Query psy11096
Match_columns 554
No_of_seqs 174 out of 1005
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 17:52:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11096.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11096hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1epu_A S-SEC1; parallel beta-s 100.0 6.2E-96 2E-100 807.8 42.1 530 1-553 1-589 (591)
2 2xhe_A UNC18; exocytosis, exoc 100.0 1.4E-94 4.7E-99 802.3 45.4 526 1-553 2-616 (650)
3 3c98_A Syntaxin-binding protei 100.0 8.9E-95 3.1E-99 800.2 41.0 524 1-553 16-598 (606)
4 1dn1_A NSEC1, syntaxin binding 100.0 1.3E-94 4.5E-99 790.8 39.6 522 1-553 4-586 (594)
5 3puk_A Syntaxin-binding protei 100.0 2E-93 6.8E-98 781.3 37.0 514 1-553 8-581 (592)
6 1mqs_A SLY1 protein, SLY1P; SM 100.0 4.4E-91 1.5E-95 776.1 35.0 543 1-553 17-662 (671)
7 1y9j_A SEC1 family domain cont 100.0 2.8E-29 9.5E-34 225.1 10.3 127 1-131 20-159 (159)
8 2xhe_A UNC18; exocytosis, exoc 24.8 79 0.0027 34.2 5.7 45 316-360 287-338 (650)
9 1tqx_A D-ribulose-5-phosphate 19.9 53 0.0018 30.4 2.6 36 501-543 173-208 (227)
10 1h1y_A D-ribulose-5-phosphate 15.9 51 0.0017 30.3 1.5 35 502-543 174-208 (228)
No 1
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A
Probab=100.00 E-value=6.2e-96 Score=807.75 Aligned_cols=530 Identities=20% Similarity=0.341 Sum_probs=425.5
Q ss_pred CcHHHHHHHHHH-Hhhcc--CCCceEEEEEcCCCchhhhcccChhHHhhcCeEEEeecccccccccCCCCCCcEEEEEcC
Q psy11096 1 MNVVRAIKQYVI-KMTEQ--SGPGMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIALLRP 77 (554)
Q Consensus 1 m~l~~~~~~~i~-~~l~~--~~~~~KvLv~D~~~~~ils~~~~~~~L~~~gV~~v~~l~~~~~~~r~~~~~~~~iy~i~p 77 (554)
|+|++++|+.|. ++++. ..+||||||+|+.++++||+++++++|++|||++++.|++ +|+|+|+++|||||+|
T Consensus 1 ~~l~~~~~~~~~~~i~~~~~~~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~----~r~~~~~~~aIy~v~P 76 (591)
T 1epu_A 1 MALKTAVHEKIMNDVVLAVKKNAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINR----RREPLPLLEAVYLITP 76 (591)
T ss_dssp -CHHHHHHHHHHHHTHHHHCSSSCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEESSS----CCCCEEEEEEEEEECC
T ss_pred CChHHHHHHHHHHHHHHhhccCCCcEEEEEccccHHHHHHhcCHHHHHHCCCEEEeeccc----CCCCCCCCCeEEEecC
Confidence 899999999997 67753 2479999999999999999999999999999999999998 4899999999999999
Q ss_pred CHHHHHHHHHHhcC---CCCceEEEEecCCCChhhHHHHhccCccccccceeEeeceEEeccCCeEEecCCCCCCCCC--
Q psy11096 78 TKENIALLCKELKN---PKFGSYYIYFTNIIPKADIKTLAEYDEQESVREIEELYADYLPILPHFFSLNIPLCSNGHF-- 152 (554)
Q Consensus 78 t~~~i~~i~~d~~~---~~y~~~~i~f~~~~~~~~~~~l~~~~~~~~i~~i~e~~ldf~pld~~lfsl~~p~~f~~~~-- 152 (554)
+.+||++|++|+++ |+|++|||+|+|.+++.+++.|++++..+.|.+|.|+++||+|+|+|+|||++|++|..++
T Consensus 77 t~~ni~~i~~d~~~~~~~~y~~~~i~F~~~~~~~~le~la~~~~~~~i~~v~e~~ldf~ple~dlfsl~~~~~~~~~~~~ 156 (591)
T 1epu_A 77 TEESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCKSTTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNP 156 (591)
T ss_dssp CHHHHHHHHHHTSSTTSCSEEEEEEEESSCCCHHHHHHHHHSTTGGGEEEEEECCCCSEEEETTEEECCCTHHHHHHHCG
T ss_pred CHHHHHHHHHHHhhcccccCCeEEEEECCCCCHHHHHHHHhCchHhhhceeeEeccceEecCCCEEEeCCccHHHHhcCC
Confidence 99999999999986 8999999999999999999999999988899899999999999999999999999877542
Q ss_pred ----CChHHHHHHHHHHHHHHHHhCCCCeEEecCCcHHHHHHHHHHHHHHHhh---hcccCCCCCCCCcEEEEeeCCCCC
Q psy11096 153 ----WDPVHLVRSSQGLIALLLSLNKNPVIRYQASSEMTKRLAEKVKETIIKE---EKLFDMRQGDAVPVLLIIDRTCDP 225 (554)
Q Consensus 153 ----~~~~~l~~ia~~L~~l~~~~g~~P~I~~~~~~~~a~~la~~l~~~~~~~---~~~~~~~~~~~~~~LiIlDR~~Dl 225 (554)
++.+.++++|++|+++|.++|.+|.|||+|+++.|++||+.+++++.+. ...+..+..+.+++|||+||++|+
T Consensus 157 ~~~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~a~~lA~~l~~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~ 236 (591)
T 1epu_A 157 SRAQGGIPNKERCAEQIATLCATLGEYPSVRYRSDFDENASFAQLVQQKLDAYRADDPTMGEGPQKDRSQLLILDRGFDP 236 (591)
T ss_dssp GGSTTCHHHHHHHHHHHHHHHHHHTCCCEEEECTTSTHHHHHHHHHHHHHHHHHHTCTTTTCHHHHTSCEEEEEEGGGCS
T ss_pred cchhhhhHHHHHHHHHHHHHHHHcCCCCeEEecCCCcHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCceEEEECCCccc
Confidence 5678999999999999999999999999998778999999999888642 223332234578999999999999
Q ss_pred cccccchhhHHHHHHhhhccCCCeEEEcccCCCCCCcceEEccCCCChhccccccCchhhHHHHHHHHHHHHHHHHhhcc
Q psy11096 226 ITPLLSQWTYQAMLHELLTINNNRVDLSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKRHE 305 (554)
Q Consensus 226 ~TpLl~~~TYq~Ll~dl~~I~~~~v~~~~~~~~~~~~~~~~L~~~~D~~~~~~r~~~f~~v~~~i~~~~~~l~~~~~~~~ 305 (554)
+|||+||||||||+||+|||++|.|+++..++...+.+++.|+ ++|+||.++||+||++|++.|.+.+++|++..+...
T Consensus 237 vTPLlhq~TYqali~dll~I~~n~v~~~~~~~~~~~~k~~~L~-~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~ 315 (591)
T 1epu_A 237 ISPLLHELTFQAMAYDLLPIENDVYKYVNTGGNEVPEKEVLLD-EKDDLWVEMRHQHIAVVSQNVTKKLKQFADEKRMGT 315 (591)
T ss_dssp SGGGSCCCBHHHHHHHHSCCBTTEECC-----------CEECC-GGGSSHHHHTTSBHHHHHHHHHHHHHHHHHHTC---
T ss_pred hhhhhhhhhHHHHHHHHhCcCCCEEEEEecCCCCccceEEeCC-CCChHHHHHhccCHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999998654333455788997 899999999999999999999999999998765322
Q ss_pred CcccccccccccChhhHHHHHHHHHHHHHHHHH---Hhhhhhc-----H-------HHHHH-HHHccC--------hh-H
Q psy11096 306 GVCDFYSSNLFMNYGEIGQTIKLLMDDFNKRAK---SQQKVES-----I-------QDMKA-FVENYP--------QF-K 360 (554)
Q Consensus 306 ~~~~~~~~~~~~~~~el~~~v~~l~~~~~~~~~---~~~~~~~-----i-------~~~~~-~~~~~~--------~~-~ 360 (554)
. ....+++||+++|+++| +++++.. .|.++.+ + .++++ ++.... .+ .
T Consensus 316 ~-------~~~~s~~~lk~~v~~lP-~~~~~~~~l~~H~~ia~~l~~~i~~~l~~~~~~EQ~l~~g~d~~g~~~k~~~~~ 387 (591)
T 1epu_A 316 A-------ADKAGIKDLSQMLKKMP-QYQKELSKYSTHLHLAEDCMKQYQQHVDKLCKVEQDLAMGTDADGEKIRDHMRN 387 (591)
T ss_dssp ------------CCCCCHHHHHTHH-HHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSBCTTSCBCCCCHHH
T ss_pred c-------ccccCHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccchHHHH
Confidence 0 12467999999999998 5777643 3443211 1 11111 111111 11 2
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCCcccccHHHHHHhhcccccccccCCCCCCcchhh
Q psy11096 361 MKKLLTSGKIRDVEAVRLVMLYAIRYEHHSNNDLSGLMDILRRIGVSESLVQMPLQVLDYSNEHSKYTHHNDSFSATQDV 440 (554)
Q Consensus 361 i~~ll~~~~~~~~dklRLl~L~~l~~~g~~~~~~~~l~~~l~~~G~~~~~~~~l~~l~~~~~~~~~~~~~~~~f~~~~~~ 440 (554)
+.++|.+++.++.|||||+|||+++++|+++++++ ++++++|++.+++.++.+|+++|+...+.......+.. .
