BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11097
(817 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-4
Length = 419
Score = 536 bits (1382), Expect = e-152, Method: Compositional matrix adjust.
Identities = 282/409 (68%), Positives = 306/409 (74%), Gaps = 69/409 (16%)
Query: 51 PWIQI-TDDAFIIVVNWVIEQLLDRDVINHEVV-----------HTDNQRVIIHVKDVND 98
PW+ + T+ A + W E+L I+ V+ +TDNQRVII VKDVND
Sbjct: 47 PWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVND 106
Query: 99 ESPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDSDHNIHYFIVRDRTGGRFEVDERSG 158
E PYFINRPLPMQAVVQLNAPPNTPVFTLQARDPD+DHNIHYFIVRDRTGGRFEVDERSG
Sbjct: 107 EPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSG 166
Query: 159 VVRTRGTDPFQLDQEYVLYVKAEDQNGRKDERKFQSTPEERLSIVGGKRAPQFYMPSYEA 218
VVRTRGTD FQLD EYVLYVKAEDQNG+ D+R+FQSTPEERLSIVGGKRAPQFYMPS
Sbjct: 167 VVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPS--- 223
Query: 219 EIPENQKKDTEYPSMTGTATVRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVAS 278
Y + EN
Sbjct: 224 ---------------------------------------YEAEIPEN------------Q 232
Query: 279 DKDGDNVSIISVKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPH 338
KD D IIS+KAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPH
Sbjct: 233 KKDSD---IISIKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPH 289
Query: 339 VYSLIVTATEDSGGFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKA 398
VYSLIVTATEDSGGFSTSV+LTIRVTDVNDNAPKFELPDYQAHN+DEDI GTSIL+VKA
Sbjct: 290 VYSLIVTATEDSGGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKA 349
Query: 399 TDADSGTNAEIEYHVSDDNFAVDSNGVINNHKTLDADNNNAYYEFVITA 447
D+DSG+NAEIEY VSDD+FAVDSNG+I N+K LDADNNNAYYEF++TA
Sbjct: 350 MDSDSGSNAEIEYLVSDDHFAVDSNGIIVNNKQLDADNNNAYYEFIVTA 398
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 91/384 (23%), Positives = 153/384 (39%), Gaps = 55/384 (14%)
Query: 319 TSGIVKLAKELDFEDLRQPHV--YSLIVTATEDSGG--FSTSVELTIRVTDVNDNAPKF- 373
T+G V++ K+ D+E+L + +I+T + G ++ + + I V DVND P F
Sbjct: 53 TNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFI 112
Query: 374 ELPDYQAHNIDEDITTGTSILKVKATDADSGTNAEIEYHVSDDN----FAVDS-NGVINN 428
P + + T + ++A D D+ N I Y + D F VD +GV+
Sbjct: 113 NRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVV-- 168
Query: 429 HKTLDADNNNAYYEFVITAXXXXXXXXXXXXXRNNKPPLWDNAIYGP-----------IH 477
+T D E+V+ + P + + G
Sbjct: 169 -RTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEAE 227
Query: 478 IRENXXXXXXXXXXKA--------RFGFVGGSTSSGQFVIEDITGVIRLNSKSISLDRDK 529
I EN KA R+ +G F I +G+++L +K + + +
Sbjct: 228 IPENQKKDSDIISIKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKL-AKELDFEDLR 286
Query: 530 ----YELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKPVFRECSTYYPKVEEGA 585
Y L VTA +D + + + + +TDVNDN P F V+E
Sbjct: 287 QPHVYSLIVTATEDSGGFS--------TSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDI 338
Query: 586 PNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTNKVFDREGDDGK 645
P G+ +++V A D D G N +++Y + F VD G +V NK D + ++
Sbjct: 339 PLGTSILRVKAMDSDSGSNAEIEYLVSDD------HFAVD-SNGIIVNNKQLDADNNNA- 390
Query: 646 FVSVTIKATDQGEPSLEGVCSFTV 669
+ + A D+GEP GV + V
Sbjct: 391 YYEFIVTAKDKGEPPKSGVATVRV 414
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/273 (25%), Positives = 113/273 (41%), Gaps = 25/273 (9%)
Query: 497 FVGGSTSSGQFVIEDITGVIRLNSKSISLDRDKYELNVTAVD-DGACCANGDQSVHTATA 555
F+ + G+F +++ +GV+R + +Y L V A D +G QS
Sbjct: 149 FIVRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERL 208
Query: 556 VVVVFITDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQP 615
+V P F +Y ++ E S +I + A + +++Y++ Q
Sbjct: 209 SIVG-----GKRAPQFY-MPSYEAEIPENQKKDSDIISIKAK---SFADREIRYTLKAQ- 258
Query: 616 NQKGAKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEGVCSFTVEITDVN 675
Q F + +G V K D E V I + T+ +TDVN
Sbjct: 259 GQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIRVTDVN 318
Query: 676 DNPPLFDRQKY-VENVKQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEI 734
DN P F+ Y NV +D +GT+ILRV A D D+ +N I Y +S + +D
Sbjct: 319 DNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVSDDHFAVD------ 372
Query: 735 QPESGWIVLKKPLD-----VYYYIVDSPRNEGK 762
+G IV K LD YY + + +++G+
Sbjct: 373 --SNGIIVNNKQLDADNNNAYYEFIVTAKDKGE 403
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 94/223 (42%), Gaps = 23/223 (10%)
Query: 551 HTATAVVVVFITDVNDNKPVF-RECSTYYPKVEEGAPNGSPVIKVHATDEDKGVNGQVKY 609
+T V++ + DVND P F V+ AP +PV + A D D N + Y
Sbjct: 91 YTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHY 148
Query: 610 SIVQQPNQKGAKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQ-GEPSLEGVCSFT 668
IV+ ++ G +F VDE +G VV + D D ++V + +KA DQ G+ S
Sbjct: 149 FIVR--DRTGGRFEVDERSG-VVRTRGTDLFQLDMEYV-LYVKAEDQNGKVDDRRFQSTP 204
Query: 669 VEITDV--NDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQ 726
E + P F Y + ++ ++I+ + A + + I YTL A
Sbjct: 205 EERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDIISIKAK---SFADREIRYTLKA--QG 259
Query: 727 MDLEYFEIQPESGWIVLKKPLD--------VYYYIVDSPRNEG 761
F I P SG + L K LD VY IV + + G
Sbjct: 260 QGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSG 302
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 54/160 (33%), Gaps = 52/160 (32%)
Query: 89 VIIHVKDVNDESPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDSDHN--IHYFIVRDR 146
+ I V DVND +P F P V + P T + ++A D DS N I Y + D
Sbjct: 310 LTIRVTDVNDNAPKF-ELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVSDDH 368
Query: 147 TGGRFEVDERSGVVRTRGTDPFQLDQEYVLYVKAEDQNGRKDERKFQSTPEERLSIVGGK 206
F VD +V + D + Y V A+D+
Sbjct: 369 ----FAVDSNGIIVNNKQLDADNNNAYYEFIVTAKDKGE--------------------- 403
Query: 207 RAPQFYMPSYEAEIPENQKKDTEYPSMTGTATVRIYTKNK 246
P +G ATVR+YTKNK
Sbjct: 404 ------------------------PPKSGVATVRVYTKNK 419
>pdb|3UBF|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, I
pdb|3UBG|A Chain A, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
pdb|3UBG|B Chain B, Crystal Structure Of Drosophila N-Cadherin Ec1-3, Ii
Length = 316
Score = 401 bits (1031), Expect = e-112, Method: Compositional matrix adjust.
