BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11096
(554 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FVF|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVF|B Chain B, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
pdb|1FVH|A Chain A, Crystal Structure Analysis Of Neuronal Sec1 From The Squid
L. Pealei
Length = 591
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 126/588 (21%), Positives = 235/588 (39%), Gaps = 87/588 (14%)
Query: 23 KILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIALLRPTKENI 82
K+L++D+ + +VS EI+ + + E I E + L+ + L+ PT+E++
Sbjct: 26 KVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRRR----EPLPLLEAVYLITPTEESV 81
Query: 83 ALLCKELKNPKFGSY---YIYFTNIIPKADIKTLAEYDEQESVREIEELYADYLPILPHF 139
L + +NP Y +I+FT P+ K L + ++ ++E+ +LP
Sbjct: 82 KCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCKSTTARFIKTLKEINIAFLPYESQI 141
Query: 140 FSLNIPLCSNGHFWDPVHLV-------RSSQGLIALLLSLNKNPVIRYQASSEMTKRLAX 192
FSL+ P +++P R ++ + L +L + P +RY++ + A
Sbjct: 142 FSLDSPDTFQV-YYNPSRAQGGIPNKERCAEQIATLCATLGEYPSVRYRSDFDENASFAQ 200
Query: 193 XXXXX----XXXXXXLFDMRQGDAVPVLLIIDRTCDPITPLLSQWTYQAMLHELLTINNN 248
+ + Q D LLI+DR DPI+PLL + T+QAM ++LL I N+
Sbjct: 201 LVQQKLDAYRADDPTMGEGPQKDRS-QLLILDRGFDPISPLLHELTFQAMAYDLLPIEND 259
Query: 249 RVDLSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKLLMDDF--NKR---AKR 303
+ G K+V++ E DD + + + Q + + F KR A
Sbjct: 260 VYKYVNTGGNEVPEKEVLLD-EKDDLWVEMRHQHIAVVSQNVTKKLKQFADEKRMGTAAD 318
Query: 304 HEGVCDF----------------YSSNLFMNYGEIGQTIKLLMDDFNKRAKSQQKVESIQ 347
G+ D YS++L + +K +K K +Q +
Sbjct: 319 KAGIKDLSQMLKKMPQYQKELSKYSTHLHL----AEDCMKQYQQHVDKLCKVEQDLAMGT 374
Query: 348 DMKAFVENYPQFKMKKLLTSGKIRDVEAVRLVMLYAIRYEHHSNNDLSGLMDILRRIGVS 407
D + +L KI + +R+++LY I S +L+ L+ I
Sbjct: 375 DADGEKIRDHMRNIVPILLDQKISAYDKIRIILLYIIHKGGISEENLAKLVQ-HAHIPAE 433
Query: 408 ESLVQMPLQVL------DYSNEHSKYTHHNDSFSATQDVMVKKTQRFLKDLKGVENVYTQ 461
E + +Q L D +H + Q + R+
Sbjct: 434 EKWIINDMQNLGVPIIQDGGRRKIPQPYHTHNRKERQADHTYQMSRWT------------ 481
Query: 462 HEPVLKDILDDLVKGKLKDTHFPYLDPYQGRSEGSR--------WYQD-----------I 502
P +KDI++ V+ KL H+P+L+ R + W++D +
Sbjct: 482 --PYMKDIMEAAVEDKLDTRHYPFLNGGGPRPSCQQPVSVRYGHWHKDKGQASYKSGPRL 539
Query: 503 IVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQVR 550
I+F+VGG +Y E +++ ++ NN ++LG+T + ++ +R
Sbjct: 540 IIFVVGGISYSEMRSAYEVTQTAKNNWE-VILGSTHILTPEGLLRDLR 586
>pdb|2XHE|A Chain A, Crystal Structure Of The Unc18-Syntaxin 1 Complex From
Monosiga Brevicollis
Length = 650
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/336 (25%), Positives = 154/336 (45%), Gaps = 26/336 (7%)
Query: 19 GPGMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIALLRPT 78