T Consensus 388 i~~~l~~~~~~~~dkLRLl~Ly~l~~~g~~~~~l~---~ll~~~g~~~~~~~~i~~l~~~g~~~~~~~~~~~~~~~--~- 461 (591)
T 1epu_A 388 IVPILLDQKISAYDKIRIILLYIIHKGGISEENLA---KLVQHAHIPAEEKWIINDMQNLGVPIIQDGGRRKIPQP--Y- 461 (591)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHHTCBCHHHHH---HHHHHTTCCHHHHHHHHHGGGGTCCCBSCTTSCCCCCT--T-
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHcCCCCHHHHH---HHHHhcCCCHHHHHHHHHHHHcCCccccCCcccccccc--c-
Confidence 77788788999999999999999999999987765 46789999888999999999998765441111111110 0
Q ss_pred hhhhhhhhhcccCCcccccccCcchHHHHHHHHhcCCCCCCCccccCCCCCCC----------C------C---CCCCCe
Q psy11096 441 MVKKTQRFLKDLKGVENVYTQHEPVLKDILDDLVKGKLKDTHFPYLDPYQGRS----------E------G---SRWYQD 501 (554)
Q Consensus 441 ~~~~~k~~~~~~~~~~~~~s~y~P~~~~ive~l~~~~l~~~~~p~~~~~~~~~----------~------~---~~~~~~ 501 (554)
..+.....++++.|+|+||+|+++++||.+++|+++.++||++++++..+ + + ...+++
T Consensus 462 ---~~~~~~~~~~~~~y~~s~~~Pl~~~ive~l~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 538 (591)
T 1epu_A 462 ---HTHNRKERQADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPRPSCQQPVSVRYGHWHKDKGQASYKSGPR 538 (591)
T ss_dssp ---SGGGSCCCCSCCSCGGGCCCCHHHHHHHHHHTTCSCTTTSCBTTSCC-------------------------CCCCE
T ss_pred ---cccccccCCCCccccccccchhHHHHHHHHhcCCCCcccCcccCCCCCccccCCccccccCcccCCCCccccCCCCe
Confidence 01111234567889999999999999999999999999999998753110 0 0 123567
Q ss_pred EEEEEECCCCHHHHHHHHHHHhccCCCCceEEEccccccChhHHHHHHhcCC
Q psy11096 502 IIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQVRSHK 553 (554)
Q Consensus 502 viVFviGGvTy~E~~al~~l~~~~~~~~~~iiigsT~i~~~~~fl~~l~~l~ 553 (554)
+|||||||+||+|+++||+|+++. ..+++|+||||+|+||++|+++|..||
T Consensus 539 viVF~vGG~Ty~E~~~l~~l~~~~-~~~~~viigsT~i~n~~~fl~~l~~l~ 589 (591)
T 1epu_A 539 LIIFVVGGISYSEMRSAYEVTQTA-KNNWEVILGSTHILTPEGLLRDLRKIS 589 (591)
T ss_dssp EEEEEETCBCHHHHHHHHHHHTSS-CSSCEEEEEESSBCCHHHHHHHHHTTS
T ss_pred EEEEEECCCCHHHHHHHHHHHhhc-cCCCeEEEecCCcCCHHHHHHHHHHhc
Confidence 999999999999999999999831 268999999999999999999999987
No 2
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=100.00 E-value=1.4e-94 Score=802.27 Aligned_cols=526 Identities=20% Similarity=0.338 Sum_probs=435.0
Q ss_pred CcHHHHHHHHHH-HhhccC--CCceEEEEEcCCCchhhhcccChhHHhhcCeEEEeecccccccccCCCCCCcEEEEEcC
Q psy11096 1 MNVVRAIKQYVI-KMTEQS--GPGMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIALLRP 77 (554)
Q Consensus 1 m~l~~~~~~~i~-~~l~~~--~~~~KvLv~D~~~~~ils~~~~~~~L~~~gV~~v~~l~~~~~~~r~~~~~~~~iy~i~p 77 (554)
|+|.+++|++|. ++| .. .+||||||+|+.++++||+++++++|++|||++++.|++. |+|+|+++|||||+|
T Consensus 2 ~~l~~~~r~~ll~~~l-~v~~~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~~----r~~~~~~~aIyfv~P 76 (650)
T 2xhe_A 2 MSLKSAVKTVLTNSLR-SVADGGDWKVLVVDKPALRMISECARMSEILDLGVTVVEDVSKQ----RKVLPQFHGVYFIEP 76 (650)
T ss_dssp CCHHHHHHHHHHHHHT-TCCCCSSCEEEEECHHHHHHHHTTCCHHHHHTTTEEEEEETTTC----CSCBTTSEEEEEECS
T ss_pred ccHHHHHHHHHHHHHh-ccccCCCCEEEEEccccHHHHHhhcCHHHHHhCCCEEEEeccCC----CCCCCCCCEEEEEcC
Confidence 899999999999 899 53 2699999999999999999999999999999999999994 799999999999999
Q ss_pred CHHHHHHHHHHhcC--CCCceEEEEecCCCChhhHHHHhccCccccccceeEeeceEEeccCCeEEecCCCCCCCCC---
Q psy11096 78 TKENIALLCKELKN--PKFGSYYIYFTNIIPKADIKTLAEYDEQESVREIEELYADYLPILPHFFSLNIPLCSNGHF--- 152 (554)
Q Consensus 78 t~~~i~~i~~d~~~--~~y~~~~i~f~~~~~~~~~~~l~~~~~~~~i~~i~e~~ldf~pld~~lfsl~~p~~f~~~~--- 152 (554)
+.+|+++|++|+++ ++|++|||+|+|.+++..++.+++++..+.|.+|.|+++||+|+|+|+|||++|++|..++
T Consensus 77 t~~ni~~i~~d~~~~~~~y~~~~i~F~~~~~~~~le~la~~~~~~~i~~v~e~~ldfiple~dlfsL~~~~~~~~l~~~~ 156 (650)
T 2xhe_A 77 TEENLDYVIRDFADRTPTYEAAHLFFLSPVPDALMAKLASAKAVKYVKTLKEINTLFIPKEHRVFTLNEPHGLVQYYGSR 156 (650)
T ss_dssp CHHHHHHHHHHHHSSSCSBSCEEEEESSCCCHHHHHHHHHSGGGGGEEEEEECCCCSEEEETTEEECSCTTHHHHHHSTT
T ss_pred CHHHHHHHHHHHhhcCCCcceEEEEeCCCCCHHHHHHHHhcchhhhcCEEEEEccceEeccCCEEEeCCchHHHHhcCCc
Confidence 99999999999998 8999999999999999999999998888899889999999999999999999999887543
Q ss_pred CChHHHHHHHHHHHHHHHHhCCCCeEEecCCc-HHHHHHHHHHHHHHHh-hhcccC-CCCCCCCcEEEEeeCCCCCcccc
Q psy11096 153 WDPVHLVRSSQGLIALLLSLNKNPVIRYQASS-EMTKRLAEKVKETIIK-EEKLFD-MRQGDAVPVLLIIDRTCDPITPL 229 (554)
Q Consensus 153 ~~~~~l~~ia~~L~~l~~~~g~~P~I~~~~~~-~~a~~la~~l~~~~~~-~~~~~~-~~~~~~~~~LiIlDR~~Dl~TpL 229 (554)
++.+.++++|++|+++|.++|.+|.|||+|++ ..|++||+++++.+.+ ....+. ..+...+++|||+||++|++|||
T Consensus 157 ~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~~~a~~la~~l~~~l~~~~~~~~~~~~~~~~~~~LiIlDR~~D~vTPL 236 (650)
T 2xhe_A 157 SSSYNIDHLVRRLSTLCTTMNVAPIVRYSSTSTPGTERMAMQLQKEIDMSVSQGLINAREGKLKSQFLILDRAVDLKSPL 236 (650)
T ss_dssp GGGCCHHHHHHHHHHHHHHHTCCCEEEECTTCCHHHHHHHHHHHHHHHHHHTTTSCCCCCCSSCCEEEEECGGGCSSTTT
T ss_pred cchHHHHHHHHHHHHHHHHcCCCCEEEecCCCchHHHHHHHHHHHHHHhhccCCcccCCCCCCCCEEEEEcCCcchhhhc
Confidence 56778999999999999999999999999986 6899999999988764 223332 22446689999999999999999
Q ss_pred cchhhHHHHHHhhhccCCCeEEEcccCCCC-CCcceEEccCCCChhccccccCchhhHHHHHHHHHHHHHHHHhhccCcc
Q psy11096 230 LSQWTYQAMLHELLTINNNRVDLSHVSGIS-PDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKRHEGVC 308 (554)
Q Consensus 230 l~~~TYq~Ll~dl~~I~~~~v~~~~~~~~~-~~~~~~~L~~~~D~~~~~~r~~~f~~v~~~i~~~~~~l~~~~~~~~~~~ 308 (554)
+||||||||+||+|||++|.|+++..++.+ .+.+++.|+ ++|+||.++||+||++|++.|.+.+++|+++.++..+..