Identities = 215/332 (64%), Positives = 234/332 (70%), Gaps = 69/332 (20%)
Query: 51 PWIQI-TDDAFIIVVNWVIEQLLDRDVINHEVV-----------HTDNQRVIIHVKDVND 98
PW+ + T+ A + W E+L I+ V+ +TDNQRVII VKDVND
Sbjct: 42 PWVTVETNGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVND 101
Query: 99 ESPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDSDHNIHYFIVRDRTGGRFEVDERSG 158
E PYFINRPLPMQAVVQLNAPPNTPVFTLQARDPD+DHNIHYFIVRDRTGGRFEVDERSG
Sbjct: 102 EPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSG 161
Query: 159 VVRTRGTDPFQLDQEYVLYVKAEDQNGRKDERKFQSTPEERLSIVGGKRAPQFYMPSYEA 218
VVRTRGTD FQLD EYVLYVKAEDQNG+ D+R+FQSTPEERLSIVGGKRAPQFYMPSYEA
Sbjct: 162 VVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVGGKRAPQFYMPSYEA 221
Query: 219 EIPENQKKDTEYPSMTGTATVRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVAS 278
EIPENQKKD++ + I K+ D E ++
Sbjct: 222 EIPENQKKDSD--------IISIKAKSFADREIRY------------------------- 248
Query: 279 DKDGDNVSIISVKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPH 338
TLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPH
Sbjct: 249 ------------------------TLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPH 284
Query: 339 VYSLIVTATEDSGGFSTSVELTIRVTDVNDNA 370
VYSLIVTATEDSGGFSTSV+LTIRVTDVNDNA
Sbjct: 285 VYSLIVTATEDSGGFSTSVDLTIRVTDVNDNA 316
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 94/223 (42%), Gaps = 23/223 (10%)
Query: 551 HTATAVVVVFITDVNDNKPVF-RECSTYYPKVEEGAPNGSPVIKVHATDEDKGVNGQVKY 609
+T V++ + DVND P F V+ AP +PV + A D D N + Y
Sbjct: 86 YTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHY 143
Query: 610 SIVQQPNQKGAKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQ-GEPSLEGVCSFT 668
IV+ ++ G +F VDE +G VV + D D ++V + +KA DQ G+ S
Sbjct: 144 FIVR--DRTGGRFEVDERSG-VVRTRGTDLFQLDMEYV-LYVKAEDQNGKVDDRRFQSTP 199
Query: 669 VEITDV--NDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQ 726
E + P F Y + ++ ++I+ + A + + I YTL A
Sbjct: 200 EERLSIVGGKRAPQFYMPSYEAEIPENQKKDSDIISIKAK---SFADREIRYTLKA--QG 254
Query: 727 MDLEYFEIQPESGWIVLKKPLD--------VYYYIVDSPRNEG 761
F I P SG + L K LD VY IV + + G
Sbjct: 255 QGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSG 297
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 91/226 (40%), Gaps = 42/226 (18%)
Query: 239 VRIYTKNKNDEEPKFSQQVYTPN--VDENAGPNTLVTTVVASDKDGD-NVSIISVKAKSF 295
V I K+ NDE P F + V NA PNT V T+ A D D D N+ V+ ++
Sbjct: 92 VIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRT- 150
Query: 296 ADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGG--- 352
G F + SG+V+ DL Q + ++ ED G
Sbjct: 151 ---------------GGRFEVDERSGVVRTRG----TDLFQLDMEYVLYVKAEDQNGKVD 191
Query: 353 ---FSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSGTNAEI 409
F ++ E + + AP+F +P Y+A I E+ + I+ +KA S + EI
Sbjct: 192 DRRFQSTPEERLSIVG-GKRAPQFYMPSYEAE-IPENQKKDSDIISIKAK---SFADREI 246
Query: 410 EYHVSDDNFAVD------SNGVINNHKTLDADN--NNAYYEFVITA 447
Y + ++G++ K LD ++ Y ++TA
Sbjct: 247 RYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTA 292
>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3
Length = 322
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 86/263 (32%), Positives = 125/263 (47%), Gaps = 28/263 (10%)
Query: 497 FVGGSTSSGQFVIEDITGVIRLNSKSISLDRDKYELNVTAVDDGACCANGDQSVHTATAV 556
+ G + F I DITG I + ++ +Y L AVD ++ + +
Sbjct: 38 ILSGDGAGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVD-----FETNKPLEPPSEF 92
Query: 557 VVVFITDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGVNG---QVKYSIVQ 613
++ + D+NDN P F Y+ V E + G+ V V ATD D V G ++ YSI++
Sbjct: 93 IIK-VQDINDNAPEFLN-GPYHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILE 150
Query: 614 -QPNQKGAKFTVDEETGEVVTNKV-FDREGDDGKFVSVTIKATDQGEPS--LEGVCSFTV 669
QP F+++ ET + T DRE + V I+A D G S L G + TV
Sbjct: 151 GQP-----YFSIEPETAIIKTALPNMDREAKEEYLV--VIQAKDMGGHSGGLSGTTTLTV 203
Query: 670 EITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDL 729
+TDVNDNPP F + Y +V +D +GT I RV A+D+D N Y + +
Sbjct: 204 TLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDIGENAQSSYDI---IDGDGT 260
Query: 730 EYFEI----QPESGWIVLKKPLD 748
FEI Q + G I L+KPLD
Sbjct: 261 ALFEITSDAQAQDGVIRLRKPLD 283
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/212 (33%), Positives = 102/212 (48%), Gaps = 27/212 (12%)
Query: 241 IYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREI 300
I ++ ND P+F Y V E + T VT V A+D D D V S K +
Sbjct: 94 IKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDAD-DPVYGNSAK--------L 144
Query: 301 RYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATE---DSGGFSTSV 357
Y++ +G F+I P + I+K A L D Y +++ A + SGG S +
Sbjct: 145 VYSIL---EGQPYFSIEPETAIIKTA--LPNMDREAKEEYLVVIQAKDMGGHSGGLSGTT 199
Query: 358 ELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSGTNAEIEYHVSDDN 417
LT+ +TDVNDN PKF Y ++ ED+ GT+I +VKA D D G NA+ Y + D +
Sbjct: 200 TLTVTLTDVNDNPPKFAQSLYH-FSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGD 258
Query: 418 ----FAVDS-----NGVINNHKTLDADNNNAY 440
F + S +GVI K LD + +Y
Sbjct: 259 GTALFEITSDAQAQDGVIRLRKPLDFETKKSY 290
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 62/122 (50%), Gaps = 12/122 (9%)
Query: 298 REIRYTLKAQGQGAGT-FNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTAT--EDSGGFS 354
++I+Y L G GAGT F I +G + K LD E+ + Y+L A E +
Sbjct: 33 KKIKYIL--SGDGAGTIFQINDITGDIHAIKRLDREEKAE---YTLTAQAVDFETNKPLE 87
Query: 355 TSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADS---GTNAEIEY 411
E I+V D+NDNAP+F Y A + E GTS+ V ATDAD G +A++ Y
Sbjct: 88 PPSEFIIKVQDINDNAPEFLNGPYHA-TVPEMSILGTSVTNVTATDADDPVYGNSAKLVY 146
Query: 412 HV 413
+
Sbjct: 147 SI 148
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 21/163 (12%)
Query: 591 VIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTNKVFDREGDDGKFVSVT 650
V ++H TD D G + ++KY + + G F +++ TG++ K DRE + ++T
Sbjct: 21 VGRLH-TDLDPG-SKKIKY--ILSGDGAGTIFQINDITGDIHAIKRLDRE--EKAEYTLT 74
Query: 651 IKATD-QGEPSLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDED 709
+A D + LE F +++ D+NDN P F Y V + + +GT++ V+A+D D
Sbjct: 75 AQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDAD 134
Query: 710 ---ADNNGAIVYTLSAPYNQMDLE---YFEIQPESGWIVLKKP 746
N+ +VY++ LE YF I+PE+ I P
Sbjct: 135 DPVYGNSAKLVYSI--------LEGQPYFSIEPETAIIKTALP 169
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 107/267 (40%), Gaps = 73/267 (27%)
Query: 90 IIHVKDVNDESPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPD-----SDHNIHYFIVR 144
II V+D+ND +P F+N P A V + T V + A D D + + Y I+
Sbjct: 93 IIKVQDINDNAPEFLNGP--YHATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILE 150
Query: 145 DRTGGRFEVDERSGVVRTRGTD-PFQLDQEYVLYVKAEDQNGRKDERKFQSTPEERLSIV 203
+ F ++ + +++T + + +EY++ ++A+D G
Sbjct: 151 GQP--YFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHS---------------- 192
Query: 204 GGKRAPQFYMPSYEAEIPENQKKDTEYPSMTGTATVRIYTKNKNDEEPKFSQQVYTPNVD 263
GG ++GT T+ + + ND PKF+Q +Y +V