G K+L++DK ++S SEIL V + E + + + + + PT
Sbjct: 22 GGDWKVLVVDKPALRMISECARMSEILDLGVTVVEDVSKQRKV----LPQFHGVYFIEPT 77
Query: 79 KENIALLCKEL--KNPKFGSYYIYFTNIIPKADIKTLAEYDEQESVREIEELYADYLPIL 136
+EN+ + ++ + P + + +++F + +P A + LA + V+ ++E+ ++P
Sbjct: 78 EENLDYVIRDFADRTPTYEAAHLFFLSPVPDALMAKLASAKAVKYVKTLKEINTLFIPKE 137
Query: 137 PHFFSLNIP------LCSNGHFWDPVHLVRSSQGLIALLLSLNKNPVIRYQASSE-MTKR 189
F+LN P S ++ HLVR L L ++N P++RY ++S T+R
Sbjct: 138 HRVFTLNEPHGLVQYYGSRSSSYNIDHLVRR---LSTLCTTMNVAPIVRYSSTSTPGTER 194
Query: 190 LAXXXXXX--XXXXXXLFDMRQGDAVPVLLIIDRTCDPITPLLSQWTYQAMLHELLTINN 247
+A L + R+G LI+DR D +PL+ + TYQA ++LL I N
Sbjct: 195 MAMQLQKEIDMSVSQGLINAREGKLKSQFLILDRAVDLKSPLVHELTYQAAAYDLLNIEN 254
Query: 248 NRVDLSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKRHEGV 307
+ S V + ++ VV E DD + ++ E+ + +K D+F A+R +G+
Sbjct: 255 DIYSYSTVDAGGREQQRQVVLGEDDDIWLQMRHLHISEVFRKVKSSFDEFCVSARRLQGL 314
Query: 308 CDFYSSNLFMNYGEIGQ-TIKLLMDDFNKRAKSQQK 342
D GE G +K ++ D + + QK
Sbjct: 315 RD-------SQQGEGGAGALKQMLKDLPQHREQMQK 343
>pdb|2PJX|A Chain A, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
Complex
pdb|2PJX|B Chain B, Crystal Structure Of The Munc18cSYNTAXIN4 N-Peptide
Complex
pdb|3PUK|A Chain A, Re-Refinement Of The Crystal Structure Of Munc18-3 And
Syntaxin4 N- Peptide Complex
pdb|3PUK|B Chain B, Re-Refinement Of The Crystal Structure Of Munc18-3 And
Syntaxin4 N- Peptide Complex
Length = 592
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 125/603 (20%), Positives = 261/603 (43%), Gaps = 93/603 (15%)
Query: 3 VVRAIKQYVIKMTEQSGPGMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCD 62
V R IK V + G KI+LLD+ TT ++S +++L+ + + E I +
Sbjct: 14 VWRKIKTAVFDDCRKEG-EWKIMLLDEFTTKLLSSCCKMTDLLEEGITVIENIYK----N 68
Query: 63 YENMKHLKCIALLRPTKENIALLCKELKNP---KFGSYYIYFTNIIPKADIKTLAEYDEQ 119
E ++ +K + + PT +++ ++ + K+ + YIYFT+ P + + +
Sbjct: 69 REPVRQMKALYFISPTPKSVDCFLRDFGSKSEKKYKAAYIYFTDFCPDSLFNKI-KASCS 127
Query: 120 ESVREIEELYADYLPILPHFFSLNIPLCSNGHFW----DPVHLVRS-------SQGLIAL 168
+S+R +E+ ++P ++L++P + ++ DP + R ++ ++ +
Sbjct: 128 KSIRRCKEINISFIPQESQVYTLDVP---DAFYYCYSPDPSNASRKEVVMEAMAEQIVTV 184
Query: 169 LLSLNKNPVIRYQASS-EMTKRLAXXXXXXXXXXXXLFD--MRQGDAVPVLLIIDRTCDP 225
+L++NP +RY++ + +LA + + + +G LLIIDR DP
Sbjct: 185 CATLDENPGVRYKSKPLDNASKLAQLVEKKLEDYYKIDEKGLIKGKTQSQLLIIDRGFDP 244
Query: 226 ITPLLSQWTYQAMLHELLTINNNRVDLSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGE 285
++ +L + T+QAM ++LL I N+ ++ K+ V+ E DD + +
Sbjct: 245 VSTVLHELTFQAMAYDLLPIEND----TYKYKTDGKEKEAVLE-EDDDLWVRVRHRHIAV 299
Query: 286 IGQTIKLLMDDFNKRAKRHEGVCDFYSSNLFMN-----YGEIGQTI---KLLMDDFNKRA 337
+ + I LM + + K EG + M +I + + L D NK
