RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11096
(554 letters)
>d1epua_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Longfin inshore squid
(Loligo pealei) [TaxId: 6621]}
Length = 590
Score = 326 bits (836), Expect = e-105
Identities = 114/597 (19%), Positives = 236/597 (39%), Gaps = 68/597 (11%)
Query: 5 RAIKQYVIKMTEQSGPGMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYE 64
I V+ +++ K+L++D+ + +VS EI+ + + E I E
Sbjct: 8 EKIMNDVVLAVKKNA-EWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRRR----E 62
Query: 65 NMKHLKCIALLRPTKENIALLCKELK---NPKFGSYYIYFTNIIPKADIKTLAEYDEQES 121
+ L+ + L+ PT+E++ L + + NP++ +I+FT P+ K L +
Sbjct: 63 PLPLLEAVYLITPTEESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCKSTTARF 122
Query: 122 VREIEELYADYLPILPHFFSLNIPLCSNGHF------WDPVHLVRSSQGLIALLLSLNKN 175
++ ++E+ +LP FSL+ P ++ + R ++ + L +L +
Sbjct: 123 IKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPSRAQGGIPNKERCAEQIATLCATLGEY 182
Query: 176 PVIRYQASSEMTKRLAEKVKETI---IKEEKLFDMRQGDAVPVLLIIDRTCDPITPLLSQ 232
P +RY++ + A+ V++ + ++ LLI+DR DPI+PLL +
Sbjct: 183 PSVRYRSDFDENASFAQLVQQKLDAYRADDPTMGEGPQKDRSQLLILDRGFDPISPLLHE 242
Query: 233 WTYQAMLHELLTINNNRVDLSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKL 292
T+QAM ++LL I N+ + G K+V++ E DD + + + Q +
Sbjct: 243 LTFQAMAYDLLPIENDVYKYVNTGGNEVPEKEVLLD-EKDDLWVEMRHQHIAVVSQNVTK 301
Query: 293 LMDDFNKRAKRH-----EGVCDF------------YSSNLFMNYGEIGQTIKLLMDDFNK 335
+ F + G+ D S + +K +K
Sbjct: 302 KLKQFADEKRMGTAADKAGIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQQHVDK 361
Query: 336 RAKSQQKVESIQDMKAFVENYPQFKMKKLLTSGKIRDVEAVRLVMLYAIRYEHHSNNDLS 395
K +Q + D + +L KI + +R+++LY I S +L+
Sbjct: 362 LCKVEQDLAMGTDADGEKIRDHMRNIVPILLDQKISAYDKIRIILLYIIHKGGISEENLA 421
Query: 396 GLMDILRRIGVSESLVQMPLQVLDYSNEHSKYTHHNDSFSATQDVMVKKTQRFLKDLKGV 455
L+ +P + N+ + + + + +
Sbjct: 422 KLVQ----------HAHIPAEEKWIINDMQNLGVPIIQDGGRRK-IPQPYHTHNRKERQA 470
Query: 456 ENVY--TQHEPVLKDILDDLVKGKLKDTHFPYLDPYQGRSE--------GSRWY------ 499
++ Y ++ P +KDI++ V+ KL H+P+L+ R W+
Sbjct: 471 DHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPRPSCQQPVSVRYGHWHKDKGQA 530
Query: 500 -----QDIIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQVRS 551
+I+F+VGG +Y E +++ ++ NN ++LG+T + ++ +R
Sbjct: 531 SYKSGPRLIIFVVGGISYSEMRSAYEVTQTAKNNWE-VILGSTHILTPEGLLRDLRK 586
>d1dn1a_ e.25.1.1 (A:) Neuronal Sec1, NSec1 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 589
Score = 325 bits (833), Expect = e-105
Identities = 103/592 (17%), Positives = 231/592 (39%), Gaps = 68/592 (11%)
Query: 7 IKQYVIKMTEQSGPGMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENM 66
I VIK ++ G K+L++D+ + ++S ++I+ + + E I E +
Sbjct: 11 IMHDVIKKVKKKG-EWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDIN----KRREPL 65
Query: 67 KHLKCIALLRPTKENIALLCKELKNPKFGSY---YIYFTNIIPKADIKTLAEYDEQESVR 123
L+ + L+ P+++++ L + K+P Y +++FT+ P A L + + ++
Sbjct: 66 PSLEAVYLITPSEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVKSRAAKVIK 125
Query: 124 EIEELYADYLPILPHFFSLNIPLC------SNGHFWDPVHLVRSSQGLIALLLSLNKNPV 177
+ E+ +LP +SL+ + L R ++ + L +L + P
Sbjct: 126 TLTEINIAFLPYESQVYSLDSADSFQSFYSPHKAQMKNPILERLAEQIATLCATLKEYPA 185
