RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11092
(278 letters)
>2c2n_A Malonyl COA-acyl carrier protein transacylase; fatty acid synthase,
lipid synthesis, mitochondrion transfer transferase;
HET: AE4; 1.55A {Homo sapiens}
Length = 339
Score = 199 bits (509), Expect = 1e-62
Identities = 76/184 (41%), Positives = 106/184 (57%), Gaps = 1/184 (0%)
Query: 87 HYDPRQSQAQHSLRPKTDPRDTSIIMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILK 146
H+ S+++FPGQG+Q VGMG L+ P ++L+ A +L
Sbjct: 5 HHHSSGVDLGTENLYFQSMGQCSVLLFPGQGSQVVGMGRGLLN-YPRVRELYAAARRVLG 63
Query: 147 FDLLKLCLEGPASELNKTIHAQAAVFVCSIGALEKLREERPAAIENCVATLGFSLGEITA 206
+DLL+L L GP L++T+H Q A+FV S+ A+EKL +P+ IENCVA GFS+GE A
Sbjct: 64 YDLLELSLHGPQETLDRTVHCQPAIFVASLAAVEKLHHLQPSVIENCVAAAGFSVGEFAA 123
Query: 207 LTFSGVFDYETALELIKIRSQAMQLACEIAPGGMASVMYGPDSQLNLAMKRAKEWCVDRG 266
L F+G ++ L +KIR++AMQ A E P GM SV+ P S+ N A A+E C G
Sbjct: 124 LVFAGAMEFAEGLYAVKIRAEAMQEASEAVPSGMLSVLGQPQSKFNFACLEAREHCKSLG 183
Query: 267 IPEP 270
I P
Sbjct: 184 IENP 187
>3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty
acid synthesis, malonyl-COA: acyl carrier protein TRAN
(MCAT), FABD; 1.46A {Staphylococcus aureus}
Length = 316
Score = 161 bits (411), Expect = 2e-48
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
Query: 112 MFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAAV 171
+FPGQG Q VGM DL A ++ A+ L FD+L+ +L +T + Q A+
Sbjct: 15 IFPGQGAQKVGMAQDLFNNNDQATEILTSAAKTLDFDILETMFTDEEGKLGETENTQPAL 74
Query: 172 FVCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQL 231
S L L+ P G SLGE ++L + V +E A+++++ R Q M
Sbjct: 75 LTHSSALLAALKNLNPDF----TM--GHSLGEYSSLVAADVLSFEDAVKIVRKRGQLMAQ 128
Query: 232 ACEIAPGGMASVM 244
A G MA+V+
Sbjct: 129 AFPTGVGSMAAVL 141
>3qat_A Malonyl COA-acyl carrier protein transacylase; seattle structural
genomics center for infectious disease, S bartonella,
CAT-scratch disease; 1.60A {Bartonella henselae}
Length = 318
Score = 161 bits (409), Expect = 6e-48
Identities = 45/134 (33%), Positives = 66/134 (49%)
Query: 111 IMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAA 170
FPGQG+Q +GMG L + A+ +FEE L L + EGPA L T +AQ A
Sbjct: 9 FTFPGQGSQLIGMGKVLTEQFVAARMVFEEVDDALSEKLSDIIFEGPADVLTLTANAQPA 68
Query: 171 VFVCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQ 230
+ S+ + + + + G SLGE +AL +G F L++IR AMQ
Sbjct: 69 LMAVSMAVIRVMEQLGLNVEKKVKFVAGHSLGEYSALCAAGTFSLTDTARLLRIRGNAMQ 128
Query: 231 LACEIAPGGMASVM 244
A + G MA+++
Sbjct: 129 AAVAVGEGSMAALI 142
>3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880, FABD,
xanthomonas oryzae PV. ORYZ KACC10331, transferase;
1.60A {Xanthomonas oryzae PV} PDB: 3een_A 3r97_A*
Length = 314
Score = 158 bits (403), Expect = 4e-47
Identities = 46/133 (34%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Query: 112 MFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAAV 171
+FPGQG+Q +GM +L + P ++ F EAS DL L GP LN+T + Q A+
Sbjct: 9 VFPGQGSQSLGMLAELSELHPQIRETFAEASEGAGVDLWALSQGGPEEMLNRTEYTQPAL 68
Query: 172 FVCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQL 231
+ +R +A G SLGE TAL +GV L+++R Q MQ
Sbjct: 69 LAAGVAVWRLWTAQRGQRPA-LLA--GHSLGEYTALVAAGVLSLHDGAHLVRLRGQFMQA 125
Query: 232 ACEIAPGGMASVM 244
A G MA+V+
Sbjct: 126 AAPAGVGAMAAVL 138
>1mla_A Malonyl-coenzyme A acyl carrier protein transacylase;
acyltransferase; 1.50A {Escherichia coli} SCOP: c.19.1.1
d.58.23.1 PDB: 2g2o_A 2g1h_A 2g2y_A 2g2z_A* 3h0p_A
3hjv_A*
Length = 309
Score = 158 bits (402), Expect = 5e-47
Identities = 52/134 (38%), Positives = 78/134 (58%), Gaps = 3/134 (2%)
Query: 111 IMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAA 170
