RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11092
         (278 letters)



>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of
           malonyl-CoA ACP transacylase FabD {Escherichia coli
           [TaxId: 562]}
          Length = 235

 Score = 94.1 bits (233), Expect = 1e-23
 Identities = 50/137 (36%), Positives = 74/137 (54%), Gaps = 3/137 (2%)

Query: 112 MFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAAV 171
           +FPGQG+Q VGM  D+  + P+ ++ F EASA L +DL  L  +GPA ELNKT   Q A+
Sbjct: 5   VFPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDLWALTQQGPAEELNKTWQTQPAL 64

Query: 172 FVCSIGALEKLREERPAAIENCVATLGFSLGEITALTFSGVFDYETALELIKIRSQAMQL 231
              S+      +++     +      G SLGE +AL  +GV D+  A+ L+++R + MQ 
Sbjct: 65  LTASVALYRVWQQQG---GKAPAMMAGHSLGEYSALVCAGVIDFADAVRLVEMRGKFMQE 121

Query: 232 ACEIAPGGMASVMYGPD 248
           A    P   A +    D
Sbjct: 122 AVPEVPSHCALMKPAAD 138


>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of
           malonyl-CoA ACP transacylase FabD {Streptomyces
           coelicolor A3(2) [TaxId: 100226]}
          Length = 253

 Score = 86.5 bits (213), Expect = 1e-20
 Identities = 41/135 (30%), Positives = 55/135 (40%), Gaps = 6/135 (4%)

Query: 111 IMFPGQGTQFVGMGGDLIKTLPMAKDLFEEASAILKFDLLKLCLEGPASELNKTIHAQAA 170
           ++ PGQG Q  G   D +   P A D     S  +  DL     +  A E+  T  AQ  
Sbjct: 5   LVAPGQGAQTPGFLTDWLAL-PGAADRVAAWSDAIGLDLAHFGTKADADEIRDTSVAQPL 63

Query: 171 VFVCSIGALEKLREERPAAIENCV-----ATLGFSLGEITALTFSGVFDYETALELIKIR 225
           +    I +   L  +   A          A  G S+GEITA  F+GV D   AL L++ R
Sbjct: 64  LVAAGILSAAALGTQTSVADATGPGFTPGAVAGHSVGEITAAVFAGVLDDTAALSLVRRR 123

Query: 226 SQAMQLACEIAPGGM 240
             AM  A  +   G 
Sbjct: 124 GLAMAEAAAVTVAGA 138


>d1yzya1 c.146.1.1 (A:1-412) Hypothetical protein HI1011
           {Haemophilus influenzae [TaxId: 727]}
          Length = 412

 Score = 28.5 bits (63), Expect = 0.97
 Identities = 16/134 (11%), Positives = 47/134 (35%), Gaps = 15/134 (11%)

Query: 136 DLFEEASAILKFDLLKLCLEGPASE-----LNKTIHAQAAVFVCSIGALEKLRE-ERPAA 189
           + + E +   + D+ +        E     +   + ++ A  V +    + L+  +    
Sbjct: 263 EKYREKAPHFQLDVEQAIHNENYIEQLYQWVIANLDSEFAPMVYATVPPDALKAIQHQFG 322

Query: 190 IENCVATLGFSLGEITALTFSGVFDY------ETALELIK-IRSQAMQLACEIAPGGMAS 242
           ++     +  +  ++ A               ET+  +++ +      +  +IAPG    
Sbjct: 323 VDQASHAIENTFAKLAAKLKQYGVTNFITAGGETSSIVVQELGFTGFHIGKQIAPG--VP 380

Query: 243 VMYGPDSQLNLAMK 256
            +   +  + LA+K
Sbjct: 381 WLKAVEEDIFLALK 394


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0536    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 970,798
Number of extensions: 42611
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 4
Length of query: 278
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 194
Effective length of database: 1,254,276
Effective search space: 243329544
Effective search space used: 243329544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.3 bits)