T Consensus 237 lhq~TYqaLi~dll~I~~n~v~~~~~~~~~~~~~k~~~L~-~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~~~ 315 (650)
T 2xhe_A 237 VHELTYQAAAYDLLNIENDIYSYSTVDAGGREQQRQVVLG-EDDDIWLQMRHLHISEVFRKVKSSFDEFCVSARRLQGLR 315 (650)
T ss_dssp SCCCBHHHHHHHHSCCBTTEEEEEECCSSCCSEEEEEECC-TTCTTHHHHTTSBHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred cccchHHHHHHHHhcCcCCEEEEEecCCCCCccceEEeCC-CCCHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 999999999999999999999998765433 345788997 899999999999999999999999999998877654210
Q ss_pred cccccccccChhhHHHHHHHHHHHHHHHHH---Hhhhhhc---------H---HHHHH-HHHcc-C------h-h-HHHH
Q psy11096 309 DFYSSNLFMNYGEIGQTIKLLMDDFNKRAK---SQQKVES---------I---QDMKA-FVENY-P------Q-F-KMKK 363 (554)
Q Consensus 309 ~~~~~~~~~~~~el~~~v~~l~~~~~~~~~---~~~~~~~---------i---~~~~~-~~~~~-~------~-~-~i~~ 363 (554)
...+...+++||+++|+++| +|+++.. .|.++.+ + .++++ ++... . . + .|.+
T Consensus 316 --~~~~~~~s~~~lk~~V~~LP-~~~~~~~~l~~H~~ia~~l~~~i~~~l~~~~~~EQ~l~~g~d~~g~~~~~~~~~i~~ 392 (650)
T 2xhe_A 316 --DSQQGEGGAGALKQMLKDLP-QHREQMQKYSLHLDMSNAINMAFSSTIDSCTKAEQNIVTEEEQDGNKVRDFIGEVAS 392 (650)
T ss_dssp --CCCCSTTTHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHSBCSSCCBCCCHHHHHHH
T ss_pred --ccccccccHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHH
Confidence 01124568999999999998 5776543 3433211 1 11221 11111 1 1 1 2778
Q ss_pred HHhCCCCChHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCCcccccHHHHHHhhcccccccccCCCCCCcchhhhhh
Q psy11096 364 LLTSGKIRDVEAVRLVMLYAIRYEHHSNNDLSGLMDILRRIGVSESLVQMPLQVLDYSNEHSKYTHHNDSFSATQDVMVK 443 (554)
Q Consensus 364 ll~~~~~~~~dklRLl~L~~l~~~g~~~~~~~~l~~~l~~~G~~~~~~~~l~~l~~~~~~~~~~~~~~~~f~~~~~~~~~ 443 (554)
+|.+++.++.|||||+|||+++++|+++++++ ++++++|++.+++.++.||+++|+...+.. + +.+.
T Consensus 393 ll~~~~~~~~dkLRLl~Ly~l~~~g~~~~~l~---~ll~~~G~~~~~~~~i~nL~~lgl~~~~~~---~--~~~~----- 459 (650)
T 2xhe_A 393 VVVDRRVSTEDKLRCLMLCVLAKNGTSSHELN---NLLDNANIATPSRSAIYNLEMLGATVVADR---R--GRKP----- 459 (650)
T ss_dssp HHHCTTSCHHHHHHHHHHHHHHHTCBCHHHHH---HHHHHTTCCGGGGHHHHGGGGGTCCCBGGG---C--CCCC-----
T ss_pred HHhCCCCCHHHHHHHHHHHHHHhCCCCHHHHH---HHHHHcCCCHHHHHHHHHHHHhCCcccccc---c--cccc-----
Confidence 88888999999999999999999999987765 467899998899999999999987654411 0 0000
Q ss_pred hhhhhhcccCCcccccccCcchHHHHHHHHhcCCCCCCCccccCCCCCC--------------------CC---------
Q psy11096 444 KTQRFLKDLKGVENVYTQHEPVLKDILDDLVKGKLKDTHFPYLDPYQGR--------------------SE--------- 494 (554)
Q Consensus 444 ~~k~~~~~~~~~~~~~s~y~P~~~~ive~l~~~~l~~~~~p~~~~~~~~--------------------~~--------- 494 (554)
.......++.+|+|+||+|+++++||.+++++++.+.||++.++... +.
T Consensus 460 --~~~~rk~~~~~yv~s~y~Pl~~rlve~l~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~w~~~~ 537 (650)
T 2xhe_A 460 --KTMKRIERDMPYVLSRWTPIVKDLMEYIATGQLDLESYPAVRDGPSVVQPKRASKSVEEDDDGPATSARKRGNWAKNK 537 (650)
T ss_dssp --CCCCCCCCCCCSTTCCCCCHHHHHHHHHTTTCSCTTTSCBSSCGGGSCCCC---------------------------
T ss_pred --ccccccccCCcceeccchHHHHHHHHHHhcCCCCcccCceeCCCCccccccccccccccccccccccccccccccccc
Confidence 00011123348999999999999999999999999999998652100 00
Q ss_pred ------------------C-----CCCCCeEEEEEECCCCHHHHHHHHHHHhccCCCCceEEEccccccChhHHHHHHhc
Q psy11096 495 ------------------G-----SRWYQDIIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQVRS 551 (554)
Q Consensus 495 ------------------~-----~~~~~~viVFviGGvTy~E~~al~~l~~~~~~~~~~iiigsT~i~~~~~fl~~l~~ 551 (554)
+ ..+++++|||||||+||+|+|+||+|+++ .+++|+||||+|+||++||++|..
T Consensus 538 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~viVF~iGGvTysEi~al~~ls~~---~~~~viigsT~Iln~~~fl~~l~~ 614 (650)
T 2xhe_A 538 GNNRSLPSTPSGVAVSGNGAAGAAESAKPKLFVFINGTVSYNEIRCAYEVSQS---SGYEVYIGAHNIATPAEFVELVSL 614 (650)
T ss_dssp ------------------------CCCSCEEEEEEEEEECHHHHHHHHHHHTT---SSSEEEEEEEEECCHHHHHHHHHT
T ss_pred cccccccccccccccccccccccccCCCCEEEEEEECCCCHHHHHHHHHHHhc---CCCEEEEeeCCcCCHHHHHHHHHH
Confidence 0 14468899999999999999999999977 789999999999999999999998
Q ss_pred CC
Q psy11096 552 HK 553 (554)
Q Consensus 552 l~ 553 (554)
|+
T Consensus 615 l~ 616 (650)
T 2xhe_A 615 LD 616 (650)
T ss_dssp TT
T ss_pred cC
Confidence 86
No 3
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A
Probab=100.00 E-value=8.9e-95 Score=800.19 Aligned_cols=524 Identities=18% Similarity=0.345 Sum_probs=424.1
Q ss_pred CcHHHHHHHHHH-HhhccC--CCceEEEEEcCCCchhhhcccChhHHhhcCeEEEeecccccccccCCCCCCcEEEEEcC
Q psy11096 1 MNVVRAIKQYVI-KMTEQS--GPGMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIALLRP 77 (554)
Q Consensus 1 m~l~~~~~~~i~-~~l~~~--~~~~KvLv~D~~~~~ils~~~~~~~L~~~gV~~v~~l~~~~~~~r~~~~~~~~iy~i~p 77 (554)
|.|.++++++|+ ++|+.. ..+|||||+|+.+.+|||++|++++|+++||++++.|++ +|+|+|+++|||||+|
T Consensus 16 ~~l~~~~~~~~l~~~i~~v~~~~~wKvLi~D~~t~~iis~~~~~~~L~~~gVtl~~~i~~----~R~~~~~~~aIyfv~P 91 (606)
T 3c98_A 16 IGLKAVVGEKIMHDVIKKVKKKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINK----RREPLPSLEAVYLITP 91 (606)
T ss_dssp CCHHHHHHHHHHHHTHHHHCBTTBCEEEEECHHHHHHHHTTCCHHHHTTTTEEEEEETTS----CCCCBTTSCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHhccCCCCceEEEEEcCCChHHHHhhCCHHHHHHCCCeEEEeccC----CCCCCCCCCEEEEEcC
Confidence 789999998876 688753 346999999999999999999999999999999999998 4899999999999999
Q ss_pred CHHHHHHHHHHhcCC---CCceEEEEecCCCChhhHHHHhccCccccccceeEeeceEEeccCCeEEecCCCCCCCC---
Q psy11096 78 TKENIALLCKELKNP---KFGSYYIYFTNIIPKADIKTLAEYDEQESVREIEELYADYLPILPHFFSLNIPLCSNGH--- 151 (554)
Q Consensus 78 t~~~i~~i~~d~~~~---~y~~~~i~f~~~~~~~~~~~l~~~~~~~~i~~i~e~~ldf~pld~~lfsl~~p~~f~~~--- 151 (554)
|.+||++|++|+++| +|++|||+|++.+++.+++.|++++..+.|.+|.|+++||+|+|+|+|||++|++|..+
T Consensus 92 t~eni~~i~~dl~~~~~~~Y~~~~i~F~~~~~~~~le~la~~~~~~~i~~v~e~~ldf~~le~~lfsL~~~~~~~~l~~~ 171 (606)
T 3c98_A 92 SEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVKSRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSP 171 (606)
T ss_dssp CHHHHHHHHHTTTSGGGCCBSCEEEEESSCCCHHHHHHHHTSGGGGTEEEEEECCCCSEECSSSEEECCCTTHHHHHHCG
T ss_pred CHHHHHHHHHHhcchhhcccCeEEEEECCCCCHHHHHHHHhcCcccccCeEEEEecchhhcCCcEEEecCCchHHHhcCC
Confidence 999999999999864 79999999999999999999999999999999999999999999999999999988643
Q ss_pred ---CCChHHHHHHHHHHHHHHHHhCCCCeEEecCCcHHHHHHHHHHHHHHHhh---hcccCCCCCCCCcEEEEeeCCCCC
Q psy11096 152 ---FWDPVHLVRSSQGLIALLLSLNKNPVIRYQASSEMTKRLAEKVKETIIKE---EKLFDMRQGDAVPVLLIIDRTCDP 225 (554)
Q Consensus 152 ---~~~~~~l~~ia~~L~~l~~~~g~~P~I~~~~~~~~a~~la~~l~~~~~~~---~~~~~~~~~~~~~~LiIlDR~~Dl 225 (554)
.++.+.++++|++|+++|.++|.+|.|||+|++..|+.+|+++++++... ...+......++++|||+||++|+
T Consensus 172 ~~~~~~~~~l~~ia~~L~sv~~~lg~~P~Ir~~~~~~~~~~la~~~~~~l~~~~~~~~~~~~~~~~~~~~LlIlDR~~D~ 251 (606)
T 3c98_A 172 HKAQMKNPILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRGFDP 251 (606)
T ss_dssp GGTTSCHHHHHHHHHHHHHHHHHHTCCCEEEECTTSHHHHHHHHHHHHHHHHHHHHCTTTTCSTTTTSCEEEEEEGGGCS
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCCCeEEEecCchHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCceEEEeeccccc
Confidence 35678899999999999999999999999998888889999998887542 222223345678999999999999
Q ss_pred cccccchhhHHHHHHhhhccCCCeEEEcccCCCCCCcceEEccCCCChhccccccCchhhHHHHHHHHHHHHHHHHhhcc
Q psy11096 226 ITPLLSQWTYQAMLHELLTINNNRVDLSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKRHE 305 (554)
Q Consensus 226 ~TpLl~~~TYq~Ll~dl~~I~~~~v~~~~~~~~~~~~~~~~L~~~~D~~~~~~r~~~f~~v~~~i~~~~~~l~~~~~~~~ 305 (554)
+|||+||||||||+||+|||++|.|+++.......+.+++.|+ ++|+||.++||+||++|++.|.+.++++++..+...