Query: 178 IRYQASSEMTKRLAEKVKETI---IKEEKLFDMRQGDAVPVLLIIDRTCDPITPLLSQWT 234
+RY+ + LA+ +++ + ++ A LLI+DR DP +P+L + T
Sbjct: 186 VRYRGEYKDNALLAQLIQDKLDAYKADDPTMGEGPDKARSQLLILDRGFDPSSPVLHELT 245
Query: 235 YQAMLHELLTINNNRVDLSHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQTIKLLM 294
+QAM ++LL I N+ SGI + V+ E DD + + + E+ Q + +
Sbjct: 246 FQAMSYDLLPIENDVYKY-ETSGIGEARVKEVLLDEDDDLWIALRHKHIAEVSQEVTRSL 304
Query: 295 DDFNKRAK-RHEGVCDF---------------YSSNLFMNYGEIGQTIKLLMDDFNKRAK 338
DF+ + S + +K +K +
Sbjct: 305 KDFSSSKRMNTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQGTVDKLCR 364
Query: 339 SQQKVESIQDMKAFVENYPQFKMKKLLTSGKIRDVEAVRLVMLYAIRYEHHSNNDLSGLM 398
+Q + D + P + +L + + +R+++LY + +L+ L+
Sbjct: 365 VEQDLAMGTDAEGEKIKDPMRAIVPILLDANVSTYDKIRIILLYIFLKNGITEENLNKLI 424
Query: 399 DILRRIGVSESLVQMPLQVLDYSNEHSKYTHHNDSFSATQDVMVKKTQRFLKDLKGVENV 458
+ + ++ + H + + + +
Sbjct: 425 ---QHAQIPPEDSEI----------ITNMAHLGVPIVTDSTLRRRSKPERKERISEQTYQ 471
Query: 459 YTQHEPVLKDILDDLVKGKLKDTHFPYLDPYQGRSEGS-------------------RWY 499
++ P++KDI++D ++ KL H+PY+ S + R
Sbjct: 472 LSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFSTTAVSARYGHWHKNKAPGEYRSG 531
Query: 500 QDIIVFMVGGTTYEECLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQVRS 551
+I+F++GG + E C +++ ++G +L+G+T + + ++
Sbjct: 532 PRLIIFILGGVSLNEMRCAYEVTQANGK--WEVLIGSTHILTPQKLLDTLKK 581
>d1mqsa_ e.25.1.1 (A:) Sly1P protein {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 653
Score = 321 bits (823), Expect = e-102
Identities = 100/637 (15%), Positives = 213/637 (33%), Gaps = 127/637 (19%)
Query: 15 TEQSGPGMKILLLDKQTTSIVSMVFTQSEILQREVYMFEKIEISTQCDYENMKHLKCIAL 74
Q K+L+LD ++T+ +S V +++L+ + + I+ D + + I
Sbjct: 37 FNQQEIIWKVLILDIKSTATISSVLRVNDLLKAGITVHSLIK----QDRSPLPDVPAIYF 92
Query: 75 LRPTKENIALLCKELKNPKFGSYYIYFTNIIPKADIKTLAEY----DEQESVREIEELYA 130
+ PTKENI ++ +LK+ K+ +YI FT+ +P+ ++ LA+ + + ++++ + Y
Sbjct: 93 VSPTKENIDIIVNDLKSDKYSEFYINFTSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYL 152
Query: 131 DYLPILPHFFSLNIPLCSNGHF-------WDPVHLVRSSQGLIALLLSLNKNPVIRYQAS 183
D++ P FSL I + GL +L++N P+IR
Sbjct: 153 DFIVTEPELFSLEISNAYLTLNDPKTTEEEITGLCANIADGLFNTVLTINSIPIIRAAKG 212
Query: 184 SE-------MTKRLAEKVKETIIKEEKLFDMRQGDAVPVLLIIDRTCDPITPLLSQWTYQ 236
+ +L + V T VL+I+DR D + W YQ
Sbjct: 213 GPAEIIAEKLGTKLRDFVINTNSSSTSTLQGNDSLERGVLIILDRNIDFASMFSHSWIYQ 272
Query: 237 AMLHELLTINNNRVDL--------SHVSGISPDLKQVVVSYEHDDFYSSNLFMNYGEIGQ 288
M+ ++ ++ N V + + + P + +D F+ N + + E +
Sbjct: 273 CMVFDIFKLSRNTVTIPLESKENGTDNTTAKPLATKKYDIEPNDFFWMENSHLPFPEAAE 332
Query: 289 TIKLLMDDFNKRAKRHEGVCDFYSSNLFMNYGEIGQTIKLLMDDFNKRAKSQQKVESIQD 348
++ ++ + + A I N
Sbjct: 333 NVEAALNTYKEEAA----------------------EITRKTGVTNISDLDPNSNNDTVQ 370
Query: 349 MKAFVENYPQFKMKK--------------------------------------------L 364
++ V+ P+ KK L
Sbjct: 371 IQEVVKKLPELTAKKNTIDTHMNIFAALLSQLESKSLDTFFEVEQDPGSTKTRSRFLDIL 430
Query: 365 LTSGKIRDVEAVRLVMLYAI-RYEHHSNNDLSGLMDILRRIGVSESLVQMPLQVLDYSNE 423
+ +R ++ + + + + + + + ++ + L +
Sbjct: 431 KDGKTNNLEDKLRSFIVLYLTSTTGLPKDFVQNVENYFKENDYDINALKY-VYKLREFMQ 489
Query: 424 HSKYTHHNDSFSATQDVMVKKTQRFLKD----------------LKGVENVYTQHE---- 463
S + N S D K + L + G++ + + +
