RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11095
         (102 letters)



>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed
           frog (Xenopus laevis) [TaxId: 8355]}
          Length = 113

 Score = 37.0 bits (84), Expect = 6e-05
 Identities = 11/39 (28%), Positives = 17/39 (43%)

Query: 18  VNHPLDYETIKEYNLTIRVENNGAQQLASEATVHIILED 56
           +   LD E   EY LT++  +     L+ E    I + D
Sbjct: 75  IGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITD 113


>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed
           frog (Xenopus laevis) [TaxId: 8355]}
          Length = 107

 Score = 36.1 bits (82), Expect = 1e-04
 Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 4/50 (8%)

Query: 12  TWADIKVNHPLDYETIKE----YNLTIRVENNGAQQLASEATVHIILEDV 57
               +  N  LD E+       Y + + V ++G        T+ + + DV
Sbjct: 58  DNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDV 107


>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed
           frog (Xenopus laevis) [TaxId: 8355]}
          Length = 113

 Score = 34.6 bits (78), Expect = 4e-04
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 12  TWADIKVNHPLDYETIKEYNLTIRVENN---GAQQLASEATVHIILEDV 57
               +     LD+E  K+Y L I VEN          S ATV + +EDV
Sbjct: 65  NQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDV 113



 Score = 28.4 bits (62), Expect = 0.090
 Identities = 9/42 (21%), Positives = 17/42 (40%)

Query: 58 NDEIPLFTEREQETVLEGEPIGSKVTQVNAIDKDGTFPNNQL 99
          ND  P+F  +    ++    IG +V +++  D D        
Sbjct: 2  NDNAPIFDPKTYTALVPENEIGFEVQRLSVTDLDMPGTPAWQ 43


>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 112

 Score = 31.6 bits (70), Expect = 0.005
 Identities = 9/38 (23%), Positives = 18/38 (47%)

Query: 19  NHPLDYETIKEYNLTIRVENNGAQQLASEATVHIILED 56
              LD E+   Y L ++  +   + L++ A   I ++D
Sbjct: 75  TSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 112


>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 114

 Score = 29.7 bits (65), Expect = 0.029
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 3/41 (7%)

Query: 19  NHPLDYETIKEYNLTIRVENNGAQ---QLASEATVHIILED 56
              LD E +++Y L I+  +        L++ AT  I + D
Sbjct: 74  AAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 114



 Score = 27.4 bits (59), Expect = 0.18
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 58 NDEIPLFTEREQE-TVLEGEPIGSKVTQVNAID 89
          ND  P F  +    +V EG   G+ V  V AID
Sbjct: 1  NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAID 33


>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 136

 Score = 28.8 bits (63), Expect = 0.067
 Identities = 4/44 (9%), Positives = 11/44 (25%), Gaps = 1/44 (2%)

Query: 56 DVNDEIPLFTERE-QETVLEGEPIGSKVTQVNAIDKDGTFPNNQ 98
          ++      F E      + +    G  +  V   + +       
Sbjct: 5  EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQY 48



 Score = 28.0 bits (61), Expect = 0.12
 Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 2/60 (3%)

Query: 14  ADIKVNHPLDYETIKEYNLTIRVENNGAQQLASEATVHIILEDVNDEIPLFTEREQETVL 73
             +           +     I  ++   Q+      V++  E    E P+    E E ++
Sbjct: 62  GTVYAVRSFPLTAEQ-AKFLIYAQDKETQEKWQV-AVNLSREPTLTEEPMKEPHEIEEIV 119


>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed
           frog (Xenopus laevis) [TaxId: 8355]}
          Length = 107

 Score = 28.1 bits (61), Expect = 0.091
 Identities = 4/52 (7%), Positives = 15/52 (28%), Gaps = 2/52 (3%)

Query: 11  FTWADIKVNHPLDYETIKEYNLTIRVENNGAQQLASEATVHIILEDVNDEIP 62
            +     +  P       +Y++ + + +   Q       V+  +     +  
Sbjct: 55  DSKGTSMLLSPTQQLKKGDYSIYVLLSDA--QNNPQLTVVNATVCSCEGKAI 104


>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 102

 Score = 27.5 bits (60), Expect = 0.14
 Identities = 10/41 (24%), Positives = 18/41 (43%)

Query: 16  IKVNHPLDYETIKEYNLTIRVENNGAQQLASEATVHIILED 56
           + V  PLD E I  ++L     +    Q+ +   + I + D
Sbjct: 62  LSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVID 102


>d2guma1 e.76.1.1 (A:111-725) Glycoprotein B {Human herpesvirus 1
           [TaxId: 10298]}
          Length = 615

 Score = 24.0 bits (52), Expect = 5.0
 Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 2   NLNFLCYLLFTWADIKVNHPLDYETI-KEYNL 32
           +  F+   ++T  +IK +  LDY  + +   L
Sbjct: 570 DHEFVPLEVYTRHEIKDSGLLDYTEVQRRNQL 601


>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId:
           562]}
          Length = 152

 Score = 23.4 bits (49), Expect = 6.9
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 13  WADIKVNHPLDYETIKEYNLTIRVENNGAQQLASEATVHIILEDV 57
                  H + +E +K +      EN  A +LA  A ++  LED 
Sbjct: 105 LDAALGQHQIKWEWVKGH--AGHPENERADELARAAAMNPTLEDT 147


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 367,197
Number of extensions: 14498
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 14
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.0 bits)