27.7 22 0.00048 26.5 0.2 18 104-121 49-66 (110)
92 PRK14875 acetoin dehydrogenase 27.6 68 0.0015 29.3 3.6 17 194-210 199-215 (371)
93 PF00561 Abhydrolase_1: alpha/ 27.3 71 0.0015 26.4 3.3 17 194-210 46-62 (230)
94 PHA02857 monoglyceride lipase; 26.8 43 0.00094 29.3 2.0 17 194-210 99-115 (276)
95 PF10230 DUF2305: Uncharacteri 26.7 43 0.00094 30.1 2.0 17 194-210 86-102 (266)
96 PF07819 PGAP1: PGAP1-like pro 26.7 46 0.00099 29.3 2.1 17 194-210 87-103 (225)
97 KOG2564|consensus 24.9 37 0.00081 31.6 1.2 19 193-211 147-165 (343)
98 COG0596 MhpC Predicted hydrola 24.5 48 0.001 27.0 1.8 17 194-210 90-106 (282)
99 PLN02211 methyl indole-3-aceta 23.7 52 0.0011 29.4 1.9 17 194-210 89-105 (273)
100 PF11187 DUF2974: Protein of u 23.5 55 0.0012 28.9 2.0 22 194-215 86-107 (224)
101 PF05728 UPF0227: Uncharacteri 22.7 1.1E+02 0.0024 26.2 3.6 17 194-210 61-77 (187)
102 PLN02298 hydrolase, alpha/beta 22.5 58 0.0013 29.6 2.1 17 194-210 136-152 (330)
103 PF12000 Glyco_trans_4_3: Gkyc 22.3 61 0.0013 27.5 1.9 12 188-200 63-74 (171)
104 COG2945 Predicted hydrolase of 21.3 83 0.0018 27.6 2.6 36 177-214 90-125 (210)
105 COG4370 Uncharacterized protei 21.0 87 0.0019 29.6 2.8 32 105-149 328-359 (412)
106 cd07214 Pat17_isozyme_like Pat 21.0 1.7E+02 0.0037 27.5 4.9 35 193-227 44-85 (349)
107 PF06028 DUF915: Alpha/beta hy 20.6 67 0.0015 29.0 2.0 20 189-209 101-120 (255)
108 KOG3847|consensus 20.5 39 0.00084 31.9 0.4 19 194-212 243-261 (399)
109 PLN03090 auxin-responsive fami 20.0 1.3E+02 0.0029 23.4 3.3 39 109-148 44-82 (104)
No 1
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=100.00 E-value=4.3e-37 Score=284.56 Aligned_cols=159 Identities=35% Similarity=0.531 Sum_probs=138.2
Q ss_pred EEEeCCCCcChhhhHHHHHhhCchHHHHHHHHHHHh----CCCHHHHhhcCCC-ccchhhhhhhHHHHHHHHHHHHHHHh
Q psy11092 110 IIMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAIL----KFDLLKLCLEGPA-SELNKTIHAQAAVFVCSIGALEKLRE 184 (278)
Q Consensus 110 aflFpGqGaq~~gmg~~L~~~~p~~r~~i~~~~~~l----g~~l~~~l~~~~~-~~l~~~~~~qpai~a~q~a~~~ll~~ 184 (278)
+|+|||||+||+|||++||+.+|.|++.+++|++++ |+++.+++.+++. ..+.++.++||+||++|++++++|++
T Consensus 1 vFlFpGQGsq~~gMg~~L~~~~p~f~~~~~~~~~~l~~~~g~~l~~~l~~~~~~~~l~~~~~~qpai~~~~~al~~~l~~ 80 (318)
T PF00698_consen 1 VFLFPGQGSQYPGMGRDLYENNPVFRETIDRCDEILKELLGFSLLELLFEGPESEDLNDTEYAQPAIFAIQVALARLLRS 80 (318)
T ss_dssp EEEE--TTS--TTTTHHHHHH-HHHHHHHHHHHHHHTSHHTS-HHHHHHHTTHCHHHTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEECCcchhhHhHHHHHHHcChhhHHHHHhhhhhhhcccccchhhhhhcccccccccchheecchhhhhhhhhhhhhcc
Confidence 699999999999999999999999999999999885 7999999888775 67899999999999999999999999
Q ss_pred cCCCccccCcEEEecChhHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhcCCCCeeEEEecCCHHHHHHHHHhcCCceEE
Q psy11092 185 ERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQLACEIAPGGMASVMYGPDSQLNLAMKRAKEWCVD 264 (278)
Q Consensus 185 ~~p~gi~p~~~v~GhSlGEiaAa~aAG~ls~~da~~lv~~Rg~l~~~~~~~~~G~M~av~~~~~~~v~~~~~~~~~~v~i 264 (278)
+||+| ++++|||+||++|+|++|+|+++|++++++.|+++|.+.. .+|+|++|.. +..+.... ..++++|
T Consensus 81 ---~Gi~P-~~v~GhSlGE~aA~~aaG~ls~e~a~~lv~~R~~~m~~~~--~~g~m~av~~---~~~~~~~~-~~~~v~i 150 (318)
T PF00698_consen 81 ---WGIKP-DAVIGHSLGEYAALVAAGALSLEDALRLVYERARLMDEAA--PPGAMLAVRG---EEEEEKLA-LPPDVEI 150 (318)
T ss_dssp ---TTHCE-SEEEESTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHS--TSEEEEEEES---HHHHHHHH-TTTTEEE
T ss_pred ---ccccc-ceeeccchhhHHHHHHCCccchhhhhhhHHHHHHHHHHhh--hcccccchhh---hHHhhhcc-cccccee
Confidence 67776 9999999999999999999999999999999999999874 7899999999 33333333 5667999
Q ss_pred EeeeCCCcEEEecC
Q psy11092 265 RGIPEPELSSISGR 278 (278)
Q Consensus 265 A~~Nsp~~~VisG~ 278 (278)
|++|+|+++||||+
T Consensus 151 a~~Ns~~q~visG~ 164 (318)
T PF00698_consen 151 ANINSPRQVVISGE 164 (318)
T ss_dssp EEEEETTEEEEEEE
T ss_pred eeeccccccccCCC
Confidence 99999999999995
No 2
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=100.00 E-value=7.1e-37 Score=281.37 Aligned_cols=170 Identities=38% Similarity=0.543 Sum_probs=159.2
Q ss_pred CcEEEEeCCCCcChhhhHHHHHhhCchHHHHHHHHHHHhCCCHHHHhhcCCCccchhhhhhhHHHHHHHHHHHHHHHhcC
Q psy11092 107 DTSIIMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAAVFVCSIGALEKLREER 186 (278)
Q Consensus 107 ~~vaflFpGqGaq~~gmg~~L~~~~p~~r~~i~~~~~~lg~~l~~~l~~~~~~~l~~~~~~qpai~a~q~a~~~ll~~~~ 186 (278)
.+++|+|||||+||.|||++|++.+|.+++.++++++.+++++.+++.+++++.+..+.++||++++++++.++.|++.+
T Consensus 2 ~~~A~~FpGQGsQ~~gMg~~l~~~~~~a~~~~~~a~~~l~~~l~~i~~~~p~~~L~~T~~tQPal~~~s~a~~~~l~~~~ 81 (310)
T COG0331 2 SKTAFVFPGQGSQSLGMGKDLYENSPEAKETFDEADEALGFDLWALVFEGPEEELNLTQNTQPALLLVSLAAYRVLAEQG 81 (310)
T ss_pred CcceEEeCCchHHHHHhHHHHHhccHHHHHHHHHHHHHhcccHHHHhcCCCHHHhcccchhhHHHHHHHHHHHHHHHHhc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999855
Q ss_pred CCccccCcEEEecChhHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhcCCCCeeEEEecCCHHHHHHHHHhcCC--ceEE
Q psy11092 187 PAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQLACEIAPGGMASVMYGPDSQLNLAMKRAKE--WCVD 264 (278)
Q Consensus 187 p~gi~p~~~v~GhSlGEiaAa~aAG~ls~~da~~lv~~Rg~l~~~~~~~~~G~M~av~~~~~~~v~~~~~~~~~--~v~i 264 (278)
. +++| +.++|||+|||+|++++|+++++|+++++..||.+|++......|+|.++.+.+.+.++++|+.... -|++
T Consensus 82 ~-~~~p-~~~aGHSlGEysAl~~ag~~~~ed~~~Lv~~RG~~M~~a~p~~~g~Maav~gl~~e~v~~~~~~~~~~~~v~i 159 (310)
T COG0331 82 L-GVKP-DFVAGHSLGEYSALAAAGVLSFEDALKLVRKRGKLMQEAVPRGEGGMAAVLGLDDEQVEKACEEAAQGTVVEI 159 (310)
T ss_pred C-CCCC-ceeecccHhHHHHHHHcccccHHHHHHHHHHHHHHHHHHccCCCccHHHHcCCCHHHHHHHHHHhccCCeEEE
Confidence 3 3454 9999999999999999999999999999999999999998777899999999999999999988754 3999
Q ss_pred EeeeCCCcEEEecC
Q psy11092 265 RGIPEPELSSISGR 278 (278)
Q Consensus 265 A~~Nsp~~~VisG~ 278 (278)
+++|+|.|+||||.
T Consensus 160 aN~N~~~QiVIsG~ 173 (310)
T COG0331 160 ANYNSPGQIVISGT 173 (310)
T ss_pred eeeCCCCcEEEECC
Confidence 99999999999995
No 3
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=100.00 E-value=5.1e-36 Score=272.59 Aligned_cols=167 Identities=43% Similarity=0.579 Sum_probs=152.1
Q ss_pred cEEEEeCCCCcChhhhHHHHHhhCchHHHHHHHHHHHhCCCHHHHhhcCCCccchhhhhhhHHHHHHHHHHHHHHHhcCC
Q psy11092 108 TSIIMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAAVFVCSIGALEKLREERP 187 (278)
Q Consensus 108 ~vaflFpGqGaq~~gmg~~L~~~~p~~r~~i~~~~~~lg~~l~~~l~~~~~~~l~~~~~~qpai~a~q~a~~~ll~~~~p 187 (278)
+++|+|||||+||++|+++||+.+|.||+.+++|++++|+++.+++.+++.+.+.++.++||++|++|++++++|++
T Consensus 2 ~~~~~f~Gqg~~~~~m~~~l~~~~p~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~q~~i~~~~~al~~~l~~--- 78 (290)
T TIGR00128 2 KIAYVFPGQGSQTVGMGKDLYEQYPIAKELFDQASEALGYDLKKLCQEGPAEELNKTQYTQPALYVVSAILYLKLKE--- 78 (290)
T ss_pred CEEEEECCCCcchhhhHHHHHHcCHHHHHHHHHHHHHhCcCHHHHHhCCCHHHhccccchhHHHHHHHHHHHHHHHH---
Confidence 58999999999999999999999999999999999999999999988766667888999999999999999999999
Q ss_pred Cc-cccCcEEEecChhHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhcCCCCeeEEEecCCHHHHHHHHHhcC-CceEEE
Q psy11092 188 AA-IENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQLACEIAPGGMASVMYGPDSQLNLAMKRAK-EWCVDR 265 (278)
Q Consensus 188 ~g-i~p~~~v~GhSlGEiaAa~aAG~ls~~da~~lv~~Rg~l~~~~~~~~~G~M~av~~~~~~~v~~~~~~~~-~~v~iA 265 (278)
+| |.| ++++|||+||++|+|++|++|++|++++++.|+++|++......|.|+++.+...+.+.+++.... ..+.++
T Consensus 79 ~g~i~p-~~v~GhS~GE~aAa~~aG~ls~eda~~lv~~r~~~~~~~~~~~~g~m~av~~~~~~~~~~~l~~~~~~~v~ia 157 (290)
T TIGR00128 79 QGGLKP-DFAAGHSLGEYSALVAAGALDFETALKLVKKRGELMQEAVPEGGGAMAAVIGLDEEQLAQACEEATENDVDLA 157 (290)
T ss_pred cCCCCC-CEEeecCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEeCCCHHHHHHHHHhcCCCcEEEE
Confidence 66 776 999999999999999999999999999999999999987555678999997767778888887654 359999
Q ss_pred eeeCCCcEEEecC
Q psy11092 266 GIPEPELSSISGR 278 (278)
Q Consensus 266 ~~Nsp~~~VisG~ 278 (278)
++|+|+++||||+
T Consensus 158 ~~nsp~~~visG~ 170 (290)
T TIGR00128 158 NFNSPGQVVISGT 170 (290)
T ss_pred EECCCCCEEEECC
Confidence 9999999999995
No 4
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=100.00 E-value=1.1e-35 Score=278.07 Aligned_cols=176 Identities=39% Similarity=0.626 Sum_probs=156.2
Q ss_pred CCCCCCcEEEEeCCCCcChhhhHHHHHhhCchHHHHHHHHHHHhCCCHHHHhhcCCCccchhhhhhhHHHHHHHHHHHHH
Q psy11092 102 KTDPRDTSIIMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAAVFVCSIGALEK 181 (278)
Q Consensus 102 ~~~~~~~vaflFpGqGaq~~gmg~~L~~~~p~~r~~i~~~~~~lg~~l~~~l~~~~~~~l~~~~~~qpai~a~q~a~~~l 181 (278)
....+++++|+|||||+||+|||++ +..+|.|++.+++|++++|+++.+++..++.+.+.++.++||+||++|++++++
T Consensus 33 ~~~~~~~~a~lFpGQGsq~~gm~~~-~~~~p~~~~~~~~~~~~lg~~l~~~~~~~~~~~l~~~~~~qp~i~~~~~a~~~~ 111 (343)
T PLN02752 33 FADYKPTTAFLFPGQGAQAVGMGKE-AAEVPAAKALFDKASEILGYDLLDVCVNGPKEKLDSTVVSQPAIYVASLAAVEK 111 (343)
T ss_pred ccCCCCCEEEEECCCCcchhhHHHH-HHhCHHHHHHHHHHHHHhCCCHHHHHhcCCHHHHhcchhhhHHHHHHHHHHHHH
Confidence 4456789999999999999999999 788999999999999999999999988777777889999999999999999999
Q ss_pred HHhcC--CCccccCcEEEecChhHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhcCCCCeeEEEecCCHHHHHHHHHhc-
Q psy11092 182 LREER--PAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQLACEIAPGGMASVMYGPDSQLNLAMKRA- 258 (278)
Q Consensus 182 l~~~~--p~gi~p~~~v~GhSlGEiaAa~aAG~ls~~da~~lv~~Rg~l~~~~~~~~~G~M~av~~~~~~~v~~~~~~~- 258 (278)
|+..+ |+.+.++++++|||+|||+|+|++|+|+++|++++++.|+++|+......+|+|++|.+.+.+.++++++..