Sbjct: 490 LSNMSLQNKSLEDGSDSAFKPSNLTLSGIYGLTEGKLQGGVGSLISGIKKLLPEKKTIPI 549
Query: 464 ----PVLKDILDDLVKGKLKDTHFPYLDPYQGRSEGSR-----WYQDIIVFMVGGTTYEE 514
+ D L+ K + Y+DP R +R Y +VF+VGG Y E
Sbjct: 550 TNVVDAIMDPLNSSQKNLETTDSYLYIDPKITRGSHTRKPKRQSYNKSLVFVVGGGNYLE 609
Query: 515 CLCVHQMNTSSGNNARAILLGATTVHNSTSFMQQVRS 551
+ + S +N + ++ G+T + F+ ++
Sbjct: 610 YQNLQEWAHSQLHNPKKVMYGSTAITTPAEFLNEISR 646
>d2ifxa1 d.58.4.19 (A:1-108) Hypothetical protein Reut_A1503
{Ralstonia eutropha [TaxId: 106590]}
Length = 108
Score = 26.6 bits (58), Expect = 3.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 473 LVKGKLKDTHFPYLDPYQGRSEGSRWYQD 501
LV + DTH P+ D + G W++D
Sbjct: 43 LVAEQPTDTHVPFFDIGHVDAIGECWFKD 71
>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase
{Thermus thermophilus [TaxId: 274]}
Length = 98
Score = 25.9 bits (57), Expect = 5.1
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 219 IDRTCDPITPLLSQWTYQAMLHELLTINNNRVDLSHVSGISPDLKQVV 266
+D + + + L + RVD+ G++P L++ V
Sbjct: 45 LDLLVAFEEGR-TLLDHARLKLALEGLLGVRVDIVSERGLAPRLREQV 91
>d1zh8a2 d.81.1.5 (A:132-275) Hypothetical protein TM0312
{Thermotoga maritima [TaxId: 2336]}
Length = 144
Score = 26.4 bits (57), Expect = 6.4
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 357 PQF-KMKKLLTSGKIRDVEAVRLVMLYAIRYEHHSNND 393
P F K K+L+ SG I D + + + + +
Sbjct: 3 PAFWKAKELVESGAIGDPVFMNWQIWVGMDENNKYVHT 40
>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus
thermophilus [TaxId: 274]}
Length = 211
Score = 26.5 bits (58), Expect = 7.2
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 73 ALLRP--TKENIALLCKELKNPKFGSYYIY 100
LL+P T E +A +E F I
Sbjct: 9 TLLKPTATLEEVAKAAEEALEYGFYGLCIP 38
>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC
{Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 26.5 bits (58), Expect = 7.3
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 69 LKCI--ALLRP--TKENIALLCKELKNPKFGSYYIY 100
I L+P T ++I LC E + +F +
Sbjct: 36 KSAIEHTNLKPFATPDDIKKLCLEARENRFHGVCVN 71
>d1h6da2 d.81.1.5 (A:213-374) Glucose-fructose oxidoreductase
{Zymomonas mobilis [TaxId: 542]}
Length = 162
Score = 26.2 bits (56), Expect = 7.6
Identities = 4/37 (10%), Positives = 10/37 (27%), Gaps = 1/37 (2%)
Query: 357 PQF-KMKKLLTSGKIRDVEAVRLVMLYAIRYEHHSNN 392
P KL+ ++ + V + +
Sbjct: 2 PMNRAAVKLIRENQLGKLGMVTTDNSDVMDQNDPAQQ 38
>d2dira1 d.308.1.3 (A:8-92) THUMP domain-containing protein 1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 24.7 bits (54), Expect = 9.6
Identities = 4/24 (16%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 382 YAIRYEHHSNNDLSGLMDILRRIG 405
+ I Y+ +N+ ++ +++R +
Sbjct: 27 FQIVYKSRNNSHVNR-EEVIRELA 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.390
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,038,908
Number of extensions: 97757
Number of successful extensions: 292
Number of sequences better than 10.0: 1
Number of HSP's gapped: 266
Number of HSP's successfully gapped: 15
Length of query: 554
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 464
Effective length of database: 1,171,896
Effective search space: 543759744
Effective search space used: 543759744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.5 bits)