RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11095
(102 letters)
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 81.7 bits (202), Expect = 8e-21
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 15 DIKVNHPLDYETIKEYNLTIRVENNGAQQLASEATVHIILEDVNDEIPLFTERE-QETVL 73
+ V LD ETI Y L + + + L + +I+ D ND P+F E V+
Sbjct: 59 SVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVM 118
Query: 74 EGEPIGSKVTQVNAIDKD 91
EG P G+ V ++ A D D
Sbjct: 119 EGSPTGTTVMRMTAFDAD 136
Score = 35.4 bits (82), Expect = 0.001
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 16 IKVNHPLDYETIK--EYNLTIRVENNGAQ--QLASEATVHIILED 56
+ LD ET++ +Y L I ++ L AT I+++D
Sbjct: 174 VVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVIDD 218
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 81.3 bits (201), Expect = 1e-20
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 15 DIKVNHPLDYETIKEYNLTIRVENNGAQQLASEATVHIILEDVNDEIPLFTERE-QETVL 73
+ V PLD E I ++L + Q+ + + I + D+ND P F + +V
Sbjct: 59 QLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVP 118
Query: 74 EGEPIGSKVTQVNAIDKD 91
EG G+ V V AID D
Sbjct: 119 EGSKPGTYVMTVTAIDAD 136
Score = 39.7 bits (93), Expect = 3e-05
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 18 VNHPLDYETIKEYNLTIRVENNGAQQ---LASEATVHIILED 56
V LD E +++Y L I+ + L++ AT I + D
Sbjct: 174 VAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 80.5 bits (199), Expect = 2e-20
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 15 DIKVNHPLDYETIKEYNLTIRVENNGAQQLASEATVHIILEDVNDEIPLFTERE-QETVL 73
+KV PLD E I +Y L ++ + + + I + D ND P FT+ + +V
Sbjct: 59 WLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVA 118
Query: 74 EGEPIGSKVTQVNAIDKD-GTFPNN 97
EG G+ V +V+A D D N
Sbjct: 119 EGAVPGTSVMKVSATDADDDVNTYN 143
Score = 44.3 bits (105), Expect = 8e-07
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 18 VNHPLDYETIKEYNLTIRVENNGAQQLASEATVHIILED 56
+ LD E+ Y L ++ + + L++ A I ++D
Sbjct: 175 LTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 80.3 bits (198), Expect = 2e-19
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 15 DIKVNHPLDYETIKEYNLTIRVENNGAQQLASEATVHIILEDVNDEIPLFTERE-QETVL 73
+ V PLD E +Y L+ + + + I + D ND P FT+ + +V
Sbjct: 214 WMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVR 273
Query: 74 EGEPIGSKVTQVNAIDKD 91
EG G++V V+A D+D
Sbjct: 274 EGVQPGTQVMAVSATDED 291
Score = 74.9 bits (184), Expect = 2e-17
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 16 IKVNHPLDYETIKEYNLTIRVEN---NGAQQLASEATVHIILEDVNDEIPLFTEREQE-T 71
+ LD+E K+Y L I VEN S ATV + +EDVN+ P F
Sbjct: 437 LTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVD 495
Query: 72 VLEGEPIGSKVTQVNAIDKDGTFPNNQL 99
V E G K+ + A D D +L
Sbjct: 496 VSEDLSRGEKIISLVAQDPD-KQQIQKL 522
Score = 74.1 bits (182), Expect = 4e-17
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Query: 18 VNHPLDYETIKEYNLTIRVENNGAQQLASEATVHIILEDVNDEIPLFTERE-QETVLEGE 76
+ LD E EY LT++ + L+ E I + D ND P+F + V E E
Sbjct: 330 IGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENE 389
Query: 77 PIGSKVTQVNAIDKDGTFPNNQL 99
G +V +++ D D
Sbjct: 390 I-GFEVQRLSVTDLDMPGTPAWQ 411
Score = 61.0 bits (148), Expect = 1e-12
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 15 DIKVNHPLDYETI----KEYNLTIRVENNGAQQLASEATVHIILEDVNDEIPLFTEREQE 70
+ N LD E+ Y + + V ++G T+ + + DVND P+ + R
Sbjct: 542 IVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFT 601
Query: 71 TVLEGEPIGSKVTQVNAIDKD 91
+ + + D D