Sbjct: 193 GG---------------------------LSGTTTLTVTLTDVNDNPPKFAQSLYHFSVP 225
Query: 264 ENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGAGTFNIGPTS--- 320
E+ T + V A+D+D I A+S D G G F I +
Sbjct: 226 EDVVLGTAIGRVKANDQD------IGENAQSSYDI-------IDGDGTALFEITSDAQAQ 272
Query: 321 -GIVKLAKELDFEDLRQPHVYSLIVTA 346
G+++L K LDFE + Y+L V A
Sbjct: 273 DGVIRLRKPLDFETKKS---YTLKVEA 296
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 79/254 (31%), Positives = 118/254 (46%), Gaps = 23/254 (9%)
Query: 505 GQFVIEDITGVIRLNSKSISLDRDKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDV 564
G F IE TG + + LDR++Y+ V + A NG S + + + D
Sbjct: 204 GVFRIEWETGWMLVTR---PLDREEYDKYV--LSSHAVSENG--SPVEEPMEITINVIDQ 256
Query: 565 NDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGV---NGQVKYSIVQQPNQKGAK 621
NDN+P F + + V EG G+ V+ V ATDED + NG + YSI++Q ++
Sbjct: 257 NDNRPKFTQ-DVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIP 315
Query: 622 --FTVDEETGEV-VTNKVFDREGDDGKF--VSVTIKATDQGEPSLEGVCSFTVEITDVND 676
FT++ ETG + + DRE KF ++T++ATD L ++ITD ND
Sbjct: 316 NLFTINRETGVISLIGTGLDRE----KFPEYTLTVQATDLEGAGLSVEGKAIIQITDAND 371
Query: 677 NPPLFDRQKYVENVKQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQP 736
N P+FD + Y V ++ IG + R+S +D D A N+ P
Sbjct: 372 NAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDP 430
Query: 737 ES--GWIVLKKPLD 748
ES G + K LD
Sbjct: 431 ESNQGILTTAKGLD 444
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 83/172 (48%), Gaps = 14/172 (8%)
Query: 239 VRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADR 298
+ I ++ND PKF+Q V+ +V E P T V V A+D+D + S+ V + S +
Sbjct: 249 ITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQ 308
Query: 299 EIRYTLKAQGQGAGTFNIGPTSGIVKL-AKELDFEDLRQPHVYSLIVTATEDSG-GFSTS 356
+ + F I +G++ L LD E + Y+L V AT+ G G S
Sbjct: 309 DPEEPI------PNLFTINRETGVISLIGTGLDREKFPE---YTLTVQATDLEGAGLSVE 359
Query: 357 VELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDAD-SGTNA 407
+ I++TD NDNAP F+ Y A + +I G + ++ TD D GT A
Sbjct: 360 GKAIIQITDANDNAPIFDPKTYTALVPENEI--GFEVQRLSVTDLDMPGTPA 409
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 42/198 (21%)
Query: 606 QVKYSIVQQP--NQKGAKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEG 663
+V YSI Q N F ++ ETG ++ + DRE D K+V + ++ G P +E
Sbjct: 188 KVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYD-KYVLSSHAVSENGSP-VEE 245
Query: 664 VCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDADN----NGAIVYT 719
T+ + D NDN P F + + +V++ GT ++ VSA+DED DN NG + Y+
Sbjct: 246 PMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDED-DNIDSLNGVLSYS 304
Query: 720 LSAPYNQMDLEYFEIQPESGWIVLKKPLDVYYYIVDSPRNEGKDFFEINLQSGEV-FTKV 778
+LK+ P + F IN ++G +
Sbjct: 305 ----------------------ILKQ----------DPEEPIPNLFTINRETGVISLIGT 332
Query: 779 VFDREKQGAYALEVEARD 796
DREK Y L V+A D
Sbjct: 333 GLDREKFPEYTLTVQATD 350
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 10/119 (8%)
Query: 290 VKAKSFADREIRYTLKAQGQGA-----GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIV 344
V+ KS DR + GQGA G F I +G + + + LD E+ + Y L
Sbjct: 177 VQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDK---YVLSS 233
Query: 345 TATEDSGG-FSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDAD 402
A ++G +E+TI V D NDN PKF ++ ++ E + GT ++ V ATD D
Sbjct: 234 HAVSENGSPVEEPMEITINVIDQNDNRPKFTQDVFRG-SVREGVQPGTQVMAVSATDED 291
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 95/224 (42%), Gaps = 34/224 (15%)
Query: 232 SMTGTATVRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVK 291
S+ G A ++I + ND P F + YT V EN + +S+ +
Sbjct: 357 SVEGKAIIQI--TDANDNAPIFDPKTYTALVPEN-----------EIGFEVQRLSVTDLD 403
Query: 292 AKSFADREIRYTLKAQGQGAGTFNIGPTS--GIVKLAKELDFEDLRQPHVYSLIVTATED 349
+ Y ++ G P S GI+ AK LDFE LR+ +V + V E+
Sbjct: 404 MPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFE-LRKQYVLQITV---EN 459
Query: 350 SGGFSTSVELTIRVT-----DVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSG 404
+ FS + + DVN+ AP F +P ++ ED++ G I+ + A D D
Sbjct: 460 AEPFSVPLPTSTATVTVTVEDVNE-APFF-VPAVSRVDVSEDLSRGEKIISLVAQDPDKQ 517
Query: 405 TNAEIEYHVSDDN---FAVDS-NGVINNHKTLDADN----NNAY 440
++ Y + +D V+ NG++ + LD ++ NN Y
Sbjct: 518 QIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTY 561
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 581 VEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTNKVFDRE 640
V E G +I + A D DK ++ Y I P + TV+++ G V N DRE
Sbjct: 496 VSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARW---LTVNKDNGIVTGNGNLDRE 552
Query: 641 GDDGK--FVSVTIKATDQGEPSLEGVCSFTVEITDVNDNPPL 680
+ K +V + TD G G + + + DVNDN P+
Sbjct: 553 SEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPV 594
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 497 FVGGSTSSGQFVIED---ITGVIRLNSKSISLDRDKYELNVTAVDDGACCANGDQSVHTA 553
F+G + V +D +TG L+ +S + + Y + + DDG SV T
Sbjct: 525 FIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGV-------SVGTG 577
Query: 554 TAVVVVFITDVNDNKPV 570
T +++ + DVNDN PV
Sbjct: 578 TGTLILHVLDVNDNGPV 594
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain
Length = 546
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/254 (31%), Positives = 118/254 (46%), Gaps = 23/254 (9%)
Query: 505 GQFVIEDITGVIRLNSKSISLDRDKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDV 564
G F IE TG + + LDR++Y+ V + A NG S + + + D
Sbjct: 55 GVFRIEWETGWMLVTRP---LDREEYDKYV--LSSHAVSENG--SPVEEPMEITINVIDQ 107
Query: 565 NDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGV---NGQVKYSIVQQPNQKGAK 621
NDN+P F + + V EG G+ V+ V ATDED + NG + YSI++Q ++
Sbjct: 108 NDNRPKFTQ-DVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIP 166
Query: 622 --FTVDEETGEV-VTNKVFDREGDDGKF--VSVTIKATDQGEPSLEGVCSFTVEITDVND 676
FT++ ETG + + DRE KF ++T++ATD L ++ITD ND
Sbjct: 167 NLFTINRETGVISLIGTGLDRE----KFPEYTLTVQATDLEGAGLSVEGKAIIQITDAND 222
Query: 677 NPPLFDRQKYVENVKQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQP 736
N P+FD + Y V ++ IG + R+S +D D A N+ P
Sbjct: 223 NAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDP 281
Query: 737 ES--GWIVLKKPLD 748
ES G + K LD
Sbjct: 282 ESNQGILTTAKGLD 295
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 83/172 (48%), Gaps = 14/172 (8%)
Query: 239 VRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADR 298
+ I ++ND PKF+Q V+ +V E P T V V A+D+D + S+ V + S +
Sbjct: 100 ITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQ 159
Query: 299 EIRYTLKAQGQGAGTFNIGPTSGIVKL-AKELDFEDLRQPHVYSLIVTATEDSG-GFSTS 356
+ + F I +G++ L LD E + Y+L V AT+ G G S
Sbjct: 160 DPEEPI------PNLFTINRETGVISLIGTGLDREKFPE---YTLTVQATDLEGAGLSVE 210
Query: 357 VELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDAD-SGTNA 407
+ I++TD NDNAP F+ Y A + +I G + ++ TD D GT A
Sbjct: 211 GKAIIQITDANDNAPIFDPKTYTALVPENEI--GFEVQRLSVTDLDMPGTPA 260
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 42/198 (21%)
Query: 606 QVKYSIVQQP--NQKGAKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEG 663