+FPGQG+Q VGM D+ + P+ ++ F EASA L +DL L +GPA ELNKT Q A
Sbjct: 6 FVFPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDLWALTQQGPAEELNKTWQTQPA 65
Query: 171 VFVCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQ 230
+ S+ +++ A +A G SLGE +AL +GV D+ A+ L+++R + MQ
Sbjct: 66 LLTASVALYRVWQQQGGKAPA-MMA--GHSLGEYSALVCAGVIDFADAVRLVEMRGKFMQ 122
Query: 231 LACEIAPGGMASVM 244
A G MA+++
Sbjct: 123 EAVPEGTGAMAAII 136
>3ptw_A Malonyl COA-acyl carrier protein transacylase; structural genomics,
protein structure initiative; 2.10A {Clostridium
perfringens}
Length = 336
Score = 159 bits (404), Expect = 5e-47
Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 8/135 (5%)
Query: 112 MFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAAV 171
+F GQG Q+VGMG + +K++F+ +S L D+ +LC P LNKT Q A+
Sbjct: 7 LFAGQGAQYVGMGKEFFDNFEESKEVFKRSSEALGIDMEELCFNDPEGLLNKTEFTQPAI 66
Query: 172 FVCSIGALEKLREE--RPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAM 229
++ L L + + G SLGE +AL SG ++E ++L+K R + M
Sbjct: 67 ITTNMAILTALDKLGVKSHI----SC--GLSLGEYSALIHSGAINFEDGVKLVKKRGKFM 120
Query: 230 QLACEIAPGGMASVM 244
Q A GGM +V+
Sbjct: 121 QEAVAEGIGGMVAVL 135
>2qc3_A MCT, malonyl COA-acyl carrier protein transacylase; malonyl-COA:ACP
transacylase, , nucleophili fatty acids biosynthesis;
2.30A {Mycobacterium tuberculosis} PDB: 2qj3_A
Length = 303
Score = 158 bits (401), Expect = 6e-47
Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 4/142 (2%)
Query: 111 IMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAA 170
++ PGQG+Q GM ++ LP A D S DL +L E+ T AQ
Sbjct: 5 LLAPGQGSQTEGMLSPWLQ-LPGAADQIAAWSKAADLDLARLGTTASTEEITDTAVAQPL 63
Query: 171 VFVCSIGALEKLREERPAAIE-NCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAM 229
+ ++ A ++L A + VA G S+GEI A +GV + A+ L R M
Sbjct: 64 IVAATLLAHQELARRCVLAGKDVIVA--GHSVGEIAAYAIAGVIAADDAVALAATRGAEM 121
Query: 230 QLACEIAPGGMASVMYGPDSQL 251
AC P GM++V+ G ++++
Sbjct: 122 AKACATEPTGMSAVLGGDETEV 143
>3tqe_A Malonyl-COA-[acyl-carrier-protein] transacylase; fatty
acid/phospholipid metabolism, transferase; HET: MSE;
1.50A {Coxiella burnetii}
Length = 316
Score = 157 bits (400), Expect = 9e-47
Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 9/137 (6%)
Query: 111 IMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAA 170
+FPGQG+Q +GM +L P+ + F++AS+ L +DL L GP L++T Q A
Sbjct: 10 FVFPGQGSQHLGMLAELGLQQPIVLETFQQASSALAYDLWALVQHGPQERLDQTQFTQPA 69
Query: 171 VFVCSIGALEKLREE---RPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQ 227
+ + +P +A G SLGE AL +G +E A++L++ R Q
Sbjct: 70 LLTADVAIFRCWEALGGPKPQV----MA--GHSLGEYAALVCAGALKFEEAVKLVEKRGQ 123
Query: 228 AMQLACEIAPGGMASVM 244
MQ A + G M +++
Sbjct: 124 YMQEAVPVGEGAMGAII 140
>3im8_A Malonyl acyl carrier protein transacylase; fatty acid synthesis,
malonyl-COA, acyl carrier protein TRAN (MCAT), FABD,
acyltransferase; 2.10A {Streptococcus pneumoniae}
Length = 307
Score = 154 bits (393), Expect = 1e-45
Identities = 46/133 (34%), Positives = 70/133 (52%), Gaps = 5/133 (3%)
Query: 112 MFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAAV 171
+F GQG Q++GMG D P+ K+ + AS +L +DL L + +LN+T + Q A+
Sbjct: 7 LFAGQGAQYLGMGRDFYDQYPIVKETIDRASQVLGYDLRYLI-DTEEDKLNQTRYTQPAI 65
Query: 172 FVCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQL 231
S+ L+E+ + VA G SLGE +AL SG D+E A+ L+ R M+
Sbjct: 66 LATSVAIYRLLQEKGYQP--DMVA--GLSLGEYSALVASGALDFEDAVALVAKRGAYMEE 121
Query: 232 ACEIAPGGMASVM 244
A G M +V+
Sbjct: 122 AAPADSGKMVAVL 134
>1nm2_A Malonyl COA:acyl carrier protein malonyltransfera; alpha/beta
hydrolase-like core; 2.00A {Streptomyces coelicolor}
SCOP: c.19.1.1 d.58.23.1 PDB: 2cdh_4 2cf2_B