Sbjct: 602 MCDQ----NPEPQVLTISDAD 618
Score = 45.3 bits (107), Expect = 5e-07
Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 40 GAQQLASEATVHIILEDVNDEIPLFTERE-QETVLEGE-PIGSKVTQVNAIDKDG 92
L V I DV+ P F+ E +V E G K+ +VN D
Sbjct: 13 LCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTT 67
Score = 36.0 bits (83), Expect = 7e-04
Identities = 4/52 (7%), Positives = 15/52 (28%), Gaps = 2/52 (3%)
Query: 16 IKVNHPLDYETIKEYNLTIRVENNGAQQLASEATVHIILEDVNDEIPLFTER 67
+ P +Y++ + + + V+ + + E+
Sbjct: 648 SMLLSPTQQLKKGDYSIYVLLSDAQ--NNPQLTVVNATVCSCEGKAIKCQEK 697
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 77.4 bits (191), Expect = 3e-19
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 15 DIKVNHPLDYETIKEYNLTIRVEN-NGAQQLASEATVHIILEDVNDEIPLFTERE-QETV 72
DI LD E EY LT + + + L + I + D+ND P+F ++ +V
Sbjct: 54 DIYAFERLDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSV 113
Query: 73 LEGEPIGSKVTQVNAIDKD 91
E +G+ VT+V A D D
Sbjct: 114 PEMSRLGTSVTKVTAEDAD 132
Score = 43.9 bits (104), Expect = 9e-07
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 16 IKVNHPLDYETIKEYNLTIRVE-NNGAQQLASEATVHIILED 56
LD E+ Y + ++ + G +S ATV I L D
Sbjct: 162 FTARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 79.7 bits (197), Expect = 4e-19
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 15 DIKVNHPLDYETIKEYNLTIRVENNGAQQLASEATVHIILEDVNDEIPLFTERE-QETVL 73
+ V PLD E I ++L + Q+ + + I + D+ND P F + +V
Sbjct: 59 QLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVP 118
Query: 74 EGEPIGSKVTQVNAIDKD 91
EG G+ V V AID D
Sbjct: 119 EGSKPGTYVMTVTAIDAD 136
Score = 75.8 bits (187), Expect = 9e-18
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 16 IKVNHPLDYETIKEYNLTIRVENNGAQ------QLASEATVHIILEDVNDEIPLFTEREQ 69
+ V P+D+ET + + LT+ EN S ATV + + DVN+ P F +
Sbjct: 285 VTVVKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNPK 343
Query: 70 E-TVLEGEPIGSKVTQVNAIDKDGTFPNNQL 99
EG G+ +T + A D D + +
Sbjct: 344 IIRQEEGLHAGTMLTTLTAQDPD-RYMQQNI 373
Score = 66.2 bits (162), Expect = 2e-14
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 18 VNHPLDYETIKEYNLTIRVENNGAQQ---LASEATVHIILEDVNDEIPLFTEREQETVLE 74
V LD E +++Y L I+ + L++ AT I + DVND P FT +
Sbjct: 174 VAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVP 233
Query: 75 GEPIGSKVTQVNAIDKD 91
+ V + DKD
Sbjct: 234 ENRVDVIVANLTVTDKD 250
Score = 57.7 bits (140), Expect = 2e-11
Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 7/81 (8%)
Query: 15 DIKVNHPLDYETI----KEYNLTIRVENNGAQQLASEATVHIILEDVNDEIPLFTEREQE 70
I LD E+ YN T +NG ++ T+ I L D+ND P +E
Sbjct: 393 QITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQE-A 451
Query: 71 TVLEGEPIGSKVTQVNAIDKD 91
E + A+D D
Sbjct: 452 ETCETPEPN--SINITALDYD 470
Score = 45.8 bits (109), Expect = 3e-07
Identities = 3/45 (6%), Positives = 16/45 (35%)
Query: 21 PLDYETIKEYNLTIRVENNGAQQLASEATVHIILEDVNDEIPLFT 65
+ + Y + I + ++G ++ + + + + +
Sbjct: 508 KIKFLEAGIYEVPIIITDSGNPPKSNISILRVKVCQCDSNGDCTD 552
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 78.5 bits (194), Expect = 9e-19
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 15 DIKVNHPLDYETIKEYNLTIRVENNGAQQLASEATVHIILEDVNDEIPLFTERE-QETVL 73
+KV PLD E I +Y L ++ + + + I + D ND P FT+ + +V
Sbjct: 59 WLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVA 118
Query: 74 EGEPIGSKVTQVNAIDKD-GTFPNN 97
EG G+ V +V+A D D N
Sbjct: 119 EGAVPGTSVMKVSATDADDDVNTYN 143
Score = 77.0 bits (190), Expect = 3e-18