+V YSI Q N F ++ ETG ++ + DRE D K+V + ++ G P +E
Sbjct: 39 KVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYD-KYVLSSHAVSENGSP-VEE 96
Query: 664 VCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDADN----NGAIVYT 719
T+ + D NDN P F + + +V++ GT ++ VSA+DED DN NG + Y+
Sbjct: 97 PMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDED-DNIDSLNGVLSYS 155
Query: 720 LSAPYNQMDLEYFEIQPESGWIVLKKPLDVYYYIVDSPRNEGKDFFEINLQSGEV-FTKV 778
+LK+ P + F IN ++G +
Sbjct: 156 ----------------------ILKQ----------DPEEPIPNLFTINRETGVISLIGT 183
Query: 779 VFDREKQGAYALEVEARD 796
DREK Y L V+A D
Sbjct: 184 GLDREKFPEYTLTVQATD 201
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 57/119 (47%), Gaps = 10/119 (8%)
Query: 290 VKAKSFADREIRYTLKAQGQGA-----GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIV 344
V+ KS DR + GQGA G F I +G + + + LD E+ + Y L
Sbjct: 28 VQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDK---YVLSS 84
Query: 345 TATEDSGG-FSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDAD 402
A ++G +E+TI V D NDN PKF D ++ E + GT ++ V ATD D
Sbjct: 85 HAVSENGSPVEEPMEITINVIDQNDNRPKFTQ-DVFRGSVREGVQPGTQVMAVSATDED 142
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 95/224 (42%), Gaps = 34/224 (15%)
Query: 232 SMTGTATVRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVK 291
S+ G A ++I + ND P F + YT V EN + +S+ +
Sbjct: 208 SVEGKAIIQI--TDANDNAPIFDPKTYTALVPEN-----------EIGFEVQRLSVTDLD 254
Query: 292 AKSFADREIRYTLKAQGQGAGTFNIGPTS--GIVKLAKELDFEDLRQPHVYSLIVTATED 349
+ Y ++ G P S GI+ AK LDFE LR+ +V + V E+
Sbjct: 255 MPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFE-LRKQYVLQITV---EN 310
Query: 350 SGGFSTSVELTIRVT-----DVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSG 404
+ FS + + DVN+ AP F +P ++ ED++ G I+ + A D D
Sbjct: 311 AEPFSVPLPTSTATVTVTVEDVNE-APFF-VPAVSRVDVSEDLSRGEKIISLVAQDPDKQ 368
Query: 405 TNAEIEYHVSDDN---FAVDS-NGVINNHKTLDADN----NNAY 440
++ Y + +D V+ NG++ + LD ++ NN Y
Sbjct: 369 QIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESEYVKNNTY 412
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 581 VEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTNKVFDRE 640
V E G +I + A D DK ++ Y I P + TV+++ G V N DRE
Sbjct: 347 VSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARW---LTVNKDNGIVTGNGNLDRE 403
Query: 641 GDDGK--FVSVTIKATDQGEPSLEGVCSFTVEITDVNDNPPL 680
+ K +V + TD G G + + + DVNDN P+
Sbjct: 404 SEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPV 445
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 512 ITGVIRLNSKSISLDRDKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKPV 570
+TG L+ +S + + Y + + DDG SV T T +++ + DVNDN PV
Sbjct: 394 VTGNGNLDRESEYVKNNTYTVIMLVTDDGV-------SVGTGTGTLILHVLDVNDNGPV 445
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain
pdb|3Q2V|B Chain B, Crystal Structure Of Mouse E-Cadherin Ectodomain
Length = 550
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 114/228 (50%), Gaps = 27/228 (11%)
Query: 505 GQFVIEDITGVIRLNSKSISLDRD---KYELNVTAVDDGACCANGDQSVHTATAVVVVFI 561
G F+IE TG +++ LDR+ KY L AV +NG ++V +V+ +
Sbjct: 49 GVFIIERETGWLKVTQ---PLDREAIAKYILYSHAV-----SSNG-EAVEDPMEIVIT-V 98
Query: 562 TDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGVN---GQVKYSIVQQPNQK 618
TD NDN+P F + + V EGA G+ V+KV ATD D VN + Y+IV Q +
Sbjct: 99 TDQNDNRPEFTQ-EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPEL 157
Query: 619 GAK--FTVDEETGEV-VTNKVFDREGDDGKFVSVTIKATD-QGEPSLEGVCSFTVEITDV 674
K FTV+ +TG + V DRE ++ ++A D QGE L + + D+
Sbjct: 158 PHKNMFTVNRDTGVISVLTSGLDRES--YPTYTLVVQAADLQGE-GLSTTAKAVITVKDI 214
Query: 675 NDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDADNNGA--IVYTL 720
NDN P+F+ Y V ++ + I + +D+DA N A VYT+
Sbjct: 215 NDNAPVFNPSTYQGQVPEN-EVNARIATLKVTDDDAPNTPAWKAVYTV 261
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 98/215 (45%), Gaps = 25/215 (11%)
Query: 239 VRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADR 298
+ I ++ND P+F+Q+V+ +V E A P T V V A+D D D V + A
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDD------VNTYNAA-- 145
Query: 299 EIRYTLKAQGQ---GAGTFNIGPTSGIVK-LAKELDFEDLRQPHVYSLIVTATEDSG-GF 353
I YT+ +Q F + +G++ L LD E Y+L+V A + G G
Sbjct: 146 -IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYP---TYTLVVQAADLQGEGL 201
Query: 354 STSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSGTNAEIEYHV 413
ST+ + I V D+NDNAP F YQ + ++ + LKV DA + + Y V
Sbjct: 202 STTAKAVITVKDINDNAPVFNPSTYQGQVPENEVNARIATLKVTDDDAPNTPAWKAVYTV 261
Query: 414 SDD---NFAV-----DSNGVINNHKTLDADNNNAY 440
+D F V ++G++ K LD + Y
Sbjct: 262 VNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQY 296
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 11/132 (8%)
Query: 290 VKAKSFADREIRYTLKAQGQGA-----GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIV 344
V+ KS D+E + GQGA G F I +G +K+ + LD E + + +YS V
Sbjct: 22 VQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV 81
Query: 345 TATEDSGGFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSG 404
++ + +E+ I VTD NDN P+F ++ ++ E GTS++KV ATDAD
Sbjct: 82 SS--NGEAVEDPMEIVITVTDQNDNRPEFTQEVFEG-SVAEGAVPGTSVMKVSATDADDD 138
Query: 405 T---NAEIEYHV 413
NA I Y +
Sbjct: 139 VNTYNAAIAYTI 150
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 17/158 (10%)
Query: 606 QVKYSIVQQPNQKG--AKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEG 663
+V YSI Q K F ++ ETG + + DRE K++ + + GE ++E
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAI-AKYILYSHAVSSNGE-AVED 90
Query: 664 VCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDAD---NNGAIVYTL 720
+ +TD NDN P F ++ + +V + A GT++++VSA+D D D N AI YT+
Sbjct: 91 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 721 SA-----PYNQMDLEYFEIQPESGWI-VLKKPLDVYYY 752
+ P+ M F + ++G I VL LD Y
Sbjct: 151 VSQDPELPHKNM----FTVNRDTGVISVLTSGLDRESY 184
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 108/247 (43%), Gaps = 19/247 (7%)
Query: 507 FVIEDITGVIRLNSKSISLDRDKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVND 566
F + TGVI + + LDR+ Y V G + TA V+ + D+ND
Sbjct: 163 FTVNRDTGVISVLTSG--LDRESYPTYTLVVQAADLQGEG----LSTTAKAVITVKDIND 216
Query: 567 NKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGVNGQVK--YSIVQQPNQKGAKFTV 624
N PVF STY +V E N + + TD+D K Y++V P+Q+ T
Sbjct: 217 NAPVFNP-STYQGQVPENEVNAR-IATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVT- 273
Query: 625 DEET--GEVVTNKVFDREGDDGKFVSVTIKATDQGEPSL-EGVCSFTVEITDVNDNPPLF 681
D T G + T K D E + V ++ + E SL + TV++ DVN+ P
Sbjct: 274 DPTTNDGILKTAKGLDFEAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNEAPIFM 333
Query: 682 DRQKYVENVKQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQPESGWI 741
++ VE V +D +G I +A + D + I Y + + + EI PE+G I
Sbjct: 334 PAERRVE-VPEDFGVGQEITSYTAREPDTFMDQKITYRIW----RDTANWLEINPETGAI 388
Query: 742 VLKKPLD 748
+ +D
Sbjct: 389 FTRAEMD 395
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 86/378 (22%), Positives = 129/378 (34%), Gaps = 89/378 (23%)