Length = 317
Score = 155 bits (393), Expect = 1e-45
Identities = 45/148 (30%), Positives = 63/148 (42%), Gaps = 10/148 (6%)
Query: 111 IMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAA 170
++ PGQG Q G D + LP A D S + DL + A E+ T AQ
Sbjct: 5 LVAPGQGAQTPGFLTDWLA-LPGAADRVAAWSDAIGLDLAHFGTKADADEIRDTSVAQPL 63
Query: 171 VFVCSIGALEKLREERPAAIENC-------VATLGFSLGEITALTFSGVFDYETALELIK 223
+ I + L + A VA G S+GEITA F+GV D AL L++
Sbjct: 64 LVAAGILSAAALGTQTSVADATGPGFTPGAVA--GHSVGEITAAVFAGVLDDTAALSLVR 121
Query: 224 IRSQAMQLACEIAPGGMASVMYGPDSQL 251
R AM A + GM++++ G
Sbjct: 122 RRGLAMAEAAAVTETGMSALLGGDPEVS 149
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid,
acyl-carrier-protein S-malonyltransferase,
acyltransferase, transferase; 2.05A {Burkholderia
pseudomallei 1710B}
Length = 318
Score = 153 bits (390), Expect = 3e-45
Identities = 49/136 (36%), Positives = 73/136 (53%), Gaps = 10/136 (7%)
Query: 112 MFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAAV 171
+FPGQG+Q VGM + ++ +EAS L D+ KL +GPA ELN T + Q +
Sbjct: 14 VFPGQGSQSVGMLNAFADV-AVVRETLDEASDALGQDIGKLIADGPADELNLTTNTQPVM 72
Query: 172 FVCSIGALEKLREE---RPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQA 228
+ ++ +P+ VA G SLGE TAL +G + AL L++ R+QA
Sbjct: 73 LTAAYACYRAWQQAGGAQPSI----VA--GHSLGEYTALVAAGAIAFRDALPLVRFRAQA 126
Query: 229 MQLACEIAPGGMASVM 244
MQ A + GGMA+++
Sbjct: 127 MQTAVPVGVGGMAAIL 142
>2h1y_A Malonyl coenzyme A-acyl carrier protein transacyl; FABD, MCAT,
transferase; 2.50A {Helicobacter pylori}
Length = 321
Score = 153 bits (389), Expect = 6e-45
Identities = 47/135 (34%), Positives = 74/135 (54%), Gaps = 4/135 (2%)
Query: 111 IMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAA 170
++FPGQG+Q +GMG + +AK+LFE AS LK D+ K E L ++ + Q A
Sbjct: 17 LLFPGQGSQCIGMGKSFYEGHTLAKELFERASNALKVDMKKTLFEEN-ELLKESAYTQPA 75
Query: 171 VFVCSIGALEKLREERPAAIE-NCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAM 229
+++ S A + L ++ ++ G SLGE++A++ SG D+E AL+L R + M
Sbjct: 76 IYLVSYIAYQLLNKQANGGLKPVFAL--GHSLGEVSAVSLSGALDFEKALKLTHQRGKMM 133
Query: 230 QLACEIAPGGMASVM 244
Q AC M V+
Sbjct: 134 QEACANKDASMMVVL 148
>3sbm_A DISD protein, DSZD; transferase; HET: P6G; 1.35A {Sorangium
cellulosum} PDB: 3rgi_A
Length = 281
Score = 151 bits (385), Expect = 8e-45
Identities = 54/153 (35%), Positives = 79/153 (51%), Gaps = 10/153 (6%)
Query: 112 MFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAAV 171
MFPGQG+Q GMG L P L A +L + + LC + P L++T Q A+
Sbjct: 5 MFPGQGSQAKGMGRALFDAFP---ALTARADGVLGYSIRALCQDDPDQRLSQTQFTQPAL 61
Query: 172 FVCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQL 231
+V + + K REE + +A G SLGE +AL +GVFD+ET L L+K R + M
Sbjct: 62 YVVNALSYLKRREEEAPP--DFLA--GHSLGEFSALFAAGVFDFETGLALVKKRGELMGD 117
Query: 232 ACEIAPGGMASVMYGPDSQLNLAMKRAKEWCVD 264
A GGMA+V+ + ++ + + VD
Sbjct: 118 A---RGGGMAAVIGLDEERVRELLDQNGATAVD 147
>2cuy_A Malonyl COA-[acyl carrier protein] transacylase; transferase,
structural genomics, NPPSFA; 2.10A {Thermus
thermophilus}
Length = 305
Score = 148 bits (377), Expect = 2e-43
Identities = 52/136 (38%), Positives = 69/136 (50%), Gaps = 10/136 (7%)
Query: 112 MFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAAV 171
+FPGQG+ VGMG L + P AK++ + A A L LLKL EGP L T + Q A+
Sbjct: 5 LFPGQGSHRVGMGRALYEASPAAKEVLDRAEAALP-GLLKLMWEGPEEALTLTENQQPAL 63
Query: 172 FVCSIGALEKLREE---RPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQA 228
A E PA A G SLGE TA +G + E AL L+++R +
Sbjct: 64 LAAGYAAYRAFLEAGGKPPAL----AA--GHSLGEWTAHVAAGTLELEDALRLVRLRGRY 117
Query: 229 MQLACEIAPGGMASVM 244
MQ A + G MA+V+
Sbjct: 118 MQEAVPVGEGAMAAVL 133