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 16 IKVNHPLDYETIKEYNLTIRVENNGAQQ---LASEATVHIILEDVNDEIPLFTEREQE-T 71
+K LD+E ++Y L +RVEN + + S ATV + + DVN+ P+F E+
Sbjct: 282 LKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNEA-PIFMPAERRVE 340
Query: 72 VLEGEPIGSKVTQVNAIDKDGTFPNNQL 99
V E +G ++T A + D TF + ++
Sbjct: 341 VPEDFGVGQEITSYTAREPD-TFMDQKI 367
Score = 71.6 bits (176), Expect = 2e-16
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 18 VNHPLDYETIKEYNLTIRVENNGAQQLASEATVHIILEDVNDEIPLFTERE-QETVLEGE 76
+ LD E+ Y L ++ + + L++ A I ++D+ND P+F Q V E E
Sbjct: 175 LTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQVPENE 234
Query: 77 PIGSKVTQVNAIDKD 91
+++ + D D
Sbjct: 235 V-NARIATLKVTDDD 248
Score = 59.3 bits (144), Expect = 6e-12
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 9/82 (10%)
Query: 15 DIKVNHPLDYETIKE-----YNLTIRVENNGAQQLASEATVHIILEDVNDEIPLFTEREQ 69
I +D E + Y I ++G+ T+ ++L DVND P+ R
Sbjct: 387 AIFTRAEMDREDAEHVKNSTYVALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRN- 445
Query: 70 ETVLEGEPIGSKVTQVNAIDKD 91
+ P +T +D D
Sbjct: 446 MQFCQRNPQPHIIT---ILDPD 464
Score = 41.9 bits (99), Expect = 6e-06
Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 16 IKVNHPLDYETIKEYNLTIRVENNGAQQLASEATVHIILEDVNDEIPLFTE 66
+ P I EY + +++ +N T+ + + D + +
Sbjct: 495 SLILQPRKDLEIGEYKIHLKLADNQ--NKDQVTTLDVHVCDCEGTVNNCMK 543
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 76.6 bits (189), Expect = 4e-18
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 15 DIKVNHPLDYETIKEYNLTIRVENNGAQQLASEATVHIILEDVNDEIPLFTERE-QETVL 73
+ V PLD E +Y L+ + + + I + D ND P FT+ + +V
Sbjct: 65 WMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVR 124
Query: 74 EGEPIGSKVTQVNAIDKD 91
EG G++V V+A D+D
Sbjct: 125 EGVQPGTQVMAVSATDED 142
Score = 75.8 bits (187), Expect = 8e-18
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 6/88 (6%)
Query: 16 IKVNHPLDYETIKEYNLTIRVEN---NGAQQLASEATVHIILEDVNDEIPLFTEREQE-T 71
+ LD+E K+Y L I VEN S ATV + +EDVN+ P F
Sbjct: 288 LTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVD 346
Query: 72 VLEGEPIGSKVTQVNAIDKDGTFPNNQL 99
V E G K+ + A D D +L
Sbjct: 347 VSEDLSRGEKIISLVAQDPD-KQQIQKL 373
Score = 73.1 bits (180), Expect = 6e-17
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 18 VNHPLDYETIKEYNLTIRVENNGAQQLASEATVHIILEDVNDEIPLFTERE-QETVLEGE 76
+ LD E EY LT++ + L+ E I + D ND P+F + V E E
Sbjct: 181 IGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPENE 240
Query: 77 PIGSKVTQVNAIDKDGTFPNN 97
G +V +++ D D
Sbjct: 241 I-GFEVQRLSVTDLDMPGTPA 260
Score = 59.6 bits (145), Expect = 4e-12
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 15 DIKVNHPLDYET----IKEYNLTIRVENNGAQQLASEATVHIILEDVNDEIPLFTEREQE 70
+ N LD E+ Y + + V ++G T+ + + DVND P+ + R
Sbjct: 393 IVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFT 452
Query: 71 TVLEGEPIGSKVTQVNAIDKD 91
+ + + D D
Sbjct: 453 MCDQ----NPEPQVLTISDAD 469
Score = 33.8 bits (78), Expect = 0.005
Identities = 2/49 (4%), Positives = 12/49 (24%), Gaps = 2/49 (4%)
Query: 16 IKVNHPLDYETIKEYNLTIRVENNGAQQLASEATVHIILEDVNDEIPLF 64
+ P +Y++ + + + + + +
Sbjct: 499 SMLLSPTQQLKKGDYSIYVLLSDAQNNPQLTVVNATVC--SCEGKAIKC 545
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 73.9 bits (182), Expect = 5e-18
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 15 DIKVNHPLDYETIKEYNLTIRVENNGAQQ-LASEATVHIILEDVNDEIPLFTERE-QETV 72
DI+ LD E Y L + N + + E+ I + D+ND P+FT+ TV
Sbjct: 56 DIQATKRLDREEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATV 115
