Query psy11096
Match_columns 554
No_of_seqs 174 out of 1005
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 17:51:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11096.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11096hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1299|consensus 100.0 7.7E-96 2E-100 725.9 42.9 526 1-552 1-548 (549)
2 KOG1300|consensus 100.0 2.8E-84 6.1E-89 666.0 44.4 521 1-551 1-583 (593)
3 PF00995 Sec1: Sec1 family; I 100.0 2.6E-84 5.6E-89 715.5 38.8 507 22-549 1-564 (564)
4 KOG1301|consensus 100.0 8.8E-82 1.9E-86 633.1 41.2 543 2-553 11-615 (621)
5 COG5158 SEC1 Proteins involved 100.0 4.3E-79 9.4E-84 641.1 43.5 531 1-553 2-578 (582)
6 KOG1302|consensus 100.0 1.4E-74 3E-79 596.5 40.0 521 3-549 17-599 (600)
7 PRK10039 hypothetical protein; 48.4 36 0.00077 29.6 4.7 44 507-550 80-125 (127)
8 PF12327 FtsZ_C: FtsZ family, 39.2 56 0.0012 26.9 4.5 39 498-537 35-76 (95)
9 PRK08883 ribulose-phosphate 3- 38.9 34 0.00074 33.0 3.6 40 501-547 167-206 (220)
10 PRK05581 ribulose-phosphate 3- 36.1 43 0.00093 31.9 3.9 42 502-550 171-212 (220)
11 TIGR01163 rpe ribulose-phospha 33.9 48 0.001 31.2 3.8 44 502-552 166-209 (210)
12 PLN02334 ribulose-phosphate 3- 27.0 65 0.0014 31.1 3.5 40 503-549 176-215 (229)
13 cd00564 TMP_TenI Thiamine mono 26.4 67 0.0015 29.5 3.4 43 502-551 151-193 (196)
14 cd04726 KGPDC_HPS 3-Keto-L-gul 24.0 1E+02 0.0022 28.7 4.2 44 501-551 158-201 (202)
15 PRK00043 thiE thiamine-phospha 23.1 81 0.0018 29.7 3.3 37 502-545 161-197 (212)
16 TIGR00693 thiE thiamine-phosph 21.1 1.2E+02 0.0025 28.3 3.9 42 502-550 153-194 (196)
17 cd00429 RPE Ribulose-5-phospha 20.9 1.1E+02 0.0024 28.7 3.7 44 502-552 167-210 (211)
No 1
>KOG1299|consensus
Probab=100.00 E-value=7.7e-96 Score=725.93 Aligned_cols=526 Identities=49% Similarity=0.829 Sum_probs=475.5
Q ss_pred CcHHHHHHHHHHHhhccCCCceEEEEEcCCCchhhhcccChhHHhhcCeEEEeecccccccccCCCCCCcEEEEEcCCHH
Q psy11096 1 MNVVRAIKQYVIKMTEQSGPGMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIALLRPTKE 80 (554)
Q Consensus 1 m~l~~~~~~~i~~~l~~~~~~~KvLv~D~~~~~ils~~~~~~~L~~~gV~~v~~l~~~~~~~r~~~~~~~~iy~i~pt~~ 80 (554)
|||....|.||.+|+..+++|.|||++|+.|..++|++++.|+++++.|++++.|+++ .|+.+.+..||+|++||++
T Consensus 1 Mnlv~~~k~yi~~m~~~~g~~mKvLLlD~eTt~ivS~~~tQSelLq~evyLferI~n~---~rE~~khLkcvvfiRPT~e 77 (549)
T KOG1299|consen 1 MNLVSSSKKYIEKMIQESGPGMKVLLLDKETTPIVSMCITQSELLQKEVYLFERIDNK---SRERIKHLKCVVFIRPTPE 77 (549)
T ss_pred CchHHHHHHHHHHHHHhcCCCceEEEEcCCCceehhhhcchHHHhhhheehhhhhcch---hhHHhhCceEEEEeccChH
Confidence 9999999999999999888899999999999999999999999999999999999996 5899999999999999999
Q ss_pred HHHHHHHHhcCCCCceEEEEecCCCChhhHHHHhccCccccccceeEeeceEEeccCCeEEecCCCCCCC-CCCChHHHH
Q psy11096 81 NIALLCKELKNPKFGSYYIYFTNIIPKADIKTLAEYDEQESVREIEELYADYLPILPHFFSLNIPLCSNG-HFWDPVHLV 159 (554)
Q Consensus 81 ~i~~i~~d~~~~~y~~~~i~f~~~~~~~~~~~l~~~~~~~~i~~i~e~~ldf~pld~~lfsl~~p~~f~~-~~~~~~~l~ 159 (554)
|++++++++++|+|..|||+|++.++...++.||+++....|..|+|+++||+++++++|||+.|++|.. +.|++..++
T Consensus 78 niq~L~~ELrnPry~~Y~lyFsN~i~ks~le~LAesD~~E~V~eVqE~y~Df~~~n~~Lfsln~p~~~~~~~~w~~~~l~ 157 (549)
T KOG1299|consen 78 NIQLLIEELRNPRYGEYHLYFSNIISKSDLERLAESDEQEVVREVQEIYLDFFKVNPDLFSLNIPHIFESSLNWDPGALT 157 (549)
T ss_pred HHHHHHHHhcCCcceeEEEEEeccCCHHHHHHHHhcchHHHHHHHHHHHHhhhccCCceeecCCchhhccccccChhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999976 779999999
Q ss_pred HHHHHHHHHHHHhCCCCeEEecCCcHHHHHHHHHHHHHHHhhhcccCCCCCCCCcEEEEeeCCCCCcccccchhhHHHHH
Q psy11096 160 RSSQGLIALLLSLNKNPVIRYQASSEMTKRLAEKVKETIIKEEKLFDMRQGDAVPVLLIIDRTCDPITPLLSQWTYQAML 239 (554)
Q Consensus 160 ~ia~~L~~l~~~~g~~P~I~~~~~~~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~LiIlDR~~Dl~TpLl~~~TYq~Ll 239 (554)
++.+||++++.+++..|.|||++++..|+++|+.+...+..+.++|+++.+...|+|+|+||+.|++||||+|||||||+
T Consensus 158 R~~~GI~AllLsLK~~P~IRYq~~S~~~~~lAe~vs~~i~~E~~lFdfr~~~~~p~LLiLDR~~DpvTPLL~qWTYQaMv 237 (549)
T KOG1299|consen 158 RSTQGIIALLLSLKKKPVIRYQTSSRACKRLAEEVSYRITKESTLFDFRRTDSPPLLLILDRRDDPVTPLLNQWTYQAMV 237 (549)
T ss_pred HhHhhHHHHHHhccCCCeeEeecCCHHHHHHHHHHHHHHhhhhhhcccccCCCCCeEEEEecCCCCCchhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999988888999988888899999999999999999999999999
Q ss_pred HhhhccCCCeEEEcccCCCCCCcceEEccCCCChhccccccCchhhHHHHHHHHHHHHHHHHhhccCcccccccccccCh
Q psy11096 240 HELLTINNNRVDLSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKRHEGVCDFYSSNLFMNY 319 (554)
Q Consensus 240 ~dl~~I~~~~v~~~~~~~~~~~~~~~~L~~~~D~~~~~~r~~~f~~v~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 319 (554)
||++||++|+|++...++.+++.++++||+.+|+||+..++.||+|+|+.|...+++|+.+++.++. -.++
T Consensus 238 HEl~gi~nnrvdls~~~~~~kd~~evvLS~~~D~Ff~~nmy~NfgEiG~~IK~lv~~fq~k~~~~~~---------iesi 308 (549)
T KOG1299|consen 238 HELLGIKNNRVDLSKVPSIPKDLEEVVLSSEQDPFFKNNMYANFGEIGSNIKQLVSEFQFKTKTNSN---------IESI 308 (549)
T ss_pred HHHhccccCEEeeccCCCCccccceeeeccccchHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhchh---------hhhH
Confidence 9999999999999998888777789999999999999999999999999999999999997765542 4579
Q ss_pred hhHHHHHHHHHHHHHHHH-HHhhhhhcHHHHHHHHH----------------ccC---hhH-HHHHHhCCCCChHHHHHH
Q psy11096 320 GEIGQTIKLLMDDFNKRA-KSQQKVESIQDMKAFVE----------------NYP---QFK-MKKLLTSGKIRDVEAVRL 378 (554)
Q Consensus 320 ~el~~~v~~l~~~~~~~~-~~~~~~~~i~~~~~~~~----------------~~~---~~~-i~~ll~~~~~~~~dklRL 378 (554)
.+|+.|+.++| +|++.. ...+++.-+.|+.+.++ +.+ +++ |.++|.+++++..|++||
T Consensus 309 ~Dmk~Fve~YP-efkkmSG~VsKHv~lvgEls~lv~~~nL~evSEvEQ~l~c~~~~~~~~~~i~~LL~n~~vs~~d~lrL 387 (549)
T KOG1299|consen 309 ADMKNFVEDYP-EFKKMSGNVSKHVALVGELSKLVQRRNLLEVSEVEQNLACNGDHGADFNDIKKLLQNEKVSEIDRLRL 387 (549)
T ss_pred HHHHHHHHhcH-HHhhhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCcchhhHHHHHHHHcCCcccHHHHHHH
Confidence 99999999998 577742 23233333333333222 111 222 888999999999999999
Q ss_pred HHHHHHHcCCCChhhHHHHHHHHHHcCCCcccccHHHHHHhhcccccccccCCCCCCcchhhhhhhhhhhhcccCCcccc
Q psy11096 379 VMLYAIRYEHHSNNDLSGLMDILRRIGVSESLVQMPLQVLDYSNEHSKYTHHNDSFSATQDVMVKKTQRFLKDLKGVENV 458 (554)
Q Consensus 379 l~L~~l~~~g~~~~~~~~l~~~l~~~G~~~~~~~~l~~l~~~~~~~~~~~~~~~~f~~~~~~~~~~~k~~~~~~~~~~~~ 458 (554)
+|||+|.++..++.+...|.+.|+..|-. .-..+..|.+++|...+ +.++|+..+ ....++++.++++|++++
T Consensus 388 v~lYaLr~e~~~~~~~~~L~~~l~~~~~~--~~~~v~~ll~~~G~~~R---~~dlf~~~~--~v~i~R~~~kglkgvENV 460 (549)
T KOG1299|consen 388 VALYALRYERHPPNELRQLPQILREQGPK--KPELVPFLLKYAGLHVR---QGDLFGPND--LVPIARRFIKGLKGVENV 460 (549)
T ss_pred HHHHHHHhccCChHHHHHHHHHHHhcCCC--cchhHHHHHHhcCcccc---cccccCcch--hHHHHHHHhhccCcchhh
Confidence 99999999999999999999988887743 45678888999998877 789999775 556778888899999999
Q ss_pred cccCcchHHHHHHHHhcCCCCCCCccccCCCCCCCCCCCCCCeEEEEEECCCCHHHHHHHHHHHhccCCCCceEEEcccc
Q psy11096 459 YTQHEPVLKDILDDLVKGKLKDTHFPYLDPYQGRSEGSRWYQDIIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATT 538 (554)
Q Consensus 459 ~s~y~P~~~~ive~l~~~~l~~~~~p~~~~~~~~~~~~~~~~~viVFviGGvTy~E~~al~~l~~~~~~~~~~iiigsT~ 538 (554)
|.+|.|.++++++++.+|++++..||++++...+ .+++.|||||+||+||+|++.++++..+ +.|.+|+.|+|.