T Consensus 112 l~~~g~~~~~~~~~~~~~GHSlGE~aA~~~AG~ls~e~al~lv~~R~~~m~~~~~~~~g~m~av~g~~~~~~~~~l~~~~ 191 (343)
T PLN02752 112 LRARDGGQAVIDSVDVCAGLSLGEYTALVFAGALSFEDGLKLVKLRGEAMQAAADAGPSGMVSVIGLDSDKVQELCAAAN 191 (343)
T ss_pred HHhcCCCcccccCCCeeeeccHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCccEEEEeCCCHHHHHHHHHHhh
Confidence 98843 444434589999999999999999999999999999999999998765578999999888888888888653
Q ss_pred -----CCceEEEeeeCCCcEEEecC
Q psy11092 259 -----KEWCVDRGIPEPELSSISGR 278 (278)
Q Consensus 259 -----~~~v~iA~~Nsp~~~VisG~ 278 (278)
..+++|+++|+|+++||||+
T Consensus 192 ~~~~~~~~v~IA~~Nsp~~~vIsG~ 216 (343)
T PLN02752 192 EEVGEDDVVQIANYLCPGNYAVSGG 216 (343)
T ss_pred hccCCCCeEEEEEEcCCCCEEEECc
Confidence 23699999999999999995
No 5
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=100.00 E-value=1.5e-34 Score=282.47 Aligned_cols=217 Identities=16% Similarity=0.096 Sum_probs=166.5
Q ss_pred CCCCCCCCCcCHHHHHHHHHHHHhhhhhcccccc---------ccccCCCCCccccCCcccccccCCCCCCCCCcEEEEe
Q psy11092 43 AKDENPPEKCEVLTAKELLENSTTYVGETVETEE---------DVWASKPYPKHYDPRQSQAQHSLRPKTDPRDTSIIMF 113 (278)
Q Consensus 43 ~~~~~~~~~~~~~~l~~~l~~a~~~l~~~~~~~~---------~~w~~~p~r~~~~~~~~~~~~~~~~~~~~~~~vaflF 113 (278)
+..|+..++. +.|.+.|+.+.+.+.+.+.... ..|.+ |.|+||+++-. .....+..++++|+|
T Consensus 116 ~~~~~~~~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~G~~f~~~p~---~~~~~~~~~~vaFvF 187 (538)
T TIGR02816 116 PQAVIQAASV--SAAKQEISAINDALPALFAEKSNATSTNKGLIHYKT---PAGSCFSLAPL---GSNNDNAKAGLAFVY 187 (538)
T ss_pred ceEEEEcCCH--HHHHHHHHHHHHhHHHHhhcccccccccccccCCCC---CCcceeecCcC---ccccCCCCCCEEEEE
Confidence 3445555555 9999999999999977655322 27999 99999986510 000112467899999
Q ss_pred CCCCcChhhhHHHHHhhCchHHHHHHHHHHHhCCCHHHHhhcC-----CCccchhhhhhhHHHHH--HHHHHHHHHH-hc
Q psy11092 114 PGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEG-----PASELNKTIHAQAAVFV--CSIGALEKLR-EE 185 (278)
Q Consensus 114 pGqGaq~~gmg~~L~~~~p~~r~~i~~~~~~lg~~l~~~l~~~-----~~~~l~~~~~~qpai~a--~q~a~~~ll~-~~ 185 (278)
||||+||+|||++||..+|+|++.++++. ++.+.+..+ +.....++.+.||++|+ ++++++++|+ +
T Consensus 188 pGqGsqy~gMGr~L~~~~P~fr~~ld~~~-----~L~~~L~~~~~~~~~~~~~~~~~l~q~alfav~~~~aLa~ll~~~- 261 (538)
T TIGR02816 188 PGVGTVYADMFNDFHQYFPALFAKLEREG-----DLKAMLQAEDIYGEDPKHAAEMSLGDLAIAGVGSSYLLTQLLCDE- 261 (538)
T ss_pred CCCchHHHHHHHHHHhhCHHHHHHHHhcC-----CHHHHhccccccccchhhhhhhhhHhHHHHHHHHHHHHHHHHHHh-
Confidence 99999999999999999999999999874 556555322 22335566788999995 5999999995 7
Q ss_pred CCCccccCcEEEecChhHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhc----------------CCCCeeEEEecCCHH
Q psy11092 186 RPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQLACE----------------IAPGGMASVMYGPDS 249 (278)
Q Consensus 186 ~p~gi~p~~~v~GhSlGEiaAa~aAG~ls~~da~~lv~~Rg~l~~~~~~----------------~~~G~M~av~~~~~~ 249 (278)
+||+| ++++|||+||++|+|++|+|+++|++.++..|+++|+.... ...++|+++...+.+
T Consensus 262 --~GI~P-dav~GHSlGE~aAa~aAGvls~~dal~~v~~rs~L~~~~~rG~mmavr~a~~~~~~~~~~~~~~avV~a~~~ 338 (538)
T TIGR02816 262 --FAIKP-DFALGYSKGEASMWASLGVWKNPHALIEKTQTDPIFTSAISGKLTAVREAWQLDDTAAEIQWNSFVVRCEAA 338 (538)
T ss_pred --cCCCC-CEEeecCHHHHHHHHHhCCCCcHHHHHHHHHhhHHhccccChhhhhhhhhhccccccccccccceeecCCHH
Confidence 78887 99999999999999999999999999999999988865310 012334444555678
Q ss_pred HHHHHHHhcCCceEEEeeeCCCcEEEecC
Q psy11092 250 QLNLAMKRAKEWCVDRGIPEPELSSISGR 278 (278)
Q Consensus 250 ~v~~~~~~~~~~v~iA~~Nsp~~~VisG~ 278 (278)
+++.++...+ +|+||++|+ .++||||+
T Consensus 339 ~V~~~L~~~~-~V~IAaiN~-~q~VISG~ 365 (538)
T TIGR02816 339 PIEALLKDFP-HAYLAIIQG-DTCVIAGC 365 (538)
T ss_pred HHHHHhccCC-CeEEEEeCC-CCeEeeCC
Confidence 8898887654 599999998 69999995
No 6
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=100.00 E-value=1.1e-33 Score=258.95 Aligned_cols=159 Identities=28% Similarity=0.369 Sum_probs=142.6
Q ss_pred EEEEeCCCCcChhhhHHHHHhhCchHHHHHHHHHHHhCCCHHHHhhcCCCccchhhhhhhHHHHHHHHHHHHHHHhcCCC
Q psy11092 109 SIIMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAAVFVCSIGALEKLREERPA 188 (278)
Q Consensus 109 vaflFpGqGaq~~gmg~~L~~~~p~~r~~i~~~~~~lg~~l~~~l~~~~~~~l~~~~~~qpai~a~q~a~~~ll~~~~p~ 188 (278)
++|+|||||+||+|||++|. .+|.|++.+++|++.+++++.++ .+.+.+.++.++||++|++|++++++|++ +
T Consensus 1 ~~~~F~GqG~q~~~m~~~l~-~~p~~~~~~~~~~~~l~~~~~~~---~~~~~l~~~~~~qp~i~~~q~al~~~l~~---~ 73 (295)
T TIGR03131 1 IALLFPGQGSQRAGMLAELP-DHPAVAAVLAEASDVLGIDPREL---DDAEALASTRSAQLCILAAGVAAWRALLA---L 73 (295)
T ss_pred CEEEECCcchhhhhHHHHHH-hCHHHHHHHHHHHHHhCcCHHHc---CCHhhhccchhhhHHHHHHHHHHHHHHHh---c
Confidence 58999999999999999995 58999999999999999999884 23345788899999999999999999999 6
Q ss_pred ccccCcEEEecChhHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhcCCCCeeEEEecCCHHHHHHHHHhcCCceEEEeee
Q psy11092 189 AIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQLACEIAPGGMASVMYGPDSQLNLAMKRAKEWCVDRGIP 268 (278)
Q Consensus 189 gi~p~~~v~GhSlGEiaAa~aAG~ls~~da~~lv~~Rg~l~~~~~~~~~G~M~av~~~~~~~v~~~~~~~~~~v~iA~~N 268 (278)
|++| ++++|||+||++|+|++|+++++|++++++.|+++|+... ...++|+++.+...+.++++++.. .++|+++|
T Consensus 74 g~~P-~~v~GhS~GE~aAa~~aG~~s~e~a~~lv~~r~~~~~~~~-~~~~~m~av~~~~~~~~~~~l~~~--~v~ia~~N 149 (295)
T TIGR03131 74 LPRP-SAVAGYSVGEYAAAVVAGVLTFDDALRLVALRAALMDQAV-PGGYGMLAVLGLDLAAVEALIAKH--GVYLAIIN 149 (295)
T ss_pred CCCC-cEEeecCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhc-CCCCCEEEEeCCCHHHHHHHHHHc--CEEEEEEc
Confidence 7765 9999999999999999999999999999999999998765 346689999888888899998764 39999999
Q ss_pred CCCcEEEecC
Q psy11092 269 EPELSSISGR 278 (278)
Q Consensus 269 sp~~~VisG~ 278 (278)
+|+++||||+
T Consensus 150 sp~~~visG~ 159 (295)
T TIGR03131 150 APDQVVIAGS 159 (295)
T ss_pred CCCCEEEECC
Confidence 9999999995
No 7
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=100.00 E-value=2.1e-33 Score=256.47 Aligned_cols=159 Identities=29% Similarity=0.407 Sum_probs=143.7
Q ss_pred eCCCCcChhhhHHHHHhhCchHHHHHHHHHHHh----CCCHHHHhhcCCC--ccchhhhhhhHHHHHHHHHHHHHHHhcC
Q psy11092 113 FPGQGTQFVGMGGDLIKTLPMAKDLFEEASAIL----KFDLLKLCLEGPA--SELNKTIHAQAAVFVCSIGALEKLREER 186 (278)
Q Consensus 113 FpGqGaq~~gmg~~L~~~~p~~r~~i~~~~~~l----g~~l~~~l~~~~~--~~l~~~~~~qpai~a~q~a~~~ll~~~~ 186 (278)
|||||+||++|+++|++.+|.|++.+++|++++ ++++.+++..++. ..++.+.++||++|++|++++++|++
T Consensus 1 F~GQG~q~~~m~~~l~~~~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~~~~~~~l~~~~~~q~~i~~~~~a~~~~l~~-- 78 (298)
T smart00827 1 FTGQGSQWPGMGRELYETEPVFRAALDECDAALQPLLGWSLLDVLFGEDGAASLLRRTEVAQPALFAVQVALARLWRS-- 78 (298)
T ss_pred CCCCchhHHHHHHHHHHcCHHHHHHHHHHHHHHHHhcCCCHHHHHcCCCCchhhhcccchhHHHHHHHHHHHHHHHHH--
Confidence 899999999999999999999999999999987 8999999876543 35788999999999999999999998
Q ss_pred CCccccCcEEEecChhHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhcCCCCeeEEEecCCHHHHHHHHHhcCCceEEEe
Q psy11092 187 PAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQLACEIAPGGMASVMYGPDSQLNLAMKRAKEWCVDRG 266 (278)
Q Consensus 187 p~gi~p~~~v~GhSlGEiaAa~aAG~ls~~da~~lv~~Rg~l~~~~~~~~~G~M~av~~~~~~~v~~~~~~~~~~v~iA~ 266 (278)
.|++| ++++|||+||++|+|++|+++++|++++++.|+.+|++.. .+|+|+++.. +.+.++++++..+.+++|++
T Consensus 79 -~Gi~p-~~~~GhSlGE~aA~~~ag~~~~~~~l~l~~~r~~~~~~~~--~~g~m~av~~-~~~~~~~~l~~~~~~~~ia~ 153 (298)
T smart00827 79 -WGVRP-DAVVGHSLGEIAAAYVAGVLSLEDAARLVAARGRLMQALP--GGGAMLAVGL-SEEEVEELLAGYGGRVSVAA 153 (298)
T ss_pred -cCCcc-cEEEecCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcC--CCCeEEEEeC-CHHHHHHHHHhcCCcEEEEE
Confidence 66666 9999999999999999999999999999999999999874 5789999955 55678888877666799999
Q ss_pred eeCCCcEEEecC
Q psy11092 267 IPEPELSSISGR 278 (278)
Q Consensus 267 ~Nsp~~~VisG~ 278 (278)
+|+|+++||+|+
T Consensus 154 ~ns~~~~visG~ 165 (298)
T smart00827 154 VNGPSSVVLSGD 165 (298)
T ss_pred EcCCCCEEEECC
Confidence 999999999995
No 8
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=100.00 E-value=3.2e-33 Score=309.25 Aligned_cols=213 Identities=22% Similarity=0.266 Sum_probs=171.7
Q ss_pred CCCCCCcCHHHHHHHHHHHHhhhhhccccccccccCCCCCccccCCcccccccCCCCCCCCCcEEEEeCCCCcChhhhHH
Q psy11092 46 ENPPEKCEVLTAKELLENSTTYVGETVETEEDVWASKPYPKHYDPRQSQAQHSLRPKTDPRDTSIIMFPGQGTQFVGMGG 125 (278)
Q Consensus 46 ~~~~~~~~~~~l~~~l~~a~~~l~~~~~~~~~~w~~~p~r~~~~~~~~~~~~~~~~~~~~~~~vaflFpGqGaq~~gmg~ 125 (278)
.+..++. ++|.+.|+++.+.+... ....|.. +.+++++... .....++++|+|||||+||+|||+
T Consensus 533 a~va~~~--~el~~~L~~a~~~l~~~---~~~~~~~---~~g~~~~~~~-------~~~~~~kvaflFpGQGSQy~gMgr 597 (2582)
T TIGR02813 533 GFVAKNA--DELITMLEQAITQLEAK---SCEEWQL---PSGISYRKSA-------LVVESGKVAALFAGQGSQYLNMGR 597 (2582)
T ss_pred EEEECCH--HHHHHHHHHHHHhhhcc---ccccccc---cccccccccc-------cccCCCceEEEeCCCCchhHHHHH
Confidence 3444444 88999999998888755 3456877 5666655320 012357899999999999999999
Q ss_pred HHHhhCchHHHHHHHHHHHhC----CCHHHHhhcC----------CCccchhhhhhhHHHHHHHHHHHHHHHhcCCCccc
Q psy11092 126 DLIKTLPMAKDLFEEASAILK----FDLLKLCLEG----------PASELNKTIHAQAAVFVCSIGALEKLREERPAAIE 191 (278)
Q Consensus 126 ~L~~~~p~~r~~i~~~~~~lg----~~l~~~l~~~----------~~~~l~~~~~~qpai~a~q~a~~~ll~~~~p~gi~ 191 (278)
+||..+|.||+.+++|+++++ +++.++++.. ....+.++.++||+||++|++++++|++ +||+
T Consensus 598 eL~~~~P~fr~~ld~~d~~l~~~~~~~L~~~l~p~~~~~~~~~~~~~~~L~~t~~aQPaI~a~q~Al~~lL~~---~Gi~ 674 (2582)
T TIGR02813 598 ELACNFPEVRQAAADMDSVFTQAGKGALSPVLYPIPVFNDESRKAQEEALTNTQHAQSAIGTLSMGQYKLFTQ---AGFK 674 (2582)
T ss_pred HHHhcCHHHHHHHHHHHHHhhhhcCCcHHHHhccccccccccccchhhhhccchhHHHHHHHHHHHHHHHHHH---cCCc
Confidence 999999999999999999874 4566665421 2235788999999999999999999999 7887
Q ss_pred cCcEEEecChhHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhc-CCCCeeEEEecCC---HHHHHHHHHhcCCceEEEee
Q psy11092 192 NCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQLACE-IAPGGMASVMYGP---DSQLNLAMKRAKEWCVDRGI 267 (278)
Q Consensus 192 p~~~v~GhSlGEiaAa~aAG~ls~~da~~lv~~Rg~l~~~~~~-~~~G~M~av~~~~---~~~v~~~~~~~~~~v~iA~~ 267 (278)
| ++++|||+|||+|+|++|+|+++|++++++.||++|+.... ...|+|+++.+.. .+.++.++.... .|+||++
T Consensus 675 P-d~v~GHSlGE~aAa~aAGvls~edal~Lv~~Rg~lm~~~~~~~~~G~M~AV~l~~~~~~~~v~~~l~~~~-~V~IA~~ 752 (2582)
T TIGR02813 675 A-DMTAGHSFGELSALCAAGVISDDDYMMLAFSRGQAMAAPTGEADIGFMYAVILAVVGSPTVIANCIKDFE-GVSIANY 752 (2582)
T ss_pred c-ceeecCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccCCCCceeEEEEccccccHHHHHHHhccCC-CEEEEEE
Confidence 6 99999999999999999999999999999999999998653 2468999998653 345666665443 5999999
Q ss_pred eCCCcEEEecC
Q psy11092 268 PEPELSSISGR 278 (278)
Q Consensus 268 Nsp~~~VisG~ 278 (278)
|+|+++||||+
T Consensus 753 NsP~qvVISG~ 763 (2582)
T TIGR02813 753 NSPTQLVIAGV 763 (2582)
T ss_pred ecCCCEEEECC
Confidence 99999999996
No 9
>KOG2926|consensus
Probab=99.96 E-value=8.4e-30 Score=231.18 Aligned_cols=173 Identities=45% Similarity=0.714 Sum_probs=161.8
Q ss_pred CCCcEEEEeCCCCcChhhhHHHHHhhCchHHHHHHHHHHHhCCCHHHHhhcCCCccchhhhhhhHHHHHHHHHHHHHHHh
Q psy11092 105 PRDTSIIMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAAVFVCSIGALEKLRE 184 (278)
Q Consensus 105 ~~~~vaflFpGqGaq~~gmg~~L~~~~p~~r~~i~~~~~~lg~~l~~~l~~~~~~~l~~~~~~qpai~a~q~a~~~ll~~ 184 (278)
+++..+++|||||+||.|||+.+++ +|..++.+++|.+++|+++.+++.+++.+.++++.++||+|++.++|..+.|+.