Query: 73 LEGEPIGSKVTQVNAIDKD 91
E +G+ V QV A D D
Sbjct: 116 PEMADVGTFVVQVTATDAD 134
Score = 41.5 bits (98), Expect = 7e-06
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 18 VNHPLDYETIKEYNLTIRVENNGAQQ--LASEATVHIILED 56
+D E ++Y + I+ ++ G Q L+ TV+I L D
Sbjct: 167 ALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 73.5 bits (181), Expect = 9e-18
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 15 DIKVNHPLDYETIKEYNLTIRVENNGA-QQLASEATVHIILEDVNDEIPLFTERE-QETV 72
+I LD E +Y L + + + L + + ++D+ND P F V
Sbjct: 57 NIHATKTLDREERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANV 116
Query: 73 LEGEPIGSKVTQVNAIDKD 91
E +G+ V QV A D D
Sbjct: 117 PERSNVGTSVIQVTASDAD 135
Score = 47.3 bits (113), Expect = 7e-08
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 15 DIKVNHP-LDYETIKEYNLTIRVENNGAQQ--LASEATVHIILEDVNDEIP 62
I+ P +D E +EY++ I+ ++ G L+ V I L D +
Sbjct: 164 IIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDD 214
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 71.5 bits (176), Expect = 4e-17
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 15 DIKVNHPLDYETIKEYNLTIRVENNGAQQLASEATVHIILEDVNDEIPLFTERE-QETVL 73
+ + PLD ET E+ + V ++ V+I + DVND P F + +
Sbjct: 63 VVWLRQPLDRETKSEFTVEFSVSDHQ---GVITRKVNIQVGDVNDNAPTFHNQPYSVRIP 119
Query: 74 EGEPIGSKVTQVNAIDKD 91
E P+G+ + VNA D D
Sbjct: 120 ENTPVGTPIFIVNATDPD 137
Score = 52.2 bits (126), Expect = 8e-10
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 16 IKVNHPLDYETIKEYNLTIRVENNGA-QQLASEATVHIILEDVND 59
+ V LDYE + Y LT+ + + L++ A + II+ D+ D
Sbjct: 164 VTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQD 208
Score = 34.1 bits (79), Expect = 0.003
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 58 NDEIPLFTEREQET---VLEGEPIGSKVTQVNAIDKDG 92
+ +P FT +T + E P+GS VTQ+ A D D
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDN 39
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 72.8 bits (179), Expect = 6e-17
Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 15 DIKVNHPLDYE------TIKEYNLTIRVENNGAQQLASEATVHIILEDVNDEIPLFTERE 68
++V DYE TI + + + +N + V I+++DVNDE P F R
Sbjct: 51 AVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRP 110
Query: 69 ---QETVLEGEPIGSKVTQVNAIDKD 91
Q V P + V + A D D
Sbjct: 111 LPMQAVVQLNAPPNTPVFTLQARDPD 136
Score = 68.6 bits (168), Expect = 2e-15
Identities = 11/81 (13%), Positives = 26/81 (32%), Gaps = 6/81 (7%)
Query: 16 IKVNHPLDYETIKEYNLTIRVENNGA----QQLASEATVHIILEDVNDEIPLFTEREQE- 70
++ ++ EY L ++ E+ ++ S + + P F E
Sbjct: 163 VRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEA 221
Query: 71 TVLEGEPIGSKVTQVNAIDKD 91
+ E + S + + A
Sbjct: 222 EIPENQKKDSDIISIKAKSFA 242
Score = 44.7 bits (106), Expect = 6e-07
Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 15 DIKVNHPLDYETIKE---YNLTIRVENNGAQQLASEATVHIILEDVND 59
+K+ LD+E +++ Y+L + + ++ + I + DVND
Sbjct: 268 IVKLAKELDFEDLRQPHVYSLIVTATEDSGG-FSTSVDLTIRVTDVND 314
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 72.3 bits (178), Expect = 8e-17
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 15 DIKVNHPLDYETIKEYNLTIRVEN-NGAQQLASEATVHIILEDVNDEIPLFTERE-QETV 72
DI LD E EY LT + + + L + I ++D+ND P F TV
Sbjct: 56 DIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATV 115
Query: 73 LEGEPIGSKVTQVNAIDKD 91
E +G+ VT V A D D
Sbjct: 116 PEMSILGTSVTNVTATDAD 134
Score = 69.2 bits (170), Expect = 1e-15
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 18 VNHPLDYETIKEYNLTIRVENNGAQQ--LASEATVHIILEDVNDEIPLFTERE-QETVLE 74