T Consensus 461 ytQH~P~lk~~l~~~~rgRl~~~~~p~l~~~~s~----~~pq~IIVfivGGaTYEEa~~V~~~N~t--n~g~rvvLgGtt 534 (549)
T KOG1299|consen 461 YTQHQPLLKSTLEDLFRGRLKEIDYPFLGSQTSR----DRPQDIIVFIVGGATYEEARVVHELNAT--NPGVRVVLGGTT 534 (549)
T ss_pred hhccCHHHHHHHHHHHhcccccCCCccccccccc----CCCceEEEEEECCccHHHHHHHHHHhcC--CCceEEEEcceE
Confidence 9999999999999999999999999999875444 7889999999999999999999999977 589999999999
Q ss_pred ccChhHHHHHHhcC
Q psy11096 539 VHNSTSFMQQVRSH 552 (554)
Q Consensus 539 i~~~~~fl~~l~~l 552 (554)
|+|..+|++++...
T Consensus 535 vlntk~f~~di~~a 548 (549)
T KOG1299|consen 535 VLNTKSFIDEIMAA 548 (549)
T ss_pred EechHHHHHHHhcc
Confidence 99999999998754
No 2
>KOG1300|consensus
Probab=100.00 E-value=2.8e-84 Score=666.02 Aligned_cols=521 Identities=22% Similarity=0.398 Sum_probs=418.9
Q ss_pred CcHHHHHHHHH-HHhhccCC-CceEEEEEcCCCchhhhcccChhHHhhcCeEEEeecccccccccCCCCCCcEEEEEcCC
Q psy11096 1 MNVVRAIKQYV-IKMTEQSG-PGMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIALLRPT 78 (554)
Q Consensus 1 m~l~~~~~~~i-~~~l~~~~-~~~KvLv~D~~~~~ils~~~~~~~L~~~gV~~v~~l~~~~~~~r~~~~~~~~iy~i~pt 78 (554)
|+|++++++.+ .++++... ..|||||+|+.+++++|+||++++++++||++++.|+. +|+|+|.+.||||++|+
T Consensus 1 m~l~~l~~~kil~~v~~~~k~g~wkVLi~Dk~~~~ilss~~km~~i~~egIt~ve~i~~----~ReP~~SmeaIY~i~pt 76 (593)
T KOG1300|consen 1 MGLKELVKKKILEDVLRVEKKGEWKVLVVDKLTMRILSSCCKMSEILEEGITIVEDINK----RREPLPSMEAIYFITPT 76 (593)
T ss_pred CchHHHHHHHHHHHhcccCCCCeeEEEEecchHHHHHHHHHHHHHHHHcCceeeeeccc----cCCCCCcceeEEEecCc
Confidence 78999977776 55776432 45999999999999999999999999999999999988 58999999999999999
Q ss_pred HHHHHHHHHHhc--CCCCceEEEEecCCCChhhHHHHhccCccccccceeEeeceEEeccCCeEEecCCCCCCCCCCC--
Q psy11096 79 KENIALLCKELK--NPKFGSYYIYFTNIIPKADIKTLAEYDEQESVREIEELYADYLPILPHFFSLNIPLCSNGHFWD-- 154 (554)
Q Consensus 79 ~~~i~~i~~d~~--~~~y~~~~i~f~~~~~~~~~~~l~~~~~~~~i~~i~e~~ldf~pld~~lfsl~~p~~f~~~~~~-- 154 (554)
.++|++++.|++ .|+|+++||+|++.|++.+++.|..+.....+.+++|++++|+|+|+++|+++.|++|..++.+
T Consensus 77 ~~~V~~~i~Df~~~~~~Y~~ahifF~~~c~~~lf~~l~ks~~a~~i~tlkeinl~F~p~ESqvF~~~~~~~~~~~y~~~~ 156 (593)
T KOG1300|consen 77 EESVDCLIKDFEGRSPLYKAAHIFFLDPCPDPLFNKLSKSRAAKKIKTLKEINLAFIPYESQVFTLDSPDAFLQLYSPDN 156 (593)
T ss_pred hhhHHHHHHhhcccCcccceEEEEEcCCCCHHHHHHHHhhhHhhhhhhheecccccceecceeeeecChhhHHHhcCchh
Confidence 999999999994 5789999999999999999999998778889999999999999999999999999998877643
Q ss_pred ----hHHHHHHHHHHHHHHHHhCCCCeEEecCCc-----HHHHHHHHHHHHHHHhhhcccCCCCCCCCcEEEEeeCCCCC
Q psy11096 155 ----PVHLVRSSQGLIALLLSLNKNPVIRYQASS-----EMTKRLAEKVKETIIKEEKLFDMRQGDAVPVLLIIDRTCDP 225 (554)
Q Consensus 155 ----~~~l~~ia~~L~~l~~~~g~~P~I~~~~~~-----~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~LiIlDR~~Dl 225 (554)
...+..+|++|++||.++|.+|.|||.+.. ..|+.||+.++.++......+...+..+++.|||+||++|+
T Consensus 157 a~~~~~~l~~~a~~I~tvCatL~e~P~vRy~~~~~~~as~l~~~va~~l~~~~~~~~~~~~~~p~~~~seLlIlDRs~D~ 236 (593)
T KOG1300|consen 157 AAIIDANLEKIADQIATVCATLGEYPNVRYRGDFARNASELAQKVAAKLWDAYKAYKPSIGNGPQKTRSELLILDRSFDP 236 (593)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhCcCcceeeccccccCHHHHHHHHHHHHHHHHHhcccccCCCCCcccceEEEEeccccc
Confidence 357899999999999999999999999763 35677777777777654333333344678999999999999
Q ss_pred cccccchhhHHHHHHhhhccCCCeEEEcccCCCCCCcceEEccCCCChhccccccCchhhHHHHHHHHHHHHHHHHhhcc
Q psy11096 226 ITPLLSQWTYQAMLHELLTINNNRVDLSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKRHE 305 (554)
Q Consensus 226 ~TpLl~~~TYq~Ll~dl~~I~~~~v~~~~~~~~~~~~~~~~L~~~~D~~~~~~r~~~f~~v~~~i~~~~~~l~~~~~~~~ 305 (554)
++||+|+||||||+||+++|+++.+.+.....++..++++.| +++|++|.++||+|+++|.+.+++.+++|..+.+...
T Consensus 237 iaPlLHE~TyqAM~~DLl~iend~Y~ye~~g~~g~~kk~vll-de~D~~WveLRH~HIadvse~l~~~~k~f~~~nk~~~ 315 (593)
T KOG1300|consen 237 VAPLLHEFTYQAMAYDLLPIENDVYRYETPGKSGEKKKEVLL-DEDDDLWVELRHKHIADVSERLTKKMKNFSSKNKRLQ 315 (593)
T ss_pred cchHHHHHHHHHHHHHHHhhcCCEEEEecCCCCCCccceeec-ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999999999999765444444567777 4899999999999999999999999999987764432
Q ss_pred CcccccccccccChhhHHHHHHHHHHHHHHHHH-HhhhhhcHH-H-HHHH----------HHccC---hhH---------
Q psy11096 306 GVCDFYSSNLFMNYGEIGQTIKLLMDDFNKRAK-SQQKVESIQ-D-MKAF----------VENYP---QFK--------- 360 (554)
Q Consensus 306 ~~~~~~~~~~~~~~~el~~~v~~l~~~~~~~~~-~~~~~~~i~-~-~~~~----------~~~~~---~~~--------- 360 (554)
.+....++.+|.++|+++| .|+++.. ...++ +++ + |+.+ .+++- +..