Sbjct: 300 VLEEIPKLMKEISSTKKATEGKTSLSALTQLMKKMPHFRKQISKQVVHLNLAEDCMNKFK 359
Query: 338 KSQQKV-ESIQDMKAFVENYPQFKMKKLLTSGKIRDVEAVRLVMLYAIRYEHHSNND--L 394
+ +K+ ++ QD+ L T + + V+ LV+L + ++H N D
Sbjct: 360 LNIEKLCKTEQDL-------------ALGTDAEGQRVKDSMLVLLPVLLNKNHDNCDKIR 406
Query: 395 SGLMDILRRIGVSESLVQM---PLQVLDYSNEHSKYTHHNDSFSATQDVMVKKTQRFLKD 451
+ L+ I G +E + +++ D S+ ++H V + + L+
Sbjct: 407 AVLLYIFGINGTTEENLDRLIHNVKIEDDSDMIRNWSHLGVPI-----VPPSQQAKPLRK 461
Query: 452 LKGVENVY--TQHEPVLKDILDDLVKGKLKDTHFPYLDP----YQG-------------- 491
+ E + ++ P +KDI++D + +L +PY + G
Sbjct: 462 DRSAEETFQLSRWTPFIKDIMEDAIDNRLDSKEWPYCSRCPAVWNGSGAVSARQKPRTNY 521
Query: 492 ----RSEGSRWYQDIIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQ 547
R GSR +I+F++GG TY E C +++ S + + +++G+T + +
Sbjct: 522 LELDRKNGSR----LIIFVIGGITYSEMRCAYEV--SQAHKSCEVIIGSTHILTPRKLLD 575
Query: 548 QVR 550
++
Sbjct: 576 DIK 578
>pdb|3PUJ|A Chain A, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
Complex
pdb|3PUJ|B Chain B, Crystal Structure Of The Munc18-1 And Syntaxin4 N-Peptide
Complex
Length = 594
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 115/577 (19%), Positives = 241/577 (41%), Gaps = 93/577 (16%)
Query: 23 KILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIALLRPTKENI 82
K+L++D+ + ++S ++I+ + + E I E + L+ + L+ P+++++
Sbjct: 29 KVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRR----EPLPSLEAVYLITPSEKSV 84
Query: 83 ALLCKELKNP---KFGSYYIYFTNIIPKADIKTLAEYDEQESVREIEELYADYLPILPHF 139
L + K+P K+ + +++FT+ P A L + + ++ + E+ +LP
Sbjct: 85 HSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVKSRAAKVIKTLTEINIAFLPYESQV 144
Query: 140 FSLNIPLCSNGHFWDPVH-------LVRSSQGLIALLLSLNKNPVIRYQASSEMTKRLAX 192
+SL+ S F+ P L R ++ + L +L + P +RY+ + LA
Sbjct: 145 YSLD-SADSFQSFYSPHKAQMKNPILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQ 203
Query: 193 XXXXXXXXXXXLFDMRQGD----AVPVLLIIDRTCDPITPLLSQWTYQAMLHELLTINNN 248
D G+ A LLI+DR DP +P+L + T+QAM ++LL I N+
Sbjct: 204 LIQDKLDAYKA-DDPTMGEGPDKARSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIEND 262
Query: 249 RVDLSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKLLMDDFN---------- 298
V SGI + V+ E DD + + + E+ Q + + DF+
Sbjct: 263 -VYKYETSGIGEARVKEVLLDEDDDLWIALRHKHIAEVSQEVTRSLKDFSSSKRMNTGEK 321
Query: 299 ----------KRAKRHEGVCDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKSQQKVESIQD 348
K+ +++ YS++L + +K +K + +Q + D
Sbjct: 322 TTMRDLSQMLKKMPQYQKELSKYSTHLHL----AEDCMKHYQGTVDKLCRVEQDLAMGTD 377
Query: 349 MKAFVENYPQFKMKKLLTSGKIRDVEAVRLVMLYAIRYEHHSNNDLSGLMDILRRIGVSE 408
+ P + +L + + +R+++LY I + G++E
Sbjct: 378 AEGEKIKDPMRAIVPILLDANVSTYDKIRIILLY-----------------IFLKNGITE 420