Query: 66 WV-IEQLLDRDVINHEVVHT-----------DNQRVIIHVKDVNDESPYFINRPLPMQAV 113
W+ + Q LDR+ I ++++ D ++I V D ND P F +
Sbjct: 59 WLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVF--EGS 116
Query: 114 VQLNAPPNTPVFTLQARDPDSDHN-----IHYFIVRDRT----GGRFEVDERSGVVRTRG 164
V A P T V + A D D D N I Y IV F V+ +GV+
Sbjct: 117 VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLT 176
Query: 165 TDPFQLDQE----YVLYVKAEDQNGRKDERKFQSTPEERLSIVGGKRAPQFYMPSYEAEI 220
+ LD+E Y L V+A D G
Sbjct: 177 SG---LDRESYPTYTLVVQAADLQGE---------------------------------- 199
Query: 221 PENQKKDTEYPSMTGTATVRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDK 280
++ TA I K+ ND P F+ Y V EN N + T+ +D
Sbjct: 200 -----------GLSTTAKAVITVKDINDNAPVFNPSTYQGQVPENEV-NARIATLKVTDD 247
Query: 281 DGDNVSIISVKAKSFADREIRYTLKAQGQGAGTFNIGPTS--GIVKLAKELDFEDLRQPH 338
D N D + ++ + PT+ GI+K AK LDFE +Q
Sbjct: 248 DAPNTPAWKAVYTVVNDPDQQFVVVTD----------PTTNDGILKTAKGLDFEAKQQYI 297
Query: 339 VYSLIVTATEDSGGFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKA 398
++ + G S + AP F +P + + ED G I A
Sbjct: 298 LHVRVENEEPFEGSLVPSTATVTVDVVDVNEAPIF-MPAERRVEVPEDFGVGQEITSYTA 356
Query: 399 TDADSGTNAEIEYHVSDD 416
+ D+ + +I Y + D
Sbjct: 357 REPDTFMDQKITYRIWRD 374
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain
Length = 559
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 104/201 (51%), Gaps = 24/201 (11%)
Query: 504 SGQFVIEDITGVIRLNSKSISLDRD---KYELNVTAVDDGACCANGDQSVHTATAVVVVF 560
+G F+I I+G + S + LDR+ ++ L AVD NG+Q + +V+
Sbjct: 48 TGIFIINPISGQL---SVTKPLDRELIARFHLRAHAVD-----INGNQVENPID--IVIN 97
Query: 561 ITDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDED--KGVNGQVKYSIVQQPNQK 618
+ D+NDN+P F + V EG+ G+ V+ V A D D +NG ++Y I+ Q
Sbjct: 98 VIDMNDNRPEFLH-QVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPST 156
Query: 619 GAK--FTVDEETGEVVTNKV-FDREGDDGKFVSVTIKATD-QGEPS--LEGVCSFTVEIT 672
+ FT++ ETG+++T DRE + ++ I+ATD +G P+ L + + +T
Sbjct: 157 PSPNMFTINNETGDIITVAAGLDRE--KVQQYTLIIQATDMEGNPTYGLSNTATAVITVT 214
Query: 673 DVNDNPPLFDRQKYVENVKQD 693
DVNDNPP F + V ++
Sbjct: 215 DVNDNPPEFTAMTFYGEVPEN 235
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 100/227 (44%), Gaps = 22/227 (9%)
Query: 498 VGGSTSSGQFVI----EDITGVIRLNSKSISLDRDKYELNVTAVDDGACCANGDQSVHTA 553
+ G +G+F I G++ + K I + ++ + A ++ A G Q +
Sbjct: 263 ISGGDPTGRFAILTDPNSNDGLVTV-VKPIDFETNRMFVLTVAAENQVPLAKGIQHPPQS 321
Query: 554 TAVVVVFITDVNDNKPVFRECSTYYPKV---EEGAPNGSPVIKVHATDEDKGVNGQVKYS 610
TA V V + DVN+N P F PK+ EEG G+ + + A D D+ + ++Y+
Sbjct: 322 TATVSVTVIDVNEN-PYFAP----NPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYT 376
Query: 611 IVQQPNQKGAKFTVDEETGEVVTNKVFDREGDDGK--FVSVTIKATDQGEPSLEGVCSFT 668
+ P +D G++ T V DRE + K + T A+D G P + G +
Sbjct: 377 KLSDP---ANWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQ 433
Query: 669 VEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDADNNGA 715
+ + D+NDN P Q + + + N + ++A D D D N
Sbjct: 434 IYLLDINDNAP----QVLPQEAETCETPEPNSINITALDYDIDPNAG 476
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 65/135 (48%), Gaps = 21/135 (15%)
Query: 247 NDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKA 306
ND P+F QV+ +V E + P T V TV A D D N + +RY + +
Sbjct: 102 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNA----------LNGMLRYRILS 151
Query: 307 QGQGAGTFNI----GPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSG----GFSTSVE 358
Q + N+ T I+ +A LD E ++Q Y+LI+ AT+ G G S +
Sbjct: 152 QAPSTPSPNMFTINNETGDIITVAAGLDREKVQQ---YTLIIQATDMEGNPTYGLSNTAT 208
Query: 359 LTIRVTDVNDNAPKF 373
I VTDVNDN P+F
Sbjct: 209 AVITVTDVNDNPPEF 223
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 10/131 (7%)
Query: 290 VKAKSFADREIRYTLKAQGQGA-----GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIV 344
V+ +S D+ + G GA G F I P SG + + K LD E + + H+ + V
Sbjct: 22 VRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAV 81
Query: 345 TATEDSGGFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDAD-- 402
+ +++ I V D+NDN P+F L ++ E GT ++ V A DAD
Sbjct: 82 DI--NGNQVENPIDIVINVIDMNDNRPEF-LHQVWNGSVPEGSKPGTYVMTVTAIDADDP 138
Query: 403 SGTNAEIEYHV 413
+ N + Y +
Sbjct: 139 NALNGMLRYRI 149
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 116/274 (42%), Gaps = 54/274 (19%)
Query: 501 STSSGQFVIEDITGVIRLNSKSISLDRDK---YELNVTAVDDGACCANGDQSVHTATAVV 557
+ S F I + TG I + + LDR+K Y L + A D G +TATAV+
Sbjct: 156 TPSPNMFTINNETGDII--TVAAGLDREKVQQYTLIIQATDMEGNPTYGLS--NTATAVI 211
Query: 558 VVFITDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDK---------------G 602
V TDVNDN P F T+Y +V E N VI + T DK G
Sbjct: 212 TV--TDVNDNPPEF-TAMTFYGEVPE---NRVDVIVANLTVTDKDQPHTPAWNAAYRISG 265
Query: 603 VNGQVKYSIVQQPNQKGAKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLE 662
+ +++I+ PN TV + + TN++F +T+ A +Q P +
Sbjct: 266 GDPTGRFAILTDPNSNDGLVTVVKPI-DFETNRMF----------VLTVAAENQ-VPLAK 313
Query: 663 GV-------CSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDADNNGA 715
G+ + +V + DVN+NP K + ++ GT + ++A D D
Sbjct: 314 GIQHPPQSTATVSVTVIDVNENPYFAPNPKIIRQ-EEGLHAGTMLTTLTAQDPDRYMQQN 372
Query: 716 IVYT-LSAPYNQMDLEYFEIQPESGWIVLKKPLD 748
I YT LS P N + +I P +G I LD
Sbjct: 373 IRYTKLSDPAN-----WLKIDPVNGQITTIAVLD 401
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 83/207 (40%), Gaps = 45/207 (21%)
Query: 597 TDEDKGVNGQVKYSI----VQQPNQKGAKFTVDEETGEVVTNKVFDREGDDGKFVSVTIK 652
+D DK N ++YS+ QP F ++ +G++ K DRE +F +
Sbjct: 26 SDRDK--NLSLRYSVTGPGADQP--PTGIFIINPISGQLSVTKPLDRELI-ARF-HLRAH 79
Query: 653 ATDQGEPSLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDADN 712
A D +E + + D+NDN P F Q + +V + + GT ++ V+A D D N
Sbjct: 80 AVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPN 139
Query: 713 --NGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLDVYYYIVDSPRNEGKDFFEINLQ 770
NG + Y + + +P + F IN +
Sbjct: 140 ALNGMLRYRI--------------------------------LSQAPSTPSPNMFTINNE 167
Query: 771 SGEVFTKVV-FDREKQGAYALEVEARD 796
+G++ T DREK Y L ++A D
Sbjct: 168 TGDIITVAAGLDREKVQQYTLIIQATD 194
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 99/419 (23%), Positives = 163/419 (38%), Gaps = 103/419 (24%)
Query: 61 IIVVNWVIEQL-----LDRDVIN------HEVVHTDNQ-----RVIIHVKDVNDESPYFI 104
I ++N + QL LDR++I H V NQ ++I+V D+ND P F+
Sbjct: 50 IFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFL 109
Query: 105 NRPLPMQAVVQLNAPPNTPVFTLQARDPDSDHNIHYFIVRDR---------TGGRFEVDE 155
++ V + P T V T+ A D D D N ++R R + F ++
Sbjct: 110 HQV--WNGSVPEGSKPGTYVMTVTAIDAD-DPNALNGMLRYRILSQAPSTPSPNMFTINN 166
Query: 156 RSGVVRT--RGTDPFQLDQEYVLYVKAEDQNGRKDERKFQSTPEERLSIVGGKRAPQFYM 213
+G + T G D ++ Q+Y L ++A D G
Sbjct: 167 ETGDIITVAAGLDREKV-QQYTLIIQATDMEGN--------------------------- 198
Query: 214 PSYEAEIPENQKKDTEYPSMTGTATVRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVT 273
P+Y ++ TAT I + ND P+F+ + V EN + +V