T Consensus 316 ------~~~k~~S~kDL~~mv~~lp-qy~k~~~Kls~Hl-~LA~eC~~~~~~~L~~l~~iEQDLa~G~Daeg~kik~~~~ 387 (593)
T KOG1300|consen 316 ------TKSKETSTKDLSKMVKKLP-QYQKELDKLSLHL-ELAEECMKKFQEGLEKLGAIEQDLATGTDAEGEKIKDSLR 387 (593)
T ss_pred ------ccccccchHHHHHHHHhch-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccHHHHHH
Confidence 2233578999999999998 4777543 22222 221 1 2222 11110 110
Q ss_pred -HHHHHhCCCCChHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCCcccccHHHHHHhhcccccccccCCCCCCcchh
Q psy11096 361 -MKKLLTSGKIRDVEAVRLVMLYAIRYEHHSNNDLSGLMDILRRIGVSESLVQMPLQVLDYSNEHSKYTHHNDSFSATQD 439 (554)
Q Consensus 361 -i~~ll~~~~~~~~dklRLl~L~~l~~~g~~~~~~~~l~~~l~~~G~~~~~~~~l~~l~~~~~~~~~~~~~~~~f~~~~~ 439 (554)
+.+++.+..+...||+|++++|.+..+|+.+.+ |.+++++.|++.++++++.++..++..... +.|..+.+
T Consensus 388 ~~~p~l~~~~~~~~dklR~Illy~~~~~Gi~ee~---l~kL~~~~~i~~~~~~ii~~~~~~~~~~~~-----~~~~~k~~ 459 (593)
T KOG1300|consen 388 DLLPILLESNVRLLDKLRLILLYIFERKGIIEEN---LAKLLQHAGISVEEMQIIQNLHILGVPVTK-----DSFLLKFD 459 (593)
T ss_pred hhhhhhcccCchHHHHHHHHHHHHHhcCCccHHH---HHHHhcccCCCchHHHHHhhHHHhCCcccc-----CcccccCC
Confidence 556676788999999999999999999998744 555577899999999999999988875443 22221110
Q ss_pred hhhhhhhhhhcc-cCCcccccccCcchHHHHHHHHhcCCCCCCCccccCCCCC----------CCC----------CCCC
Q psy11096 440 VMVKKTQRFLKD-LKGVENVYTQHEPVLKDILDDLVKGKLKDTHFPYLDPYQG----------RSE----------GSRW 498 (554)
Q Consensus 440 ~~~~~~k~~~~~-~~~~~~~~s~y~P~~~~ive~l~~~~l~~~~~p~~~~~~~----------~~~----------~~~~ 498 (554)
..+ -++ .....|-.|||+|.++.|+|++++++|+.++|||...++. |.+ ....
T Consensus 460 ----~~~--rker~~e~tyqlSR~~P~Ik~ilE~~i~~~Ld~~~fp~~~~~s~~~~~~~~~Sar~~~~~~~k~~~~~~~~ 533 (593)
T KOG1300|consen 460 ----PPE--RKERVEEQTYQLSRWVPVIKNILEKLIEDRLDKKHFPYLNDTSETSSGSAATSARYGHPLSNKTPSAFKKP 533 (593)
T ss_pred ----CCc--cccccccceeeeeeeehHHHHHHHHHHhccCChhhCccccCCccccccCccccccccCcccccCcchhhcc
Confidence 000 011 1122355589999999999999999999999999976641 110 0235
Q ss_pred CCeEEEEEECCCCHHHHHHHHHHHhccCCCCceEEEccccccChhHHHHHHhc
Q psy11096 499 YQDIIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQVRS 551 (554)
Q Consensus 499 ~~~viVFviGGvTy~E~~al~~l~~~~~~~~~~iiigsT~i~~~~~fl~~l~~ 551 (554)
.+++|||||||+||+|+|++|+++++ .+++|+||||+|++|.+|++.|+.
T Consensus 534 g~ri~VfIiGGvT~SEmRvaYevs~~---~~~EViiGS~~iltP~~fL~~lk~ 583 (593)
T KOG1300|consen 534 GQRIIVFIIGGVTFSEMRVAYEVSEK---LNREVIIGSDHILTPTKFLDDLKL 583 (593)
T ss_pred CceEEEEEeCCccHHHHHHHHHHHHh---hCceEEECCcccCCHHHHHHHHhh
Confidence 68999999999999999999999999 789999999999999999999874
No 3
>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis []. They regulate vesicle transport by binding to a t-SNARE from the syntaxin family. This process is thought to prevent SNARE complex formation, a protein complex required for membrane fusion. Whereas Sec1 molecules are essential for neurotransmitter release and other secretory events, their interaction with syntaxin molecules seems to represent a negative regulatory step in secretion []. ; GO: 0006904 vesicle docking involved in exocytosis, 0016192 vesicle-mediated transport; PDB: 3C98_A 3PUJ_B 1FVH_A 1FVF_A 1EPU_A 2XHE_A 1MQS_A 2PJX_A 3PUK_A 1Y9J_A.
Probab=100.00 E-value=2.6e-84 Score=715.51 Aligned_cols=507 Identities=28% Similarity=0.501 Sum_probs=383.4
Q ss_pred eEEEEEcCCCchhhhcccChhHHhhcCeEEEeecccccccccCCCCCCcEEEEEcCCHHHHHHHHHHhcCCCCceEEEEe
Q psy11096 22 MKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIALLRPTKENIALLCKELKNPKFGSYYIYF 101 (554)
Q Consensus 22 ~KvLv~D~~~~~ils~~~~~~~L~~~gV~~v~~l~~~~~~~r~~~~~~~~iy~i~pt~~~i~~i~~d~~~~~y~~~~i~f 101 (554)
|||||+|+.++++||++|++++|+++||++++.|++. |+|+|+.+|||||+|+.+|+++|++|++++.|++|||+|
T Consensus 1 wKvLi~D~~~~~ils~~~~~~~L~~~gV~~i~~l~~~----r~~~~~~~~iy~i~p~~~~i~~i~~~~~~~~~~~~~i~f 76 (564)
T PF00995_consen 1 WKVLILDKSTLKILSSLCSMSDLLEHGVTLIEKLENK----REPMPSMDAIYFIRPTPENIKRIIKDLKNPPYRSYHIFF 76 (564)
T ss_dssp -EEEEE-HHHHHHHHCCS-HHHHHTTTEEEEEETTS------S-BTTSEEEEEE-S-HHHHHHHHHHCHSTSBSEEEEEE
T ss_pred CEEEEECcccHHHHHhhcCHHHHHHcCCceEeeccch----hhcCCCcceEEEEcCcHHHHHHHHHHHHhcccccEEEEE
Confidence 9999999999999999999999999999999999994 899999999999999999999999999999999999999
Q ss_pred cCCCChhhHHHHhccCccccccceeEeeceEEeccCCeEEecCCCCCCCC---CCChHHHHHHHHHHHHHHHHhCCCCeE
Q psy11096 102 TNIIPKADIKTLAEYDEQESVREIEELYADYLPILPHFFSLNIPLCSNGH---FWDPVHLVRSSQGLIALLLSLNKNPVI 178 (554)
Q Consensus 102 ~~~~~~~~~~~l~~~~~~~~i~~i~e~~ldf~pld~~lfsl~~p~~f~~~---~~~~~~l~~ia~~L~~l~~~~g~~P~I 178 (554)
+|+++..+++.|++.++.+.|.++.|+++||+|+|+|+|||++|++|..+ ..+.+.++++|++|+++|.++|.+|.|
T Consensus 77 ~~~~~~~~~~~l~~~~~~~~i~~i~e~~~~~~pld~d~fsl~~~~~~~~~~~~~~~~~~l~~~a~~L~~l~~~~g~~p~I 156 (564)
T PF00995_consen 77 TPRVSESLLEILAESGVLGRIKSIKEFNLDFIPLDSDLFSLEIPNSFSDLYSSDGDESSLQRIADSLLSLQLTLGEIPNI 156 (564)
T ss_dssp SS---HHHHHHHHHSCGGGGEEEEEETT--SEEECTTEEEES-TCHHHHHHSTTGHHHHHHHHHHHHHHHHHHTT---EE
T ss_pred ehhhhhHHHHhhhhcCccceecccccceeEEEEccchhhhhcccchHHHHhccccchhHHHHHHHHHHHHHHHhCCCCeE
Confidence 99999999999999999999988999999999999999999999998755 346788999999999999999999999
Q ss_pred EecCCcHHHHHHHHHHHHHHHhhhcccC-----C--CCCCCCcEEEEeeCCCCCcccccchhhHHHHHHhhhccCCCeEE
Q psy11096 179 RYQASSEMTKRLAEKVKETIIKEEKLFD-----M--RQGDAVPVLLIIDRTCDPITPLLSQWTYQAMLHELLTINNNRVD 251 (554)
Q Consensus 179 ~~~~~~~~a~~la~~l~~~~~~~~~~~~-----~--~~~~~~~~LiIlDR~~Dl~TpLl~~~TYq~Ll~dl~~I~~~~v~ 251 (554)
||+|+ ..|++||+.+.+++++....+. . ....++++|||+||++|++|||+||||||||+||+|||++|.|+
T Consensus 157 ~~~g~-~~a~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~iTPll~~~TYe~li~d~~~i~~~~v~ 235 (564)
T PF00995_consen 157 RYKGN-SNAKRVAELLQKKLQENEDNFSSSNPDFPPGSSFERPLLIILDRSVDLITPLLHQWTYEGLIDDLFGINNNKVE 235 (564)
T ss_dssp EE-TT-CHHHHHHHHHHHHHHHHHTTHCHCSTTTT-SCSCCSEEEEEEEGGG-SSTTTS---BHHHHHHHHSTEBTTEEE
T ss_pred EEeCc-hhHHHHHHHHHHHhhhccccccccccccCCccccCCceEEEecccccccchhhcCceeeeEHHhhhhhcCCEec