Query: 409 SLVQMPLQVLDYSNEHSKYTHHNDSFSA--TQDVMVKKTQRFLKDLKGVENVY--TQHEP 464
+ +Q E S+ + D +++ + + + E Y ++ P
Sbjct: 421 ENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDSTLRRRSKPERKERISEQTYQLSRWTP 480
Query: 465 VLKDILDDLVKGKLKDTHFPYLDPYQGRSEGS-----------RWYQD-----------I 502
++KDI++D ++ KL H+PY+ RS S W+++ +
Sbjct: 481 IIKDIMEDTIEDKLDTKHYPYI---STRSSASFSTTAVSARYGHWHKNKAPGEYRSGPRL 537
Query: 503 IVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTV 539
I+F++GG + E C +++ ++G +L+G+T +
Sbjct: 538 IIFILGGVSLNEMRCAYEVTQANGK--WEVLIGSTHI 572
>pdb|1EPU|A Chain A, X-Ray Crystal Structure Of Neuronal Sec1 From Squid
Length = 591
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 125/588 (21%), Positives = 227/588 (38%), Gaps = 87/588 (14%)
Query: 23 KILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIALLRPTKENI 82
K+L++D+ + VS EI + + E I E + L+ + L+ PT+E++
Sbjct: 26 KVLIVDQLSXRXVSACCKXHEIXSEGITLVEDINRRR----EPLPLLEAVYLITPTEESV 81
Query: 83 ALLCKELKNPKFGSY---YIYFTNIIPKADIKTLAEYDEQESVREIEELYADYLPILPHF 139
L + +NP Y +I+FT P+ K L + ++ ++E+ +LP
Sbjct: 82 KCLXADFQNPDNPQYRGAHIFFTEACPEELFKELCKSTTARFIKTLKEINIAFLPYESQI 141
Query: 140 FSLNIPLCSNGHFWDPVHLV-------RSSQGLIALLLSLNKNPVIRYQASSEMTKRLAX 192
FSL+ P +++P R ++ + L +L + P +RY++ + A
Sbjct: 142 FSLDSPDTFQV-YYNPSRAQGGIPNKERCAEQIATLCATLGEYPSVRYRSDFDENASFAQ 200
Query: 193 XXXXXXXXXXXLFDMRQGDAV----PVLLIIDRTCDPITPLLSQWTYQAMLHELLTINNN 248
D G+ LLI+DR DPI+PLL + T+QA ++LL I N+
Sbjct: 201 LVQQKLDAYRA-DDPTXGEGPQKDRSQLLILDRGFDPISPLLHELTFQAXAYDLLPIEND 259
Query: 249 RVDLSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKLLMDDF--NKR---AKR 303
+ G K+V++ E DD + + + Q + + F KR A
Sbjct: 260 VYKYVNTGGNEVPEKEVLLD-EKDDLWVEXRHQHIAVVSQNVTKKLKQFADEKRXGTAAD 318
Query: 304 HEGVCDF----------------YSSNLFMNYGEIGQTIKLLMDDFNKRAKSQQKVESIQ 347
G+ D YS++L + K +K K +Q +
Sbjct: 319 KAGIKDLSQXLKKXPQYQKELSKYSTHLHL----AEDCXKQYQQHVDKLCKVEQDLAXGT 374
Query: 348 DMKAFVENYPQFKMKKLLTSGKIRDVEAVRLVMLYAIRYEHHSNNDLSGLMDILRRIGVS 407
D + +L KI + +R+++LY I S +L+ L+ I
Sbjct: 375 DADGEKIRDHXRNIVPILLDQKISAYDKIRIILLYIIHKGGISEENLAKLVQHA-HIPAE 433
Query: 408 ESLVQMPLQVL------DYSNEHSKYTHHNDSFSATQDVMVKKTQRFLKDLKGVENVYTQ 461
E + Q L D +H + Q + R+
Sbjct: 434 EKWIINDXQNLGVPIIQDGGRRKIPQPYHTHNRKERQADHTYQXSRWT------------ 481
Query: 462 HEPVLKDILDDLVKGKLKDTHFPYLDPYQGRSEGSR--------WYQD-----------I 502
P KDI + V+ KL H+P+L+ R + W++D +
Sbjct: 482 --PYXKDIXEAAVEDKLDTRHYPFLNGGGPRPSCQQPVSVRYGHWHKDKGQASYKSGPRL 539
Query: 503 IVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQVR 550
I+F+VGG +Y E +++ ++ NN ++LG+T + ++ +R
Sbjct: 540 IIFVVGGISYSEXRSAYEVTQTAKNNWE-VILGSTHILTPEGLLRDLR 586
>pdb|3C98|A Chain A, Revised Structure Of The Munc18a-Syntaxin1 Complex