Sbjct: 199 PTY---------------GLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRV-DVIVA 242
Query: 274 TVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGAGTFNI--GPTS--GIVKLAKEL 329
+ +DKD + A + A R + G G F I P S G+V + K +
Sbjct: 243 NLTVTDKDQPHT-----PAWNAAYR------ISGGDPTGRFAILTDPNSNDGLVTVVKPI 291
Query: 330 DFEDLRQPHVYSLIVTATEDSGGFSTSVE------LTIRVTDVNDNAPKFELPDYQAHNI 383
DFE R ++ A E+ + ++ T+ VT ++ N + P+ +
Sbjct: 292 DFETNRM----FVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNENPYFAPNPKIIRQ 347
Query: 384 DEDITTGTSILKVKATDADSGTNAEIEY-HVSD--DNFAVDS-NGVINNHKTLDADNNN 438
+E + GT + + A D D I Y +SD + +D NG I LD ++ N
Sbjct: 348 EEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQITTIAVLDRESPN 406
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 74/300 (24%), Positives = 107/300 (35%), Gaps = 81/300 (27%)
Query: 90 IIHVKDVNDESPYFINRP----LPMQAVVQLNAPPNTPVFTLQARDPDSDH----NIHYF 141
+I V DVND P F +P V + V L D D H N Y
Sbjct: 210 VITVTDVNDNPPEFTAMTFYGEVPENRVDVI-------VANLTVTDKDQPHTPAWNAAYR 262
Query: 142 IVRDRTGGRFEV----DERSGVVRTRGTDPFQLDQEYVLYVKAEDQNGRKDERKFQSTPE 197
I GRF + + G+V F+ ++ +VL V AE+Q
Sbjct: 263 ISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLTVAAENQ-------------- 308
Query: 198 ERLSIVGGKRAPQFYMPSYEAEIPENQKKDTEYPSMTGTATVRIYTKNKNDEEPKFSQQV 257
+ + G + P P T T +V + N+N P F+
Sbjct: 309 --VPLAKGIQHP---------------------PQSTATVSVTVIDVNEN---PYFAPNP 342
Query: 258 YTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGAGTFNIG 317
+E T++TT+ A D D + + IRYT A I
Sbjct: 343 KIIRQEEGLHAGTMLTTLTAQDPD------------RYMQQNIRYT--KLSDPANWLKID 388
Query: 318 PTSGIVKLAKELDFEDLRQPHVYSLIVTAT---EDSG--GFSTSVELTIRVTDVNDNAPK 372
P +G + LD E P+V + I AT D+G S + L I + D+NDNAP+
Sbjct: 389 PVNGQITTIAVLDRE---SPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQ 445
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 77/198 (38%), Gaps = 63/198 (31%)
Query: 89 VIIHVKDVNDESPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDS--DHNIHYFIVRDR 146
V + V DVN E+PYF P ++ L+A T + TL A+DPD NI Y + D
Sbjct: 325 VSVTVIDVN-ENPYFAPNPKIIRQEEGLHA--GTMLTTLTAQDPDRYMQQNIRYTKLSD- 380
Query: 147 TGGRFEVDERSGVVRTRGTDPFQLDQEYVLYVKAEDQNGRKDERKFQSTPEERLSIVGGK 206
++D +G + T LD+E +P + +I
Sbjct: 381 PANWLKIDPVNGQITTIAV----LDRE---------------------SPNVKNNI---- 411
Query: 207 RAPQFYMPSYEAEIPENQKKDTEYPSMTGTATVRIYTKNKNDEEPKFSQQ----VYTP-- 260
Y ++ A D P M+GT T++IY + ND P+ Q TP
Sbjct: 412 -----YNATFLA-------SDNGIPPMSGTGTLQIYLLDINDNAPQVLPQEAETCETPEP 459
Query: 261 ----------NVDENAGP 268
++D NAGP
Sbjct: 460 NSINITALDYDIDPNAGP 477
>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium
pdb|1EDH|B Chain B, E-Cadherin Domains 1 And 2 In Complex With Calcium
Length = 226
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 96/188 (51%), Gaps = 24/188 (12%)
Query: 505 GQFVIEDITGVIRLNSKSISLDRD---KYELNVTAVDDGACCANGDQSVHTATAVVVVFI 561
G F+IE TG +++ LDR+ KY L AV +NG ++V +V+ +
Sbjct: 51 GVFIIERETGWLKVTQP---LDREAIAKYILYSHAV-----SSNG-EAVEDPMEIVIT-V 100
Query: 562 TDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGVN---GQVKYSIVQQPNQK 618
TD NDN+P F + + V EGA G+ V+KV ATD D VN + Y+IV Q +
Sbjct: 101 TDQNDNRPEFTQ-EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPEL 159
Query: 619 GAK--FTVDEETGEV-VTNKVFDREGDDGKFVSVTIKATD-QGEPSLEGVCSFTVEITDV 674
K FTV+ +TG + V DRE ++ ++A D QGE L + + D+
Sbjct: 160 PHKNMFTVNRDTGVISVLTSGLDRES--YPTYTLVVQAADLQGE-GLSTTAKAVITVKDI 216
Query: 675 NDNPPLFD 682
NDN P+F+
Sbjct: 217 NDNAPVFN 224
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 11/132 (8%)
Query: 290 VKAKSFADREIRYTLKAQGQGA-----GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIV 344
V+ KS D+E + GQGA G F I +G +K+ + LD E + + +YS V
Sbjct: 24 VQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV 83
Query: 345 TATEDSGGFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSG 404
++ ++ +E+ I VTD NDN P+F ++ ++ E GTS++KV ATDAD
Sbjct: 84 SSNGEA--VEDPMEIVITVTDQNDNRPEFTQEVFEG-SVAEGAVPGTSVMKVSATDADDD 140
Query: 405 T---NAEIEYHV 413
NA I Y +
Sbjct: 141 VNTYNAAIAYTI 152
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 69/140 (49%), Gaps = 17/140 (12%)
Query: 239 VRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADR 298
+ I ++ND P+F+Q+V+ +V E A P T V V A+D D D V + A
Sbjct: 96 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDD------VNTYNAA-- 147
Query: 299 EIRYTLKAQG---QGAGTFNIGPTSGIVK-LAKELDFEDLRQPHVYSLIVTATEDSG-GF 353
I YT+ +Q F + +G++ L LD E Y+L+V A + G G
Sbjct: 148 -IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESY---PTYTLVVQAADLQGEGL 203
Query: 354 STSVELTIRVTDVNDNAPKF 373
ST+ + I V D+NDNAP F
Sbjct: 204 STTAKAVITVKDINDNAPVF 223
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 17/158 (10%)
Query: 606 QVKYSIVQQPNQKG--AKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEG 663
+V YSI Q K F ++ ETG + + DRE K++ + + GE ++E
Sbjct: 35 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAI-AKYILYSHAVSSNGE-AVED 92
Query: 664 VCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDAD---NNGAIVYTL 720
+ +TD NDN P F ++ + +V + A GT++++VSA+D D D N AI YT+
Sbjct: 93 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 152
Query: 721 SA-----PYNQMDLEYFEIQPESGWI-VLKKPLDVYYY 752
+ P+ M F + ++G I VL LD Y
Sbjct: 153 VSQDPELPHKNM----FTVNRDTGVISVLTSGLDRESY 186
>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2
Length = 215
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 19/171 (11%)
Query: 582 EEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTNKVFDREG 641
E P+ V ++H +D D G +G +KY + G F +D+++G + K DRE
Sbjct: 13 EYTGPDPVLVGRLH-SDIDSG-DGNIKY--ILSGEGAGTIFVIDDKSGNIHATKTLDREE 68
Query: 642 DDGKFVSVTIKATDQGEPSLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNIL 701
+ D P LE F V++ D+NDNPP F + Y NV + +++GT+++
Sbjct: 69 RAQYTLMAQAVDRDTNRP-LEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVI 127
Query: 702 RVSASDED---ADNNGAIVYTLSAPYNQMDLE---YFEIQPESGWIVLKKP 746
+V+ASD D N+ +VY++ LE YF ++ ++G I P
Sbjct: 128 QVTASDADDPTYGNSAKLVYSI--------LEGQPYFSVEAQTGIIRTALP 170
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 25/158 (15%)
Query: 262 VDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGAGT-FNIGPTS 320
++E GP+ ++ + SD D D I+Y L G+GAGT F I S
Sbjct: 11 IEEYTGPDPVLVGRLHSDIDS-------------GDGNIKYILS--GEGAGTIFVIDDKS 55
Query: 321 GIVKLAKELDFEDLRQPHVYSLIVTATEDSGG--FSTSVELTIRVTDVNDNAPKFELPDY 378
G + K LD E+ Q Y+L+ A + E ++V D+NDN P+F Y
Sbjct: 56 GNIHATKTLDREERAQ---YTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIY 112
Query: 379 QAHNIDEDITTGTSILKVKATDADS---GTNAEIEYHV 413
A N+ E GTS+++V A+DAD G +A++ Y +
Sbjct: 113 HA-NVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSI 149
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 83/182 (45%), Gaps = 17/182 (9%)
Query: 497 FVGGSTSSGQFVIEDITGVIRLNSKSISLDRDKYELNVTAVDDGACCANGDQSVHTATAV 556
+ G + FVI+D +G I +R +Y L AVD + ++ + +
Sbjct: 39 ILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVD-----RDTNRPLEPPSEF 93