T Consensus 60 ~~e~s~iLFPGQG~q~vgm~q~~l~-~p~a~~~~~~A~~vl~YdLlki~~~gP~e~ldrT~~~QpAI~~~SlAa~E~l~~ 138 (386)
T KOG2926|consen 60 PKETSVILFPGQGAQSVGMGQYLLQ-NPAARRLFAEASNVLGYDLLKICVNGPKEKLDRTVIAQPAIDVSSLAALEQLRL 138 (386)
T ss_pred cccceEEEeCCCChhhhhhhHHHHh-CcchhHHHHHHHHHhhHHHHHHHhcCccchhhcccccccceecccHHHHHhccc
Confidence 6678999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccCcEEEecChhHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhcCCCCeeEEEecCCHHHHHHHHHhcC-----
Q psy11092 185 ERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQLACEIAPGGMASVMYGPDSQLNLAMKRAK----- 259 (278)
Q Consensus 185 ~~p~gi~p~~~v~GhSlGEiaAa~aAG~ls~~da~~lv~~Rg~l~~~~~~~~~G~M~av~~~~~~~v~~~~~~~~----- 259 (278)
.+|..|+.+++.+|||+|||+|++++|+|++.++++++..|+..|+++....+++|..+...+...+..+|....
T Consensus 139 ~~p~~ie~~~~~aGfSlGEy~alvfa~aLsFs~alKlVk~Ra~AMs~a~~~~~~~m~~~~~~p~sk~~~~~~~a~~~~~~ 218 (386)
T KOG2926|consen 139 LGPSIIENLVVTAGFSLGEYAALVFAGALSFSSALKLVKARAEAMSEASELVASGMVMILGLPTSKVQKACASANQLSAS 218 (386)
T ss_pred cCcchhheeeeeccccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccceeecCcHhHHHHHHhhhHHHhhh
Confidence 888778888999999999999999999999999999999999999999888899999999999888888776532
Q ss_pred ---CceEEEeeeCCCcEEEecC
Q psy11092 260 ---EWCVDRGIPEPELSSISGR 278 (278)
Q Consensus 260 ---~~v~iA~~Nsp~~~VisG~ 278 (278)
.-+.||++|+|+|+||+|.
T Consensus 219 qe~~~~~VANyl~~~~~VvsG~ 240 (386)
T KOG2926|consen 219 QEYPVCEVANYLSPGQRVVSGL 240 (386)
T ss_pred ccCCeeeeeccCCCCcEEeeCc
Confidence 3478999999999999995
No 10
>KOG1202|consensus
Probab=99.94 E-value=6.2e-27 Score=236.03 Aligned_cols=226 Identities=17% Similarity=0.185 Sum_probs=184.5
Q ss_pred CCCCCCCCCcCHHHHHHHHHHHHhhhhhcc------ccccccccCCCCCccccCCcccccccCCCCCCCCCcEEEEeCCC
Q psy11092 43 AKDENPPEKCEVLTAKELLENSTTYVGETV------ETEEDVWASKPYPKHYDPRQSQAQHSLRPKTDPRDTSIIMFPGQ 116 (278)
Q Consensus 43 ~~~~~~~~~~~~~~l~~~l~~a~~~l~~~~------~~~~~~w~~~p~r~~~~~~~~~~~~~~~~~~~~~~~vaflFpGq 116 (278)
...+...+|.+.|.+.++++++.+.-++.. .....+-..+|||.+.+-..+...+.........+++.|+++|.
T Consensus 429 ~~~l~~~sgRT~eAVeqll~~~~~n~~D~~~l~llndi~s~p~~~~pFRGY~vl~~e~~~~ev~~~~~~eRPiwfiysGM 508 (2376)
T KOG1202|consen 429 LLRLVRASGRTPEAVEQLLEQALRNSDDLELLSLLNDIASVPAPLHPFRGYAVLGGERGGPEVQQVPAGERPIWFIYSGM 508 (2376)
T ss_pred cceeeecCCCCHHHHHHHHHHHhcccchHHHHHHHHHHhcCCccCCcccceEEeccccCCcceeecCCCCcceEEEEeCC
Confidence 344566788999999999998876543310 11233456789998876443322233333334458899999999
Q ss_pred CcChhhhHHHHHhhCchHHHHHHHHHHHh---CCCHHHHhhcCCCccchhhhhhhHHHHHHHHHHHHHHHhcCCCccccC
Q psy11092 117 GTQFVGMGGDLIKTLPMAKDLFEEASAIL---KFDLLKLCLEGPASELNKTIHAQAAVFVCSIGALEKLREERPAAIENC 193 (278)
Q Consensus 117 Gaq~~gmg~~L~~~~p~~r~~i~~~~~~l---g~~l~~~l~~~~~~~l~~~~~~qpai~a~q~a~~~ll~~~~p~gi~p~ 193 (278)
|+||+||+.+|++ .+.|++.|.+|++.+ |+++.+.+...+++.+++..++...|.++|+|+.++|..+ ||.|
T Consensus 509 GsQW~~Ma~~LMk-l~~F~dsi~~~ae~l~~~gldv~~vL~~s~~~tfdn~l~sfvsitAiQiaLtDlLs~l---gi~P- 583 (2376)
T KOG1202|consen 509 GSQWAGMAKDLMK-LERFRDSIQRSAEVLKPFGLDVIDVLTRSDESTFDNILNSFVSITAIQIALTDLLSCL---GIRP- 583 (2376)
T ss_pred cchhhHHHHHHhh-hHHHHHHHHHHHhhhcccCcchhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCC-
Confidence 9999999999999 999999999999997 7999999888888889999999999999999999999994 4555
Q ss_pred cEEEecChhHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhcCCCCeeEEEecCCHHHHHHHHHhcCCceEEEeeeCCCcE
Q psy11092 194 VATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQLACEIAPGGMASVMYGPDSQLNLAMKRAKEWCVDRGIPEPELS 273 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aAG~ls~~da~~lv~~Rg~l~~~~~~~~~G~M~av~~~~~~~v~~~~~~~~~~v~iA~~Nsp~~~ 273 (278)
|.++|||+||+.++|+.|+++.|+.+..+|+||+.+-+. ...+|+|.||+++.+ ++..- .+..++-+|+||.+.|
T Consensus 584 DGIvGHS~GElgc~YaDGclt~EqtvlaAYwRG~sild~-~l~kGaMAAVGLsWE-q~~~~---~P~~~~paCHNs~D~~ 658 (2376)
T KOG1202|consen 584 DGIVGHSLGELGCGYADGCLTQEQTVLAAYWRGQSILDT-HLPKGAMAAVGLSWE-QCKSR---CPPDVVPACHNSKDNV 658 (2376)
T ss_pred CcccccccchhcccccccccCHHHHHHHHHHcCceeccc-cCCCcchhhhcCCHH-HHhcc---CCCcccccccCCCCce
Confidence 899999999999999999999999999999999987776 368999999999875 44433 3667999999999999
Q ss_pred EEecC
Q psy11092 274 SISGR 278 (278)
Q Consensus 274 VisG~ 278 (278)
+|||+
T Consensus 659 TiSGp 663 (2376)
T KOG1202|consen 659 TISGP 663 (2376)
T ss_pred EecCC
Confidence 99995
No 11
>COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.94 E-value=1.3e-26 Score=242.97 Aligned_cols=229 Identities=20% Similarity=0.234 Sum_probs=182.5
Q ss_pred CCCCCCCCcCHHHHHHHHHHHHhhhhhcccc---cccccc------CCCCCccccCCc-ccc---------cccCC----
Q psy11092 44 KDENPPEKCEVLTAKELLENSTTYVGETVET---EEDVWA------SKPYPKHYDPRQ-SQA---------QHSLR---- 100 (278)
Q Consensus 44 ~~~~~~~~~~~~~l~~~l~~a~~~l~~~~~~---~~~~w~------~~p~r~~~~~~~-~~~---------~~~~~---- 100 (278)
+.+++.+..+++.|++...+.+++++.+... .+..|+ .+++|..++.+. +++ .+...
T Consensus 439 p~~l~lSAk~~~~L~~~a~~l~~~l~~~~~~~~l~dia~Tl~~gR~~~~~R~~~va~~~eel~~~L~~~~~~~~~~~~~~ 518 (1061)
T COG3321 439 PRLLVLSAKTAERLAATAPRLADRLELQGGLLSLADVAYTLQAGRPHFEHRLAVVANDREELEAGLRAFAAGKAKALSGV 518 (1061)
T ss_pred CceeeeecCCHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHhhhhhccceeEEEeCCHHHHHHHHHHHhcCCCCcccee
Confidence 3466788888899999999999999876321 111233 577788877444 222 01011
Q ss_pred CCCCCCCcEEEEeCCCCcChhhhHHHHHhhCchHHHHHHHHHHHh----CCCHHHHhhcCCCccchhhhhhhHHHHHHHH
Q psy11092 101 PKTDPRDTSIIMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAIL----KFDLLKLCLEGPASELNKTIHAQAAVFVCSI 176 (278)
Q Consensus 101 ~~~~~~~~vaflFpGqGaq~~gmg~~L~~~~p~~r~~i~~~~~~l----g~~l~~~l~~~~~~~l~~~~~~qpai~a~q~ 176 (278)
......++++|+|+|||+||.+||++|++.+|.|+++++.|+..+ ++++.+.+..+....+..+...||.+|++|+
T Consensus 519 ~~~~~~~~~vfvf~gqgsq~~~mg~el~~~~p~f~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~~~~Qp~lfai~~ 598 (1061)
T COG3321 519 GADDSGKKTVFVFPGQGSQWAGMGRELYALEPVFASAFDALEALLHRLLGFSLPEVIFAPDYPFLESIDFAQPALFAVSV 598 (1061)
T ss_pred cccCCCCceEEEeCchHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHcCCcccceecCCCCccccCcchhhhHHHHHHH
Confidence 111122269999999999999999999999999999999998764 7888887766543337777899999999999
Q ss_pred HHHHHHHhcCCCccccCcEEEecChhHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhhcCCCCeeEEEecCCHHHHHHHHH
Q psy11092 177 GALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQLACEIAPGGMASVMYGPDSQLNLAMK 256 (278)
Q Consensus 177 a~~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aAG~ls~~da~~lv~~Rg~l~~~~~~~~~G~M~av~~~~~~~v~~~~~ 256 (278)
+++++|+. +|+.| ++|+|||+||++|++++|++|++|+++++..|+++|+... ..|+|++|..+..+.+.+++.
T Consensus 599 ala~l~~s---~gv~p-~~viGhS~gE~aaA~~aGv~s~~d~~~~v~~Rg~lm~~~~--~~G~m~~v~~~~~~~~~~~~~ 672 (1061)
T COG3321 599 ALAALWRS---WGVIP-GAVIGHSLGELAAAVAAGVLSLEDALRVVATRGRLMQQLA--GEGAMLAVELSLLAEVQELLA 672 (1061)
T ss_pred HHHHHHHh---cCCcC-ccccCcCHHHHHHHHHhccCChhhhhHhhhhcchhhccCC--CCcchhhhhcCccchhhHHhh
Confidence 99999999 77776 8999999999999999999999999999999999999964 349999999988666676665
Q ss_pred hcCCceEEEeeeCCCcEEEecC
Q psy11092 257 RAKEWCVDRGIPEPELSSISGR 278 (278)
Q Consensus 257 ~~~~~v~iA~~Nsp~~~VisG~ 278 (278)
.....+.++.+|+|+++||+|+
T Consensus 673 ~~~~~v~ia~~n~P~~~vi~g~ 694 (1061)
T COG3321 673 LGRPQVPLAAVNSPQQVVIAGD 694 (1061)
T ss_pred ccccceeEEEecCCceEEecCC
Confidence 4434699999999999999995
No 12
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=85.38 E-value=5.5 Score=33.25 Aligned_cols=47 Identities=30% Similarity=0.280 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhcCCCccccCcEEEecChhHHHHHHhcCcCCHHHHHHHH
Q psy11092 172 FVCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELI 222 (278)
Q Consensus 172 ~a~q~a~~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aAG~ls~~da~~lv 222 (278)
.+.++++.+.|.+. ++. ++.+.|-|.|.+.|++.+--.+.++...+.
T Consensus 10 G~~~~Gvl~aL~e~---gi~-~d~v~GtSaGAi~aa~~a~g~~~~~~~~~~ 56 (172)
T cd07198 10 GIYHVGVAKALRER---GPL-IDIIAGTSAGAIVAALLASGRDLEEALLLL 56 (172)
T ss_pred HHHHHHHHHHHHHc---CCC-CCEEEEECHHHHHHHHHHcCCCHHHHHHHH
Confidence 35678888888884 444 599999999999998888888888877766
No 13
>cd07219 Pat_PNPLA1 Patatin-like phospholipase domain containing protein 1. Members of this family share a patatin domain, initially discovered in potato tubers. Some members of PNPLA1 subfamily do not have the lipase consensus sequence Gly-X-Ser-X-Gly which is essential for hydrolase activity. This family includes PNPLA1 from Homo sapiens and Gallus gallus. Currently, there is no literature available on the physiological role, structure, or enzymatic activity of PNPLA1. It is expressed in various human tissues in low mRNA levels.
Probab=81.35 E-value=7.8 Score=37.16 Aligned_cols=53 Identities=19% Similarity=0.295 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHhcCCCccccCcEEEecChhHHHHHHhcCcCCHHHHHHHHH
Q psy11092 171 VFVCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIK 223 (278)
Q Consensus 171 i~a~q~a~~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aAG~ls~~da~~lv~ 223 (278)
..+.++++++.|.+.+|+.++.++.++|-|.|.+.|+..+-..+.++..++..