+D E +EY + I+ ++ G L+ T+ + L DVND P F + +V E
Sbjct: 167 ALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPE 226
Query: 75 GEPIGSKVTQVNAIDKD 91
+G+ + +V A D+D
Sbjct: 227 DVVLGTAIGRVKANDQD 243
Score = 44.6 bits (106), Expect = 7e-07
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 16 IKVNHPLDYETIKEYNLTIRVENNGA-------QQLASEATVHIILE 55
I++ PLD+ET K Y L + N ATV I++E
Sbjct: 276 IRLRKPLDFETKKSYTLKVEAANIHIDPRFSSRGPFKDTATVKIVVE 322
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 68.1 bits (167), Expect = 4e-15
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 16 IKVNHPLDYETIKE------YNLTIRVENNGAQQLASEATVHIILEDVNDEIPLFTERE- 68
++V DYE + + + + +N + V I+++DVNDE P F R
Sbjct: 57 VRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPL 116
Query: 69 --QETVLEGEPIGSKVTQVNAIDKD 91
Q V P + V + A D D
Sbjct: 117 PMQAVVQLNAPPNTPVFTLQARDPD 141
Score = 65.8 bits (161), Expect = 2e-14
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 16 IKVNHPLDYETIKE---YNLTIRVENNGAQQLASEATVHIILEDVNDEIPLFTEREQE-- 70
+K+ LD+E +++ Y+L + + ++ + I + DVND P F + +
Sbjct: 274 VKLAKELDFEDLRQPHVYSLIVTATEDS-GGFSTSVDLTIRVTDVNDNAPKFELPDYQAH 332
Query: 71 TVLEGEPIGSKVTQVNAIDKD 91
V E P+G+ + +V A+D D
Sbjct: 333 NVDEDIPLGTSILRVKAMDSD 353
Score = 60.4 bits (147), Expect = 2e-12
Identities = 10/82 (12%), Positives = 26/82 (31%), Gaps = 6/82 (7%)
Query: 15 DIKVNHPLDYETIKEYNLTIRVENNG----AQQLASEATVHIILEDVNDEIPLFTERE-Q 69
++ ++ EY L ++ E+ ++ S + + P F +
Sbjct: 167 VVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYE 225
Query: 70 ETVLEGEPIGSKVTQVNAIDKD 91
+ E + S + + A
Sbjct: 226 AEIPENQKKDSDIISIKAKSFA 247
Score = 39.2 bits (92), Expect = 6e-05
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 15 DIKVNHPLDYETIKE-YNLTIRVENNGAQQLASEATVHIILED 56
I N LD + Y + ++ G + ATV + ++
Sbjct: 376 IIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRVYTKN 418
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 59.7 bits (145), Expect = 4e-13
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 15 DIKVNHPLDYETIKEYNLTIRVENNGAQQLASEATVHIILEDVNDEIPLFTE 66
++ V LD E + LT + + + I + D+ND P+FT+
Sbjct: 71 ELNVTSILDREETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQ 122
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 55.7 bits (135), Expect = 9e-12
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 15 DIKVNHPLDYETIKEYNLTIRVENNGAQQLASEATVHIILEDVNDEIPLF 64
+ V PLD E I ++L + Q+ + + I + D+ND P F
Sbjct: 61 QLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 53.0 bits (127), Expect = 6e-10
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 16 IKVNHPLDYETIKEYNLTIRV-ENNGAQQLASEATVHIILEDVNDEIPLF 64
+ LD E ++Y L + GA++ + + D +D P F
Sbjct: 195 VSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAPEF 244
Score = 50.7 bits (121), Expect = 4e-09
Identities = 8/102 (7%), Positives = 24/102 (23%), Gaps = 25/102 (24%)
Query: 15 DIKVNHPLDYETIKEYNL--------------TIRVENNGAQQLASEATVHIILEDVNDE 60
+ + LD+ + ++ ++ + + + + N
Sbjct: 66 LLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTS 125
Query: 61 IPLFT-----------EREQETVLEGEPIGSKVTQVNAIDKD 91
P + R + E P G+ +
Sbjct: 126 FPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQF 167
Score = 31.0 bits (70), Expect = 0.044
Identities = 5/29 (17%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 64 FTERE-QETVLEGEPIGSKVTQVNAIDKD 91
F+ E + + G+ + V+A+
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHALRDA 31