T Consensus 252 vTPLlhq~TYqalv~dll~I~~n~v~~~~~~~~~~~~k~~~l~-~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~ 330 (606)
T 3c98_A 252 SSPVLHELTFQAMSYDLLPIENDVYKYETSGIGEARVKEVLLD-EDDDLWIALRHKHIAEVSQEVTRSLKDFSSSKRMNT 330 (606)
T ss_dssp STTTSCCCBHHHHHHHHSCCBTTEEEEEEESSSSEEEEEEECS-TTCHHHHHHTTSBHHHHHHHHHHHHHHHHHHTTC--
T ss_pred cchhcccccHHHHHHHHhCccCCeEEEecCCCCCccceEeecC-CCchhHHHHhccCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999998654333345677775 899999999999999999999999999987654322
Q ss_pred CcccccccccccChhhHHHHHHHHHHHHHHHHH---Hhhhhhc------------HHHHHHHHH-c-cCh-------h-H
Q psy11096 306 GVCDFYSSNLFMNYGEIGQTIKLLMDDFNKRAK---SQQKVES------------IQDMKAFVE-N-YPQ-------F-K 360 (554)
Q Consensus 306 ~~~~~~~~~~~~~~~el~~~v~~l~~~~~~~~~---~~~~~~~------------i~~~~~~~~-~-~~~-------~-~ 360 (554)
....+++||+++|+.+| +|+++.. .|.++.+ +.++++-+. . ..+ + .
T Consensus 331 --------~~~~s~~dlk~~v~~lP-~~~~~~~~l~~H~~ia~~l~~~~~~~l~~~~e~EQ~l~~~~d~~~~~~~~~~~~ 401 (606)
T 3c98_A 331 --------GEKTTMRDLSQMLKKMP-QYQKELSKYSTHLHLAEDCMKHYQGTVDKLCRVEQDLAMGTDAEGEKIKDPMRA 401 (606)
T ss_dssp -------------CCSCCCTTTTCG-GGHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHSBCTTSCBCSCTHHH
T ss_pred --------ccccCHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHH
Confidence 13457888999999888 4666543 3333211 111111111 0 011 1 2
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCCcccccHHHHHHhhcccccccccCCCCCCcchhh
Q psy11096 361 MKKLLTSGKIRDVEAVRLVMLYAIRYEHHSNNDLSGLMDILRRIGVSESLVQMPLQVLDYSNEHSKYTHHNDSFSATQDV 440 (554)
Q Consensus 361 i~~ll~~~~~~~~dklRLl~L~~l~~~g~~~~~~~~l~~~l~~~G~~~~~~~~l~~l~~~~~~~~~~~~~~~~f~~~~~~ 440 (554)
+.++|.++++++.|||||+|||+++++|+++++++.+ ++..|++..+..++.+|..+|+...+ .+..+....
T Consensus 402 i~~ll~~~~~~~~dkLRL~lLy~l~~~g~~~~~l~~~---~~~~~~~~~~~~~i~~l~~lg~~~~~---~~~~~~~~~-- 473 (606)
T 3c98_A 402 IVPILLDANVSTYDKIRIILLYIFLKNGITEENLNKL---IQHAQIPPEDSEIITNMAHLGVPIVT---DSTLRRRSK-- 473 (606)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHHHTTSBCHHHHHHH---HHHHTCCHHHHHHHHHGGGGTCCCBC---CCTTTCCCC--
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHhcCCCHHHHHHH---HHHcCCCHHHHHHHHHHHHhCCcccc---ccccccccc--
Confidence 7788888999999999999999999999998776655 45678888889999999999875443 111111110
Q ss_pred hhhhhhhhhcccCCcccccccCcchHHHHHHHHhcCCCCCCCccccCCCCCCC-------------------CCCCCCCe
Q psy11096 441 MVKKTQRFLKDLKGVENVYTQHEPVLKDILDDLVKGKLKDTHFPYLDPYQGRS-------------------EGSRWYQD 501 (554)
Q Consensus 441 ~~~~~k~~~~~~~~~~~~~s~y~P~~~~ive~l~~~~l~~~~~p~~~~~~~~~-------------------~~~~~~~~ 501 (554)
........+..|+|+||+|++++++|.+++|+++...||++++.+... ....++++
T Consensus 474 -----~~~~~~~~~~~~~~s~~~Pll~~lle~l~k~~L~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (606)
T 3c98_A 474 -----PERKERISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFSTTAVSARYGHWHKNKAPGEYRSGPR 548 (606)
T ss_dssp -----CCCCCCCCCCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC--------------------------CCCSE
T ss_pred -----hhhccCCcccccceecchHHHHHHHHHHHhCCCCcccCcccCCCCcccccccccccccCCccccCCCCCCCCCCE
Confidence 001123456789999999999999999999999999999997653210 01234578
Q ss_pred EEEEEECCCCHHHHHHHHHHHhccCCCCceEEEccccccChhHHHHHHhcCC
Q psy11096 502 IIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQVRSHK 553 (554)
Q Consensus 502 viVFviGGvTy~E~~al~~l~~~~~~~~~~iiigsT~i~~~~~fl~~l~~l~ 553 (554)
||||||||+||+|++++|+|+++ ..+++|+||||+|+||++||++|++||
T Consensus 549 iIVFvvGGvTy~E~~~l~~ls~~--~~~~~viiGsT~Iln~~~fl~~L~~L~ 598 (606)
T 3c98_A 549 LIIFILGGVSLNEMRCAYEVTQA--NGKWEVLIGSTHILTPQKLLDTLKKLN 598 (606)
T ss_dssp EEEEEETCEEHHHHHHHHHHHHH--HSSCEEEEEESSEECHHHHHHHHTTTT
T ss_pred EEEEEECCcCHHHHHHHHHHHHH--cCCcEEEEEeCCeeCHHHHHHHHHHhC
Confidence 99999999999999999999987 256899999999999999999999987
No 4
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A
Probab=100.00 E-value=1.3e-94 Score=790.84 Aligned_cols=522 Identities=18% Similarity=0.362 Sum_probs=422.2
Q ss_pred CcHHHHHHHHHHH-hhccC--CCceEEEEEcCCCchhhhcccChhHHhhcCeEEEeecccccccccCCCCCCcEEEEEcC
Q psy11096 1 MNVVRAIKQYVIK-MTEQS--GPGMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIALLRP 77 (554)
Q Consensus 1 m~l~~~~~~~i~~-~l~~~--~~~~KvLv~D~~~~~ils~~~~~~~L~~~gV~~v~~l~~~~~~~r~~~~~~~~iy~i~p 77 (554)
|+|.+++|++|.+ +|+.. .++|||||+|+.++++||+++++++|+++||++++.|+. +|+|+|+++|||||+|
T Consensus 4 ~~lk~~~~~~l~~~~l~~~~~~~~~KvLilD~~t~~ils~~~~~s~Ll~~gVtlve~i~~----~R~~~~~~~aIYfv~P 79 (594)
T 1dn1_A 4 IGLKAVVGEKIMHDVIKKVKKKGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINK----RREPLPSLEAVYLITP 79 (594)
T ss_dssp CCHHHHHHHHHHHHTTGGGCCTTCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTS----CCCCCTTSEEEEEECC
T ss_pred hhHHHHHHHHHHHHHHhhcccCCCCEEEEECcccHHHHHHHhCHHHHhhCCeEEEEeccc----ccCCCCCCceEEEEeC
Confidence 8999999999988 78763 578999999999999999999999999999999999987 4899999999999999
Q ss_pred CHHHHHHHHHHhcC---CCCceEEEEecCCCChhhHHHHhccCccccccceeEeeceEEeccCCeEEecCCCCCCCCC--
Q psy11096 78 TKENIALLCKELKN---PKFGSYYIYFTNIIPKADIKTLAEYDEQESVREIEELYADYLPILPHFFSLNIPLCSNGHF-- 152 (554)
Q Consensus 78 t~~~i~~i~~d~~~---~~y~~~~i~f~~~~~~~~~~~l~~~~~~~~i~~i~e~~ldf~pld~~lfsl~~p~~f~~~~-- 152 (554)
|.+||++|++|+++ ++|++|||+|+|.+++.+++.||+++..+.|.+|.|+++||+|+|+|+|||++|++|..++
T Consensus 80 t~~ni~~i~~d~~~~~~~~Y~~y~i~Ft~~~~~~~le~La~~~~~~~i~~v~e~~ldfiple~dlFsL~~p~~f~~l~~~ 159 (594)
T 1dn1_A 80 SEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVKSRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSP 159 (594)
T ss_dssp CHHHHHHHHHTTSSGGGCCCSEEEEEESSCCCHHHHHHHHHSGGGGTEEEEEECCCCSEEEETTEEECCCTTHHHHHHCG
T ss_pred CHHHHHHHHHHHhcccccccceEEEEeCCCCCHHHHHHHHhcchHhhhcchheeeeeeEEccCCEEEecCcchHHHHhCC
Confidence 99999999999986 6999999999999999999999999999999999999999999999999999999886442
Q ss_pred ----CChHHHHHHHHHHHHHHHHhCCCCeEEecCCcHHHHHHHHHHHHHHHhhhc-ccCC--CCCCCCcEEEEeeCCCCC
Q psy11096 153 ----WDPVHLVRSSQGLIALLLSLNKNPVIRYQASSEMTKRLAEKVKETIIKEEK-LFDM--RQGDAVPVLLIIDRTCDP 225 (554)
Q Consensus 153 ----~~~~~l~~ia~~L~~l~~~~g~~P~I~~~~~~~~a~~la~~l~~~~~~~~~-~~~~--~~~~~~~~LiIlDR~~Dl 225 (554)
++.+.++++|++|+++|.++|.+|.|||+|++..|+++|+++++.+.+... ...+ +....+++|||+||++|+
T Consensus 160 ~~~~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~~~~~~lA~~v~~~l~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~ 239 (594)
T 1dn1_A 160 HKAQMKNPILERLAEQIATLCATLKEYPAVRYRGEYKDNALLAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRGFDP 239 (594)
T ss_dssp GGTTSHHHHHHHHHHHHHHHHHHHTCCCEECCCTTSHHHHHHHHHHHHHHHHHHTTCTTTTCSTTGGGCEEEEEEGGGCS
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCCCEEEECCCchHHHHHHHHHHHHHHHhhccCccccCCCCCCCCeEEEEcCCccc
Confidence 456789999999999999999999999999877789999999888865321 1111 123567899999999999
Q ss_pred cccccchhhHHHHHHhhhccCCCeEEEcccCCCCCCcceEEccCCCChhccccccCchhhHHHHHHHHHHHHHHHHhhcc
Q psy11096 226 ITPLLSQWTYQAMLHELLTINNNRVDLSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKRHE 305 (554)
Q Consensus 226 ~TpLl~~~TYq~Ll~dl~~I~~~~v~~~~~~~~~~~~~~~~L~~~~D~~~~~~r~~~f~~v~~~i~~~~~~l~~~~~~~~ 305 (554)
+|||+||||||||+||+|||++|.|+++.....+.+.+++.|+ ++|+||.++||+||++|++.|.+.+++|++..+...