T Consensus 23 rGiYHvGVl~aL~E~gp~ll~~~d~IaGtSAGALvAAl~asG~s~de~~r~~~ 75 (382)
T cd07219 23 LSFYQAGVVDALRDLAPRMLETAHRVAGTSAGSVIAALVVCGISMDEYLRVLN 75 (382)
T ss_pred HHHHHHHHHHHHHhcCCcccccCCeEEEEcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 34568889999998776656667899999999998877666677888777765
No 14
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=80.72 E-value=4.6 Score=37.16 Aligned_cols=42 Identities=31% Similarity=0.344 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCCCccccCcEEEecChhHHHHHHhcCcCCHHH
Q psy11092 172 FVCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYET 217 (278)
Q Consensus 172 ~a~q~a~~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aAG~ls~~d 217 (278)
.+.+++..+.|.+ .||.+ +++.|-|+|.+.++..|.-.+.++
T Consensus 23 G~~hiGVl~aL~e---~gi~~-~~iaGtS~GAiva~l~A~g~~~~~ 64 (306)
T COG1752 23 GAAHIGVLKALEE---AGIPI-DVIAGTSAGAIVAALYAAGMDEDE 64 (306)
T ss_pred HHHHHHHHHHHHH---cCCCc-cEEEecCHHHHHHHHHHcCCChhH
Confidence 3567888888888 45554 999999999988766555555544
No 15
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=78.53 E-value=7.2 Score=32.47 Aligned_cols=47 Identities=28% Similarity=0.330 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhcCCCccccCcEEEecChhHHHHHHhcCcCCHHHHHHHHH
Q psy11092 173 VCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIK 223 (278)
Q Consensus 173 a~q~a~~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aAG~ls~~da~~lv~ 223 (278)
+.++++.+.|.+. ++. +|.++|-|.|.+.|+..+--.+.++..+...
T Consensus 13 ~~~~Gvl~~L~~~---~~~-~d~i~GtSaGal~a~~~a~g~~~~~~~~~~~ 59 (175)
T cd07205 13 LAHIGVLKALEEA---GIP-IDIVSGTSAGAIVGALYAAGYSPEEIEERAK 59 (175)
T ss_pred HHHHHHHHHHHHc---CCC-eeEEEEECHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4577788888774 343 5999999999999988776778888766553
No 16
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=78.50 E-value=7 Score=32.97 Aligned_cols=47 Identities=30% Similarity=0.372 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhcCCCccccCcEEEecChhHHHHHHhcCcCCHHHHHHHHH
Q psy11092 173 VCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIK 223 (278)
Q Consensus 173 a~q~a~~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aAG~ls~~da~~lv~ 223 (278)
+.++++.+.|.+. ++.+ |.++|-|.|-+.|+..+-..+.++...+..
T Consensus 12 ~~~~Gvl~~L~e~---~~~~-d~i~GtSaGai~aa~~a~g~~~~~~~~~~~ 58 (194)
T cd07207 12 IAYIGALKALEEA---GILK-KRVAGTSAGAITAALLALGYSAADIKDILK 58 (194)
T ss_pred HHHHHHHHHHHHc---CCCc-ceEEEECHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4557777888773 4444 999999999988877666677777655544
No 17
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=76.13 E-value=7.9 Score=33.73 Aligned_cols=39 Identities=28% Similarity=0.255 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCCCccccCcEEEecChhHHHHHHhcCcCC
Q psy11092 172 FVCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFD 214 (278)
Q Consensus 172 ~a~q~a~~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aAG~ls 214 (278)
.+.++++++.|.+. ++. +|.++|-|.|-+.|+..+.-.+
T Consensus 10 G~~~~Gvl~aL~e~---g~~-~d~i~GtS~GAl~aa~~a~~~~ 48 (215)
T cd07209 10 GAYQAGVLKALAEA---GIE-PDIISGTSIGAINGALIAGGDP 48 (215)
T ss_pred HHHHHHHHHHHHHc---CCC-CCEEEEECHHHHHHHHHHcCCc
Confidence 46678888888884 443 5999999999998887666665
No 18
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=75.48 E-value=9.9 Score=33.39 Aligned_cols=47 Identities=28% Similarity=0.345 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhcCCCccccCcEEEecChhHHHHHHhcCcCCHHHHHHHH
Q psy11092 172 FVCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELI 222 (278)
Q Consensus 172 ~a~q~a~~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aAG~ls~~da~~lv 222 (278)
.+.++++.+.|.+ .+++ ++.++|-|.|-+.|+..+-..+.++.....
T Consensus 12 G~~~~GvL~aL~e---~gi~-~~~i~GtSaGAi~aa~~a~g~~~~~~~~~~ 58 (221)
T cd07210 12 FYAHLGFLAALLE---MGLE-PSAISGTSAGALVGGLFASGISPDEMAELL 58 (221)
T ss_pred HHHHHHHHHHHHH---cCCC-ceEEEEeCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4567888888887 4454 489999999999988777667777765554
No 19
>cd07224 Pat_like Patatin-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=75.44 E-value=11 Score=33.26 Aligned_cols=50 Identities=30% Similarity=0.344 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhcCCCcccc-CcEEEecChhHHHHHHhcCcCCHHHHHHHHH
Q psy11092 171 VFVCSIGALEKLREERPAAIEN-CVATLGFSLGEITALTFSGVFDYETALELIK 223 (278)
Q Consensus 171 i~a~q~a~~~ll~~~~p~gi~p-~~~v~GhSlGEiaAa~aAG~ls~~da~~lv~ 223 (278)
.+...+++++.|.+ .+|.| ++.++|-|.|.+.|++.+-..+.++..++..
T Consensus 10 lg~yh~GVl~~L~e---~gi~~~~~~i~G~SAGAl~aa~~asg~~~~~~~~~~~ 60 (233)
T cd07224 10 LFPYHLGVLSLLIE---AGVINETTPLAGASAGSLAAACSASGLSPEEALEATE 60 (233)
T ss_pred HHHHHHHHHHHHHH---cCCCCCCCEEEEEcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 45667888889988 45544 4799999999998876666677777666554
No 20
>cd07223 Pat_PNPLA5-mammals Patatin-like phospholipase domain containing protein 5. PNPLA5, also known as GS2L (GS2-like), plays a role in regulation of adipocyte differentiation. PNPLA5 is expressed in brain tissue in high mRNA levels and low levels in liver tissue. There is no concrete evidence in support of the enzymatic activity of GS2L. This family includes patatin-like proteins: GS2L (GS2-like) and PNPLA5 (Patatin-like phospholipase domain-containing protein 5) reported exclusively in mammals.
Probab=74.57 E-value=9.3 Score=36.83 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHhcCCCccccCcEEEecChhHHHHHHhcCcCCHHHHHHHHHH
Q psy11092 170 AVFVCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKI 224 (278)
Q Consensus 170 ai~a~q~a~~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aAG~ls~~da~~lv~~ 224 (278)
..+...++.+..|.+.+|.-+...+.+.|-|.|.++|++.+...+.++....++.
T Consensus 19 flG~yHvGV~~~L~e~~p~ll~~~~~iaGaSAGAL~aa~~a~g~~~~~~~~~i~~ 73 (405)
T cd07223 19 YLGLYHVGVTECLRQRAPRLLQGARRIYGSSSGALNAVSIVCGKSADFCCSNLLG 73 (405)
T ss_pred HHHHHHHHHHHHHHHhCchhhccCCeeeeeCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4456788888999887666555557899999999999999999999966655553
No 21
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=73.54 E-value=10 Score=34.54 Aligned_cols=42 Identities=29% Similarity=0.286 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhcCCCccccCcEEEecChhHHHHH-HhcCcCCHHHHH
Q psy11092 173 VCSIGALEKLREERPAAIENCVATLGFSLGEITAL-TFSGVFDYETAL 219 (278)
Q Consensus 173 a~q~a~~~ll~~~~p~gi~p~~~v~GhSlGEiaAa-~aAG~ls~~da~ 219 (278)
+..+++.+.|.+ .||. +|++.|-|+|.+.++ |++| ++..+..
T Consensus 23 ~ahiGVL~aLeE---~gi~-~d~v~GtSaGAiiga~ya~g-~~~~~~~ 65 (269)
T cd07227 23 ISHIGILQALEE---AGIP-IDAIGGTSIGSFVGGLYARE-ADLVPIF 65 (269)
T ss_pred HHHHHHHHHHHH---cCCC-ccEEEEECHHHHHHHHHHcC-CchHHHH
Confidence 456788888888 4554 599999999997765 5555 5655543
No 22
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=72.05 E-value=11 Score=36.28 Aligned_cols=47 Identities=17% Similarity=0.237 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhcCCCccccCcEEEecChhHHHHHHhcCcCCHHHHHHHHH
Q psy11092 172 FVCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIK 223 (278)
Q Consensus 172 ~a~q~a~~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aAG~ls~~da~~lv~ 223 (278)
....++.++.|.+ .|+.| +.+.|-|.|.+.|+..+. .+.++...+..
T Consensus 95 G~~h~Gv~kaL~e---~gl~p-~~i~GtS~Gaivaa~~a~-~~~~e~~~~l~ 141 (391)
T cd07229 95 GLCHLGVVKALWL---RGLLP-RIITGTATGALIAALVGV-HTDEELLRFLD 141 (391)
T ss_pred HHHHHHHHHHHHH---cCCCC-ceEEEecHHHHHHHHHHc-CCHHHHHHHHh
Confidence 3456788888887 55555 899999999999988887 57778777765
No 23
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=71.46 E-value=13 Score=34.56 Aligned_cols=45 Identities=20% Similarity=0.195 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhcCCCccccCcEEEecChhHHHHH-HhcCcCCHHHHHHHH
Q psy11092 173 VCSIGALEKLREERPAAIENCVATLGFSLGEITAL-TFSGVFDYETALELI 222 (278)
Q Consensus 173 a~q~a~~~ll~~~~p~gi~p~~~v~GhSlGEiaAa-~aAG~ls~~da~~lv 222 (278)
...+++.+.|.+ .||. +|.++|-|.|-+.++ |++| .+.++...+.
T Consensus 28 ~ahiGvL~aLee---~gi~-~d~v~GtSaGAi~ga~ya~g-~~~~~~~~~~ 73 (306)
T cd07225 28 CAHIGVIKALEE---AGIP-VDMVGGTSIGAFIGALYAEE-RNISRMKQRA 73 (306)
T ss_pred HHHHHHHHHHHH---cCCC-CCEEEEECHHHHHHHHHHcC-CCHHHHHHHH
Confidence 456778888888 4554 599999999997765 5555 5655544433
No 24
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=69.97 E-value=14 Score=30.88 Aligned_cols=43 Identities=26% Similarity=0.266 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhcCCCccccCcEEEecChhHHHHHHhcCcCCHHHHH
Q psy11092 173 VCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETAL 219 (278)
Q Consensus 173 a~q~a~~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aAG~ls~~da~ 219 (278)
+.++++.+.|.+. ++. +|.+.|-|.|-+.|+..+.-.+.++..
T Consensus 13 ~~~~Gvl~~L~e~---g~~-~d~i~GtSaGAi~aa~~a~g~~~~~~~ 55 (175)
T cd07228 13 WAHIGVLRALEEE---GIE-IDIIAGSSIGALVGALYAAGHLDALEE 55 (175)
T ss_pred HHHHHHHHHHHHC---CCC-eeEEEEeCHHHHHHHHHHcCCCHHHHH
Confidence 4577888888874 443 599999999999877666555655543
No 25
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3. PNPLA3 is a triacylglycerol lipase that mediates triacylglycerol hydrolysis in adipocytes and is an indicator of the nutritional state. PNPLA3 is also known as adiponutrin (ADPN) or iPLA2-epsilon. Human adiponutrins are bound to the cell membrane of adipocytes and show transacylase, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: ADPN (adiponutrin) from mammals, PNPLA3 (Patatin-like phospholipase domain-containing protein 3), and iPLA2-epsilon (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=69.91 E-value=18 Score=32.58 Aligned_cols=52 Identities=19% Similarity=0.324 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhcCCCccccCcEEEecChhHHHHHHhcCcCCHHHHHHHHH
Q psy11092 172 FVCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIK 223 (278)
Q Consensus 172 ~a~q~a~~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aAG~ls~~da~~lv~ 223 (278)
...++++++.|.+.++.-++.++.++|-|.|.++|++.+=..+.++..+...
T Consensus 12 G~yh~GVl~aL~e~~~~l~~~~~~i~GtSAGAl~aa~~asg~~~~~~~~~~~ 63 (252)
T cd07221 12 GFYHVGVTRCLSERAPHLLRDARMFFGASAGALHCVTFLSGLPLDQILQILM 63 (252)
T ss_pred HHHHHHHHHHHHHhCcchhccCCEEEEEcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3467888899988655433346899999999998876555556766666554
No 26
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=69.29 E-value=13 Score=33.91 Aligned_cols=53 Identities=23% Similarity=0.278 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhcCCCccccCcEEEecChhHHHHHHhcCcCCHHHHHHHHHHH
Q psy11092 173 VCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIR 225 (278)
Q Consensus 173 a~q~a~~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aAG~ls~~da~~lv~~R 225 (278)
++++++.+.|.+.++.-...+|.++|-|.|-+.|+..+--.+.++...+....
T Consensus 15 i~~~~vL~~Le~~~~~~~~~fD~i~GTSaGaiia~~la~g~~~~e~~~~~~~~ 67 (288)
T cd07213 15 IVQLVLLKRLAEEFPSFLDQIDLFAGTSAGSLIALGLALGYSPRQVLKLYEEV 67 (288)
T ss_pred HHHHHHHHHHHHhCcccccceeEEEEeCHHHHHHHHHHcCcCHHHHHHHHHHh
Confidence 34556666666654433344799999999999988877667888887766554
No 27
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2. PNPLA2 plays a key role in hydrolysis of stored triacylglecerols and is also known as adipose triglyceride lipase (ATGL). Members of this family share a patain domain, initially discovered in potato tubers. ATGL is expressed in white and brown adipose tissue in high mRNA levels. Mutations in PNPLA2 encoding adipose triglyceride lipase (ATGL) leads to neutral lipid storage disease (NLSD) which is characterized by the accumulation of triglycerides in multiple tissues. ATGL mutations are also commonly associated with severe forms of skeletal- and cardio-myopathy. This family includes patatin-like proteins: TTS-2.2 (transport-secretion protein 2.2), PNPLA2 (Patatin-like phospholipase domain-containing protein 2), and iPLA2-zeta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=67.71 E-value=31 Score=30.98 Aligned_cols=51 Identities=22% Similarity=0.162 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHhcCCCccccCcEEEecChhHHHHHHhcCcCCHHHHHHH
Q psy11092 171 VFVCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALEL 221 (278)
Q Consensus 171 i~a~q~a~~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aAG~ls~~da~~l 221 (278)
..+..++.++.|.+.++.-++.++.++|-|.|.++|++.+-..+.++....
T Consensus 15 rG~yh~GVl~~L~e~g~~l~~~~~~i~G~SAGAl~aa~~a~g~~~~~~~~~ 65 (249)
T cd07220 15 LGVYHVGVASCLLEHAPFLVANARKIYGASAGALTATALVTGVCLGECGAS 65 (249)
T ss_pred HHHHHHHHHHHHHhcCCcccccCCeEEEEcHHHHHHHHHHcCCCHHHHHHH
Confidence 345678888899886554333358999999999998765544566654433
No 28
>PRK10279 hypothetical protein; Provisional
Probab=66.32 E-value=9.6 Score=35.29 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcCCCccccCcEEEecChhHHHH-HHhcCcC
Q psy11092 172 FVCSIGALEKLREERPAAIENCVATLGFSLGEITA-LTFSGVF 213 (278)
Q Consensus 172 ~a~q~a~~~ll~~~~p~gi~p~~~v~GhSlGEiaA-a~aAG~l 213 (278)
.+.+++..+.|.+ .||. |++++|-|+|.+.+ +|++|..