Length = 606
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 115/577 (19%), Positives = 241/577 (41%), Gaps = 93/577 (16%)
Query: 23 KILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIALLRPTKENI 82
K+L++D+ + ++S ++I+ + + E I E + L+ + L+ P+++++
Sbjct: 41 KVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRR----EPLPSLEAVYLITPSEKSV 96
Query: 83 ALLCKELKNP---KFGSYYIYFTNIIPKADIKTLAEYDEQESVREIEELYADYLPILPHF 139
L + K+P K+ + +++FT+ P A L + + ++ + E+ +LP
Sbjct: 97 HSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVKSRAAKVIKTLTEINIAFLPYESQV 156
Query: 140 FSLNIPLCSNGHFWDPVH-------LVRSSQGLIALLLSLNKNPVIRYQASSEMTKRLAX 192
+SL+ S F+ P L R ++ + L +L + P +RY+ + LA
Sbjct: 157 YSLD-SADSFQSFYSPHKAQMKNPILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQ 215
Query: 193 XXXXXXXXXXXLFDMRQGD----AVPVLLIIDRTCDPITPLLSQWTYQAMLHELLTINNN 248
D G+ A LLI+DR DP +P+L + T+QAM ++LL I N+
Sbjct: 216 LIQDKLDAYKA-DDPTMGEGPDKARSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIEND 274
Query: 249 RVDLSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKLLMDDFN---------- 298
V SGI + V+ E DD + + + E+ Q + + DF+
Sbjct: 275 -VYKYETSGIGEARVKEVLLDEDDDLWIALRHKHIAEVSQEVTRSLKDFSSSKRMNTGEK 333
Query: 299 ----------KRAKRHEGVCDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKSQQKVESIQD 348
K+ +++ YS++L + +K +K + +Q + D
Sbjct: 334 TTMRDLSQMLKKMPQYQKELSKYSTHLHL----AEDCMKHYQGTVDKLCRVEQDLAMGTD 389
Query: 349 MKAFVENYPQFKMKKLLTSGKIRDVEAVRLVMLYAIRYEHHSNNDLSGLMDILRRIGVSE 408
+ P + +L + + +R+++LY I + G++E
Sbjct: 390 AEGEKIKDPMRAIVPILLDANVSTYDKIRIILLY-----------------IFLKNGITE 432
Query: 409 SLVQMPLQVLDYSNEHSKYTHHNDSFSA--TQDVMVKKTQRFLKDLKGVENVY--TQHEP 464
+ +Q E S+ + D +++ + + + E Y ++ P
Sbjct: 433 ENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDSTLRRRSKPERKERISEQTYQLSRWTP 492
Query: 465 VLKDILDDLVKGKLKDTHFPYLDPYQGRSEGS-----------RWYQD-----------I 502
++KDI++D ++ KL H+PY+ RS S W+++ +
Sbjct: 493 IIKDIMEDTIEDKLDTKHYPYI---STRSSASFSTTAVSARYGHWHKNKAPGEYRSGPRL 549
Query: 503 IVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTV 539
I+F++GG + E C +++ ++G +L+G+T +
Sbjct: 550 IIFILGGVSLNEMRCAYEVTQANGK--WEVLIGSTHI 584
>pdb|1MQS|A Chain A, Crystal Structure Of Sly1p In Complex With An N-Terminal
Peptide Of Sed5p
Length = 671
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/319 (21%), Positives = 140/319 (43%), Gaps = 39/319 (12%)
Query: 23 KILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIALLRPTKENI 82
K+L+LD ++T+ +S V +++L+ + + I + D + + I + PTKENI
Sbjct: 59 KVLILDIKSTATISSVLRVNDLLKAGITVHSLI----KQDRSPLPDVPAIYFVSPTKENI 114
Query: 83 ALLCKELKNPKFGSYYIYFTNIIPKADIKTLAE----YDEQESVREIEELYADYLPILPH 138