Confidence 99997 3799999999988876321111 0 12234589999999999999999999999999999999999999
Q ss_pred EcccCCCCCCcceEEccCCCChhccccccCchhhHHHHHHHHHHHHHHHHhhccCcccccccccccChhhHHHHHHHHHH
Q psy11096 252 LSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKRHEGVCDFYSSNLFMNYGEIGQTIKLLMD 331 (554)
Q Consensus 252 ~~~~~~~~~~~~~~~L~~~~D~~~~~~r~~~f~~v~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~el~~~v~~l~~ 331 (554)
++.+.+.+..++++.|+ ++|++|.++||+||++|++.|.+.+++++++. + .......++++|+++|+++|+
T Consensus 236 ~~~~~~~~~~~~~~~L~-~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~v~~lp~ 306 (564)
T PF00995_consen 236 IPDEINSGENKKKVVLN-SNDPFFNEIRHLHFSEVGEKLNKKAKELKEEY-E-------KSRSKSKSIQEMKEFVKKLPE 306 (564)
T ss_dssp EEECSSSSECEEEEE-S-TTCTCHHHHTTSBCHHHHHHHHHHHHHHHHHC-H-----------STTTHHCHHHHHCCHHH
T ss_pred cccCCCccccceeEecC-CCCHHHHHHHhhCHHHHHHHHHHHHHHHHHhh-c-------cccchhhHHHHHHHHHHHChH
Confidence 98765444334788997 59999999999999999999999999999653 1 012346789999999999884
Q ss_pred HHHHHHH---Hhhhhhc-H---------H---HHHH-HHHc-cCh---hH-HHHHHhCCCCChHHHHHHHHHHHHHcCCC
Q psy11096 332 DFNKRAK---SQQKVES-I---------Q---DMKA-FVEN-YPQ---FK-MKKLLTSGKIRDVEAVRLVMLYAIRYEHH 389 (554)
Q Consensus 332 ~~~~~~~---~~~~~~~-i---------~---~~~~-~~~~-~~~---~~-i~~ll~~~~~~~~dklRLl~L~~l~~~g~ 389 (554)
++++.+ .|.++.+ + . ++++ ++.. .+. .+ ++++|.+.+.+..|+|||+|||+++. |+
T Consensus 307 -~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~~~~~~~~~~~~i~~~i~~~~~~~~d~LRLl~L~sl~~-g~ 384 (564)
T PF00995_consen 307 -LQEQQKSLSLHTNIAEEILKIIKKRNLDELIELEQDIASGEDSDGELLQYIEELINSRKISIEDKLRLLCLYSLTN-GI 384 (564)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCHTTSHB-SCHHHHHHSTTSTHHHHHHHHHHHHHHH--H
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhCCccchhhHHHHHHHhhccCCCHHHHHHHHHHHHHHh-cC
Confidence 555433 3433211 0 0 1111 1111 111 12 88998778999999999999999998 99
Q ss_pred ChhhHHHHHHHHHHcCCCcccccHHHHHHhhcccccccccCCCCCCcchhhhh---hhhhhh-hcccCCcccccccCcch
Q psy11096 390 SNNDLSGLMDILRRIGVSESLVQMPLQVLDYSNEHSKYTHHNDSFSATQDVMV---KKTQRF-LKDLKGVENVYTQHEPV 465 (554)
Q Consensus 390 ~~~~~~~l~~~l~~~G~~~~~~~~l~~l~~~~~~~~~~~~~~~~f~~~~~~~~---~~~k~~-~~~~~~~~~~~s~y~P~ 465 (554)
++++++.+++.+.+.|++.+++.++.+|+++|+...+. + +..|......+. +..... ...+++++|+|+||+|+
T Consensus 385 ~~~~~~~l~~~l~~~~~g~~~l~~l~~L~~~g~~~~~~-~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~y~Pl 462 (564)
T PF00995_consen 385 KGKDYDQLKKLLLQAGYGIEALQLLNNLEKLGLLKSKD-N-SSNFQSIRKKLNLISKFNDKNDKNNPKDISYVYSGYAPL 462 (564)
T ss_dssp TCBHHHHHHHHHHHTT--HCHHHHHHHGGGGTHHCBSH-T-TS--CTTC-TT---HHTTCCCSSSSCSCCCSTTCT---H
T ss_pred CcchHHHHHHHhhhcCCChHHHHHHHHHHHhcchhhcc-C-ccchhhhcccccccccccccccccccccccchhcccccH
Confidence 99999999998877777788999999999999865441 0 001211110010 001111 12356789999999999
Q ss_pred HHHHHHHHhcCCCC-CCCccccCCCCCC--C----------------CCCCCCCeEEEEEECCCCHHHHHHHHHHHhccC
Q psy11096 466 LKDILDDLVKGKLK-DTHFPYLDPYQGR--S----------------EGSRWYQDIIVFMVGGTTYEECLCVHQMNTSSG 526 (554)
Q Consensus 466 ~~~ive~l~~~~l~-~~~~p~~~~~~~~--~----------------~~~~~~~~viVFviGGvTy~E~~al~~l~~~~~ 526 (554)
++++|+.+++++++ .+.||++++...+ + ....+.++|||||||||||+|++++|+++++
T Consensus 463 i~rlve~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viVf~vGGvTy~Ei~~l~~l~~~-- 540 (564)
T PF00995_consen 463 IVRLVEDLIKGKLDKEEEFPYLDPKPKNLNGSSFSLRSSKPSRSKTQPSNKPRKRVIVFFVGGVTYSEIRALRELSKK-- 540 (564)
T ss_dssp HHHHHHHHHTTHSHHTTTSEBSSTCC-----SSSSSS-------------S-SSEEEEEEETEBEHHHHHHHHHHHTT--
T ss_pred HHHHHHHHhhccCCcccccccccccccccCCCCcccccccccccccccccCCCCEEEEEEEcCCcHHHHHHHHHHHHh--
Confidence 99999999999997 8899999876511 0 0124567899999999999999999999998
Q ss_pred CCC--ceEEEccccccChhHHHHHH
Q psy11096 527 NNA--RAILLGATTVHNSTSFMQQV 549 (554)
Q Consensus 527 ~~~--~~iiigsT~i~~~~~fl~~l 549 (554)
.+ ++|+||||+|+||++|+++|
T Consensus 541 -~~~~~~iiigsT~il~~~~fl~~L 564 (564)
T PF00995_consen 541 -LGPGKEIIIGSTSILNPNDFLESL 564 (564)
T ss_dssp -SSSSSEEEEEESSBE-HHHHHHHH
T ss_pred -hCCCcEEEEEeCCccCHHHHHHhC
Confidence 55 99999999999999999986
No 4
>KOG1301|consensus
Probab=100.00 E-value=8.8e-82 Score=633.10 Aligned_cols=543 Identities=20% Similarity=0.349 Sum_probs=432.4
Q ss_pred cHHHHHHHHHHHhhcc---------C-CCceEEEEEcCCCchhhhcccChhHHhhcCeEEEeecccccccccCCCCCCcE
Q psy11096 2 NVVRAIKQYVIKMTEQ---------S-GPGMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKC 71 (554)
Q Consensus 2 ~l~~~~~~~i~~~l~~---------~-~~~~KvLv~D~~~~~ils~~~~~~~L~~~gV~~v~~l~~~~~~~r~~~~~~~~ 71 (554)
||.+.|-..|.+||.- . .+-|||||+|..+..+||++++++||++||||++..|.. .|+|+|+.+|
T Consensus 11 slRe~Qi~al~~mlnLN~~~~~~~~~~epvWKVLI~Dr~gq~iISpll~VkeLRe~GvTlH~li~~----dR~Pi~DVPA 86 (621)
T KOG1301|consen 11 SLRERQIVALKKMLNLNKPVNKNGTAAEPVWKVLILDRFGQDIISPLLRVKELREHGITLHLLITS----DRDPIPDVPA 86 (621)
T ss_pred hHHHHHHHHHHHHHHhcCCccccccccCCceEEEEEecccchhhcccccHHHHHhcCcEEEEeecc----ccCCCCCCCe
Confidence 6788888889998851 1 466999999999999999999999999999999999999 5899999999
Q ss_pred EEEEcCCHHHHHHHHHHhcCCCCceEEEEecCCCChhhHHHHhcc----CccccccceeEeeceEEeccCCeEEecCCCC
Q psy11096 72 IALLRPTKENIALLCKELKNPKFGSYYIYFTNIIPKADIKTLAEY----DEQESVREIEELYADYLPILPHFFSLNIPLC 147 (554)
Q Consensus 72 iy~i~pt~~~i~~i~~d~~~~~y~~~~i~f~~~~~~~~~~~l~~~----~~~~~i~~i~e~~ldf~pld~~lfsl~~p~~ 147 (554)
||||+||.||+++|++|+++.+|.+||++|++.+++..+|.||.. |....|.+|++.+++|+.+|+|+|+|.++++
T Consensus 87 VYFV~Pt~eNid~i~~Dl~~~lY~~~ylNF~Ssi~R~~LE~lA~~a~~~g~v~~I~kVyDQYlnFI~LEddlFsL~~~~~ 166 (621)
T KOG1301|consen 87 VYFVSPTEENIDRIIQDLSKGLYDSYYLNFISSISRSLLEDLASAASETGAVLQIHKVYDQYLNFIVLEDDLFSLGMQNS 166 (621)
T ss_pred EEEeCCchHhHHHHHHHHHHhhhhhheeeccccccHHHHHHHHHHHhhcchHHHHHHHHHhHhhheeecchhhhhccccc
Confidence 999999999999999999999999999999999999999999975 4556788899999999999999999999999
Q ss_pred CCCCCC-------ChHHHHHHHHHHHHHHHHhCCCCeEEecCCcHHHHHHHHHHHHHHHhh-----hcccCCC---CCCC