>3g87_A Malonyl COA-acyl carrier protein transacylase; ssgcid, niaid,
decode biostructures, dried seaweed, acyltran
transferase; 2.30A {Burkholderia pseudomallei}
Length = 394
Score = 151 bits (383), Expect = 2e-43
Identities = 50/156 (32%), Positives = 74/156 (47%), Gaps = 15/156 (9%)
Query: 112 MFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAAV 171
MFPGQG+Q GMGG L DL +A A+L + + LC++ P EL +T Q A+
Sbjct: 10 MFPGQGSQAKGMGGALFDR---FADLTAQADAVLGYSIRALCVDDPRDELGRTQFTQPAL 66
Query: 172 FVCSIGALEKLREE---RPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQA 228
+V + E+ P +A G SLGE AL +G FD+ET L+L+ R++
Sbjct: 67 YVVNALTYYAKCEDSGETPDF----LA--GHSLGEFNALLAAGCFDFETGLKLVARRAEL 120
Query: 229 MQLACEIAPGGMASVMYGPDSQLNLAMKRAKEWCVD 264
M A G MA+++ Q+ +
Sbjct: 121 MSQAR---DGAMAAIVNASREQIERTLDEHGLVDTA 153
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 131 bits (331), Expect = 1e-34
Identities = 43/225 (19%), Positives = 82/225 (36%), Gaps = 42/225 (18%)
Query: 58 KELLENSTTYVGETVETEEDVW--ASKPYPKHYDPRQSQAQHSLRP--KTDPRDTSIIMF 113
+L + S + +DVW A + Y S+ +P I F
Sbjct: 1633 MDLYKTS--------KAAQDVWNRADNHFKDTYG-------FSILDIVINNPV-NLTIHF 1676
Query: 114 PGQGTQ-----FVGMGGD-LIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHA 167
G+ + + M + ++ + +F+E + L+ T
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKE----INEHSTSYTFRSEKGLLSATQFT 1732
Query: 168 QAAVFVCSIGALEKLREERPAAIENCVATLGFSLGEITALT-FSGVFDYETALELIKIRS 226
Q A+ + A E L+ + + A G SLGE AL + V E+ +E++ R
Sbjct: 1733 QPALTLMEKAAFEDLKSKGLIPADATFA--GHSLGEYAALASLADVMSIESLVEVVFYRG 1790
Query: 227 QAMQLACE-----IAPGGMASVMYGPDSQLNLAMKR-AKEWCVDR 265
MQ+A + GM ++ P ++ + + A ++ V+R
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAI--NP-GRVAASFSQEALQYVVER 1832
Score = 67.0 bits (163), Expect = 1e-12
Identities = 54/317 (17%), Positives = 104/317 (32%), Gaps = 98/317 (30%)
Query: 40 ESNAKDENPPEKCEVLTAK------------------ELLENS-----TTYVGET----- 71
E A D+ P E L K ++L Y+
Sbjct: 46 EGFAADDEPTTPAE-LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL 104
Query: 72 -----VETEEDVWASKPYPKHY--------DPRQSQAQHSLRPKTDPRDTSII-MFPGQG 117
E + + +K K+Y P ++ +L + ++ +F GQG
Sbjct: 105 AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
Query: 118 T--------QFVGMGGDLIKT-LPMAKDLFEEASAILK----------------FDLLKL 152
+ DL +T + DL + ++ L ++L+
Sbjct: 165 NTDDYFEELR------DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 153 CLEGPASELNKTIHAQAAVFVCS---IGALE--------KLREERPAAIENCV-ATLGFS 200
LE P++ +K + S IG ++ KL P + + + G S
Sbjct: 219 -LENPSNTPDKDYLLSIPI---SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHS 274
Query: 201 LGEITALTFSGVFDYETALELIKIRSQAMQLACEIAPGGMASVMYGPDSQLNLAMKRAKE 260
G +TA+ + +E+ ++ +A+ + I G+ P++ L ++
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVR---KAITVLFFI---GVRCYEAYPNTSLPPSI-LEDS 327
Query: 261 WCVDRGIPEPELSSISG 277
+ G+P P L SIS
Sbjct: 328 LENNEGVPSPML-SISN 343
Score = 33.9 bits (77), Expect = 0.059
Identities = 37/205 (18%), Positives = 66/205 (32%), Gaps = 64/205 (31%)
Query: 1 MSLVANLFKHILRNHPSTSIRG-NSKLNLNSKCICRSISNESNAKDENPPEKCEVLT--A 57
M ++NL + ++++ + NS L + + IS N V++
Sbjct: 338 MLSISNLTQEQVQDY----VNKTNSHLPAGKQ-V--EISL-VNGAKNL------VVSGPP 383
Query: 58 KELLENSTTYVGETVETEEDVWASKPYPKHYDPRQSQAQHSLRPKTDPRDTSIIMFPGQG 117
+ L + T + D QS+ S R + F
Sbjct: 384 QSLYGLNLTLRKAKAPSGLD--------------QSRIPFSERK---LK------F---S 417
Query: 118 TQFVGMGGDLIKTLPMAK----DLFEEASAILKFDLLKLCLEGPASELNKTIHAQAAVFV 173
+F LP+A L AS ++ DL+K + A ++ Q V+
Sbjct: 418 NRF----------LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDI------QIPVYD 461
Query: 174 CSIGA-LEKLREERPAAIENCVATL 197