T Consensus 240 vTPLlhq~TYqalv~dll~I~~n~v~~~~~~~~~~~~k~~~L~-~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~ 318 (594)
T 1dn1_A 240 SSPVLHELTFQAMSYDLLPIENDVYKYETSGIGEARVKEVLLD-EDDDLWIALRHKHIAEVSQEVTRSLKDFSSSKRMNT 318 (594)
T ss_dssp STTTSCCCBHHHHHHHHSCCBTTEEEEEECSSSSCEEEEEECS-TTCHHHHHHTTSBHHHHHHHHHHHHHHHHHHTTC--
T ss_pred cccccccccHHHHHHHHhcccCCEEEecCCCCCCccceEEecC-CCCHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999998743223345778886 799999999999999999999999999998754321
Q ss_pred CcccccccccccChhhHHHHHHHHHHHHHHHHH---Hhhhhhc---------H---HHHHH-HHHcc-C-------hh-H
Q psy11096 306 GVCDFYSSNLFMNYGEIGQTIKLLMDDFNKRAK---SQQKVES---------I---QDMKA-FVENY-P-------QF-K 360 (554)
Q Consensus 306 ~~~~~~~~~~~~~~~el~~~v~~l~~~~~~~~~---~~~~~~~---------i---~~~~~-~~~~~-~-------~~-~ 360 (554)
....+++||+++|+.+| +|+++.. .|.++.+ + .++++ ++... . .+ .
T Consensus 319 --------~~~~s~~dl~~~v~~lP-~~~~~~~~l~~H~~ia~~l~~~~~~~l~~~~e~EQ~l~~g~d~~~~~~k~~~~~ 389 (594)
T 1dn1_A 319 --------GEKTTMRDLSQMLKKMP-QYQKELSKYSTHLHLAEDCMKHYQGTVDKLCRVEQDLAMGTDAEGEKIKDPMRA 389 (594)
T ss_dssp -------------CCSSCCTTTTCG-GGHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHSBCSSCCBCCCTHHH
T ss_pred --------cccCCHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccchhHHHHHH
Confidence 13457888999999887 4666543 3433211 1 11111 11111 1 11 2
Q ss_pred HHHHHhCCCCChHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCCcccccHHHHHHhhcccccccccCCCCCCcchhh
Q psy11096 361 MKKLLTSGKIRDVEAVRLVMLYAIRYEHHSNNDLSGLMDILRRIGVSESLVQMPLQVLDYSNEHSKYTHHNDSFSATQDV 440 (554)
Q Consensus 361 i~~ll~~~~~~~~dklRLl~L~~l~~~g~~~~~~~~l~~~l~~~G~~~~~~~~l~~l~~~~~~~~~~~~~~~~f~~~~~~ 440 (554)
|.++|.+++++++|||||+|||+++++|++++++++| ++++|++.+++.++.||+++|....+. . ..
T Consensus 390 i~~lL~~~~~~~~dkLRL~~Ly~l~~~g~~~~~~~~L---~~~~~~~~~~~~~i~nl~~lG~~~~~~---~----~~--- 456 (594)
T 1dn1_A 390 IVPILLDANVSTYDKIRIILLYIFLKNGITEENLNKL---IQHAQIPPEDSEIITNMAHLGVPIVTD---S----TL--- 456 (594)
T ss_dssp HHHHHHCTTSCHHHHHHHHHHHHHHTTCBCHHHHHHH---HHHHTCCHHHHHHHHHGGGGTCCCBCC---C----GG---
T ss_pred HHHHHhCCCCChHhHHHHHHHHHHHcCCCCHHHHHHH---HHHcCCCHHHHHHHHHHHHhCCccccc---c----cc---
Confidence 6788888899999999999999999999998777766 468899989999999999998754331 0 00
Q ss_pred hhhhhhhhhcccCCccccc--ccCcchHHHHHHHHhcCCCCCCCccccCCCCC----------CCC--------C-CCCC
Q psy11096 441 MVKKTQRFLKDLKGVENVY--TQHEPVLKDILDDLVKGKLKDTHFPYLDPYQG----------RSE--------G-SRWY 499 (554)
Q Consensus 441 ~~~~~k~~~~~~~~~~~~~--s~y~P~~~~ive~l~~~~l~~~~~p~~~~~~~----------~~~--------~-~~~~ 499 (554)
++.++..+...+++++| |||+|.+++++|++++|+|+++.|||+.+.+. |.+ . ....
T Consensus 457 --~k~~~~~~k~~~~e~~Y~lsr~~P~l~~ile~~~~~~L~~~~fP~~~~~~~~~~~~~~~s~r~~~w~~~~~~~~~~~~ 534 (594)
T 1dn1_A 457 --RRRSKPERKERISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFSTTAVSARYGHWHKNKAPGEYRSG 534 (594)
T ss_dssp --GCCCCCCCCCCCCSCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC--------------------------CCC
T ss_pred --ccccccccccCCCCccceeeccchHHHHHHHHHHhCCCCcccCCccCCCCCccccccccccccccccccCCccccccC
Confidence 01111122223456666 69999999999999999999999999965421 110 0 1235
Q ss_pred CeEEEEEECCCCHHHHHHHHHHHhccCCCCceEEEccccccChhHHHHHHhcCC
Q psy11096 500 QDIIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQVRSHK 553 (554)
Q Consensus 500 ~~viVFviGGvTy~E~~al~~l~~~~~~~~~~iiigsT~i~~~~~fl~~l~~l~ 553 (554)
+++|||||||+||+|+|++|++++. ..+++|++|||+|+||.+|+++|..|.
T Consensus 535 ~riivFivGG~Ty~E~r~~~els~~--~~~~~VilG~t~il~p~~Fl~~l~~l~ 586 (594)
T 1dn1_A 535 PRLIIFILGGVSLNEMRCAYEVTQA--NGKWEVLIGSTHILTPQKLLDTLKKLN 586 (594)
T ss_dssp CEEEEEEETCEEHHHHHHHHHHHHH--HSSCEEEEEESSEECHHHHHHHHTTTT
T ss_pred CcEEEEEeCCccHHHHHHHHHHHhh--cCCceEEEeeCCcCCHHHHHHHHHHhC
Confidence 7899999999999999999999987 246999999999999999999998874
No 5
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A
Probab=100.00 E-value=2e-93 Score=781.26 Aligned_cols=514 Identities=19% Similarity=0.363 Sum_probs=410.1
Q ss_pred CcHHHHHHHHHHH-hhccC--CCceEEEEEcCCCchhhhcccChhHHhhcCeEEEeecccccccccCCCCCCcEEEEEcC
Q psy11096 1 MNVVRAIKQYVIK-MTEQS--GPGMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIALLRP 77 (554)
Q Consensus 1 m~l~~~~~~~i~~-~l~~~--~~~~KvLv~D~~~~~ils~~~~~~~L~~~gV~~v~~l~~~~~~~r~~~~~~~~iy~i~p 77 (554)
|+|.+++|++|.+ +|+.. .++|||||+|+.++++||+++++++|+++||++++.|+. +|+|+|+++|||||+|
T Consensus 8 ~~lk~~~~~~l~~~~l~~v~~~~~~KvLvlD~~t~~ils~~~~~sdLl~~gVtlve~i~~----~R~~~~~~~aIYfv~P 83 (592)
T 3puk_A 8 RGLKSVVWRKIKTAVFDDCRKEGEWKIMLLDEFTTKLLSSCCKMTDLLEEGITVIENIYK----NREPVRQMKALYFISP 83 (592)
T ss_dssp CCHHHHHHHHHHHHTTGGGCCTTCCEEEEECHHHHHHHHHSSCTTGGGGGTEEEEEESSS----CCCCBTTSCEEEEECS
T ss_pred hhHHHHHHHHHHHHHHHhhcccCCCEEEEECCccHHHHHHHhcHHHHHhCCcEEEeeccC----ccCCCCCCcEEEEEeC
Confidence 7999999999987 88863 478999999999999999999999999999999999987 4899999999999999
Q ss_pred CHHHHHHHHHHhcCC---CCceEEEEecCCCChhhHHHHhccCccccccceeEeeceEEeccCCeEEecCCCCCCCCCC-
Q psy11096 78 TKENIALLCKELKNP---KFGSYYIYFTNIIPKADIKTLAEYDEQESVREIEELYADYLPILPHFFSLNIPLCSNGHFW- 153 (554)
Q Consensus 78 t~~~i~~i~~d~~~~---~y~~~~i~f~~~~~~~~~~~l~~~~~~~~i~~i~e~~ldf~pld~~lfsl~~p~~f~~~~~- 153 (554)
|.+||++|++|++++ +|++|||+|+|.+++.+++.| ++++.+.|.+|.|+++||+|+|+++|||++|++|..++.