Q psy11096 148 SNGHFW-------DPVHLVRSSQGLIALLLSLNKNPVIRYQASSEMTKRLAEKVKETIIKE-----EKLFDMR---QGDA 212 (554)
Q Consensus 148 f~~~~~-------~~~~l~~ia~~L~~l~~~~g~~P~I~~~~~~~~a~~la~~l~~~~~~~-----~~~~~~~---~~~~ 212 (554)
|..++. .+..++++|+||++++.++|.+|.|||..|+ .|..||++|.++++++ +++|.+. .+.+
T Consensus 167 ~~~~n~p~t~e~ei~~~~~~IvdgLF~v~vTlG~VPiIRcp~g~-aAEmvA~kL~qKLRd~l~d~k~~lft~~~~~~~~~ 245 (621)
T KOG1301|consen 167 FHAINRPSTTEEEINALMDRIVDGLFSVFVTLGEVPIIRCPKGG-AAEMVARKLDQKLRDNLRDTKNNLFTMDGGGAGFQ 245 (621)
T ss_pred chhccCCCchHHHHHHHHHHHHHHHHHHheecccceeEECCCCC-HHHHHHHHHHHHHHHHhHhhcccceeccCcccCCC
Confidence 965531 2356899999999999999999999999885 7999999998887652 3444432 2358
Q ss_pred CcEEEEeeCCCCCcccccchhhHHHHHHhhhccCCCeEEEcccCCCCCCcceEEccCCCChhccccccCchhhHHHHHHH
Q psy11096 213 VPVLLIIDRTCDPITPLLSQWTYQAMLHELLTINNNRVDLSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKL 292 (554)
Q Consensus 213 ~~~LiIlDR~~Dl~TpLl~~~TYq~Ll~dl~~I~~~~v~~~~~~~~~~~~~~~~L~~~~D~~~~~~r~~~f~~v~~~i~~ 292 (554)
||+|+|+||++|++||+.|.||||||+||+|+++.|+|+++.+++. ..+|.+.|+ .+|+||..+.+..|++|++.|++
T Consensus 246 RPvLvl~DRn~Dlat~l~HtWtYqaLvhDvl~l~lN~vtv~~~~~~-~~~k~yDld-~~D~fW~~n~~~pFP~VAE~Ve~ 323 (621)
T KOG1301|consen 246 RPVLVLLDRNIDLATPLHHTWTYQALVHDVLDLELNRVTLESESKR-KKKKSYDLD-PNDKFWRRNKGSPFPEVAENVEE 323 (621)
T ss_pred CceEEEEecccccccccccceehHHHHHHHHhcccceEEeeccccC-CCCccccCC-CccHHHHhcCCCCCchHHHHHHH
Confidence 9999999999999999999999999999999999999999886522 234678885 79999999999999999999999
Q ss_pred HHHHHHHHHhhcc---Ccccccc--cccccChhhHHHHHHHHHHHHHHHHH--Hhhhhhc-----HHH--HHHHHH--cc
Q psy11096 293 LMDDFNKRAKRHE---GVCDFYS--SNLFMNYGEIGQTIKLLMDDFNKRAK--SQQKVES-----IQD--MKAFVE--NY 356 (554)
Q Consensus 293 ~~~~l~~~~~~~~---~~~~~~~--~~~~~~~~el~~~v~~l~~~~~~~~~--~~~~~~~-----i~~--~~~~~~--~~ 356 (554)
++.+|+.++.++. |.....+ -+...+...++++|+.+|+...++.. .|+++.+ |.+ +..|.+ .-
T Consensus 324 eL~~Yk~~~~ei~r~~G~sg~~e~~~~~~~Dtt~l~~aV~sLPEL~ekK~~ID~HtnIatalL~~IkeR~lD~ff~~E~~ 403 (621)
T KOG1301|consen 324 ELESYKNEEAEIKRKMGLSGEDEGAIDELNDTTKLQSAVSSLPELTEKKRLIDLHTNIATALLEQIKERKLDDFFEVEKK 403 (621)
T ss_pred HHHHHHhhHHHHHhhcCCCcccccccccccchHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHhcc
Confidence 9999998776543 4332111 12223334999999999965544432 4555432 111 223322 11
Q ss_pred Ch-----hHHHHHHhC-CCCChHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCCcccccHHHHHHhhcccccccccC
Q psy11096 357 PQ-----FKMKKLLTS-GKIRDVEAVRLVMLYAIRYEHHSNNDLSGLMDILRRIGVSESLVQMPLQVLDYSNEHSKYTHH 430 (554)
Q Consensus 357 ~~-----~~i~~ll~~-~~~~~~dklRLl~L~~l~~~g~~~~~~~~l~~~l~~~G~~~~~~~~l~~l~~~~~~~~~~~~~ 430 (554)
+. -.+.+++.+ ...+++||||++++|.++.+.++..++++++..|++.|++.++++++++++.+....+.-. .
T Consensus 404 ~~~~~l~~~~l~~~~~~~~gt~EDkLR~~Ii~~ls~et~~~s~le~~e~al~e~~~d~~Al~yvkr~k~~~~~~s~~~-~ 482 (621)
T KOG1301|consen 404 IMSTTLDRSLLDILEDGEAGTPEDKLRLFIIYYLSTETVPQSDLEAVENALTEAGCDLNALKYVKRLKEITKMSSATS-A 482 (621)
T ss_pred cccccccHHHHHHHhcccCCChHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcccccc-c
Confidence 10 114455554 5688999999999999999988899999999999999999999999999988765432200 1
Q ss_pred CCCCCcc-hhhhhhhhhhhhc-ccCCcccccc-cCcchHHHHHHHHhcCCC--CCCCccccCCCCCCCC------CCCCC
Q psy11096 431 NDSFSAT-QDVMVKKTQRFLK-DLKGVENVYT-QHEPVLKDILDDLVKGKL--KDTHFPYLDPYQGRSE------GSRWY 499 (554)
Q Consensus 431 ~~~f~~~-~~~~~~~~k~~~~-~~~~~~~~~s-~y~P~~~~ive~l~~~~l--~~~~~p~~~~~~~~~~------~~~~~ 499 (554)
...-.++ -+|+-+...+-.. -+.||++..+ +..-+++++||.++.+.. ..++|.|+||+..+++ ..++.
T Consensus 483 ~~~~~t~~~~~~~kl~~qg~~~vm~GVKNLlp~~q~lPvT~iveal~~~~sn~etddYl~~DPk~~k~~~~~~~~~r~~f 562 (621)
T KOG1301|consen 483 YSGTTTKIVDLFEKLYSQGSSFVMEGVKNLLPKKQNLPVTRIVEALMDPKSNPETDDYLYFDPKLSKGGSSSLPIKRQPF 562 (621)
T ss_pred ccCCcccHHHHHHHHhhccHHHHHhhHHhcCcccccCcHHHHHHHhhCCCCCccccceEeeccccccCCCccccccccch
Confidence 1110111 1222111111111 1468888775 788899999999998754 4677999999987763 35678
Q ss_pred CeEEEEEECCCCHHHHHHHHHHHhccCCCCceEEEccccccChhHHHHHHhcCC
Q psy11096 500 QDIIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQVRSHK 553 (554)
Q Consensus 500 ~~viVFviGGvTy~E~~al~~l~~~~~~~~~~iiigsT~i~~~~~fl~~l~~l~ 553 (554)
++.|||||||++|-|+..|.+|++++. ..++||||||+|+||.+|++|+++||
T Consensus 563 ~eaIVFvVGGGNYiEYqnL~d~~krq~-~~krIiYGsTeIln~~eFl~qls~Lg 615 (621)
T KOG1301|consen 563 QEAIVFVVGGGNYIEYQNLVDLAKRQQ-TVKRIIYGSTEILNAREFLEQLSRLG 615 (621)
T ss_pred hheEEEEEcCcCeeehhhHHHHHHhhc-ccceeEecchhcCCHHHHHHHHHHhc
Confidence 999999999999999999999998852 46899999999999999999999987
No 5
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion]
Probab=100.00 E-value=4.3e-79 Score=641.13 Aligned_cols=531 Identities=30% Similarity=0.457 Sum_probs=416.8
Q ss_pred CcHHHHHHHHHHHhhccCCC--ceEEEEEcCCCchhhhcccChhHHhhcCeEEEeecccccccccCCCCCCcEEEEEcCC
Q psy11096 1 MNVVRAIKQYVIKMTEQSGP--GMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIALLRPT 78 (554)
Q Consensus 1 m~l~~~~~~~i~~~l~~~~~--~~KvLv~D~~~~~ils~~~~~~~L~~~gV~~v~~l~~~~~~~r~~~~~~~~iy~i~pt 78 (554)
|+|+++|+.+|.+++..+.+ .|||||+|+.+..+||+++++++|++|||++++.|+++ |+|.++.+|||||+||
T Consensus 2 ~dl~e~q~~~i~~~i~~v~~~n~~KvLllD~~t~~ils~~~~~s~lle~~I~~~~~i~~~----R~~~~~~~aiy~v~pt 77 (582)
T COG5158 2 MDLLELQKNKILDEIFLVQPANIWKVLLLDKDTTSILSSLITTSELLEHGITLVDLIENK----REPISDLPAIYFVRPT 77 (582)
T ss_pred ccHHHHHHHHHHHHHHhcCCCcceEEEEEecchHHHHHhhcchHHHHhcCceEEEeecCC----CCCCCCCCEEEEEcCc
Confidence 89999999999998876544 49999999999999999999999999999999999995 8999999999999999
Q ss_pred HHHHHHHHHHhcC--CCCceEEEEecCCCChhhHHHHhccCccccccceeEeeceEEeccCCeEEecCCCCCCCCC--CC
Q psy11096 79 KENIALLCKELKN--PKFGSYYIYFTNIIPKADIKTLAEYDEQESVREIEELYADYLPILPHFFSLNIPLCSNGHF--WD 154 (554)
Q Consensus 79 ~~~i~~i~~d~~~--~~y~~~~i~f~~~~~~~~~~~l~~~~~~~~i~~i~e~~ldf~pld~~lfsl~~p~~f~~~~--~~ 154 (554)
.+|+++|++|++. |.|..||+.|+|.+...+++.+++.+....|..|.++++||+++|+++|++++|..|.... +.