G+ L L I +C+ L
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRL 486
>4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A
4amp_A 4amo_A
Length = 401
Score = 90.1 bits (224), Expect = 7e-21
Identities = 40/140 (28%), Positives = 55/140 (39%), Gaps = 21/140 (15%)
Query: 112 MFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAAV 171
+FPGQ G L L +A A D +E T AQ A+
Sbjct: 102 LFPGQAAPVHADRGAL-------GHLLGDADAGTGSDPDSG---VKPAEPVDTAVAQPAI 151
Query: 172 FVCSIGALEKLREE---RPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQA 228
S+ A + + RP LG SLGE+ AL+++G D + L L + R +A
Sbjct: 152 IADSL-AGIRWLDRLGARPVGA------LGHSLGELAALSWAGALDADDTLALARARGEA 204
Query: 229 MQLACEIAPGGMASVMYGPD 248
M A AP GM S+
Sbjct: 205 MS-AATEAPSGMLSLRADLA 223
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_G* 3hmj_G*
Length = 2051
Score = 88.2 bits (218), Expect = 1e-19
Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 10/141 (7%)
Query: 111 IMFPGQGTQFVGMG--GDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQ 168
I F G+ + + + +T+ K E+ + L+ T Q
Sbjct: 1719 IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ 1778
Query: 169 AAVFVCSIGALEKLREERPAAIENCVATLGFSLGEITALT-FSGVFDYETALELIKIRSQ 227
A+ + A E L+ + + A G SLGE AL + V E+ +E++ R
Sbjct: 1779 PALTLMEKAAFEDLKSKGLIPADATFA--GHSLGEYAALASLADVMSIESLVEVVFYRGM 1836
Query: 228 AMQLACE-----IAPGGMASV 243
MQ+A + GM ++
Sbjct: 1837 TMQVAVPRDELGRSNYGMIAI 1857
Score = 65.8 bits (160), Expect = 3e-12
Identities = 26/186 (13%), Positives = 52/186 (27%), Gaps = 51/186 (27%)
Query: 110 IIMFPGQGTQFVGMGG--DLIKT-LPMAKDLFEEASAILK------FDLLKLCLEG---- 156
+ +F GQG DL +T + DL + ++ L D K+ +G
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 157 ----------PASELNKTIHAQAAVFVCSIGALEKLREE---RPAAI-ENCVATLGFSLG 202
L + + V + + P + G S G
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 203 EITALTFSGVFDYETALELIK---------------------IRSQAMQLACEI---APG 238
+TA+ + +E+ ++ + ++ + E P
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 239 GMASVM 244
M S+
Sbjct: 337 PMLSIS 342
Score = 50.4 bits (120), Expect = 3e-07
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 7/60 (11%)
Query: 111 IMFPGQGTQFVGMGGDLIKTLPMAKDLFEEA----SAILKFDLLKLCLEGPASELNKTIH 166
+F GQG+Q GMG DL KT A+D++ A F +L + + P + TIH
Sbjct: 1664 FVFTGQGSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVN---LTIH 1720
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 86.1 bits (213), Expect = 4e-19
Identities = 36/160 (22%), Positives = 60/160 (37%), Gaps = 23/160 (14%)
Query: 112 MFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILK---FDLLKLCLEGPASELNKTIHAQ 168
+ G G Q+ GMG L++ +D + LK + L L + L+ + +
Sbjct: 495 ICSGMGAQWQGMGLSLMRL-DRFRDSILRSDQALKPLGLRVSDLLLSTDEAVLDDIVSSF 553
Query: 169 AAVFVCSIGALEKLREE---RPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIR 225
++ I AL L +P I +G SLGE+ G E A+ R
Sbjct: 554 VSLTSIQI-ALIDLLTSLGLQPDGI------IGHSLGEVACGYADGCLTQEEAVLSSYWR 606
Query: 226 SQAMQLACEIAPGGMASVMYGPDSQLNLAMKRAKEWCVDR 265
++ + PG MA+V L+ + K+ C
Sbjct: 607 GYCIK-EANVLPGAMAAV--------GLSWEECKQRCPPG 637
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; HET:
FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Length = 2060
Score = 85.9 bits (212), Expect = 5e-19
Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 9/144 (6%)
Query: 101 PKTDPRDTSIIMFPGQGTQFVGMGGDLIKT--LPMAKDLFEEASAILKFDLLKLCLEGPA 158
PK ++ M + + + +F+E + P+
Sbjct: 1724 PKELTVHFGGPRGKIIRQNYMSMTFETVNADGSIKTEKIFKEVDE----NSTSYTYRSPS 1779
Query: 159 SELNKTIHAQAAVFVCSIGALEKLREERPAAIENCVATLGFSLGEITALT-FSGVFDYET 217
L+ T Q A+ + + E +R + ++ A G SLGE +AL + V E+