T Consensus 17 G~ahiGVL~aL~E---~gi~-~d~i~GtS~GAlvga~yA~g~~ 55 (300)
T PRK10279 17 GWSHIGVINALKK---VGIE-IDIVAGCSIGSLVGAAYACDRL 55 (300)
T ss_pred HHHHHHHHHHHHH---cCCC-cCEEEEEcHHHHHHHHHHcCCh
Confidence 3457888899988 4555 49999999999775 6787863
No 29
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=65.90 E-value=34 Score=29.18 Aligned_cols=27 Identities=26% Similarity=0.484 Sum_probs=19.9
Q ss_pred CCCCCcEEEEeCCCCcChhhhHHHHHh
Q psy11092 103 TDPRDTSIIMFPGQGTQFVGMGGDLIK 129 (278)
Q Consensus 103 ~~~~~~vaflFpGqGaq~~gmg~~L~~ 129 (278)
++...+|+++.||-|+.-.++......
T Consensus 15 ~d~A~~Vav~VPG~~t~~~~~~~~~~~ 41 (177)
T PF06259_consen 15 PDTADHVAVLVPGTGTTLDSFLGGMDD 41 (177)
T ss_pred cCCcCeeEEEcCCCCCCcccccchhHH
Confidence 445678999999999987766655444
No 30
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=64.48 E-value=11 Score=33.80 Aligned_cols=40 Identities=28% Similarity=0.354 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCCCccccCcEEEecChhHHHHH-HhcCcCCH
Q psy11092 173 VCSIGALEKLREERPAAIENCVATLGFSLGEITAL-TFSGVFDY 215 (278)
Q Consensus 173 a~q~a~~~ll~~~~p~gi~p~~~v~GhSlGEiaAa-~aAG~ls~ 215 (278)
+.++++.+.|.+ .++.++|.++|-|.|-+.|+ +++|.-..
T Consensus 11 ~~~~Gvl~al~e---~~~~~fd~i~GtSaGAi~a~~~~~g~~~~ 51 (266)
T cd07208 11 AYTAGVLDAFLE---AGIRPFDLVIGVSAGALNAASYLSGQRGR 51 (266)
T ss_pred HHHHHHHHHHHH---cCCCCCCEEEEECHHHHhHHHHHhCCcch
Confidence 467788888887 44444699999999998866 46665443
No 31
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=60.45 E-value=30 Score=32.07 Aligned_cols=50 Identities=22% Similarity=0.036 Sum_probs=33.5
Q ss_pred HHHHHHHHHhc-CCCccccCcEEEecChhHHHHHHhcCcCCHHHHHHHHHH
Q psy11092 175 SIGALEKLREE-RPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKI 224 (278)
Q Consensus 175 q~a~~~ll~~~-~p~gi~p~~~v~GhSlGEiaAa~aAG~ls~~da~~lv~~ 224 (278)
.+.+.+.|++. +..-.+-+|.++|-|.|-+.|+..+--++.+|...+...
T Consensus 14 ~i~vL~~le~~~g~~i~~~fD~i~GTStGgiIA~~la~g~s~~e~~~~y~~ 64 (312)
T cd07212 14 LIQMLIAIEKALGRPIRELFDWIAGTSTGGILALALLHGKSLREARRLYLR 64 (312)
T ss_pred HHHHHHHHHHHhCCCchhhccEEEeeChHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34444555542 321112269999999999988877767899998877543
No 32
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=60.03 E-value=41 Score=31.94 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=23.6
Q ss_pred CCCcEEEEeCCCCcChhhhHHHHHhhCchHHH
Q psy11092 105 PRDTSIIMFPGQGTQFVGMGGDLIKTLPMAKD 136 (278)
Q Consensus 105 ~~~~vaflFpGqGaq~~gmg~~L~~~~p~~r~ 136 (278)
+.+++++.++|-|.++....+.|+. .|..++
T Consensus 90 ~~rp~~IhLagTGDh~f~rR~~l~a-~pLl~~ 120 (348)
T PF09752_consen 90 PYRPVCIHLAGTGDHGFWRRRRLMA-RPLLKE 120 (348)
T ss_pred CCCceEEEecCCCccchhhhhhhhh-hHHHHc
Confidence 4578999999999998887777765 454444
No 33
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family. Members of this family share a patain domain, initially discovered in potato tubers. PNPLA protein members show non-specific hydrolase activity with a variety of substrates such as triacylglycerol, phospholipids, and retinylesters. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly). Nomenclature of PNPLA family could be misleading as some of the mammalian members of this family show hydrolase, but no phospholipase activity.
Probab=59.61 E-value=39 Score=30.04 Aligned_cols=51 Identities=27% Similarity=0.320 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCCCccccCcEEEecChhHHHHHHhcCcCCHHHHHHHH
Q psy11092 172 FVCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELI 222 (278)
Q Consensus 172 ~a~q~a~~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aAG~ls~~da~~lv 222 (278)
....++.++.|.+.++.-....+.++|-|.|.+.|++.+-..+.++.....
T Consensus 11 G~yh~GVl~~L~e~g~~l~~~~~~i~GtSAGAl~aa~~a~g~~~~~~~~~~ 61 (243)
T cd07204 11 GIYHVGVASALREHAPRLLQNARRIAGASAGAIVAAVVLCGVSMEEACSFI 61 (243)
T ss_pred HHHHHHHHHHHHHcCcccccCCCEEEEEcHHHHHHHHHHhCCCHHHHHHHH
Confidence 346788888898844321111259999999999988766666777754443
No 34
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2. Calcium-independent phospholipase A2; otherwise known as Group IVA-1 PLA2. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly);mutagenesis experiments confirm the role of this serine as a nucleophile. Some members of this group show triacylglycerol lipase activity (EC 3:1:1:3). Members include iPLA-1, iPLA-2, and iPLA-3 from Aedes aegypti and show acylglycerol transacylase/lipase activity. Also includes putative iPLA2-eta from Pediculus humanus corporis which shows patatin-like phospholipase activity.
Probab=59.17 E-value=34 Score=30.58 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhcCCCccccCcEEEecChhHHHHHHhcCcCCHHHHHHH
Q psy11092 172 FVCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALEL 221 (278)
Q Consensus 172 ~a~q~a~~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aAG~ls~~da~~l 221 (278)
....++.++.|++.++. + .++.+.|-|.|.++|++.+-.++.++..+.
T Consensus 12 G~yh~GVl~aL~e~g~~-~-~~d~i~GtSAGAl~aa~~a~g~~~~~~~~~ 59 (245)
T cd07218 12 GIYHVGVAVCLKKYAPH-L-LLNKISGASAGALAACCLLCDLPLGEMTSD 59 (245)
T ss_pred HHHHHHHHHHHHHhCcc-c-CCCeEEEEcHHHHHHHHHHhCCcHHHHHHH
Confidence 45678888999885432 1 137899999999998877666776665533
No 35
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=58.99 E-value=12 Score=32.09 Aligned_cols=32 Identities=22% Similarity=0.198 Sum_probs=21.8
Q ss_pred HHHHHHhcCCCccccCcEEEecChhHHHHHHhcCcC
Q psy11092 178 ALEKLREERPAAIENCVATLGFSLGEITALTFSGVF 213 (278)
Q Consensus 178 ~~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aAG~l 213 (278)
+.+++++. ++++ -.++|||+|-..|+.++...
T Consensus 56 l~~~l~~~---~~~~-~~lvG~S~Gg~va~~~a~~~ 87 (242)
T PRK11126 56 LSQTLQSY---NILP-YWLVGYSLGGRIAMYYACQG 87 (242)
T ss_pred HHHHHHHc---CCCC-eEEEEECHHHHHHHHHHHhC
Confidence 34555553 3333 58999999998888776554
No 36
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4. PNPLA4, also known as GS2 (gene sequence-2), shows both lipase and transacylation activities. GS2 lipase is expressed in various tissues, predominantly in muscle and adipocytes tissue. It is also expressed in keratinocytes and shows retinyl ester hydrolase, acylglycerol, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: GS2 from mammals, PNPLA4 (Patatin-like phospholipase domain-containing protein 4), and iPLA2-eta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=58.78 E-value=50 Score=29.43 Aligned_cols=40 Identities=18% Similarity=0.181 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcCCCccccCcEEEecChhHHHHHHhcC
Q psy11092 172 FVCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSG 211 (278)
Q Consensus 172 ~a~q~a~~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aAG 211 (278)
....++.++.|.+.++.-++.++.++|-|.|.+.|++.+.
T Consensus 11 G~yhiGVl~~L~e~g~~l~~~~~~i~GtSaGAl~aa~~a~ 50 (246)
T cd07222 11 GIYHLGAAKALLRHGKKLLKRVKRFAGASAGSLVAAVLLT 50 (246)
T ss_pred HHHHHHHHHHHHHcCchhhccCCEEEEECHHHHHHHHHhc
Confidence 3467888889988544322346899999999999887763
No 37
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=58.21 E-value=31 Score=31.98 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhcCCCccccCcEEEecChhHHHHHHhc
Q psy11092 173 VCSIGALEKLREERPAAIENCVATLGFSLGEITALTFS 210 (278)
Q Consensus 173 a~q~a~~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aA 210 (278)
+..++.++.|.+ .++.| +.+.|-|.|.+.|+..+
T Consensus 82 ~~h~Gvl~aL~e---~~l~~-~~i~GtSaGAi~aa~~~ 115 (298)
T cd07206 82 LFHLGVVKALWE---QDLLP-RVISGSSAGAIVAALLG 115 (298)
T ss_pred HHHHHHHHHHHH---cCCCC-CEEEEEcHHHHHHHHHH
Confidence 456778888877 45554 89999999998877655
No 38
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=56.90 E-value=37 Score=31.91 Aligned_cols=46 Identities=17% Similarity=0.162 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhcCCCccccCcEEEecChhHHHHHHhcCcCCHHHHHHHH
Q psy11092 172 FVCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELI 222 (278)
Q Consensus 172 ~a~q~a~~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aAG~ls~~da~~lv 222 (278)
.+..++.++.|.+ .|+.| +.+.|-|.|.+.|+..+. -+.++...+.
T Consensus 80 g~~h~GVlkaL~e---~gl~p-~~i~GsSaGAivaa~~~~-~t~~El~~~~ 125 (323)
T cd07231 80 GTFHVGVVRTLVE---HQLLP-RVIAGSSVGSIVCAIIAT-RTDEELQSFF 125 (323)
T ss_pred HHHHHHHHHHHHH---cCCCC-CEEEEECHHHHHHHHHHc-CCHHHHHHHH
Confidence 3557788888888 45555 899999999998877765 5777776665
No 39
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=53.19 E-value=54 Score=30.02 Aligned_cols=53 Identities=19% Similarity=0.175 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhc-CCCccccCcEEEecChhHHHHHHhc-CcCCHHHHHHHHHHHH
Q psy11092 174 CSIGALEKLREE-RPAAIENCVATLGFSLGEITALTFS-GVFDYETALELIKIRS 226 (278)
Q Consensus 174 ~q~a~~~ll~~~-~p~gi~p~~~v~GhSlGEiaAa~aA-G~ls~~da~~lv~~Rg 226 (278)
+++.+.+.|.+. +..-.+.+|.++|-|.|-+.|+..+ +.++.++...+....+
T Consensus 22 ~~~~vL~~Le~~~~~~i~~~fDli~GTStGgiiA~~la~~~~~~~e~~~~y~~~~ 76 (308)
T cd07211 22 VALEILRKIEKLTGKPIHELFDYICGVSTGAILAFLLGLKKMSLDECEELYRKLG 76 (308)
T ss_pred HHHHHHHHHHHHhCCCchhhcCEEEecChhHHHHHHHhcccccHHHHHHHHHHHH
Confidence 345555555542 2111122689999999999988775 5799999888766543
No 40
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=52.13 E-value=19 Score=30.74 Aligned_cols=29 Identities=28% Similarity=0.493 Sum_probs=20.1
Q ss_pred HHHHHhcCCCccccCcEEEecChhHHHHHHhc
Q psy11092 179 LEKLREERPAAIENCVATLGFSLGEITALTFS 210 (278)
Q Consensus 179 ~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aA 210 (278)
++.++...|.| |-.++|||+|-+.|...|
T Consensus 56 ~~~I~~~~~~g---p~~L~G~S~Gg~lA~E~A 84 (229)
T PF00975_consen 56 AEAIRARQPEG---PYVLAGWSFGGILAFEMA 84 (229)
T ss_dssp HHHHHHHTSSS---SEEEEEETHHHHHHHHHH
T ss_pred HHHhhhhCCCC---CeeehccCccHHHHHHHH
Confidence 34555555555 359999999988776554
No 41
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=51.83 E-value=59 Score=26.77 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=14.0
Q ss_pred cEEEecChhHHHHHHhcC
Q psy11092 194 VATLGFSLGEITALTFSG 211 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aAG 211 (278)
-.++|||+|-..|+.++.
T Consensus 72 ~~l~G~S~Gg~ia~~~a~ 89 (251)
T TIGR03695 72 FFLVGYSMGGRIALYYAL 89 (251)
T ss_pred EEEEEeccHHHHHHHHHH
Confidence 478899999877776553
No 42
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=51.37 E-value=16 Score=31.66 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=17.9
Q ss_pred HHHHHHhcCCCccccCcEEEecChhHHHHHHh
Q psy11092 178 ALEKLREERPAAIENCVATLGFSLGEITALTF 209 (278)
Q Consensus 178 ~~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~a 209 (278)
+.+.+++.+|. |.|+|+|.|-..|+..