T Consensus 78 ~e~i~~i~~D~~~~~~~Y~~~~~~f~~~~~~~l~e~l~es~~~~~i~~V~e~~ldf~~le~dlfsl~~p~~~~~~~~~~~ 157 (582)
T COG5158 78 KENIDLILEDLEQWDPFYLNYHISFLNTVTESLLELLAESGVFEKILSVYEIYLDFFVLESDLFSLNLPESFLESSLPST 157 (582)
T ss_pred hHHHHHHHHHHhccCccccceeEEecccchHHHHHHHhhcCchhheeeeeeeecceEEechHhHhhcCchhhhhhcCCCc
Confidence 9999999999998 8999999999999999999999999998889999999999999999999999999887554 33
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCeEEecCCcHHHHHHHHHHHHHHHhhh-cccCC--CCCCCCcEEEEeeCCCCCcccccc
Q psy11096 155 PVHLVRSSQGLIALLLSLNKNPVIRYQASSEMTKRLAEKVKETIIKEE-KLFDM--RQGDAVPVLLIIDRTCDPITPLLS 231 (554)
Q Consensus 155 ~~~l~~ia~~L~~l~~~~g~~P~I~~~~~~~~a~~la~~l~~~~~~~~-~~~~~--~~~~~~~~LiIlDR~~Dl~TpLl~ 231 (554)
...+..++.||+++|.++|.+|.|||.++ ..|.++|+++...++++. ..+++ ...+.+|+|||+||+.|++|||+|
T Consensus 158 ~~~~~~~v~gl~S~~~slg~~P~Ir~~~~-~~a~~~ak~l~~~~~~~~~~~~~~~~~~~~~~~~LIIlDRs~D~iTPlLh 236 (582)
T COG5158 158 TEALIKIVNGLFSLCVSLGRIPIIRYSGG-KNAEHMAKKLSDEIRNELSINFDGVVSKNPLRPILIILDRSLDPITPLLH 236 (582)
T ss_pred hHHHHHHHhhHHHHHhhcCCcceEEecCC-chHHHHHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCcccchHH
Confidence 34666999999999999999999999998 479999999988877532 22232 223468999999999999999999
Q ss_pred hhhHHHHHHhhhccCCCeEEEcccCCCCCCcceEEccCCCChhccccccCchhhHHHHHHHHHHHHHHHHhhccCccccc
Q psy11096 232 QWTYQAMLHELLTINNNRVDLSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKRHEGVCDFY 311 (554)
Q Consensus 232 ~~TYq~Ll~dl~~I~~~~v~~~~~~~~~~~~~~~~L~~~~D~~~~~~r~~~f~~v~~~i~~~~~~l~~~~~~~~~~~~~~ 311 (554)
+||||||+||++|+++|.|+++..+..+ ..|++.+++.+|+||.++||+||++|++.|.+.+++|+.+++...
T Consensus 237 ~wTYqaml~Dl~~~~~~~v~~~~~~~~g-~~kk~~~~~~~D~~w~~~k~~~f~~v~e~l~~~~~~l~~~~~~~~------ 309 (582)
T COG5158 237 QWTYQAMLHDLLGINNNIVTIPSSSVNG-PEKKFSLSDKDDPFWNDNKFLNFGEVGEKLKKLAKELKTKAQLRH------ 309 (582)
T ss_pred HHHHHHHHHHHHHhhcCeEEeccccccc-ccceeccCCcccHhHHHhccCchhhHHHHHHHHHHHHHHHHhhhh------
Confidence 9999999999999999999997655444 345666777999999999999999999999999999998877543
Q ss_pred ccccccChhhHHHHHHHHHHHHHHHHHHhhhhhcH-HHHH---------HH---HHc----cC-hhHHHHHHhC--CCCC
Q psy11096 312 SSNLFMNYGEIGQTIKLLMDDFNKRAKSQQKVESI-QDMK---------AF---VEN----YP-QFKMKKLLTS--GKIR 371 (554)
Q Consensus 312 ~~~~~~~~~el~~~v~~l~~~~~~~~~~~~~~~~i-~~~~---------~~---~~~----~~-~~~i~~ll~~--~~~~ 371 (554)
+..+.++.+|+++|.++| ++++....-.+|.++ +++- +| .++ .+ +..+.++|.. ....
T Consensus 310 -~~~~~s~~dik~~v~~lp-el~~~~~~l~~H~~l~~e~l~~~~~~~l~~f~eIEq~l~~~~~~~~~i~Dli~~l~~~~~ 387 (582)
T COG5158 310 -KENAKSVNDIKEFVDKLP-ELQKRSRSLNKHLTLASELLKVVEERYLDDFSEIEQNLSTGNDVKSDISDLIELLESGVE 387 (582)
T ss_pred -hhhcccHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhhHHHHHHHHhcCch
Confidence 234578999999999998 577754422222222 1211 11 111 11 2225555542 2222
Q ss_pred hHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCCcccccHHHHHHhhccccccc-----ccCCC---CCCcchhhhhh
Q psy11096 372 DVEAVRLVMLYAIRYEHHSNNDLSGLMDILRRIGVSESLVQMPLQVLDYSNEHSKY-----THHND---SFSATQDVMVK 443 (554)
Q Consensus 372 ~~dklRLl~L~~l~~~g~~~~~~~~l~~~l~~~G~~~~~~~~l~~l~~~~~~~~~~-----~~~~~---~f~~~~~~~~~ 443 (554)
..+||||+|||+++.+|+ .++.+ +.+.+...|++.+++.++++|..+|....+. .+..+ +|.. +..
T Consensus 388 E~~klRllilysL~~~~~-~~~~~-~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~s~~~g~~d~l~~~----~n~ 461 (582)
T COG5158 388 EDDKLRLLILYSLTKDGL-IKDID-ELRLLRIQGYGIEALNFFQRLKELGFLTLKDSKTISLKRGDKDSLFQW----FNT 461 (582)
T ss_pred HHHHHHHHHHHHHhcCcc-hhHHH-HHHHHHhcCCCHHHHHHHHHHHHHhhhhhhcccccccccCCcccccCc----ccc
Confidence 225999999999999997 44443 4455677889899999999999888653321 00111 2111 111
Q ss_pred hhhhhh-cccCCcccccccCcchHHHHHHHHhcCCCCCCCccc-------cCCCC-CCCCCCCCCCeEEEEEECCCCHHH
Q psy11096 444 KTQRFL-KDLKGVENVYTQHEPVLKDILDDLVKGKLKDTHFPY-------LDPYQ-GRSEGSRWYQDIIVFMVGGTTYEE 514 (554)
Q Consensus 444 ~~k~~~-~~~~~~~~~~s~y~P~~~~ive~l~~~~l~~~~~p~-------~~~~~-~~~~~~~~~~~viVFviGGvTy~E 514 (554)
+..... +...++.++|++|.|..+++...++.+.+....++. .+++. .|.....++++++|||+||+||.|
T Consensus 462 y~~s~~~~~~~~~~~v~~~~iP~~k~~~~~~~~~~~~~~~~s~~~~s~~~~~~k~~~~~~~~~~~~~~~VfviGG~ty~E 541 (582)
T COG5158 462 YSLSREHQGVPDLENVYSGLIPLKKDIPIDLLVRRLFEPLKSSQQQSLRLSRPKGRSRSNKKIPQQRILVFVIGGVTYEE 541 (582)
T ss_pred cccccccCCCchHHHHHHhhcchhcccchhhhhhhhcccccchhccceeecccccccccccccccceEEEEEECCeehHH
Confidence 111100 234567789999999999999999887654433332 23331 111223577999999999999999
Q ss_pred HHHHHHHHhccCCCCceEEEccccccChhHHHHHHhcCC
Q psy11096 515 CLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQVRSHK 553 (554)
Q Consensus 515 ~~al~~l~~~~~~~~~~iiigsT~i~~~~~fl~~l~~l~ 553 (554)
++++++++.+. .+++|++|||.|+||.+||+++..++
T Consensus 542 ~~~~~e~~~~~--~~~~ii~Gst~iltp~e~l~~v~~~~ 578 (582)
T COG5158 542 LRVLYELNESQ--NSVRIIYGSTEILTPAEFLDEVKRLG 578 (582)
T ss_pred HHHHHHHHhhc--CCeeEEEcCCceecHHHHHHHHHHhc
Confidence 99999999982 34999999999999999999998775
No 6
>KOG1302|consensus
Probab=100.00 E-value=1.4e-74 Score=596.52 Aligned_cols=521 Identities=20% Similarity=0.297 Sum_probs=405.0
Q ss_pred HHHHHHHHHHHhhccCCCceEEEEEcCCCchhhhcccChhHHhhcCeEEEeecccccccccCCCCCCcEEEEEcCCHHHH
Q psy11096 3 VVRAIKQYVIKMTEQSGPGMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIALLRPTKENI 82 (554)
Q Consensus 3 l~~~~~~~i~~~l~~~~~~~KvLv~D~~~~~ils~~~~~~~L~~~gV~~v~~l~~~~~~~r~~~~~~~~iy~i~pt~~~i 82 (554)
+.+++++.|.++|+ +.+|.|.||||++++++++++.+++.|++|||.....++.+. -.+....+.|||++|+.+|+
T Consensus 17 lq~~a~~eL~~lLd-s~pG~K~lvlD~dL~~pL~~ia~~s~Lk~hgV~~~~~l~~~~---~~~~~~~~~vy~~Rp~~~~~ 92 (600)
T KOG1302|consen 17 LQEVARRELISLLD-SLPGKKELVLDPDLMGPLGLIATASLLKEHGVRRLLHLDAEK---SPNSEVKQVVYFVRPRLENM 92 (600)
T ss_pred HHHHHHHHHHHHHh-cCCCceeEEecccccchhhccccHHHHHHhCcHHhhccCccc---CcccccCeEEEEEcCchHHH
Confidence 56789999999998 579999999999999999999999999999999777888852 12333447999999999999