Sbjct: 1780 GLLSATQFTQPALTLMEKASFEDMRSKGLVQRDSTFA--GHSLGEYSALVALADVMPIES 1837
Query: 218 ALELIKIRSQAMQLACEIAPGGMA 241
+ ++ R MQ+A E G +
Sbjct: 1838 LVSVVFYRGLTMQVAVERDEQGRS 1861
Score = 68.9 bits (168), Expect = 2e-13
Identities = 37/247 (14%), Positives = 69/247 (27%), Gaps = 71/247 (28%)
Query: 94 QAQHSLRPKTDPRDTSII------------MFPGQGTQFVGMGG--DLIKTLP-MAKDLF 138
+ + P D+++ +F GQG ++ T P +DL
Sbjct: 124 AGRAAAGRAPKPYDSALFRAAAENNVKIYSIFGGQGNIEEYFDELREIYTTYPSFVEDLI 183
Query: 139 EEASAILK---------------FDLLKLCLEG----PASELNKTIHAQAAVFVCSIG-- 177
+ +L+ D+L+ L + + + +
Sbjct: 184 TSIAELLQSLAREWDAVKQYPKGLDILQWLHNPESQPDTDYLVSAPVSFPLIGLVQLAHY 243
Query: 178 --ALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYET-------ALELIKIRSQA 228
+ L E +E T G S G + A + ++ A+EL+
Sbjct: 244 MITCKTLGREPGELLERFSGTTGHSQGIVVAAAIATARTWDEFATAAKRAVELLFWIGLR 303
Query: 229 MQLA-----------------CEIAPGGMASVMYGPDSQLNLAMKRAKEWC--VDRGIPE 269
Q A E P M S+ +L +E ++ +PE
Sbjct: 304 SQQAYPRTSLAPSTLQDSVENGEGTPTPMLSI-------RDLTRSAVQEHIDATNQHLPE 356
Query: 270 PELSSIS 276
IS
Sbjct: 357 DRHIGIS 363
Score = 58.9 bits (142), Expect = 6e-10
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 112 MFPGQGTQFVGMGGDLIKTLPMAKDLFEEA----SAILKFDLLKLCLEGPASELNKTIHA 167
+F GQG+Q GMG DL T P+AK++++ A F ++ + P
Sbjct: 1675 VFTGQGSQEQGMGMDLYATSPVAKEVWDRADKHFRENYGFSIIDIVKNNPKELTVHFGGP 1734
Query: 168 QAAVF 172
+ +
Sbjct: 1735 RGKII 1739
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 82.6 bits (205), Expect = 6e-18
Identities = 36/137 (26%), Positives = 55/137 (40%), Gaps = 15/137 (10%)
Query: 113 FPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILK---FDLLKLCLEGPASELNKTIHAQA 169
G GTQ+ GMG L++ +D + +K + +L L S + +H+
Sbjct: 498 CSGMGTQWRGMGLSLMRL-DRFRDSILRSDEAVKPFGLKVSQLLLSTDESTFDDIVHSFV 556
Query: 170 AVFVCSIGALEKLREE---RPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRS 226
++ I L L RP I +G SLGE+ G E A+ R
Sbjct: 557 SLTAIQI-GLIDLLSCMGLRPDGI------VGHSLGEVACGYADGCLSQEEAVLAAYWRG 609
Query: 227 QAMQLACEIAPGGMASV 243
Q ++ A PG MA+V
Sbjct: 610 QCIKEAHLP-PGAMAAV 625
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 76.5 bits (189), Expect = 7e-16
Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 19/141 (13%)
Query: 112 MFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILK----FDLLK-LCLEGPASELNKTIH 166
+FPGQG+Q+ GMG +L+ + P+ + + + L A L++
Sbjct: 537 LFPGQGSQWAGMGAELLSSSPVFAGKIRACDESMAPMQDWKVSDVLRQAPGAPGLDRVDV 596
Query: 167 AQAAVFVCSIGALEKLREE---RPAAIENCVATLGFSLGEITALTFSGVFDYETALELIK 223
Q +F + +L +L PAA+ +G S GEI A +G E A +L+
Sbjct: 597 VQPVLFAVMV-SLAELWRSYGVEPAAV------VGHSQGEIAAAHVAGALTLEDAAKLVV 649
Query: 224 IRSQAMQ-LACEIAPGGMASV 243
RS+ M+ L+ GGMA+V
Sbjct: 650 GRSRLMRSLS---GEGGMAAV 667
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 75.0 bits (185), Expect = 2e-15
Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 20/140 (14%)
Query: 112 MFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILK----FDLLKLCLEGPASELNKTIHA 167
+FPGQG Q+ GM DL++ + D + L + L L L G A L++
Sbjct: 556 VFPGQGAQWQGMARDLLRESQVFADSIRDCERALAPHVDWSLTDL-LSG-ARPLDRVDVV 613
Query: 168 QAAVFVCSIGALEKLREE---RPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKI 224
Q A+F + +L L PAA+ +G S GEI A +G E A +L+ +
Sbjct: 614 QPALFAVMV-SLAALWRSHGVEPAAV------VGHSQGEIAAAHVAGALTLEDAAKLVAV 666
Query: 225 RSQAMQ-LACEIAPGGMASV 243
RS+ ++ L GGMAS
Sbjct: 667 RSRVLRRLG---GQGGMASF 683
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.015
Identities = 43/291 (14%), Positives = 74/291 (25%), Gaps = 90/291 (30%)
Query: 7 LFKHILRNHPSTSIRG--NSKLNLNSKCICRSISNESNAKDENPPEKCEVLTAKELLENS 64