Query: 557 VVVFITDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDK---GVNGQVKYSIVQ 613
+V + D+NDN P F Y+ V E + G+ VI+V A+D D G + ++ YSI++
Sbjct: 94 IVK-VQDINDNPPEFLH-EIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILE 151
Query: 614 -QPNQKGAKFTVDEETGEVVTNKV-FDREGDDGKFVSVTIKATDQGEPSLEGVCSFTVEI 671
QP F+V+ +TG + T DRE + V + K L G T+ +
Sbjct: 152 GQP-----YFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITL 206
Query: 672 TD 673
TD
Sbjct: 207 TD 208
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 13/120 (10%)
Query: 247 NDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKA 306
ND P+F ++Y NV E + T V V ASD D + S + + ++++A
Sbjct: 101 NDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQPYFSVEA 160
Query: 307 QGQGAGTFNIGPTSGIVKLA-KELDFEDLRQPHVYSLIVTATEDSGGFSTSVELTIRVTD 365
Q +GI++ A +D E + HV GG S + ++TI +TD
Sbjct: 161 Q------------TGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTD 208
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 14/117 (11%)
Query: 134 SDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDPFQLDQEYVLYVKAEDQNGRKDERKFQ 193
D NI Y + + G F +D++SG + T + +Y L +A D +D +
Sbjct: 32 GDGNIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVD----RDTNRPL 87
Query: 194 STPEERLSIVG--GKRAPQFYMPSYEAEIPENQKKDTEYPSMTGTATVRIYTKNKND 248
P E + V P+F Y A +PE S GT+ +++ + +D
Sbjct: 88 EPPSEFIVKVQDINDNPPEFLHEIYHANVPER--------SNVGTSVIQVTASDADD 136
>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|B Chain B, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|C Chain C, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|D Chain D, Crystal Structure Of Cadherin-6 Ec12 W4a
Length = 207
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 17/156 (10%)
Query: 591 VIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTNKVFDREGDDGKFVSVT 650
V K+H+ D+D+G +G +KY + + G F ++E TG++ K DRE +
Sbjct: 21 VGKLHS-DQDRG-DGSLKY--ILSGDGAGDLFIINENTGDIQATKRLDREEKPVYILRAQ 76
Query: 651 IKATDQGEPSLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDED- 709
G P +E F ++I D+NDN P+F + Y V + A +GT +++V+A+D D
Sbjct: 77 AVNRRTGRP-VEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADD 135
Query: 710 --ADNNGAIVYTL--SAPYNQMDLEYFEIQPESGWI 741
N+ +VY++ P YF ++ E+G I
Sbjct: 136 PTYGNSAKVVYSILQGQP-------YFSVESETGII 164
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 13/122 (10%)
Query: 558 VVFITDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDK---GVNGQVKYSIVQ- 613
++ I D+NDN+P+F + Y V E A G+ V++V ATD D G + +V YSI+Q
Sbjct: 93 IIKIHDINDNEPIFTK-DVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQG 151
Query: 614 QPNQKGAKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEP--SLEGVCSFTVEI 671
QP F+V+ ETG ++ + + + ++ + V I+A D G L G + + +
Sbjct: 152 QP-----YFSVESETG-IIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITL 205
Query: 672 TD 673
TD
Sbjct: 206 TD 207
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/161 (32%), Positives = 75/161 (46%), Gaps = 15/161 (9%)
Query: 296 ADREIRYTLKAQGQGAG-TFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGG-- 352
D ++Y L G GAG F I +G ++ K LD E+ +P VY L A G
Sbjct: 31 GDGSLKYILS--GDGAGDLFIINENTGDIQATKRLDREE--KP-VYILRAQAVNRRTGRP 85
Query: 353 FSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADS---GTNAEI 409
E I++ D+NDN P F Y A + E GT +++V ATDAD G +A++
Sbjct: 86 VEPESEFIIKIHDINDNEPIFTKDVYTA-TVPEMADVGTFVVQVTATDADDPTYGNSAKV 144
Query: 410 EYHVSDDN--FAVDSNGVINNHKTLDADN-NNAYYEFVITA 447
Y + F+V+S I L+ D N Y+ VI A
Sbjct: 145 VYSILQGQPYFSVESETGIIKTALLNMDRENREQYQVVIQA 185
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 27/127 (21%)
Query: 247 NDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKD----GDNVSIISVKAKSFADREIRY 302
ND EP F++ VYT V E A T V V A+D D G++ ++ Y
Sbjct: 100 NDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVV-------------Y 146
Query: 303 TLKAQGQGAGTFNIGPTSGIVKLA-KELDFEDLRQPHVYSLIVTATE---DSGGFSTSVE 358
++ QG F++ +GI+K A +D E+ Q Y +++ A + GG S +
Sbjct: 147 SIL---QGQPYFSVESETGIIKTALLNMDRENREQ---YQVVIQAKDMGGQMGGLSGTTT 200
Query: 359 LTIRVTD 365
+ I +TD
Sbjct: 201 VNITLTD 207
>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
pdb|3K5R|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
Length = 218
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 88/188 (46%), Gaps = 26/188 (13%)
Query: 504 SGQFVIEDITGVIRLN------SKSISLDRDK---YELNVTAVDDGACCANGDQSVHTAT 554
+G+ V +D G R+N S + +LDR+ Y+L V D G +
Sbjct: 39 TGKGVDQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGKTLEGPVPLE--- 95
Query: 555 AVVVVFITDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGV--NGQVKYSIV 612
V + D NDN+P+FRE Y V EG+P G+ V+++ A D D N ++Y+I
Sbjct: 96 ----VIVIDQNDNRPIFREGP-YIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIR 150
Query: 613 QQPNQKGAK--FTVDEETGEVVT---NKVFDREGDDGKFVSVTIKATDQG--EPSLEGVC 665
QQ K + F +D E G++VT + DRE + + I+A D + L G
Sbjct: 151 QQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTA 210
Query: 666 SFTVEITD 673
+ T+ I D
Sbjct: 211 TATIVIDD 218
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 74/159 (46%), Gaps = 15/159 (9%)
Query: 591 VIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTNKVFDREGDDGKFVSVT 650
V KV +D +G ++ V Q + KG F ++E TG V + DRE +
Sbjct: 22 VGKVVDSDRPEGSKFRLTGKGVDQ-DPKGT-FRINENTGSVSVTRTLDRETI--ATYQLY 77
Query: 651 IKATDQGEPSLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDED- 709
++ TD +LEG V + D NDN P+F Y+ +V + + GT ++R++A D D
Sbjct: 78 VETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADD 137
Query: 710 -ADNNGAIVY-----TLSAPYNQMDLEYFEIQPESGWIV 742
A +N + Y T P M F I PE G IV
Sbjct: 138 PATDNALLRYNIRQQTPDKPSPNM----FYIDPEKGDIV 172
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 12/126 (9%)
Query: 296 ADREIRYTLKAQGQGA-----GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDS 350
+DR + G+G GTF I +G V + + LD E + Y L V T+ S
Sbjct: 28 SDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRETI---ATYQLYVETTDAS 84
Query: 351 GG-FSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDAD--SGTNA 407
G V L + V D NDN P F Y H + E TGT+++++ A DAD + NA
Sbjct: 85 GKTLEGPVPLEVIVIDQNDNRPIFREGPYIGH-VMEGSPTGTTVMRMTAFDADDPATDNA 143
Query: 408 EIEYHV 413
+ Y++
Sbjct: 144 LLRYNI 149
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
pdb|3K5S|B Chain B, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
Length = 217
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 91/188 (48%), Gaps = 26/188 (13%)
Query: 504 SGQFVIEDITGVIRLN------SKSISLDRDK---YELNVTAVDDGACCANGDQSVHTAT 554
SG+ V +D G+ R+N S + LDR+ Y+L V D +G +
Sbjct: 38 SGKGVDQDPKGIFRINEISGDVSVTRPLDREAIANYQLEVEVTDLSGKIIDGPVRLD--- 94
Query: 555 AVVVVFITDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGV--NGQVKYSIV 612
+ + D NDN+P+F+E Y V EG+P G+ V+++ A D D N ++Y+I+
Sbjct: 95 ----ISVIDQNDNRPMFKE-GPYVGHVMEGSPTGTTVMRMTAFDADDPSTDNALLRYNIL 149