Q ss_pred HHHHHHhcC----CCCceEEEEecCCCChhhHHHHhccCccccccceeEeeceEEeccCCeEEecCCCCCCCC--CCChH
Q psy11096 83 ALLCKELKN----PKFGSYYIYFTNIIPKADIKTLAEYDEQESVREIEELYADYLPILPHFFSLNIPLCSNGH--FWDPV 156 (554)
Q Consensus 83 ~~i~~d~~~----~~y~~~~i~f~~~~~~~~~~~l~~~~~~~~i~~i~e~~ldf~pld~~lfsl~~p~~f~~~--~~~~~ 156 (554)
+.|++++++ ..-+.|||+|.|+++-.|...|++.++++.+. +.|++++++|+|.|++||++|++|.++ ..|.+
T Consensus 93 ~~ia~~v~~~~~d~~~r~~~vi~~P~~~~~c~~~Lee~gv~~~v~-~~e~~~~~lpld~DllSlEl~~~~~d~~~~gd~s 171 (600)
T KOG1302|consen 93 QLIAEHVENVQRDGFTRDYHVIFVPRRSSLCETLLEEEGVYGLVL-VEEQILDLLPLDGDLLSLELPNSFLDLYLDGDQS 171 (600)
T ss_pred HHHHHHHhhhhhchhcceeEEEEeccHHHHHHHHHHhcccccccc-cchhhhhhccccccchhccchHHHHHHhhccccc
Confidence 999999975 34578999999999999999999999998774 999999999999999999999999855 46889
Q ss_pred HHHHHHHHHHHHHHHhCCCCeEEecCCcHHHHHHHHHHHHHHHhhhcccCCCCCCCCcEEEEeeCCCCCcccccchhhHH
Q psy11096 157 HLVRSSQGLIALLLSLNKNPVIRYQASSEMTKRLAEKVKETIIKEEKLFDMRQGDAVPVLLIIDRTCDPITPLLSQWTYQ 236 (554)
Q Consensus 157 ~l~~ia~~L~~l~~~~g~~P~I~~~~~~~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~LiIlDR~~Dl~TpLl~~~TYq 236 (554)
.+..+|+++.+++..+|.+|.|+..| ..|+++++++.++..++..... +..+.+++||++||++|++|||+||+||+
T Consensus 172 ~l~~va~~l~~LQ~~~G~ip~v~g~G--~~ak~~~~l~~~l~~e~~t~n~-~~~~~~~~liLlDR~~D~vtpLlTQltYe 248 (600)
T KOG1302|consen 172 SLYHVADALVSLQRLYGIIPKVYGKG--ECAKRVWELLKKLEREEATENN-GDRPEIDHLILLDRDVDPVTPLLTQLTYE 248 (600)
T ss_pred hhHHHHHHHHHHHHhhCCCcceeecc--HHHHHHHHHHHHHhhccccccC-CCccccceEEEEeccCcccchhhhHHHHH
Confidence 99999999999999999999999999 5899999999887765422211 22366789999999999999999999999
Q ss_pred HHHHhhhccCCCeEEEcccC------CC---CCCcceEEccCCCChhccccccCchhhHHHHHHHHHHHHHHHHhhccCc
Q psy11096 237 AMLHELLTINNNRVDLSHVS------GI---SPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKRHEGV 307 (554)
Q Consensus 237 ~Ll~dl~~I~~~~v~~~~~~------~~---~~~~~~~~L~~~~D~~~~~~r~~~f~~v~~~i~~~~~~l~~~~~~~~~~ 307 (554)
||+||+|||++|.|+++.+. +. +...++..+.+..|++|+++|++||+.|++.+++.+++++.....
T Consensus 249 GLLDEiy~I~~g~vk~p~~~~~~~q~g~~~~~~~~~~~~l~~~~deIy~eiR~k~f~~v~~~lsk~ak~l~~~~~~---- 324 (600)
T KOG1302|consen 249 GLLDEIYGISSGNVKLPSENFKRNQAGDLGKGKTEKKIVLLYSSDEIYAEIRNKHFNAVGPLLSKKAKELQAQYET---- 324 (600)
T ss_pred HHHHHHhhccCCeEecChHHccchhcCCCccCccccceeccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 99999999999999998642 11 112234444458999999999999999999988877777765542
Q ss_pred ccccccccccChhhHHHHHHHHHHHHHHHHHHhhhhhcHHHH-HH----------------HHHcc---ChhH-HHHHHh
Q psy11096 308 CDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKSQQKVESIQDM-KA----------------FVENY---PQFK-MKKLLT 366 (554)
Q Consensus 308 ~~~~~~~~~~~~~el~~~v~~l~~~~~~~~~~~~~~~~i~~~-~~----------------~~~~~---~~~~-i~~ll~ 366 (554)
+...++++|+++||+++|. .++.++.-..+.+++++ .+ +++.. ..+. |+|++.
T Consensus 325 -----r~~~~sV~Eik~FV~~Lp~-L~~~~~~l~~H~~lae~i~~~v~~~~f~~~l~lE~ell~~~d~~k~~~~IeElI~ 398 (600)
T KOG1302|consen 325 -----RRQAMSVAEIKDFVSKLPK-LQQRKKSLERHTNLAEMIMQHVKNEDFRKLLKLEHELLEGNDSDKDFDYIEELIY 398 (600)
T ss_pred -----hhccCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCcccchHHHHHHHh
Confidence 3457899999999998875 45443322222233321 11 12111 1122 788885
Q ss_pred CCCCChHHHHHHHHHHHHHcCCCChhhHHHHHH-HHHHcCCCcccccHHHHHHhhcccccccccCCCCC--Ccchhhhhh
Q psy11096 367 SGKIRDVEAVRLVMLYAIRYEHHSNNDLSGLMD-ILRRIGVSESLVQMPLQVLDYSNEHSKYTHHNDSF--SATQDVMVK 443 (554)
Q Consensus 367 ~~~~~~~dklRLl~L~~l~~~g~~~~~~~~l~~-~l~~~G~~~~~~~~l~~l~~~~~~~~~~~~~~~~f--~~~~~~~~~ 443 (554)
...+....|||+||.|++.+|+++++++-+++ .++.||+ +++.++.||++.|....+-. ...+- ..+..| ..
T Consensus 399 -~~~~~~~vLRLicL~Slt~~Gl~~k~l~~~rr~~lqsYG~--ehl~tl~nL~kaGLl~~q~~-~~~~~~~~~~~~~-st 473 (600)
T KOG1302|consen 399 -QEVPLNNVLRLICLLSLTCNGLKPKDLDHYRREYLQSYGY--EHLLTLQNLEKAGLLREQTG-GRKLHTKSSKRNY-ST 473 (600)
T ss_pred -hcccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhH--HHHHHHHHHHHcCCcccccC-CCcchhhHHHHHH-HH
Confidence 58899999999999999999999999999999 7899995 69999999999998654410 00000 000011 11
Q ss_pred hhh--hhhc------ccCCcccccccCcchHHHHHHHHhcC-CCC----------CCCcccc--CCCCCCC--CCCCCCC
Q psy11096 444 KTQ--RFLK------DLKGVENVYTQHEPVLKDILDDLVKG-KLK----------DTHFPYL--DPYQGRS--EGSRWYQ 500 (554)
Q Consensus 444 ~~k--~~~~------~~~~~~~~~s~y~P~~~~ive~l~~~-~l~----------~~~~p~~--~~~~~~~--~~~~~~~ 500 (554)
.++ ++.. .+++++|+||+|+|+++||||.+++. ++. ...|... .|....+ ..++..+
T Consensus 474 ~~ntl~l~~~~~d~~~p~DiaYvySgy~PLs~rlve~~l~~~~w~~~~~~i~~l~g~~~e~~~~~~~~~~~~~~~~g~~R 553 (600)
T KOG1302|consen 474 WANTLPLVDEENDESNPSDIAYVYSGYAPLSCRLVEDLLKRRGWQELYSKIRNLPGPHFEEVTWTPSDIASKNNSPGALR 553 (600)
T ss_pred HHhcCCCcCCcccccCcccchhhhcccccHHHHHHHHHhcccchhhhHHHHccCCCCchhhcccChhhhcccccCCCCcc
Confidence 111 1221 35789999999999999999999986 221 1111111 1111111 1223578
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhccCCCCceEEEccccccChhHHHHHH
Q psy11096 501 DIIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQV 549 (554)
Q Consensus 501 ~viVFviGGvTy~E~~al~~l~~~~~~~~~~iiigsT~i~~~~~fl~~l 549 (554)
.++|||+||+||+|++|+|++++. .+++|+|+||.++||.++|+.+
T Consensus 554 ~~lVff~GG~T~~EIAalr~l~~~---~~~~f~i~Tt~ling~~ll~~~ 599 (600)
T KOG1302|consen 554 VTLVFFLGGCTYAEIAALRFLAKL---EGYRFLIATTGLINGSSLLEAI 599 (600)
T ss_pred eEEEEEECCccHHHHHHHHHHHhh---cCceEEEEeccccchHHHHHhh
Confidence 999999999999999999999998 6799999999999999999876
No 7
>PRK10039 hypothetical protein; Provisional
Probab=48.35 E-value=36 Score=29.61 Aligned_cols=44 Identities=14% Similarity=0.216 Sum_probs=29.7
Q ss_pred ECCCCHHHHHHHHHHHhccCCCC-ceE-EEccccccChhHHHHHHh
Q psy11096 507 VGGTTYEECLCVHQMNTSSGNNA-RAI-LLGATTVHNSTSFMQQVR 550 (554)
Q Consensus 507 iGGvTy~E~~al~~l~~~~~~~~-~~i-iigsT~i~~~~~fl~~l~ 550 (554)
=||.|--|.|+++|++...|..+ +.+ +...+.-++-.+.++.+.