LF L + ++ L +N K + I E P +
Sbjct: 67 LFW-TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-----PSM-----------MT 109
Query: 65 TTYVGETVETEEDVWASKPYPKHYDPRQSQAQHSLRPKTDPRDTSIIMFPGQGTQFVGMG 124
Y+ + D + + K+ R L+P R + + P + G+
Sbjct: 110 RMYIEQRDRLYNDN---QVFAKYNVSR-------LQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 125 G------------DLIKTLPMAKDLF-------EEASAILKFDLLKLC--LEGPASELNK 163
G M +F +L+ L KL ++ + +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM-LQKLLYQIDPNWTSRSD 218
Query: 164 TIHAQAAVFVCSIGALEKLREERPAAIENCVATL----------GFSLGEITALT--FSG 211
L +L + +P ENC+ L F+L LT F
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKP--YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 212 VFDYETALELIKIR----------SQAMQL---------------ACEIAP 237
V D+ +A I + L P
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Score = 31.4 bits (70), Expect = 0.39
Identities = 35/280 (12%), Positives = 73/280 (26%), Gaps = 86/280 (30%)
Query: 3 LVANLFKHILRNHPSTSIR----GNSKLNLNSKCICRSISNESNA-------------KD 45
++ +R+ +T KL I S++ A
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLT---TIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 46 ENPPEKCEVLTAKELL-ENSTTYVGETVETE--------EDVWASKPYPKH-YD------ 89
+ P +L L+ + V + + K
Sbjct: 385 AHIPTI--LL---SLIWFDVIKSDVMVVVNKLHKYSLVEKQ---PKESTISIPSIYLELK 436
Query: 90 --PRQSQAQH-------SLRPKTDPRDTSIIMFPGQGTQFVG---MGGDLIKTLPMAKDL 137
A H ++ D D +G + + + + + +
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 138 FEEASAILKFDLL--KLCLEGPASELNKTIHAQAAVFVCSIGALEKLREERPAAIENCVA 195
F L F L K+ + A + +I + L++L+ +P +N
Sbjct: 497 F------LDFRFLEQKIRHDSTAWNASGSI----------LNTLQQLKFYKPYICDNDPK 540
Query: 196 TLGFSLGEITALTFSGVFDYETALELIKIRSQA---MQLA 232
+ L F + E L I S+ +++A
Sbjct: 541 ---YERLVNAILDF--LPKIEENL----ICSKYTDLLRIA 571
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.060
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 14/41 (34%)
Query: 220 ELIKIRSQAMQLACEIAPGGMASVMYGPDSQLNLAMKRAKE 260
L K+++ +++L Y DS LA+K E
Sbjct: 21 ALKKLQA-SLKL-------------YADDSAPALAIKATME 47
Score = 29.5 bits (65), Expect = 0.70
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 13/38 (34%)
Query: 128 IKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTI 165
+K L + L+ + SA PA + T+
Sbjct: 22 LKKLQASLKLYADDSA-------------PALAIKATM 46
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 30.2 bits (68), Expect = 0.91
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 14/59 (23%)
Query: 208 TFSGVFDYETALELIKIRSQAMQLACEIAP------GGMASVMYGPDSQLNLAMKRAKE 260
TFS E A L+ + + + C+ +P GG+ V P+ L + ++
Sbjct: 696 TFSQK---EMAFNLLGLLTPEVVELCQKSPVMADLNGGLQFV---PE--LKEFTAKLRK 746
Score = 28.3 bits (63), Expect = 3.7
Identities = 7/43 (16%), Positives = 10/43 (23%), Gaps = 9/43 (20%)
Query: 83 PYPKHYDPRQSQAQHSLRPKTDPRDTSIIMFPGQGTQFVGMGG 125
P K Y + A L D ++ G
Sbjct: 794 PELKPYKQVKQIAPAELEGLLDLERVIVV---------TGFAE 827
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural
genomics, PSI-2, protein structure initiative; 1.65A
{Enterococcus faecalis}
Length = 229
Score = 29.1 bits (66), Expect = 1.4
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 113 FPGQGTQFVGMGGDLIKTLP-MAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAA 170
P G F G I+ AK+ +E+A L L + + ++ +K +
Sbjct: 61 DPSGGKDFAKEAGSQIEYDTKKAKEYWEKAKKELGISTLTMDILSSDADSSKKT-VEFV 118
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription
regulation, TETR, DNA-binding transcription; 2.90A
{Pseudomonas aeruginosa}
Length = 210
Score = 27.5 bits (61), Expect = 4.6
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 91 RQSQAQHSLRPKTDPRDTSIIMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILK--FD 148