T Consensus 84 t~eni~~i~~dl~~~~~~~Y~~~~i~F~~~~~~~lle~L-~~~~~~~I~~v~e~~ldfiple~~lFsL~~p~~~~~l~~~ 162 (592)
T 3puk_A 84 TPKSVDCFLRDFGSKSEKKYKAAYIYFTDFCPDSLFNKI-KASCSKSIRRCKEINISFIPQESQVYTLDVPDAFYYCYSP 162 (592)
T ss_dssp CHHHHHHHHHHHTGGGCCCBSCEEEEESSCCCHHHHHHH-HHSCCSSEEEEEECCCCEEEEETTEEEECCTTHHHHHSCC
T ss_pred CHHHHHHHHHHHhccccccCCeEEEEECCCCCHHHHHHH-HhhHHhhcCEEEEEeeeeEeccCCEEEecCCchHHHHcCC
Confidence 999999999999875 899999999999999999999 778899998999999999999999999999998865432
Q ss_pred -------ChHHHHHHHHHHHHHHHHhCCCCeEEecCCcH-HHHHHHHHHHHHHHhhhcc--cCCCCCCCCcEEEEeeCCC
Q psy11096 154 -------DPVHLVRSSQGLIALLLSLNKNPVIRYQASSE-MTKRLAEKVKETIIKEEKL--FDMRQGDAVPVLLIIDRTC 223 (554)
Q Consensus 154 -------~~~~l~~ia~~L~~l~~~~g~~P~I~~~~~~~-~a~~la~~l~~~~~~~~~~--~~~~~~~~~~~LiIlDR~~ 223 (554)
+.+.++++|++|+++|.++|.+|.|||+|++. .|++||+++++.+.++... ..++..+++++|||+||++
T Consensus 163 ~~~~~~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~~~~a~~lA~~l~~~l~~~~~~~~~~~~~~~~~~~LiIlDR~~ 242 (592)
T 3puk_A 163 DPSNASRKEVVMEAMAEQIVTVCATLDENPGVRYKSKPLDNASKLAQLVEKKLEDYYKIDEKGLIKGKTQSQLLIIDRGF 242 (592)
T ss_dssp SSSTTHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCSSSSHHHHHHHHHHHHHHHSSSSCSSCSCCSCCSEEEEEEEGGG
T ss_pred cccccccchHHHHHHHHHHHHHHHhcCCCCeEEECCCchHHHHHHHHHHHHHHHHHHhccCCCcCCCCCCceEEEecCCc
Confidence 45789999999999999999999999999753 4779999999888752111 1222336789999999999
Q ss_pred CCcccccchhhHHHHHHhhhccCCCeEEEcccCCCCCCcceEEccCCCChhccccccCchhhHHHHHHHHHHHHHHHHhh
Q psy11096 224 DPITPLLSQWTYQAMLHELLTINNNRVDLSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKR 303 (554)
Q Consensus 224 Dl~TpLl~~~TYq~Ll~dl~~I~~~~v~~~~~~~~~~~~~~~~L~~~~D~~~~~~r~~~f~~v~~~i~~~~~~l~~~~~~ 303 (554)
|++|||+||||||||+||+|||++|.|+++.. | +.+++.|+ ++|+||.++||+||++|++.|.+.+++|++..+.
T Consensus 243 D~vtPLlh~~TYqalv~dll~i~~~~v~~~~~-g---~~k~~~L~-~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~ 317 (592)
T 3puk_A 243 DPVSTVLHELTFQAMAYDLLPIENDTYKYKTD-G---KEKEAVLE-EDDDLWVRVRHRHIAVVLEEIPKLMKEISSTKKA 317 (592)
T ss_dssp CSSTTTSCCCBHHHHHHHHSCCGGGEEECCSS-S---SCCEEECS-TTSSSTTTTTTSBHHHHHTTSCSCSTTTTTCC--
T ss_pred cccccccccccHHHHHHHHhcccCCEEEecCC-C---ceeEEecC-CCCHHHHHHhccCHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999862 2 45788896 8999999999999999999987776666544322
Q ss_pred ccCcccccccccccChhhHHHHHHHHHHHHHHHHH---Hhhhhhc---------H---HHHHHHHH-cc-Ch-------h
Q psy11096 304 HEGVCDFYSSNLFMNYGEIGQTIKLLMDDFNKRAK---SQQKVES---------I---QDMKAFVE-NY-PQ-------F 359 (554)
Q Consensus 304 ~~~~~~~~~~~~~~~~~el~~~v~~l~~~~~~~~~---~~~~~~~---------i---~~~~~~~~-~~-~~-------~ 359 (554)
. ....+++||+++|+.+| +++++.. .|.++.+ + .++++-+. .. .+ +
T Consensus 318 ~---------~~~~s~~dl~~~v~~lp-~~~~~~~~l~~H~~ia~~l~~~~~~~l~~~~e~EQ~l~~g~d~~~~~~k~~~ 387 (592)
T 3puk_A 318 T---------EGKTSLSALTQLMKKMP-HFRKQISKQVVHLNLAEDCMNKFKLNIEKLCKTEQDLALGTDAEGQRVKDSM 387 (592)
T ss_dssp --------------CCTTHHHHHHHHH-HTTTHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHSSSCTTCCSCSCCH
T ss_pred c---------cCCCCHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccchhhHHHH
Confidence 1 13468999999999998 5666543 3433211 1 11111111 11 11 1
Q ss_pred -HHHHHHhCCCCChHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHcCCCcccccHHHHHHhhcccccccccCCCCCCcch
Q psy11096 360 -KMKKLLTSGKIRDVEAVRLVMLYAIRYEHHSNNDLSGLMDILRRIGVSESLVQMPLQVLDYSNEHSKYTHHNDSFSATQ 438 (554)
Q Consensus 360 -~i~~ll~~~~~~~~dklRLl~L~~l~~~g~~~~~~~~l~~~l~~~G~~~~~~~~l~~l~~~~~~~~~~~~~~~~f~~~~ 438 (554)
.|.++|.+++++.+|||||+|||+++++|+++++++.| ++++|++. +..++.||..+|....+. .+..+.
T Consensus 388 ~~i~~~L~~~~~~~~dkLRL~lLy~L~~~g~~~~~~~~L---l~~~g~~~-~~~~i~nl~~lg~~~~~~-----~~~~~~ 458 (592)
T 3puk_A 388 LVLLPVLLNKNHDNCDKIRAVLLYIFGINGTTEENLDRL---IHNVKIED-DSDMIRNWSHLGVPIVPP-----SQQAKP 458 (592)
T ss_dssp HHHTTTTTSCSCCHHHHHHHHHHHHHHSCBCCHHHHHHH---HHHTCCCT-TTHHHHGGGGGTCCSSSS-----BSSCCC
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHH---HHHcCCCh-HHHHHHHHHHhCCccccC-----ccccCc
Confidence 14567778889999999999999999999998777665 56899987 889999999998754331 111100
Q ss_pred hhhhhhhhhhhcccCCcccccccCcchHHHHHHHHhcCCCCCCCccccCCCCC----------CCC--------CCCCCC
Q psy11096 439 DVMVKKTQRFLKDLKGVENVYTQHEPVLKDILDDLVKGKLKDTHFPYLDPYQG----------RSE--------GSRWYQ 500 (554)
Q Consensus 439 ~~~~~~~k~~~~~~~~~~~~~s~y~P~~~~ive~l~~~~l~~~~~p~~~~~~~----------~~~--------~~~~~~ 500 (554)
. ++ ....+..|.+|||+|++++++|++++|+|+++.|||+.+.+. |.+ ...+++
T Consensus 459 ---~---rk--~~~~e~~Y~~Sr~~P~l~~ile~~~~g~L~~~~fP~~~~~~~~~~~~~~~s~r~~~w~~~~~~~~~~~~ 530 (592)
T 3puk_A 459 ---L---RK--DRSAEETFQLSRWTPFIKDIMEDAIDNRLDSKEWPYCSRCPAVWNGSGAVSARQKPRTNYLELDRKNGS 530 (592)
T ss_dssp ---C---CC--CCCCCCGGGSCCCCCTTHHHHHHHHTCCCCTTTSCC--------------------CCCCCCCCCSCCS
T ss_pred ---c---cc--cCCCCcceeeeccchHHHHHHHHHHhCCCCcccCCccCCCCCCccCCccccccccccccCccccccCCC
Confidence 0 10 011234456679999999999999999999999999965421 100 012357
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhccCCCCceEEEccccccChhHHHHHHhcCC
Q psy11096 501 DIIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQVRSHK 553 (554)
Q Consensus 501 ~viVFviGGvTy~E~~al~~l~~~~~~~~~~iiigsT~i~~~~~fl~~l~~l~ 553 (554)
+||||||||+||+|+|++|++++. ..+++|+||||+|+||++|+++|+.|+
T Consensus 531 riiVFivGGvTysE~r~~~els~~--~~~~~vilG~T~i~np~~fl~~l~~l~ 581 (592)
T 3puk_A 531 RLIIFVIGGITYSEMRCAYEVSQA--HKSCEVIIGSTHILTPRKLLDDIKMLN 581 (592)
T ss_dssp EEEEEEETCEEHHHHHHHHHHHHH--CCSSEEEEEESSEECHHHHHHHHSSTT
T ss_pred eEEEEEeCCcCHHHHHHHHHHHhh--cCCceEEEeeCCcCCHHHHHHHHHHhC
Confidence 899999999999999999999987 346999999999999999999998874
No 6
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1
Probab=100.00 E-value=4.4e-91 Score=776.09 Aligned_cols=543 Identities=18% Similarity=0.316 Sum_probs=415.9
Q ss_pred CcHHHHHHHHHHHhhccC--------------------CCceEEEEEcCCCchhhhcccChhHHhhcCeEEEeecccccc
Q psy11096 1 MNVVRAIKQYVIKMTEQS--------------------GPGMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQ 60 (554)
Q Consensus 1 m~l~~~~~~~i~~~l~~~--------------------~~~~KvLv~D~~~~~ils~~~~~~~L~~~gV~~v~~l~~~~~ 60 (554)
+||.+.|+++|.+||... .++|||||+|+.++++||++|++++|++|||++++.|++.