T Consensus 80 EGGlS~VE~R~l~Ela~ga~~~~~~~v~~~~~~~pLsD~evi~~~~ 125 (127)
T PRK10039 80 EGGLSQVEERILIELAVGSTPKGYRQLYIHPQSVPLSDSAVIQIIK 125 (127)
T ss_pred CCCccHHHHHHHHHHHhhhcccccceEEEeCCCCcCCHHHHHHHHh
Confidence 49999999999999987632212 234 444444577777776654
No 8
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=39.23 E-value=56 Score=26.88 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=27.6
Q ss_pred CCCeEEEEEECC--CCHHHHHHHHHH-HhccCCCCceEEEccc
Q psy11096 498 WYQDIIVFMVGG--TTYEECLCVHQM-NTSSGNNARAILLGAT 537 (554)
Q Consensus 498 ~~~~viVFviGG--vTy~E~~al~~l-~~~~~~~~~~iiigsT 537 (554)
.-+.++|-|.|| +|+.|+..+-+. .+.. +.+.+|++|.+
T Consensus 35 ~A~~vLvni~~~~d~~l~ev~~~~~~i~~~~-~~~a~ii~G~~ 76 (95)
T PF12327_consen 35 GAKGVLVNITGGPDLSLSEVNEAMEIIREKA-DPDANIIWGAS 76 (95)
T ss_dssp G-SEEEEEEEE-TTS-HHHHHHHHHHHHHHS-STTSEEEEEEE
T ss_pred HhceEEEEEEcCCCCCHHHHHHHHHHHHHHh-hcCceEEEEEE
Confidence 347999999998 779999887654 4432 35789999976
No 9
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=38.94 E-value=34 Score=32.98 Aligned_cols=40 Identities=10% Similarity=0.341 Sum_probs=27.3
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhccCCCCceEEEccccccChhHHHH
Q psy11096 501 DIIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQ 547 (554)
Q Consensus 501 ~viVFviGGvTy~E~~al~~l~~~~~~~~~~iiigsT~i~~~~~fl~ 547 (554)
.+.|.+.||+|-..+ ..+.+. |.++++.++.+++.+++-+
T Consensus 167 ~~~I~vdGGI~~eni---~~l~~a----GAd~vVvGSaIf~~~d~~~ 206 (220)
T PRK08883 167 DIRLEIDGGVKVDNI---REIAEA----GADMFVAGSAIFGQPDYKA 206 (220)
T ss_pred CeeEEEECCCCHHHH---HHHHHc----CCCEEEEeHHHhCCCCHHH
Confidence 466888999995544 455543 6788888888986544433
No 10
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=36.09 E-value=43 Score=31.86 Aligned_cols=42 Identities=10% Similarity=0.303 Sum_probs=28.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHhccCCCCceEEEccccccChhHHHHHHh
Q psy11096 502 IIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQVR 550 (554)
Q Consensus 502 viVFviGGvTy~E~~al~~l~~~~~~~~~~iiigsT~i~~~~~fl~~l~ 550 (554)
+.|.+.||+|-..++.+.+ . +.++++.++.|++.++.-+.++
T Consensus 171 ~~i~v~GGI~~~nv~~l~~---~----GaD~vvvgSai~~~~d~~~~~~ 212 (220)
T PRK05581 171 ILIEVDGGINADNIKECAE---A----GADVFVAGSAVFGAPDYKEAID 212 (220)
T ss_pred ceEEEECCCCHHHHHHHHH---c----CCCEEEEChhhhCCCCHHHHHH
Confidence 5577889999965554443 3 6788888888997655544433
No 11
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=33.85 E-value=48 Score=31.18 Aligned_cols=44 Identities=16% Similarity=0.384 Sum_probs=31.9
Q ss_pred EEEEEECCCCHHHHHHHHHHHhccCCCCceEEEccccccChhHHHHHHhcC
Q psy11096 502 IIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQVRSH 552 (554)
Q Consensus 502 viVFviGGvTy~E~~al~~l~~~~~~~~~~iiigsT~i~~~~~fl~~l~~l 552 (554)
+-|.+.||+|-. .+.++.+ .+.+.++.++.++++.+.-+.++++
T Consensus 166 ~~i~v~GGI~~e---nv~~l~~----~gad~iivgsai~~~~d~~~~~~~~ 209 (210)
T TIGR01163 166 ILIEVDGGVNDD---NARELAE----AGADILVAGSAIFGADDYKEVIRSL 209 (210)
T ss_pred ceEEEECCcCHH---HHHHHHH----cCCCEEEEChHHhCCCCHHHHHHHh
Confidence 458899999953 3555554 3688888889999877776666654
No 12
>PLN02334 ribulose-phosphate 3-epimerase
Probab=27.04 E-value=65 Score=31.09 Aligned_cols=40 Identities=8% Similarity=0.161 Sum_probs=26.9
Q ss_pred EEEEECCCCHHHHHHHHHHHhccCCCCceEEEccccccChhHHHHHH
Q psy11096 503 IVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQV 549 (554)
Q Consensus 503 iVFviGGvTy~E~~al~~l~~~~~~~~~~iiigsT~i~~~~~fl~~l 549 (554)
-|.++||+|-.-++.+. +. |.++++.++.|++.++.-+.+
T Consensus 176 ~I~a~GGI~~e~i~~l~---~a----Gad~vvvgsai~~~~d~~~~~ 215 (229)
T PLN02334 176 DIEVDGGVGPSTIDKAA---EA----GANVIVAGSAVFGAPDYAEVI 215 (229)
T ss_pred cEEEeCCCCHHHHHHHH---Hc----CCCEEEEChHHhCCCCHHHHH
Confidence 48999999977555544 33 566777777888765544433
No 13
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=26.39 E-value=67 Score=29.52 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=27.7
Q ss_pred EEEEEECCCCHHHHHHHHHHHhccCCCCceEEEccccccChhHHHHHHhc
Q psy11096 502 IIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQVRS 551 (554)
Q Consensus 502 viVFviGGvTy~E~~al~~l~~~~~~~~~~iiigsT~i~~~~~fl~~l~~ 551 (554)
+-|++.||+|-..+. ++.+. |.+.+..++.++..++..+.+.+
T Consensus 151 ~pv~a~GGi~~~~i~---~~~~~----Ga~~i~~g~~i~~~~~~~~~~~~ 193 (196)
T cd00564 151 IPVVAIGGITPENAA---EVLAA----GADGVAVISAITGADDPAAAARE 193 (196)
T ss_pred CCEEEECCCCHHHHH---HHHHc----CCCEEEEehHhhcCCCHHHHHHH
Confidence 448999999975544 44433 56777777778765555555443
No 14
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=23.95 E-value=1e+02 Score=28.74 Aligned_cols=44 Identities=14% Similarity=0.284 Sum_probs=30.4
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhccCCCCceEEEccccccChhHHHHHHhc
Q psy11096 501 DIIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQVRS 551 (554)
Q Consensus 501 ~viVFviGGvTy~E~~al~~l~~~~~~~~~~iiigsT~i~~~~~fl~~l~~ 551 (554)
.+.|.+.||+|-. .+.++.+. |.+.++.++.|+..++.-+.+.+
T Consensus 158 ~~~i~~~GGI~~~---~i~~~~~~----Gad~vvvGsai~~~~d~~~~~~~ 201 (202)
T cd04726 158 GVKVAVAGGITPD---TLPEFKKA----GADIVIVGRAITGAADPAEAARE 201 (202)
T ss_pred CCCEEEECCcCHH---HHHHHHhc----CCCEEEEeehhcCCCCHHHHHhc
Confidence 4679999999943 45555544 68888888888877665554443
No 15
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=23.06 E-value=81 Score=29.67 Aligned_cols=37 Identities=14% Similarity=0.156 Sum_probs=24.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHhccCCCCceEEEccccccChhHH
Q psy11096 502 IIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSF 545 (554)
Q Consensus 502 viVFviGGvTy~E~~al~~l~~~~~~~~~~iiigsT~i~~~~~f 545 (554)
+-|+..||+|-..++ ++.+ .|.+.+++++.|.+.++.
T Consensus 161 ~~v~a~GGI~~~~i~---~~~~----~Ga~gv~~gs~i~~~~d~ 197 (212)
T PRK00043 161 IPIVAIGGITPENAP---EVLE----AGADGVAVVSAITGAEDP 197 (212)
T ss_pred CCEEEECCcCHHHHH---HHHH----cCCCEEEEeHHhhcCCCH
Confidence 558999999965544 4443 367777777788765443
No 16
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=21.11 E-value=1.2e+02 Score=28.29 Aligned_cols=42 Identities=14% Similarity=0.161 Sum_probs=28.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHhccCCCCceEEEccccccChhHHHHHHh
Q psy11096 502 IIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQVR 550 (554)
Q Consensus 502 viVFviGGvTy~E~~al~~l~~~~~~~~~~iiigsT~i~~~~~fl~~l~ 550 (554)
+-|+.+||+|-+.++.+ .+ .|.+.+..++.|.+.++-...++
T Consensus 153 ~pv~a~GGI~~~~~~~~---~~----~G~~gva~~~~i~~~~dp~~~~~ 194 (196)
T TIGR00693 153 IPIVAIGGITLENAAEV---LA----AGADGVAVVSAIMQAADPKAAAK 194 (196)
T ss_pred CCEEEECCcCHHHHHHH---HH----cCCCEEEEhHHhhCCCCHHHHHH
Confidence 34999999997665543 33 36778888888887665554444
No 17
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=20.91 E-value=1.1e+02 Score=28.66 Aligned_cols=44 Identities=11% Similarity=0.383 Sum_probs=30.7
Q ss_pred EEEEEECCCCHHHHHHHHHHHhccCCCCceEEEccccccChhHHHHHHhcC
Q psy11096 502 IIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQVRSH 552 (554)
Q Consensus 502 viVFviGGvTy~E~~al~~l~~~~~~~~~~iiigsT~i~~~~~fl~~l~~l 552 (554)
+-|++.||+|-.- +.++.+. +.+.++.++.+++..+.-..++++
T Consensus 167 ~pi~v~GGI~~en---v~~~~~~----gad~iivgsai~~~~~~~~~~~~~ 210 (211)
T cd00429 167 LLIEVDGGINLET---IPLLAEA----GADVLVAGSALFGSDDYAEAIKEL 210 (211)
T ss_pred eEEEEECCCCHHH---HHHHHHc----CCCEEEECHHHhCCCCHHHHHHHh
Confidence 4588999999633 4455543 677788888888877766665544
Done!