R++ + L + D SI + + + G+ G L T + D + A + + D
Sbjct: 142 RRAVERGELPARLDVELASIYLQ----SLWDGICGTLAWTERLRDDPWNRAERMFRAGLD 197
Query: 149 LLKLC 153
L+
Sbjct: 198 SLRSS 202
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein,
structural genomics, PSI-biology, protei structure
initiative; 3.10A {Escherichia coli}
Length = 666
Score = 27.6 bits (61), Expect = 5.9
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 237 PGGMASVMYGPDSQLNLAMKRAKEWCVDRGIPEPELSSISGR 278
SV YG + N + + C + G+P P + + SGR
Sbjct: 322 SQSDCSVNYGLNEYANNIIWAIGDACEENGLPHPTVITESGR 363
>3hh0_A Transcriptional regulator, MERR family; protein structure
initiative II(PSI II), NYSGXRC, 11183J, structural
genomics; 2.67A {Bacillus cereus atcc 14579}
Length = 146
Score = 26.2 bits (58), Expect = 7.1
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 197 LGFSLGEITALTFSGVFDYETALELIKIRSQAMQ 230
LGFSLGEI + + E L + + + +
Sbjct: 60 LGFSLGEIQNIILQRDIETEVFLRQMHFQREVLL 93
>1yzy_A Hypothetical protein HI1011; putative tRNA synthase, structural
genomics, PSI, protein structure initiative; 2.10A
{Haemophilus influenzae} SCOP: c.146.1.1
Length = 413
Score = 27.1 bits (59), Expect = 7.6
Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 15/134 (11%)
Query: 136 DLFEEASAILKFDLLKL-----CLEGPASELNKTIHAQAAVFVCSIGALEKLREERP--- 187
+ + E + + D+ + +E + + ++ A V + + L+ +
Sbjct: 264 EKYREKAPHFQLDVEQAIHNENYIEQLYQWVIANLDSEFAPMVYATVPPDALKAIQHQFG 323
Query: 188 -----AAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQLACEIAPGGMAS 242
AIEN A L L + F +++ + ++ + +IAPG
Sbjct: 324 VDQASHAIENTFAKLAAKLKQYGVTNFITAGGETSSIVVQELGFTGFHIGKQIAPG--VP 381
Query: 243 VMYGPDSQLNLAMK 256
+ + + LA+K
Sbjct: 382 WLKAVEEDIFLALK 395
>3dqq_A Putative tRNA synthase; structural genomics, unknown function,
center for structural genomics of infecti diseases;
2.70A {Salmonella typhimurium}
Length = 421
Score = 27.1 bits (59), Expect = 8.5
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 2/74 (2%)
Query: 183 REERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQLACEIAPGGMAS 242
E A+E + L L E F + + + + I+PG
Sbjct: 331 ATEASHAVEALFSLLAARLAEGGITRFIVAGGETSGVVTQSLGITGFHIGPCISPG--VP 388
Query: 243 VMYGPDSQLNLAMK 256
+ + ++LA+K
Sbjct: 389 WVNALHAPVSLALK 402
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural
genomics, the center for structural genomics of I
diseases, csgid; 1.87A {Listeria monocytogenes}
Length = 249
Score = 26.3 bits (58), Expect = 9.8
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 197 LGFSLGEITALTFSGVFDYETALE 220
L F L +I + +FD AL+
Sbjct: 59 LDFPLKKIQQILDDPLFDKNVALD 82
>4edg_A DNA primase; catalytic domain, nucleoside triphosphate, nucleoside
polyph protein-ligand complex, transferase; HET: DNA
ATP; 2.00A {Staphylococcus aureus} PDB: 4edk_A* 4edr_A*
4edt_A* 4edv_A* 4ee1_A*
Length = 329
Score = 26.5 bits (59), Expect = 9.9
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 6/21 (28%)
Query: 188 AAIENCVATLGFSLGEITALT 208
A ++N VAT+G T L+
Sbjct: 170 AGLKNVVATMG------TQLS 184
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.382
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,031,557
Number of extensions: 231040
Number of successful extensions: 557
Number of sequences better than 10.0: 1
Number of HSP's gapped: 508
Number of HSP's successfully gapped: 46
Length of query: 278
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 186
Effective length of database: 4,133,061
Effective search space: 768749346
Effective search space used: 768749346
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.7 bits)