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 48.6 bits (117), Expect = 6e-09
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 15 DIKVNHPLDYETIKEYNLTIRVENNGAQQLASEATVHIILEDVNDEIP 62
+ V H +D E + + T+ + G +ATV + ++D ND +P
Sbjct: 72 WLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 39.0 bits (92), Expect = 2e-05
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 56 DVNDEIPLFTEREQE-TVLEGEPIGSKVTQVNAIDKD 91
ND P F + E + E G+ + Q+ A D D
Sbjct: 6 SGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLD 42
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor,
lipoprotein, membrane; 1.81A {Mus musculus}
Length = 100
Score = 46.2 bits (110), Expect = 4e-08
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 15 DIKVNHPLDYETIKEYNLTIRVENNGAQQLASEATVHIILED 56
+ V LD ETI Y L + + + L + +I+ D
Sbjct: 59 SVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLEVIVID 100
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 43.9 bits (104), Expect = 3e-07
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 15 DIKVNHPLDYETIKEYNLTIRVENNGAQQLASEATVHIILED 56
+KV PLD E I Y L ++ + + I + D
Sbjct: 63 WLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTD 104
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 43.9 bits (104), Expect = 3e-07
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 15 DIKVNHPLDYETIKEYNLTIRVENNGAQQLASEATVHIILED 56
++ V LD E I Y L + + + + + I++ D
Sbjct: 58 EVSVTKALDREAIPSYQLQVETTDENGKTIEGPVDLEILVID 99
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 43.2 bits (102), Expect = 5e-07
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 15 DIKVNHPLDYETIKEYNLTIRVENNGAQQLASEATVHIILED 56
D+ V PLD E I Y L + V + + + + I + D
Sbjct: 58 DVSVTRPLDREAIANYELEVEVTDLSGKIIDGPVRLDISVID 99
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 39.3 bits (92), Expect = 2e-05
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 15 DIKVNHPLDYETIKEYNLTIRVENNGA-QQLASEATVHIILED 56
DI LD E +Y L + + + + E+ I ++D
Sbjct: 57 DIHAIQRLDREERSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus}
PDB: 2a4c_A
Length = 98
Score = 38.6 bits (90), Expect = 2e-05
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 15 DIKVNHPLDYETIKEYNLTIRVEN-NGAQQLASEATVHIILED 56
DI LD E EY LT + + + L + I ++D
Sbjct: 56 DIHAIKRLDREEKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 38.2 bits (90), Expect = 4e-05
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 56 DVNDEIPLFTEREQE-TVLEGEPIGSKVTQVNAIDKD 91
ND P+F E + E + E P+G+ V Q++A D D
Sbjct: 6 SGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDAD 42
Score = 37.4 bits (88), Expect = 8e-05
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 15 DIKVNHPLDYETIKEYNLTIRVENNGAQQLASEATVHIILEDVN 58
I V LD E + +T+ + + ATV I + DVN
Sbjct: 73 LITVQRSLDREETAIHKVTVLASDGS--STPARATVTINVTDVN 114
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.006
Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 29/118 (24%)
Query: 1 MNLNFLCYLL----FTWADIKVNHPLDYETIKEYNLTIRVENNGAQQLASEATVHIILED 56
L L Y + + +D N L +I+ + L ++L +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-------LVLLN 252
Query: 57 VNDE-----------IPLFTEREQE--TVLEGEPIGSKVTQVNAIDKDGTFPNNQLLD 101
V + I L T R ++ L + T ++ T +++
Sbjct: 253 VQNAKAWNAFNLSCKI-LLTTRFKQVTDFL----SAATTTHISLDHHSMTLTPDEVKS 305
Score = 31.7 bits (71), Expect = 0.030
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 25/71 (35%)
Query: 3 LNFLCYLLFTWADIKVNHPLDYETIKEYNLTIRVENNGAQQLASEATVHIILEDVNDEIP 62