++ +LK+ K+ +YI FT+ +P+ ++ LA+ + + ++++ + Y D++ P
Sbjct: 115 DIIVNDLKSDKYSEFYINFTSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYLDFIVTEPE 174
Query: 139 FFSLNIPLCSNGHFW--DPVHLVRSSQGLIA--------LLLSLNKNPVIRYQA------ 182
FSL I SN + DP GL A +L++N P+IR
Sbjct: 175 LFSLEI---SNAYLTLNDPKTTEEEITGLCANIADGLFNTVLTINSIPIIRAAKGGPAEI 231
Query: 183 -SSEMTKRLAXXXXXXXXXXXXLFDMRQGDAVPVLLIIDRTCDPITPLLSQWTYQAMLHE 241
+ ++ +L VL+I+DR D + W YQ + +
Sbjct: 232 IAEKLGTKLRDFVINTNSSSTSTLQGNDSLERGVLIILDRNIDFASXFSHSWIYQCXVFD 291
Query: 242 LLTINNNRVDL---SHVSGISPDLKQVVVSYEHDD-----FYSSNLFMNYGEIGQTIKLL 293
+ ++ N V + S +G + + + ++D F+ N + + E + ++
Sbjct: 292 IFKLSRNTVTIPLESKENGTDNTTAKPLATKKYDIEPNDFFWXENSHLPFPEAAENVEAA 351
Query: 294 MDDFNKRAK---RHEGVCD 309
++ + + A R GV +
Sbjct: 352 LNTYKEEAAEITRKTGVTN 370
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 485 YLDPYQGRSEGSR-----WYQDIIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTV 539
Y+DP R +R Y +VF+VGG Y E + + S +N + + G+T +
Sbjct: 589 YIDPKITRGSHTRKPKRQSYNKSLVFVVGGGNYLEYQNLQEWAHSQLHNPKKVXYGSTAI 648
Query: 540 HNSTSFMQQV 549
F+ ++
Sbjct: 649 TTPAEFLNEI 658
>pdb|1Y9J|A Chain A, Solution Structure Of The Rat Sly1 N-Terminal Domain
Length = 159
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 20 PGMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIALLRPTK 79
P K+L+ D+ I+S + + E+ M + + D + ++ + + + PT+
Sbjct: 48 PVWKVLIYDRFGQDIISPLLSVKELRD----MGITLHLLLHSDRDPIRDVPAVYFVMPTE 103
Query: 80 ENIALLCKELKNPKFGSYYIYFTNIIPKADIKTL 113
ENI LC++L+N + SYY+ F + I ++ ++ +
Sbjct: 104 ENIDRLCQDLRNQLYESYYLNFISAISRSKLEDI 137
>pdb|1QS1|A Chain A, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|B Chain B, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|C Chain C, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
pdb|1QS1|D Chain D, Crystal Structure Of Vegetative Insecticidal Protein2
(Vip2)
Length = 462
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 32 TSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIALLRPTKEN 81
T ++S VF+ S +L EV E++ I++Q Y N+++LK + KE+
Sbjct: 21 TVLLSTVFSIS-LLNNEVIKAEQLNINSQSKYTNLQNLKITDKVEDFKED 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,652,587
Number of Sequences: 62578
Number of extensions: 640343
Number of successful extensions: 1674
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1634
Number of HSP's gapped (non-prelim): 20
length of query: 554
length of database: 14,973,337
effective HSP length: 104
effective length of query: 450
effective length of database: 8,465,225
effective search space: 3809351250
effective search space used: 3809351250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)