T Consensus 93 l~~~i~~~GPf-----dGvlGFSQGA~lAa~l 119 (212)
T PF03959_consen 93 LRDYIEENGPF-----DGVLGFSQGAALAALL 119 (212)
T ss_dssp HHHHHHHH--------SEEEEETHHHHHHHHH
T ss_pred HHHHHHhcCCe-----EEEEeecHHHHHHHHH
Confidence 34566667774 8999999997776653
No 43
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=51.31 E-value=49 Score=32.18 Aligned_cols=44 Identities=32% Similarity=0.293 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhcCCCccccCcEEEecChhHHHHHHhcCcCCHHHHHHH
Q psy11092 173 VCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALEL 221 (278)
Q Consensus 173 a~q~a~~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aAG~ls~~da~~l 221 (278)
+..+++.+.|.+ .++.| +.+.|-|.|.+.|+..+. -+.++..++
T Consensus 86 ~~hiGVLkaL~E---~gl~p-~vIsGTSaGAivAal~as-~~~eel~~~ 129 (421)
T cd07230 86 MFHIGVLKALFE---ANLLP-RIISGSSAGSIVAAILCT-HTDEEIPEL 129 (421)
T ss_pred HHHHHHHHHHHH---cCCCC-CEEEEECHHHHHHHHHHc-CCHHHHHHH
Confidence 456777788877 45555 899999999988866554 466664443
No 44
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=50.56 E-value=19 Score=34.49 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=20.0
Q ss_pred HHHHHHhcCCCccccCcEEEecChhHHHHHHhc
Q psy11092 178 ALEKLREERPAAIENCVATLGFSLGEITALTFS 210 (278)
Q Consensus 178 ~~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aA 210 (278)
+.+++++ .+|+++.+++|||+|-..|+..+
T Consensus 150 ~~~ll~~---lgi~~~~~vvG~SmGG~ial~~a 179 (389)
T PRK06765 150 QKELIKS---LGIARLHAVMGPSMGGMQAQEWA 179 (389)
T ss_pred HHHHHHH---cCCCCceEEEEECHHHHHHHHHH
Confidence 3455666 35555557999999987776443
No 45
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=47.53 E-value=22 Score=32.89 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=19.0
Q ss_pred HHHHHhcCCCccccCcEEEecChhHHHHHHhc
Q psy11092 179 LEKLREERPAAIENCVATLGFSLGEITALTFS 210 (278)
Q Consensus 179 ~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aA 210 (278)
.+++.+++ ++++..++|||+|-+.|+..+
T Consensus 128 ~~ll~~l~---l~~~~~lvG~SmGG~vA~~~A 156 (343)
T PRK08775 128 ALLLDALG---IARLHAFVGYSYGALVGLQFA 156 (343)
T ss_pred HHHHHHcC---CCcceEEEEECHHHHHHHHHH
Confidence 35566643 322236999999988887654
No 46
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=47.07 E-value=20 Score=30.97 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=14.3
Q ss_pred cEEEecChhHHHHHHhc
Q psy11092 194 VATLGFSLGEITALTFS 210 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aA 210 (278)
..++|||+|-..|+.++
T Consensus 97 ~~lvG~S~Gg~~a~~~a 113 (278)
T TIGR03056 97 DGVIGHSAGAAIALRLA 113 (278)
T ss_pred ceEEEECccHHHHHHHH
Confidence 48999999998887665
No 47
>cd07232 Pat_PLPL Patain-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants and fungi. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=46.94 E-value=60 Score=31.42 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhcCCCccccCcEEEecChhHHHHHHhcCcCCHHHHHHHHH
Q psy11092 173 VCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIK 223 (278)
Q Consensus 173 a~q~a~~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aAG~ls~~da~~lv~ 223 (278)
...++.++.|.+ .++.| +.++|-|.|.+.|+..+- -+.++..++..
T Consensus 80 ~~h~GVlkaL~e---~gllp-~iI~GtSAGAivaalla~-~t~~el~~~~~ 125 (407)
T cd07232 80 YYHFGVVKALLD---ADLLP-NVISGTSGGSLVAALLCT-RTDEELKQLLV 125 (407)
T ss_pred HHHHHHHHHHHh---CCCCC-CEEEEECHHHHHHHHHHc-CCHHHHHHHHh
Confidence 346677788877 45554 899999999998877664 46666655543
No 48
>cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=46.71 E-value=71 Score=28.35 Aligned_cols=34 Identities=26% Similarity=0.194 Sum_probs=27.9
Q ss_pred CcEEEecChhHHHHHHhcCc-CCHHHHHHHHHHHH
Q psy11092 193 CVATLGFSLGEITALTFSGV-FDYETALELIKIRS 226 (278)
Q Consensus 193 ~~~v~GhSlGEiaAa~aAG~-ls~~da~~lv~~Rg 226 (278)
+|.++|-|.|-+.|+..+-. ++.++..++....+
T Consensus 35 fd~i~GtS~G~iia~~l~~~~~~~~~~~~~~~~~~ 69 (258)
T cd07199 35 FDLIAGTSTGGIIALGLALGRYSAEELVELYEELG 69 (258)
T ss_pred cceeeeccHHHHHHHHHhcCCCCHHHHHHHHHHHh
Confidence 69999999999888766655 99999988776544
No 49
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=46.29 E-value=17 Score=30.63 Aligned_cols=17 Identities=35% Similarity=0.430 Sum_probs=14.1
Q ss_pred CcEEEecChhHHHHHHh
Q psy11092 193 CVATLGFSLGEITALTF 209 (278)
Q Consensus 193 ~~~v~GhSlGEiaAa~a 209 (278)
+..++|||+|-++++-.
T Consensus 56 ~~ilVaHSLGc~~~l~~ 72 (171)
T PF06821_consen 56 PTILVAHSLGCLTALRW 72 (171)
T ss_dssp TEEEEEETHHHHHHHHH
T ss_pred CeEEEEeCHHHHHHHHH
Confidence 36999999999888764
No 50
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=46.12 E-value=29 Score=28.22 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=19.5
Q ss_pred HHHHHHhcCCCccccCcEEEecChhHHHHHHhc
Q psy11092 178 ALEKLREERPAAIENCVATLGFSLGEITALTFS 210 (278)
Q Consensus 178 ~~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aA 210 (278)
+.++++..+. + +-.++|||+|-..++.++
T Consensus 56 l~~~l~~~~~---~-~~~lvG~S~Gg~~a~~~a 84 (228)
T PF12697_consen 56 LAELLDALGI---K-KVILVGHSMGGMIALRLA 84 (228)
T ss_dssp HHHHHHHTTT---S-SEEEEEETHHHHHHHHHH
T ss_pred hhhccccccc---c-cccccccccccccccccc
Confidence 3445666443 2 258999999998887655
No 51
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=45.83 E-value=85 Score=29.97 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=14.2
Q ss_pred cEEEecChhHHHHHHhc
Q psy11092 194 VATLGFSLGEITALTFS 210 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aA 210 (278)
-.++|||+|-+.|+.++
T Consensus 178 ~~lvGhS~GG~la~~~a 194 (402)
T PLN02894 178 FILLGHSFGGYVAAKYA 194 (402)
T ss_pred eEEEEECHHHHHHHHHH
Confidence 57999999998887655
No 52
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=44.76 E-value=33 Score=32.40 Aligned_cols=35 Identities=17% Similarity=0.074 Sum_probs=30.0
Q ss_pred CcEEEecChhHHHHHHhcCcCCHHHHHHHHHHHHH
Q psy11092 193 CVATLGFSLGEITALTFSGVFDYETALELIKIRSQ 227 (278)
Q Consensus 193 ~~~v~GhSlGEiaAa~aAG~ls~~da~~lv~~Rg~ 227 (278)
+|.++|-|.|-+.|+..+--++.+|...+....+.
T Consensus 42 FDlIaGTStGgIIAa~la~g~s~~ei~~~y~~~~~ 76 (344)
T cd07217 42 FDFVGGTSTGSIIAACIALGMSVTDLLSFYTLNGV 76 (344)
T ss_pred ccEEEEecHHHHHHHHHHcCCCHHHHHHHHHhhhh
Confidence 68999999999999888877999999888776543
No 53
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=44.55 E-value=17 Score=28.49 Aligned_cols=16 Identities=31% Similarity=0.260 Sum_probs=12.1
Q ss_pred EEEecChhHHHHHHhc
Q psy11092 195 ATLGFSLGEITALTFS 210 (278)
Q Consensus 195 ~v~GhSlGEiaAa~aA 210 (278)
.+.|||+|-..|..++
T Consensus 67 ~itGHSLGGalA~l~a 82 (140)
T PF01764_consen 67 VITGHSLGGALASLAA 82 (140)
T ss_dssp EEEEETHHHHHHHHHH
T ss_pred hhhccchHHHHHHHHH
Confidence 6789999976665544
No 54
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=42.94 E-value=29 Score=30.64 Aligned_cols=18 Identities=33% Similarity=0.481 Sum_probs=15.0
Q ss_pred cEEEecChhHHHHHHhcC
Q psy11092 194 VATLGFSLGEITALTFSG 211 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aAG 211 (278)
-.++|||+|-+.|+.++-
T Consensus 93 ~~LvG~S~GG~va~~~a~ 110 (276)
T TIGR02240 93 VNAIGVSWGGALAQQFAH 110 (276)
T ss_pred eEEEEECHHHHHHHHHHH
Confidence 479999999998887763
No 55
>PRK13604 luxD acyl transferase; Provisional
Probab=42.05 E-value=34 Score=31.84 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=15.0
Q ss_pred cEEEecChhHHHHHHhcC
Q psy11092 194 VATLGFSLGEITALTFSG 211 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aAG 211 (278)
-.++|||+|-.+|..+|.
T Consensus 110 I~LiG~SmGgava~~~A~ 127 (307)
T PRK13604 110 LGLIAASLSARIAYEVIN 127 (307)
T ss_pred eEEEEECHHHHHHHHHhc
Confidence 589999999999876553
No 56
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=41.91 E-value=30 Score=30.75 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=13.8
Q ss_pred cEEEecChhHHHHHHhc
Q psy11092 194 VATLGFSLGEITALTFS 210 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aA 210 (278)
-.++|||+|-..|+..+
T Consensus 104 ~~lvGhS~Gg~va~~~a 120 (294)
T PLN02824 104 AFVICNSVGGVVGLQAA 120 (294)
T ss_pred eEEEEeCHHHHHHHHHH
Confidence 58999999988886554
No 57
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=40.64 E-value=24 Score=33.68 Aligned_cols=31 Identities=32% Similarity=0.266 Sum_probs=26.7
Q ss_pred cEEEecChhHHHHHHhcCcCCHHHHHHHHHH
Q psy11092 194 VATLGFSLGEITALTFSGVFDYETALELIKI 224 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aAG~ls~~da~~lv~~ 224 (278)
-+++|||+|-++++..+|+=..-+.+...+.
T Consensus 161 Vgv~GhS~GG~T~m~laGA~~~~~~~~~~C~ 191 (365)
T COG4188 161 VGVLGHSFGGYTAMELAGAELDAEALLQHCE 191 (365)
T ss_pred eEEEecccccHHHHHhccccccHHHHHHHhh
Confidence 5899999999999999999887777766665
No 58
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=38.77 E-value=54 Score=29.55 Aligned_cols=14 Identities=36% Similarity=0.641 Sum_probs=10.8
Q ss_pred cEEEecChhHHHHH
Q psy11092 194 VATLGFSLGEITAL 207 (278)
Q Consensus 194 ~~v~GhSlGEiaAa 207 (278)
=+++|||||-+-|-
T Consensus 76 ~alfGHSmGa~lAf 89 (244)
T COG3208 76 FALFGHSMGAMLAF 89 (244)
T ss_pred eeecccchhHHHHH
Confidence 48999999965553
No 59
>PRK07581 hypothetical protein; Validated
Probab=38.67 E-value=23 Score=32.42 Aligned_cols=17 Identities=18% Similarity=0.503 Sum_probs=13.3
Q ss_pred cEEEecChhHHHHHHhc
Q psy11092 194 VATLGFSLGEITALTFS 210 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aA 210 (278)
..++|||+|-..|+..+
T Consensus 126 ~~lvG~S~GG~va~~~a 142 (339)
T PRK07581 126 ALVVGWSMGAQQTYHWA 142 (339)
T ss_pred EEEEEeCHHHHHHHHHH
Confidence 35899999988887544
No 60
>PRK00870 haloalkane dehalogenase; Provisional
Probab=37.05 E-value=39 Score=30.25 Aligned_cols=28 Identities=11% Similarity=0.187 Sum_probs=18.0
Q ss_pred HHHHHhcCCCccccCcEEEecChhHHHHHHhc
Q psy11092 179 LEKLREERPAAIENCVATLGFSLGEITALTFS 210 (278)
Q Consensus 179 ~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aA 210 (278)
.+++.++ ++++ -.++|||+|-+.|+..+
T Consensus 106 ~~~l~~l---~~~~-v~lvGhS~Gg~ia~~~a 133 (302)
T PRK00870 106 RSWFEQL---DLTD-VTLVCQDWGGLIGLRLA 133 (302)
T ss_pred HHHHHHc---CCCC-EEEEEEChHHHHHHHHH
Confidence 3455553 3333 47899999987776544
No 61
>PRK06489 hypothetical protein; Provisional
Probab=37.00 E-value=26 Score=32.66 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=14.6
Q ss_pred cccCcEEEecChhHHHHHHhc
Q psy11092 190 IENCVATLGFSLGEITALTFS 210 (278)
Q Consensus 190 i~p~~~v~GhSlGEiaAa~aA 210 (278)
++++..++|||+|-+.|+..+
T Consensus 152 i~~~~~lvG~SmGG~vAl~~A 172 (360)
T PRK06489 152 VKHLRLILGTSMGGMHAWMWG 172 (360)
T ss_pred CCceeEEEEECHHHHHHHHHH
Confidence 333234899999988877544
No 62
>PRK11460 putative hydrolase; Provisional
Probab=36.53 E-value=70 Score=27.92 Aligned_cols=17 Identities=47% Similarity=0.610 Sum_probs=13.7
Q ss_pred cEEEecChhHHHHHHhc
Q psy11092 194 VATLGFSLGEITALTFS 210 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aA 210 (278)
-.++|||+|-..|+.++
T Consensus 105 i~l~GfS~Gg~~al~~a 121 (232)
T PRK11460 105 TALIGFSQGAIMALEAV 121 (232)
T ss_pred EEEEEECHHHHHHHHHH
Confidence 38999999998887644
No 63
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=36.13 E-value=28 Score=28.10 Aligned_cols=16 Identities=31% Similarity=0.191 Sum_probs=12.7
Q ss_pred EEEecChhHHHHHHhc
Q psy11092 195 ATLGFSLGEITALTFS 210 (278)
Q Consensus 195 ~v~GhSlGEiaAa~aA 210 (278)
.++|||+|--.|..++
T Consensus 31 ~v~GHSlGg~lA~l~a 46 (153)
T cd00741 31 HVTGHSLGGALAGLAG 46 (153)
T ss_pred EEEEcCHHHHHHHHHH
Confidence 7899999987666654
No 64
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=36.13 E-value=25 Score=30.46 Aligned_cols=16 Identities=31% Similarity=0.343 Sum_probs=12.8
Q ss_pred EEEecChhHHHHHHhc
Q psy11092 195 ATLGFSLGEITALTFS 210 (278)
Q Consensus 195 ~v~GhSlGEiaAa~aA 210 (278)
.+.|||+|--.|..++
T Consensus 131 ~vtGHSLGGaiA~l~a 146 (229)
T cd00519 131 IVTGHSLGGALASLLA 146 (229)
T ss_pred EEEccCHHHHHHHHHH
Confidence 7889999987776654
No 65
>PRK10673 acyl-CoA esterase; Provisional
Probab=35.94 E-value=46 Score=28.50 Aligned_cols=18 Identities=17% Similarity=0.456 Sum_probs=14.5
Q ss_pred cEEEecChhHHHHHHhcC
Q psy11092 194 VATLGFSLGEITALTFSG 211 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aAG 211 (278)
-.++|||+|-..|+.++.
T Consensus 83 ~~lvGhS~Gg~va~~~a~ 100 (255)
T PRK10673 83 ATFIGHSMGGKAVMALTA 100 (255)
T ss_pred eEEEEECHHHHHHHHHHH
Confidence 479999999988876653
No 66
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=35.89 E-value=86 Score=27.23 Aligned_cols=90 Identities=13% Similarity=0.154 Sum_probs=45.2
Q ss_pred cEEEEeCCCCcChhhhHHHHHhhCchHHHHHHHH-HHHhCCCHHHHhhcCCCccchhhhhhhHHHHHHHHHHHHHHHhcC
Q psy11092 108 TSIIMFPGQGTQFVGMGGDLIKTLPMAKDLFEEA-SAILKFDLLKLCLEGPASELNKTIHAQAAVFVCSIGALEKLREER 186 (278)
Q Consensus 108 ~vaflFpGqGaq~~gmg~~L~~~~p~~r~~i~~~-~~~lg~~l~~~l~~~~~~~l~~~~~~qpai~a~q~a~~~ll~~~~ 186 (278)
.++++|+|.|. |.++.+.+.+. +.+. --+.|++-...+.....+.-...+.. -.+-...+.