T Consensus 17 ~~lr~~q~~~l~~ml~~~~~~~~~~~~~~~~~~~~~~~~~~~KvLVlD~~~~~ils~~~~~s~L~~~gVtlv~~l~~~-- 94 (671)
T 1mqs_A 17 ISLRDMQISAILKMLFLNKDLNNNDNITTITDDIFNQQEIIWKVLILDIKSTATISSVLRVNDLLKAGITVHSLIKQD-- 94 (671)
T ss_dssp CCHHHHHHHHHHHHHTTTTTTTSCCCCSSCCHHHHHHHCCCCEEEEECHHHHHHHTTTCCHHHHHHTTEEEEEETTSC--
T ss_pred ccHHHHHHHHHHHHHccCCCCcccccccccccccccccCCCCEEEEEccccHHHHHHhcCHHHHHhCCCeEEeeccCC--
Confidence 489999999999999632 3679999999999999999999999999999999999994
Q ss_pred cccCCCCCCcEEEEEcCCHHHHHHHHHHhcCCCCceEEEEecCCCChhhHHHHhc----cCccccccceeEeeceEEecc
Q psy11096 61 CDYENMKHLKCIALLRPTKENIALLCKELKNPKFGSYYIYFTNIIPKADIKTLAE----YDEQESVREIEELYADYLPIL 136 (554)
Q Consensus 61 ~~r~~~~~~~~iy~i~pt~~~i~~i~~d~~~~~y~~~~i~f~~~~~~~~~~~l~~----~~~~~~i~~i~e~~ldf~pld 136 (554)
|+|+|+++|||||+|+.+||++|++|+++++|++|||+|++.+++.+++.|++ ++..+.|.+|.|+++||+|+|
T Consensus 95 --r~~~~~~~aIYfv~Pt~~ni~~i~~d~~~~~Y~~~~i~F~~~~~~~lle~la~~~~~~~~~~~i~~v~e~~ldfiple 172 (671)
T 1mqs_A 95 --RSPLPDVPAIYFVSPTKENIDIIVNDLKSDKYSEFYINFTSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYLDFIVTE 172 (671)
T ss_dssp --CCCEEEEEEEEEECSCHHHHHHHHHHHHHTCEEEEEEEESSCCCHHHHHHHHHHHHTSTTGGGEEEEEECCCCSEECS
T ss_pred --CCCCCCceEEEEeCCCHHHHHHHHHHhhhcccceEEEEecCCCCHHHHHHHHhhhhhcchhhhcCEEEEEccceeecc
Confidence 79999999999999999999999999999999999999999999999999997 678889988999999999999
Q ss_pred CCeEEecCCCCCCCCC----CCh---HHHHHHHHHHHHHHHHhCCCCeEEecCCcHHHHHHHHHHHHHHHhh-----hcc
Q psy11096 137 PHFFSLNIPLCSNGHF----WDP---VHLVRSSQGLIALLLSLNKNPVIRYQASSEMTKRLAEKVKETIIKE-----EKL 204 (554)
Q Consensus 137 ~~lfsl~~p~~f~~~~----~~~---~~l~~ia~~L~~l~~~~g~~P~I~~~~~~~~a~~la~~l~~~~~~~-----~~~ 204 (554)
+|+|||++|++|..++ ++. +.++++|++|+++|.++|.+|.|||..++ .|++||++|.+++.+. .++
T Consensus 173 ~dlfsL~~p~s~~~l~~~~~~d~~~~~~l~~ia~~L~sl~~~lg~~P~IRy~~g~-~a~~va~~L~~~l~~~~~~~~~~l 251 (671)
T 1mqs_A 173 PELFSLEISNAYLTLNDPKTTEEEITGLCANIADGLFNTVLTINSIPIIRAAKGG-PAEIIAEKLGTKLRDFVINTNSSS 251 (671)
T ss_dssp TTEEECCCCSHHHHHHCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCCEEEECSSS-HHHHHHHHHHHHHHHHHHTTCC--
T ss_pred CCEEEecCchHHHHhcCCCccchhHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCC-hHHHHHHHHHHHHHHHHhhccccc
Confidence 9999999999886543 243 68999999999999999999999988775 8999999999888653 123
Q ss_pred cCCC---CCCCCcEEEEeeCCCCCcccccchhhHHHHHHhhhccCCCeEEEcccCCCC---------CCcceEEccCCCC
Q psy11096 205 FDMR---QGDAVPVLLIIDRTCDPITPLLSQWTYQAMLHELLTINNNRVDLSHVSGIS---------PDLKQVVVSYEHD 272 (554)
Q Consensus 205 ~~~~---~~~~~~~LiIlDR~~Dl~TpLl~~~TYq~Ll~dl~~I~~~~v~~~~~~~~~---------~~~~~~~L~~~~D 272 (554)
|+.. ....+++|||+||++|++|||+||||||||+||+|||++|.|+++...+.+ .+.+++.|+ ++|
T Consensus 252 f~~~~~~~~~~~~~LiIlDR~~DlvTPLlhq~TYqaLi~Dll~I~~n~v~~~~~~~~~~~~~~~~~~~~~k~~~L~-~~D 330 (671)
T 1mqs_A 252 TSTLQGNDSLERGVLIILDRNIDFASMFSHSWIYQCMVFDIFKLSRNTVTIPLESKENGTDNTTAKPLATKKYDIE-PND 330 (671)
T ss_dssp ----------CCCEEEEEEGGGCSHHHHCCCCBHHHHHHHHTTCCSSCEEECC---------------CCEEECCC-SSC
T ss_pred cccccCCCCCCCCEEEEecCCccchhhhcccchHHHHHHHHhhccCCEEEEeccCCCccccccccccccceEEecC-CCC
Confidence 4321 235689999999999999999999999999999999999999998643221 345788897 699
Q ss_pred hhccccccCchhhHHHHHHHHHHHHHHHHhhcc---Cccccc--ccccccChhhHHHHHHHHHHHHHHHHHHhhhhhcHH
Q psy11096 273 DFYSSNLFMNYGEIGQTIKLLMDDFNKRAKRHE---GVCDFY--SSNLFMNYGEIGQTIKLLMDDFNKRAKSQQKVESIQ 347 (554)
Q Consensus 273 ~~~~~~r~~~f~~v~~~i~~~~~~l~~~~~~~~---~~~~~~--~~~~~~~~~el~~~v~~l~~~~~~~~~~~~~~~~i~ 347 (554)
+||.++||+||++|++.|.+.+++|+++.++.. +..+.. +.+...+++||+++|+++| +|+++...-..|.+++
T Consensus 331 ~~w~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lk~~V~~LP-~~~~~~~~l~~H~~ia 409 (671)
T 1mqs_A 331 FFWMENSHLPFPEAAENVEAALNTYKEEAAEITRKTGVTNISDLDPNSNNDTVQIQEVVKKLP-ELTAKKNTIDTHMNIF 409 (671)
T ss_dssp TTHHHHSSSBHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCCSCH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhcccCccCcccccccccccHHHHHHHHHHhH-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998876432 211111 1223467999999999988 5777544322233332
Q ss_pred -HHHHHHH------------cc-Ch--h-HHHHHHhCCC-CChHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHcCCCc
Q psy11096 348 -DMKAFVE------------NY-PQ--F-KMKKLLTSGK-IRDVEAVRLVMLYAIRYE-HHSNNDLSGLMDILRRIGVSE 408 (554)
Q Consensus 348 -~~~~~~~------------~~-~~--~-~i~~ll~~~~-~~~~dklRLl~L~~l~~~-g~~~~~~~~l~~~l~~~G~~~ 408 (554)
++.+.++ ++ .. . .|.++|.+++ .++.|||||+|||+++++ |+++++++.|++.++++|++.