N C +L T +V L++ T HI L+ +
Sbjct: 262 FNLSCKILLTTRFKQV----------------------TDFLSAATTTHISLDHHSMT-- 297
Query: 63 LFTEREQETVL 73
T E +++L
Sbjct: 298 -LTPDEVKSLL 307
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo
domain, mRNA turnover, RRN processing, RNA binding, DNA
binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Length = 1155
Score = 27.6 bits (60), Expect = 0.66
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 50 VHIILEDVNDEIPLFTEREQETVLEGEPIGSKV 82
+ +I+EDV ++ + E+E + + P GSKV
Sbjct: 875 LQLIVEDVKNKDERYIEKEPLPINKEFPKGSKV 907
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 0.73
Identities = 6/27 (22%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 25 ETIKEYNLTIRV-ENNGAQQLASEATV 50
+ +K+ ++++ ++ A LA +AT+
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATM 46
>3bga_A Beta-galactosidase; NYSGXRC, protein structure initiative II
(PSI-II), glycosyl hydrolase family 2, jelly-roll fold;
2.10A {Bacteroides thetaiotaomicron vpi-5482} PDB:
3dec_A
Length = 1010
Score = 27.1 bits (60), Expect = 1.2
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 6/88 (6%)
Query: 7 CYLLFT----WADIKVNHPLDYETIKEYNLTIRVENNGAQQLASEATVHIILEDVNDEIP 62
YL T AD KV+ LD E KE + V G A+ +++ L+D + +
Sbjct: 218 VYLYSTPKQYIADYKVSASLDKEKYKEGIFNLEVTVEGPS--ATASSIAYTLKDASGKAV 275
Query: 63 LFTEREQETVLEGEPIGSKVTQVNAIDK 90
L ++ I ++ +
Sbjct: 276 LQDAINIKSRGLSNFIAFDEKKIAEVKA 303
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Mus musculus}
Length = 125
Score = 26.1 bits (58), Expect = 1.6
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 50 VHIILEDVNDEIPLFTEREQE 70
I L+DVND P F E E
Sbjct: 101 GEIQLQDVNDHAPEFMEDESG 121
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 26.3 bits (58), Expect = 2.1
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 55 EDVNDEIPLFTEREQETVLEGEPIGS-KVTQV 85
+ + P + Q TVL+ P GS K ++
Sbjct: 8 QQMGRGSPNMLRKRQMTVLDLHP-GSGKTRKI 38
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 26.0 bits (57), Expect = 2.6
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 36 VENNGAQQLASEATVHIILEDVNDEIPLFTEREQE-TVLEGEPI 78
N + + +EA V I+ + F +R +EG+
Sbjct: 196 ARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDA 239
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 25.5 bits (56), Expect = 3.3
Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 6/41 (14%)
Query: 38 NNGAQQLASEATVHIILEDVNDEIPLFTEREQETVLEGEPI 78
N A + +A + + P + + ET E +
Sbjct: 78 TNKAGEDEKQAFLQVF------VQPHIIQLKNETTYENGQV 112
>1vq8_D 50S ribosomal protein L5P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: d.77.1.1 PDB: 1vq4_D*
1vq5_D* 1vq6_D* 1vq7_D* 1s72_D* 1vq9_D* 1vqk_D* 1vql_D*
1vqm_D* 1vqn_D* 1vqo_D* 1vqp_D* 1yhq_D* 1yi2_D* 1yij_D*
1yit_D* 1yj9_D* 1yjn_D* 1yjw_D* 2otj_D* ...
Length = 177
Score = 24.5 bits (54), Expect = 7.1
Identities = 8/10 (80%), Positives = 10/10 (100%)
Query: 74 EGEPIGSKVT 83
EG+PIG+KVT
Sbjct: 66 EGDPIGAKVT 75
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.135 0.388
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,507,563
Number of extensions: 77595
Number of successful extensions: 221
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 85
Length of query: 102
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 35
Effective length of database: 4,831,086
Effective search space: 169088010
Effective search space used: 169088010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.3 bits)