T Consensus 3 t~~v~~SGDgG-w~~~d~~~a~~-------l~~~G~~VvGvdsl~Yfw~~rtP~~~a~Dl~--------~~i~~y~~~-- 64 (192)
T PF06057_consen 3 TLAVFFSGDGG-WRDLDKQIAEA-------LAKQGVPVVGVDSLRYFWSERTPEQTAADLA--------RIIRHYRAR-- 64 (192)
T ss_pred EEEEEEeCCCC-chhhhHHHHHH-------HHHCCCeEEEechHHHHhhhCCHHHHHHHHH--------HHHHHHHHH--
Confidence 58999999986 45666655441 1110 01235666655443221111111111 111122222
Q ss_pred CCccccCcEEEecChhHHHHHHhcCcCCHHH
Q psy11092 187 PAAIENCVATLGFSLGEITALTFSGVFDYET 217 (278)
Q Consensus 187 p~gi~p~~~v~GhSlGEiaAa~aAG~ls~~d 217 (278)
|+... -+++|||+|.=...++...|+...
T Consensus 65 -w~~~~-vvLiGYSFGADvlP~~~nrLp~~~ 93 (192)
T PF06057_consen 65 -WGRKR-VVLIGYSFGADVLPFIYNRLPAAL 93 (192)
T ss_pred -hCCce-EEEEeecCCchhHHHHHhhCCHHH
Confidence 33333 488999999766666666666654
No 67
>PRK11071 esterase YqiA; Provisional
Probab=35.83 E-value=46 Score=28.20 Aligned_cols=20 Identities=35% Similarity=0.398 Sum_probs=16.7
Q ss_pred cEEEecChhHHHHHHhcCcC
Q psy11092 194 VATLGFSLGEITALTFSGVF 213 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aAG~l 213 (278)
-.++|||+|-..|+..+...
T Consensus 63 ~~lvG~S~Gg~~a~~~a~~~ 82 (190)
T PRK11071 63 LGLVGSSLGGYYATWLSQCF 82 (190)
T ss_pred eEEEEECHHHHHHHHHHHHc
Confidence 58999999999998877544
No 68
>PRK03592 haloalkane dehalogenase; Provisional
Probab=35.73 E-value=42 Score=29.82 Aligned_cols=28 Identities=11% Similarity=0.261 Sum_probs=18.9
Q ss_pred HHHHHhcCCCccccCcEEEecChhHHHHHHhc
Q psy11092 179 LEKLREERPAAIENCVATLGFSLGEITALTFS 210 (278)
Q Consensus 179 ~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aA 210 (278)
..+++.+ ++++ -.++|||+|-..|+..+
T Consensus 84 ~~ll~~l---~~~~-~~lvGhS~Gg~ia~~~a 111 (295)
T PRK03592 84 DAWFDAL---GLDD-VVLVGHDWGSALGFDWA 111 (295)
T ss_pred HHHHHHh---CCCC-eEEEEECHHHHHHHHHH
Confidence 3445553 2333 68999999998887655
No 69
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=35.43 E-value=44 Score=30.94 Aligned_cols=29 Identities=31% Similarity=0.352 Sum_probs=18.6
Q ss_pred HHHHHhcCCCccccCcEEEecChhHHHHHHhc
Q psy11092 179 LEKLREERPAAIENCVATLGFSLGEITALTFS 210 (278)
Q Consensus 179 ~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aA 210 (278)
..+++.++ +.++..++|||+|-+.|+..+
T Consensus 117 ~~~~~~l~---~~~~~~l~G~S~Gg~ia~~~a 145 (351)
T TIGR01392 117 KLLLDHLG---IEQIAAVVGGSMGGMQALEWA 145 (351)
T ss_pred HHHHHHcC---CCCceEEEEECHHHHHHHHHH
Confidence 34455533 332248999999988877554
No 70
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=35.26 E-value=42 Score=28.65 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=15.1
Q ss_pred cEEEecChhHHHHHHhcC
Q psy11092 194 VATLGFSLGEITALTFSG 211 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aAG 211 (278)
-.++|||+|-+.|+.++.
T Consensus 98 ~~liG~S~Gg~ia~~~a~ 115 (288)
T TIGR01250 98 FYLLGHSWGGMLAQEYAL 115 (288)
T ss_pred EEEEEeehHHHHHHHHHH
Confidence 489999999998887663
No 71
>PLN02965 Probable pheophorbidase
Probab=34.21 E-value=43 Score=29.19 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=13.2
Q ss_pred cEEEecChhHHHHHHhc
Q psy11092 194 VATLGFSLGEITALTFS 210 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aA 210 (278)
-.++|||+|-..|+.++
T Consensus 74 ~~lvGhSmGG~ia~~~a 90 (255)
T PLN02965 74 VILVGHSIGGGSVTEAL 90 (255)
T ss_pred EEEEecCcchHHHHHHH
Confidence 58999999988665443
No 72
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=33.51 E-value=48 Score=31.26 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=18.7
Q ss_pred HHHHHhcCCCccccCcEEEecChhHHHHHHhc
Q psy11092 179 LEKLREERPAAIENCVATLGFSLGEITALTFS 210 (278)
Q Consensus 179 ~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aA 210 (278)
.+++++++ +.++..++|||+|-..|+..+
T Consensus 137 ~~~l~~l~---~~~~~~lvG~S~Gg~ia~~~a 165 (379)
T PRK00175 137 ARLLDALG---ITRLAAVVGGSMGGMQALEWA 165 (379)
T ss_pred HHHHHHhC---CCCceEEEEECHHHHHHHHHH
Confidence 44555533 333237999999988776554
No 73
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=32.97 E-value=58 Score=29.49 Aligned_cols=28 Identities=29% Similarity=0.340 Sum_probs=19.2
Q ss_pred HHHHHhcCCCccccCcEEEecChhHHHHHHhc
Q psy11092 179 LEKLREERPAAIENCVATLGFSLGEITALTFS 210 (278)
Q Consensus 179 ~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aA 210 (278)
++.+++. ++.+ -.++|||+|-..|+.++
T Consensus 90 i~~L~~~---~~~~-v~LvG~SmGG~vAl~~A 117 (266)
T TIGR03101 90 YRWLIEQ---GHPP-VTLWGLRLGALLALDAA 117 (266)
T ss_pred HHHHHhc---CCCC-EEEEEECHHHHHHHHHH
Confidence 4455553 2333 58999999998888655
No 74
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=32.92 E-value=49 Score=30.89 Aligned_cols=14 Identities=21% Similarity=0.515 Sum_probs=11.7
Q ss_pred cEEEecChhHHHHH
Q psy11092 194 VATLGFSLGEITAL 207 (278)
Q Consensus 194 ~~v~GhSlGEiaAa 207 (278)
-.++|||+|-+.|+
T Consensus 157 ~~lvGhS~Gg~ia~ 170 (360)
T PLN02679 157 TVLIGNSVGSLACV 170 (360)
T ss_pred eEEEEECHHHHHHH
Confidence 58999999987765
No 75
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=32.53 E-value=44 Score=29.16 Aligned_cols=18 Identities=39% Similarity=0.490 Sum_probs=13.9
Q ss_pred cEEEecChhHHHHHHhcC
Q psy11092 194 VATLGFSLGEITALTFSG 211 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aAG 211 (278)
-.++|||+|-+.|+..+.
T Consensus 103 ~~lvG~S~Gg~ia~~~a~ 120 (282)
T TIGR03343 103 AHLVGNSMGGATALNFAL 120 (282)
T ss_pred eeEEEECchHHHHHHHHH
Confidence 489999999877765543
No 76
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=32.30 E-value=49 Score=27.40 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=14.7
Q ss_pred cEEEecChhHHHHHHhcCc
Q psy11092 194 VATLGFSLGEITALTFSGV 212 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aAG~ 212 (278)
-.++|||+|-+.|+.++..
T Consensus 81 v~liG~S~Gg~~a~~~a~~ 99 (251)
T TIGR02427 81 AVFCGLSLGGLIAQGLAAR 99 (251)
T ss_pred eEEEEeCchHHHHHHHHHH
Confidence 4789999998887765544
No 77
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=32.20 E-value=2.8e+02 Score=24.41 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhcCCC-ccccCcEEEecChhHHHHHHh
Q psy11092 174 CSIGALEKLREERPA-AIENCVATLGFSLGEITALTF 209 (278)
Q Consensus 174 ~q~a~~~ll~~~~p~-gi~p~~~v~GhSlGEiaAa~a 209 (278)
..-++.++|+.+.-. +.+. --+++||||-...+.+
T Consensus 75 s~~~l~~~L~~L~~~~~~~~-I~ilaHSMG~rv~~~a 110 (233)
T PF05990_consen 75 SGPALARFLRDLARAPGIKR-IHILAHSMGNRVLLEA 110 (233)
T ss_pred HHHHHHHHHHHHHhccCCce-EEEEEeCchHHHHHHH
Confidence 344555666553212 2332 4799999997766543
No 78
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=32.09 E-value=58 Score=26.90 Aligned_cols=17 Identities=41% Similarity=0.647 Sum_probs=13.8
Q ss_pred cEEEecChhHHHHHHhc
Q psy11092 194 VATLGFSLGEITALTFS 210 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aA 210 (278)
-.++|||+|-..|+.++
T Consensus 67 ~~lvG~S~Gg~~a~~~a 83 (245)
T TIGR01738 67 AIWLGWSLGGLVALHIA 83 (245)
T ss_pred eEEEEEcHHHHHHHHHH
Confidence 58999999998876554
No 79
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=31.12 E-value=35 Score=29.53 Aligned_cols=17 Identities=35% Similarity=0.427 Sum_probs=14.9
Q ss_pred cEEEecChhHHHHHHhc
Q psy11092 194 VATLGFSLGEITALTFS 210 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aA 210 (278)
-+++|||+|-+.|++++
T Consensus 117 ~~i~G~S~GG~~Al~~~ 133 (251)
T PF00756_consen 117 RAIAGHSMGGYGALYLA 133 (251)
T ss_dssp EEEEEETHHHHHHHHHH
T ss_pred eEEeccCCCcHHHHHHH
Confidence 39999999999999765
No 80
>PLN02578 hydrolase
Probab=30.94 E-value=55 Score=30.41 Aligned_cols=17 Identities=41% Similarity=0.520 Sum_probs=14.1
Q ss_pred cEEEecChhHHHHHHhc
Q psy11092 194 VATLGFSLGEITALTFS 210 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aA 210 (278)
-.++|||+|-+.|+.++
T Consensus 154 ~~lvG~S~Gg~ia~~~A 170 (354)
T PLN02578 154 AVLVGNSLGGFTALSTA 170 (354)
T ss_pred eEEEEECHHHHHHHHHH
Confidence 58899999998887655
No 81
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=30.68 E-value=39 Score=26.06 Aligned_cols=18 Identities=22% Similarity=0.464 Sum_probs=14.9
Q ss_pred cEEEecChhHHHHHHhcC
Q psy11092 194 VATLGFSLGEITALTFSG 211 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aAG 211 (278)
-.++|||+|-..++.++.
T Consensus 63 i~l~G~S~Gg~~a~~~~~ 80 (145)
T PF12695_consen 63 IILIGHSMGGAIAANLAA 80 (145)
T ss_dssp EEEEEETHHHHHHHHHHH
T ss_pred EEEEEEccCcHHHHHHhh
Confidence 489999999988877664
No 82
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=30.52 E-value=89 Score=28.65 Aligned_cols=35 Identities=11% Similarity=0.123 Sum_probs=29.0
Q ss_pred CcEEEecChhHHHHHHhcC-cCCHHHHHHHHHHHHH
Q psy11092 193 CVATLGFSLGEITALTFSG-VFDYETALELIKIRSQ 227 (278)
Q Consensus 193 ~~~v~GhSlGEiaAa~aAG-~ls~~da~~lv~~Rg~ 227 (278)
+|.++|-|.|-+.|+..+- .++.+|.+.+....+.
T Consensus 43 fDli~GTStGgiiA~~l~~~~~t~~e~~~~y~~~~~ 78 (309)
T cd07216 43 FDLIGGTSTGGLIAIMLGRLRMTVDECIDAYTRLAK 78 (309)
T ss_pred cCeeeeccHHHHHHHHhcccCCCHHHHHHHHHHHhH
Confidence 5899999999999998874 6899999877766553
No 83
>KOG2551|consensus
Probab=30.36 E-value=49 Score=29.52 Aligned_cols=29 Identities=31% Similarity=0.455 Sum_probs=22.3
Q ss_pred HHHHHHhcCCCccccCcEEEecChhHHHHHHhcC
Q psy11092 178 ALEKLREERPAAIENCVATLGFSLGEITALTFSG 211 (278)
Q Consensus 178 ~~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aAG 211 (278)
+.+.+++.||. |.++|.|.|..-+++.+|
T Consensus 95 l~~~i~enGPF-----DGllGFSQGA~laa~l~~ 123 (230)
T KOG2551|consen 95 LEDYIKENGPF-----DGLLGFSQGAALAALLAG 123 (230)
T ss_pred HHHHHHHhCCC-----ccccccchhHHHHHHhhc
Confidence 34566777775 999999999877777666
No 84
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=30.20 E-value=33 Score=31.04 Aligned_cols=19 Identities=32% Similarity=0.212 Sum_probs=15.7
Q ss_pred cEEEecChhHHHHHHhcCc
Q psy11092 194 VATLGFSLGEITALTFSGV 212 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aAG~ 212 (278)
-.++|||+|-..|..++..
T Consensus 114 i~lIGhSlGa~vAg~~a~~ 132 (275)
T cd00707 114 VHLIGHSLGAHVAGFAGKR 132 (275)
T ss_pred EEEEEecHHHHHHHHHHHH
Confidence 4799999999999887643
No 85
>PRK10349 carboxylesterase BioH; Provisional
Probab=30.20 E-value=62 Score=27.95 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=13.9
Q ss_pred cEEEecChhHHHHHHhc
Q psy11092 194 VATLGFSLGEITALTFS 210 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aA 210 (278)
-.++|||+|-..|+..+
T Consensus 76 ~~lvGhS~Gg~ia~~~a 92 (256)
T PRK10349 76 AIWLGWSLGGLVASQIA 92 (256)
T ss_pred eEEEEECHHHHHHHHHH
Confidence 47899999998887654
No 86
>PRK10566 esterase; Provisional
Probab=29.20 E-value=35 Score=29.44 Aligned_cols=17 Identities=41% Similarity=0.487 Sum_probs=14.3
Q ss_pred cEEEecChhHHHHHHhc
Q psy11092 194 VATLGFSLGEITALTFS 210 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aA 210 (278)
-.++|||+|-+.|+.++
T Consensus 109 i~v~G~S~Gg~~al~~~ 125 (249)
T PRK10566 109 LAVGGASMGGMTALGIM 125 (249)
T ss_pred eeEEeecccHHHHHHHH
Confidence 48999999998887654
No 87
>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=28.84 E-value=94 Score=28.84 Aligned_cols=35 Identities=23% Similarity=0.204 Sum_probs=27.3
Q ss_pred CcEEEecChhHHHHHHhc-C------cCCHHHHHHHHHHHHH
Q psy11092 193 CVATLGFSLGEITALTFS-G------VFDYETALELIKIRSQ 227 (278)
Q Consensus 193 ~~~v~GhSlGEiaAa~aA-G------~ls~~da~~lv~~Rg~ 227 (278)
+|.++|-|.|-+.|+..+ + .++.++.+.+-..++.