T Consensus 410 ~~l~~~i~~~~l~~~~e~EQ~l~~~~~~~~i~~ll~~~~~~~~~dkLRLl~Ly~l~~~~g~~~~~~~~l~~~l~~~G~~~ 489 (671)
T 1mqs_A 410 AALLSQLESKSLDTFFEVEQDPGSTKTRSRFLDILKDGKTNNLEDKLRSFIVLYLTSTTGLPKDFVQNVENYFKENDYDI 489 (671)
T ss_dssp HHHHHHHHTTTCHHHHHHTSCCSSHHHHHHHHHHTTSCCSTTHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHhHhhHHHHHHHHHHHhcCchHHHHHHHHhCcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCH
Confidence 2222221 11 11 1 2788997754 599999999999999999 999999999999889999976
Q ss_pred ccccHHHHHHhhcccc-----cc-------ccc-CCCCCCcchhhhhhhhhhhhc-c----cCCcccccc-cCcchHHHH
Q psy11096 409 SLVQMPLQVLDYSNEH-----SK-------YTH-HNDSFSATQDVMVKKTQRFLK-D----LKGVENVYT-QHEPVLKDI 469 (554)
Q Consensus 409 ~~~~~l~~l~~~~~~~-----~~-------~~~-~~~~f~~~~~~~~~~~k~~~~-~----~~~~~~~~s-~y~P~~~~i 469 (554)
..+.+++++..++... .. ... ++++|+.. ..+.++++.+ + ..++++.|+ .+.|+++++
T Consensus 490 ~~~~~l~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~dl~~~~---~~r~~~~~~~~g~~~~~~~v~n~~P~~~~~~l~~i 566 (671)
T 1mqs_A 490 NALKYVYKLREFMQLSNMSLQNKSLEDGSDSAFKPSNLTLSG---IYGLTEGKLQGGVGSLISGIKKLLPEKKTIPITNV 566 (671)
T ss_dssp THHHHHHHHHHHHHHHHHHSCCCCC---------------------CHHHHHTTTSSCSSSHHHHHHTCCCCCCCHHHHH
T ss_pred HHHHHHHHHHHHhccccccccccccccccccccccccccccc---HHHHHHHHhccchhhHHHhHHhhCCCcccchHHHH
Confidence 6667777776654321 00 000 23445432 1223333332 2 234677885 688999999
Q ss_pred HHHHhcC-----C--CCCCCccccCCCCCCC-----CCCCCCCeEEEEEECCCCHHHHHHHHHHHhccCCCCceEEEccc
Q psy11096 470 LDDLVKG-----K--LKDTHFPYLDPYQGRS-----EGSRWYQDIIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGAT 537 (554)
Q Consensus 470 ve~l~~~-----~--l~~~~~p~~~~~~~~~-----~~~~~~~~viVFviGGvTy~E~~al~~l~~~~~~~~~~iiigsT 537 (554)
||++++| + ++.++|||++|+..++ ....+++++|||||||+||+|+++||+|+++.+..+++|+||||
T Consensus 567 ve~l~~~~~~~~k~~l~~~~y~~~~p~~~~~~~~~~~~~~~~~~viVFvVGG~Ty~E~~~l~~l~~~~~~~~~~viiGsT 646 (671)
T 1mqs_A 567 VDAIMDPLNSSQKNLETTDSYLYIDPKITRGSHTRKPKRQSYNKSLVFVVGGGNYLEYQNLQEWAHSQLHNPKKVMYGST 646 (671)
T ss_dssp HHHHHCSTTSCHHHHHHHTTSEEECTTSSSCSSSCCCCCCCCSEEEEEEETCBCHHHHHHHHHHHTTCCSSCCEEEEEES
T ss_pred HHHHHhccccccccCCCccCceeeCCCCcCCCCCCCcccCCCCeEEEEEECCccHHHHHHHHHHHhhccCCCceEEEeec
Confidence 9999998 3 5678999998764322 12346799999999999999999999999872113799999999
Q ss_pred cccChhHHHHHHhcCC
Q psy11096 538 TVHNSTSFMQQVRSHK 553 (554)
Q Consensus 538 ~i~~~~~fl~~l~~l~ 553 (554)
+|+||++|+++|..||
T Consensus 647 ~I~n~~~Fl~~l~~l~ 662 (671)
T 1mqs_A 647 AITTPAEFLNEISRLG 662 (671)
T ss_dssp SBCCHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHhC
Confidence 9999999999998775
No 7
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus}
Probab=99.96 E-value=2.8e-29 Score=225.11 Aligned_cols=127 Identities=20% Similarity=0.414 Sum_probs=119.5
Q ss_pred CcHHHHHHHHHHHhhccC---------CCceEEEEEcCCCchhhhcccChhHHhhcCeEEEeecccccccccCCCCCCcE
Q psy11096 1 MNVVRAIKQYVIKMTEQS---------GPGMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKC 71 (554)
Q Consensus 1 m~l~~~~~~~i~~~l~~~---------~~~~KvLv~D~~~~~ils~~~~~~~L~~~gV~~v~~l~~~~~~~r~~~~~~~~ 71 (554)
++|.++|+++|.+||+.. .++|||||+|+.++++||+++++++|+++||++++.|++ +|+|+|+++|
T Consensus 20 ~sLr~~qr~~l~~mL~~~~~~~~~~~~~~~wKVLVlD~~t~~iiS~~~~~sdLl~~gVtlve~i~~----~R~p~~~~~a 95 (159)
T 1y9j_A 20 ASIRERQTVALKRMLNFNVPHVKNSPGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHS----DRDPIRDVPA 95 (159)
T ss_dssp CHHHHHHHHHHHHHTTCCCSCCCSSSSCCCCEEEEECHHHHHHHTTTCCHHHHHHHTEEEEEETTS----CCCCBTTSCC
T ss_pred HHHHHHHHHHHHHHHhccCCcccccccCCCcEEEEEecccHHHHHHHhCHHHHHhCCcEEEeeccC----CCCCCCCCCE
Confidence 389999999999999852 378999999999999999999999999999999999999 4899999999
Q ss_pred EEEEcCCHHHHHHHHHHhcCCCCceEEEEecCCCChhhHHHHhc----cCccccccceeEeece
Q psy11096 72 IALLRPTKENIALLCKELKNPKFGSYYIYFTNIIPKADIKTLAE----YDEQESVREIEELYAD 131 (554)
Q Consensus 72 iy~i~pt~~~i~~i~~d~~~~~y~~~~i~f~~~~~~~~~~~l~~----~~~~~~i~~i~e~~ld 131 (554)
||||+||.+||++|++|+++++|++|||+|++.+++..++.||+ ++..+.|.+|+|+++|
T Consensus 96 IYfv~Pt~enI~~i~~D~~~~~Y~~y~i~Ft~~i~~~lle~LA~~~~~~d~~~~V~~V~e~y~d 159 (159)
T 1y9j_A 96 VYFVMPTEENIDRLCQDLRNQLYESYYLNFISAISRSKLEDIANAALAANAVTQVAKVFDQYLN 159 (159)
T ss_dssp EEEECCCHHHHHHHHHHHHHTCBSEEEEEESSCCCHHHHHHHHHHHHTTTCEEEEECCSTTTCC
T ss_pred EEEecCCHHHHHHHHHHhhhcccCeEEEEEcCCCCHHHHHHHHhccccCCcccceeeeehhhcC
Confidence 99999999999999999999999999999999999999999998 7788899999988875
No 8
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=24.75 E-value=79 Score=34.25 Aligned_cols=45 Identities=20% Similarity=0.350 Sum_probs=35.4
Q ss_pred ccChhhHHHHHHHHHHHHHHHHHHhh-------hhhcHHHHHHHHHccChhH
Q psy11096 316 FMNYGEIGQTIKLLMDDFNKRAKSQQ-------KVESIQDMKAFVENYPQFK 360 (554)
Q Consensus 316 ~~~~~el~~~v~~l~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~~~ 360 (554)
....+++.+.|++..++|+++.+..+ +..++++|++|++++|+++
T Consensus 287 ~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lk~~V~~LP~~~ 338 (650)
T 2xhe_A 287 HLHISEVFRKVKSSFDEFCVSARRLQGLRDSQQGEGGAGALKQMLKDLPQHR 338 (650)
T ss_dssp TSBHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSTTTHHHHHHHHHHCGGGH
T ss_pred ccCHHHHHHHHHHHHHHHHHHhhhhccccccccccccHHHHHHHHHHhHHHH
Confidence 34688888888888888887655333 4568999999999999986
No 9
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=19.89 E-value=53 Score=30.41 Aligned_cols=36 Identities=17% Similarity=0.332 Sum_probs=26.6
Q ss_pred eEEEEEECCCCHHHHHHHHHHHhccCCCCceEEEccccccChh
Q psy11096 501 DIIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNST 543 (554)
Q Consensus 501 ~viVFviGGvTy~E~~al~~l~~~~~~~~~~iiigsT~i~~~~ 543 (554)
.+-+.+.||+|-.- +..+.+. |.++++.++.|++++
T Consensus 173 ~~~I~VdGGI~~~t---i~~~~~a----GAd~~V~GsaIf~~~ 208 (227)
T 1tqx_A 173 NLNIQVDGGLNIET---TEISASH----GANIIVAGTSIFNAE 208 (227)
T ss_dssp TCEEEEESSCCHHH---HHHHHHH----TCCEEEESHHHHTCS
T ss_pred CCeEEEECCCCHHH---HHHHHHc----CCCEEEEeHHHhCCC
Confidence 45588999999764 4444444 688999999999653
No 10
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=15.93 E-value=51 Score=30.34 Aligned_cols=35 Identities=6% Similarity=0.193 Sum_probs=25.3
Q ss_pred EEEEEECCCCHHHHHHHHHHHhccCCCCceEEEccccccChh
Q psy11096 502 IIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNST 543 (554)
Q Consensus 502 viVFviGGvTy~E~~al~~l~~~~~~~~~~iiigsT~i~~~~ 543 (554)
+-|++.||+|-. .+.++.+. +.++++.++.|++.+
T Consensus 174 ~pi~v~GGI~~~---ni~~~~~a----GaD~vvvGsai~~~~ 208 (228)
T 1h1y_A 174 LDIEVDGGLGPS---TIDVAASA----GANCIVAGSSIFGAA 208 (228)
T ss_dssp SEEEEESSCSTT---THHHHHHH----TCCEEEESHHHHTSS
T ss_pred CCEEEECCcCHH---HHHHHHHc----CCCEEEECHHHHCCC
Confidence 348999999984 34444443 688888889999654
Done!