T Consensus 41 fDli~GTStGgiia~~l~~~~~~g~~~~s~~e~~~~y~~~~~ 82 (329)
T cd07215 41 FDLVAGTSTGGILTCLYLCPNESGRPKFSAKEALNFYLERGN 82 (329)
T ss_pred cCeeeccCHHHHHHHHHhCCCCCCCCCcCHHHHHHHHHHhhH
Confidence 689999999998877643 2 4788998887766554
No 88
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.39 E-value=59 Score=29.45 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=19.2
Q ss_pred HHHHHhcCCCccccCcEEEecChhHHHHHH
Q psy11092 179 LEKLREERPAAIENCVATLGFSLGEITALT 208 (278)
Q Consensus 179 ~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~ 208 (278)
.+.++.++|+| |=.++|||+|-..|.-
T Consensus 55 v~~Ir~~QP~G---Py~L~G~S~GG~vA~e 81 (257)
T COG3319 55 VAAIRRVQPEG---PYVLLGWSLGGAVAFE 81 (257)
T ss_pred HHHHHHhCCCC---CEEEEeeccccHHHHH
Confidence 35566677777 4589999999766543
No 89
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=28.26 E-value=70 Score=26.83 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=14.3
Q ss_pred cEEEecChhHHHHHHhcC
Q psy11092 194 VATLGFSLGEITALTFSG 211 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aAG 211 (278)
-.++|||+|-..|+.++.
T Consensus 82 ~~l~G~S~Gg~~a~~~a~ 99 (257)
T TIGR03611 82 FHFVGHALGGLIGLQLAL 99 (257)
T ss_pred EEEEEechhHHHHHHHHH
Confidence 479999999988876553
No 90
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates. This family also includes the catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms.
Probab=28.24 E-value=1.1e+02 Score=24.97 Aligned_cols=35 Identities=26% Similarity=0.182 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCCCccccCcEEEecChhHHHHHHhc
Q psy11092 174 CSIGALEKLREERPAAIENCVATLGFSLGEITALTFS 210 (278)
Q Consensus 174 ~q~a~~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aA 210 (278)
.++++.+.|.+.++. +.++.+.|.|-|-+.|+..+
T Consensus 12 ~~~gvl~~l~~~~~~--~~~~~~~G~SaGa~~~~~~~ 46 (155)
T cd01819 12 YHAGVLSALAERGLL--DCVTYLAGTSGGAWVAATLY 46 (155)
T ss_pred HHHHHHHHHHHhCCc--cCCCEEEEEcHHHHHHHHHh
Confidence 567777888774431 23589999999999988877
No 91
>PLN00215 predicted protein; Provisional
Probab=27.68 E-value=22 Score=26.53 Aligned_cols=18 Identities=44% Similarity=0.767 Sum_probs=13.8
Q ss_pred CCCCcEEEEeCCCCcChh
Q psy11092 104 DPRDTSIIMFPGQGTQFV 121 (278)
Q Consensus 104 ~~~~~vaflFpGqGaq~~ 121 (278)
......+-+.||||.||.
T Consensus 49 skrrsaakmipgqggqwv 66 (110)
T PLN00215 49 SKRRSAAKMIPGQGGQWV 66 (110)
T ss_pred chhhhhhhccCCCCCeEE
Confidence 344556778999999995
No 92
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=27.57 E-value=68 Score=29.34 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=14.2
Q ss_pred cEEEecChhHHHHHHhc
Q psy11092 194 VATLGFSLGEITALTFS 210 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aA 210 (278)
-.++|||+|-..|+.++
T Consensus 199 ~~lvG~S~Gg~~a~~~a 215 (371)
T PRK14875 199 AHLVGHSMGGAVALRLA 215 (371)
T ss_pred EEEEeechHHHHHHHHH
Confidence 48999999998888655
No 93
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=27.30 E-value=71 Score=26.38 Aligned_cols=17 Identities=29% Similarity=0.673 Sum_probs=13.4
Q ss_pred cEEEecChhHHHHHHhc
Q psy11092 194 VATLGFSLGEITALTFS 210 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aA 210 (278)
-.++|||+|-..++..+
T Consensus 46 ~~~vG~S~Gg~~~~~~a 62 (230)
T PF00561_consen 46 INLVGHSMGGMLALEYA 62 (230)
T ss_dssp EEEEEETHHHHHHHHHH
T ss_pred eEEEEECCChHHHHHHH
Confidence 48999999987776544
No 94
>PHA02857 monoglyceride lipase; Provisional
Probab=26.82 E-value=43 Score=29.32 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=14.2
Q ss_pred cEEEecChhHHHHHHhc
Q psy11092 194 VATLGFSLGEITALTFS 210 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aA 210 (278)
-.++|||+|-..|+..+
T Consensus 99 ~~lvG~S~GG~ia~~~a 115 (276)
T PHA02857 99 VFLLGHSMGATISILAA 115 (276)
T ss_pred EEEEEcCchHHHHHHHH
Confidence 47999999998887655
No 95
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=26.73 E-value=43 Score=30.14 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=13.7
Q ss_pred cEEEecChhHHHHHHhc
Q psy11092 194 VATLGFSLGEITALTFS 210 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aA 210 (278)
-.++|||+|.+-++-..
T Consensus 86 liLiGHSIGayi~levl 102 (266)
T PF10230_consen 86 LILIGHSIGAYIALEVL 102 (266)
T ss_pred EEEEeCcHHHHHHHHHH
Confidence 48899999998887544
No 96
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=26.68 E-value=46 Score=29.26 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.0
Q ss_pred cEEEecChhHHHHHHhc
Q psy11092 194 VATLGFSLGEITALTFS 210 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aA 210 (278)
-.++|||||-+.|-.+.
T Consensus 87 vilVgHSmGGlvar~~l 103 (225)
T PF07819_consen 87 VILVGHSMGGLVARSAL 103 (225)
T ss_pred eEEEEEchhhHHHHHHH
Confidence 58999999998876554
No 97
>KOG2564|consensus
Probab=24.88 E-value=37 Score=31.56 Aligned_cols=19 Identities=21% Similarity=0.345 Sum_probs=14.8
Q ss_pred CcEEEecChhHHHHHHhcC
Q psy11092 193 CVATLGFSLGEITALTFSG 211 (278)
Q Consensus 193 ~~~v~GhSlGEiaAa~aAG 211 (278)
+-+++|||||--.|++.+-
T Consensus 147 ~iilVGHSmGGaIav~~a~ 165 (343)
T KOG2564|consen 147 QIILVGHSMGGAIAVHTAA 165 (343)
T ss_pred ceEEEeccccchhhhhhhh
Confidence 3689999999877777653
No 98
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=24.49 E-value=48 Score=26.96 Aligned_cols=17 Identities=35% Similarity=0.600 Sum_probs=13.2
Q ss_pred cEEEecChhHHHHHHhc
Q psy11092 194 VATLGFSLGEITALTFS 210 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aA 210 (278)
-.++|||+|...++..+
T Consensus 90 ~~l~G~S~Gg~~~~~~~ 106 (282)
T COG0596 90 VVLVGHSMGGAVALALA 106 (282)
T ss_pred eEEEEecccHHHHHHHH
Confidence 48999999977666554
No 99
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=23.66 E-value=52 Score=29.42 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=14.0
Q ss_pred cEEEecChhHHHHHHhc
Q psy11092 194 VATLGFSLGEITALTFS 210 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aA 210 (278)
-.++|||+|-+.+..++
T Consensus 89 v~lvGhS~GG~v~~~~a 105 (273)
T PLN02211 89 VILVGHSAGGLSVTQAI 105 (273)
T ss_pred EEEEEECchHHHHHHHH
Confidence 47999999998877655
No 100
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=23.53 E-value=55 Score=28.92 Aligned_cols=22 Identities=23% Similarity=0.078 Sum_probs=17.3
Q ss_pred cEEEecChhHHHHHHhcCcCCH
Q psy11092 194 VATLGFSLGEITALTFSGVFDY 215 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aAG~ls~ 215 (278)
-.+.|||+|-.-|.|++-.++.
T Consensus 86 i~v~GHSkGGnLA~yaa~~~~~ 107 (224)
T PF11187_consen 86 IYVTGHSKGGNLAQYAAANCDD 107 (224)
T ss_pred EEEEEechhhHHHHHHHHHccH
Confidence 3789999999888888755443
No 101
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=22.75 E-value=1.1e+02 Score=26.19 Aligned_cols=17 Identities=35% Similarity=0.436 Sum_probs=15.2
Q ss_pred cEEEecChhHHHHHHhc
Q psy11092 194 VATLGFSLGEITALTFS 210 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aA 210 (278)
..++|.|+|-+-|.+.+
T Consensus 61 ~~liGSSlGG~~A~~La 77 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLA 77 (187)
T ss_pred eEEEEEChHHHHHHHHH
Confidence 48999999999999876
No 102
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=22.51 E-value=58 Score=29.59 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=13.8
Q ss_pred cEEEecChhHHHHHHhc
Q psy11092 194 VATLGFSLGEITALTFS 210 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aA 210 (278)
-.++|||+|-..|+.++
T Consensus 136 i~l~GhSmGG~ia~~~a 152 (330)
T PLN02298 136 RFLYGESMGGAICLLIH 152 (330)
T ss_pred EEEEEecchhHHHHHHH
Confidence 48999999998886544
No 103
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=22.28 E-value=61 Score=27.52 Aligned_cols=12 Identities=0% Similarity=-0.033 Sum_probs=9.8
Q ss_pred CccccCcEEEecC
Q psy11092 188 AAIENCVATLGFS 200 (278)
Q Consensus 188 ~gi~p~~~v~GhS 200 (278)
.|..| |.|+|||
T Consensus 63 ~Gf~P-DvI~~H~ 74 (171)
T PF12000_consen 63 QGFVP-DVIIAHP 74 (171)
T ss_pred cCCCC-CEEEEcC
Confidence 56666 9999998
No 104
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=21.33 E-value=83 Score=27.61 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=25.3
Q ss_pred HHHHHHHhcCCCccccCcEEEecChhHHHHHHhcCcCC
Q psy11092 177 GALEKLREERPAAIENCVATLGFSLGEITALTFSGVFD 214 (278)
Q Consensus 177 a~~~ll~~~~p~gi~p~~~v~GhSlGEiaAa~aAG~ls 214 (278)
+..+.+++..|+. +...+.|+|+|.+.|+-++....
T Consensus 90 aaldW~~~~hp~s--~~~~l~GfSFGa~Ia~~la~r~~ 125 (210)
T COG2945 90 AALDWLQARHPDS--ASCWLAGFSFGAYIAMQLAMRRP 125 (210)
T ss_pred HHHHHHHhhCCCc--hhhhhcccchHHHHHHHHHHhcc
Confidence 4456677777763 11257999999999988876663
No 105
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.02 E-value=87 Score=29.57 Aligned_cols=32 Identities=31% Similarity=0.471 Sum_probs=22.2
Q ss_pred CCCcEEEEeCCCCcChhhhHHHHHhhCchHHHHHHHHHHHhCCCH
Q psy11092 105 PRDTSIIMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDL 149 (278)
Q Consensus 105 ~~~~vaflFpGqGaq~~gmg~~L~~~~p~~r~~i~~~~~~lg~~l 149 (278)
.-+|-++-|||||.|| .|-|.+.-.+ .||.++
T Consensus 328 GLGkPvi~fPg~GPQy----------~pgFA~rQ~r---LLG~sl 359 (412)
T COG4370 328 GLGKPVIGFPGQGPQY----------NPGFAERQQR---LLGASL 359 (412)
T ss_pred ccCCceeecCCCCCCc----------ChHHHHHHHH---Hhccee
Confidence 3467788999999999 7777665332 345554
No 106
>cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants. Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.
Probab=20.96 E-value=1.7e+02 Score=27.55 Aligned_cols=35 Identities=11% Similarity=0.152 Sum_probs=26.9
Q ss_pred CcEEEecChhHHHHHHhc-C------cCCHHHHHHHHHHHHH
Q psy11092 193 CVATLGFSLGEITALTFS-G------VFDYETALELIKIRSQ 227 (278)
Q Consensus 193 ~~~v~GhSlGEiaAa~aA-G------~ls~~da~~lv~~Rg~ 227 (278)
+|.++|-|.|-+.|+..+ | .++.+|.+.+-..++.
T Consensus 44 FDliaGTStGgiiA~~la~~~~~~~p~~~~~e~~~~y~~~~~ 85 (349)
T cd07214 44 FDVIAGTSTGGLITAMLTAPNENKRPLFAAKDIVQFYLENGP 85 (349)
T ss_pred CCEEeeCCHHHHHHHHHhcCCCCCCCccCHHHHHHHHHHhhH
Confidence 689999999998876655 3 3788998887766553
No 107
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=20.60 E-value=67 Score=28.99 Aligned_cols=20 Identities=15% Similarity=0.375 Sum_probs=13.6
Q ss_pred ccccCcEEEecChhHHHHHHh
Q psy11092 189 AIENCVATLGFSLGEITALTF 209 (278)
Q Consensus 189 gi~p~~~v~GhSlGEiaAa~a 209 (278)
+|+. --++|||+|-+++.+.
T Consensus 101 ~~~~-~N~VGHSmGg~~~~~y 120 (255)
T PF06028_consen 101 HFKK-FNLVGHSMGGLSWTYY 120 (255)
T ss_dssp --SE-EEEEEETHHHHHHHHH
T ss_pred CCCE-EeEEEECccHHHHHHH
Confidence 4444 3689999998887653
No 108
>KOG3847|consensus
Probab=20.49 E-value=39 Score=31.92 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=15.6
Q ss_pred cEEEecChhHHHHHHhcCc
Q psy11092 194 VATLGFSLGEITALTFSGV 212 (278)
Q Consensus 194 ~~v~GhSlGEiaAa~aAG~ 212 (278)
.+|+|||+|--+++..++.
T Consensus 243 ~aViGHSFGgAT~i~~ss~ 261 (399)
T KOG3847|consen 243 AAVIGHSFGGATSIASSSS 261 (399)
T ss_pred hhheeccccchhhhhhhcc
Confidence 3799999999888877763
No 109
>PLN03090 auxin-responsive family protein; Provisional
Probab=20.01 E-value=1.3e+02 Score=23.42 Aligned_cols=39 Identities=18% Similarity=0.272 Sum_probs=24.7
Q ss_pred EEEEeCCCCcChhhhHHHHHhhCchHHHHHHHHHHHhCCC
Q psy11092 109 SIIMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFD 148 (278)
Q Consensus 109 vaflFpGqGaq~~gmg~~L~~~~p~~r~~i~~~~~~lg~~ 148 (278)
...|+-|.+..-.-+-.+.+ .+|.|++.++.+.+-+|++
T Consensus 44 ~~aVyVG~~~~RfvVp~~~L-~hP~F~~LL~~aeeEfGf~ 82 (104)
T PLN03090 44 HFPVYVGENRSRYIVPISFL-THPEFQSLLQQAEEEFGFD 82 (104)
T ss_pred cEEEEECCCCEEEEEEHHHc-CCHHHHHHHHHHHHHhCCC
Confidence 44445565432222222333 4899999999999888875
Done!