Query: 613 QQPNQKGAK--FTVDEETGEVVT---NKVFDREGDDGKFVSVTIKATDQG--EPSLEGVC 665
+Q K + F +D E G++VT + DRE + + I+A D G + L G
Sbjct: 150 KQTPTKPSPNMFYIDPEKGDIVTVVSPVLLDRETMETPKYELVIEAKDMGGHDVGLTGTA 209
Query: 666 SFTVEITD 673
+ T+ I D
Sbjct: 210 TATILIDD 217
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 13/128 (10%)
Query: 622 FTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEGVCSFTVEITDVNDNPPLF 681
F ++E +G+V + DRE + ++ TD ++G + + D NDN P+F
Sbjct: 50 FRINEISGDVSVTRPLDREAIAN--YQLEVEVTDLSGKIIDGPVRLDISVIDQNDNRPMF 107
Query: 682 DRQKYVENVKQDASIGTNILRVSASDED--ADNNGAIVY-----TLSAPYNQMDLEYFEI 734
YV +V + + GT ++R++A D D + +N + Y T + P M F I
Sbjct: 108 KEGPYVGHVMEGSPTGTTVMRMTAFDADDPSTDNALLRYNILKQTPTKPSPNM----FYI 163
Query: 735 QPESGWIV 742
PE G IV
Sbjct: 164 DPEKGDIV 171
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 312 GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGF-STSVELTIRVTDVNDNA 370
G F I SG V + + LD E + Y L V T+ SG V L I V D NDN
Sbjct: 48 GIFRINEISGDVSVTRPLDREAIAN---YQLEVEVTDLSGKIIDGPVRLDISVIDQNDNR 104
Query: 371 PKFELPDYQAHNIDEDITTGTSILKVKATDAD--SGTNAEIEYHV 413
P F+ Y H + E TGT+++++ A DAD S NA + Y++
Sbjct: 105 PMFKEGPYVGH-VMEGSPTGTTVMRMTAFDADDPSTDNALLRYNI 148
>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain
pdb|1FF5|B Chain B, Structure Of E-Cadherin Double Domain
Length = 219
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 92/183 (50%), Gaps = 24/183 (13%)
Query: 505 GQFVIEDITGVIRLNSKSISLDRD---KYELNVTAVDDGACCANGDQSVHTATAVVVVFI 561
G F+IE TG +++ LDR+ KY L AV +NG ++V +V+ +
Sbjct: 50 GVFIIERETGWLKVTQP---LDREAIAKYILYSHAV-----SSNG-EAVEDPMEIVIT-V 99
Query: 562 TDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGV---NGQVKYSIVQQPNQK 618
TD NDN+P F + + V EGA G+ V+KV ATD D V N + Y+IV Q +
Sbjct: 100 TDQNDNRPEFTQ-EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPEL 158
Query: 619 GAK--FTVDEETGEV-VTNKVFDREGDDGKFVSVTIKATD-QGEPSLEGVCSFTVEITDV 674
K FTV+ +TG + V DRE ++ ++A D QGE L + + D+
Sbjct: 159 PHKNMFTVNRDTGVISVLTSGLDRES--YPTYTLVVQAADLQGE-GLSTTAKAVITVKDI 215
Query: 675 NDN 677
NDN
Sbjct: 216 NDN 218
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 11/132 (8%)
Query: 290 VKAKSFADREIRYTLKAQGQGA-----GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIV 344
V+ KS D+E + GQGA G F I +G +K+ + LD E + + +YS V
Sbjct: 23 VQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV 82
Query: 345 TATEDSGGFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSG 404
++ ++ +E+ I VTD NDN P+F ++ ++ E GTS++KV ATDAD
Sbjct: 83 SSNGEA--VEDPMEIVITVTDQNDNRPEFTQEVFEG-SVAEGAVPGTSVMKVSATDADDD 139
Query: 405 T---NAEIEYHV 413
NA I Y +
Sbjct: 140 VNTYNAAIAYTI 151
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 17/158 (10%)
Query: 606 QVKYSIVQQPNQKG--AKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEG 663
+V YSI Q K F ++ ETG + + DRE K++ + + GE ++E
Sbjct: 34 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAI-AKYILYSHAVSSNGE-AVED 91
Query: 664 VCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDAD---NNGAIVYTL 720
+ +TD NDN P F ++ + +V + A GT++++VSA+D D D N AI YT+
Sbjct: 92 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 151
Query: 721 SA-----PYNQMDLEYFEIQPESGWI-VLKKPLDVYYY 752
+ P+ M F + ++G I VL LD Y
Sbjct: 152 VSQDPELPHKNM----FTVNRDTGVISVLTSGLDRESY 185
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 67/137 (48%), Gaps = 17/137 (12%)
Query: 239 VRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADR 298
+ I ++ND P+F+Q+V+ +V E A P T V V A+D D D V + A
Sbjct: 95 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDD------VNTYNAA-- 146
Query: 299 EIRYTLKAQG---QGAGTFNIGPTSGIVK-LAKELDFEDLRQPHVYSLIVTATEDSG-GF 353
I YT+ +Q F + +G++ L LD E Y+L+V A + G G
Sbjct: 147 -IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESY---PTYTLVVQAADLQGEGL 202
Query: 354 STSVELTIRVTDVNDNA 370
ST+ + I V D+NDNA
Sbjct: 203 STTAKAVITVKDINDNA 219
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment
Length = 215
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/181 (30%), Positives = 93/181 (51%), Gaps = 24/181 (13%)
Query: 504 SGQFVIEDITGVIRLNSKSISLDRD---KYELNVTAVDDGACCANGDQSVHTATAVVVVF 560
+G F+I I+G + S + LDR+ ++ L AVD NG+Q + +V+
Sbjct: 48 TGIFIINPISGQL---SVTKPLDRELIARFHLRAHAVD-----INGNQVENPID--IVIN 97
Query: 561 ITDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDED--KGVNGQVKYSIVQQPNQK 618
+ D+NDN+P F + V EG+ G+ V+ V A D D +NG ++Y IV Q
Sbjct: 98 VIDMNDNRPEFLH-QVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPST 156
Query: 619 GAK--FTVDEETGEVVTNKV-FDREGDDGKFVSVTIKATD-QGEPS--LEGVCSFTVEIT 672
+ FT++ ETG+++T DRE + ++ I+ATD +G P+ L + + +T
Sbjct: 157 PSPNMFTINNETGDIITVAAGLDRE--KVQQYTLIIQATDMEGNPTYGLSNTATAVITVT 214
Query: 673 D 673
D
Sbjct: 215 D 215
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 21/127 (16%)
Query: 247 NDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKA 306
ND P+F QV+ +V E + P T V TV A D D N + +RY + +
Sbjct: 102 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNA----------LNGMLRYRIVS 151
Query: 307 QGQGAGTFNI----GPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSG----GFSTSVE 358
Q + N+ T I+ +A LD E ++Q Y+LI+ AT+ G G S +
Sbjct: 152 QAPSTPSPNMFTINNETGDIITVAAGLDREKVQQ---YTLIIQATDMEGNPTYGLSNTAT 208
Query: 359 LTIRVTD 365
I VTD
Sbjct: 209 AVITVTD 215
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 10/131 (7%)
Query: 290 VKAKSFADREIRYTLKAQGQGA-----GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIV 344
V+ +S D+ + G GA G F I P SG + + K LD E + + H+ + V
Sbjct: 22 VRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAV 81
Query: 345 TATEDSGGFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDAD-- 402
+ +++ I V D+NDN P+F L ++ E GT ++ V A DAD
Sbjct: 82 DINGNQ--VENPIDIVINVIDMNDNRPEF-LHQVWNGSVPEGSKPGTYVMTVTAIDADDP 138
Query: 403 SGTNAEIEYHV 413
+ N + Y +
Sbjct: 139 NALNGMLRYRI 149
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 83/207 (40%), Gaps = 45/207 (21%)
Query: 597 TDEDKGVNGQVKYSI----VQQPNQKGAKFTVDEETGEVVTNKVFDREGDDGKFVSVTIK 652
+D DK N ++YS+ QP F ++ +G++ K DRE +F +
Sbjct: 26 SDRDK--NLSLRYSVTGPGADQP--PTGIFIINPISGQLSVTKPLDRELI-ARF-HLRAH 79
Query: 653 ATDQGEPSLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDADN 712
A D +E + + D+NDN P F Q + +V + + GT ++ V+A D D N
Sbjct: 80 AVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPN 139
Query: 713 --NGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLDVYYYIVDSPRNEGKDFFEINLQ 770
NG + Y + + +P + F IN +
Sbjct: 140 ALNGMLRYRI--------------------------------VSQAPSTPSPNMFTINNE 167
Query: 771 SGEVFTKVV-FDREKQGAYALEVEARD 796
+G++ T DREK Y L ++A D
Sbjct: 168 TGDIITVAAGLDREKVQQYTLIIQATD 194
>pdb|2YST|A Chain A, Solution Structure Of The Third Cadherin Domain From Human
Protocadherin 7
Length = 119
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Query: 565 NDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTV 624
NDN P F E S Y + E + G+P++++ A D D GVNGQ++Y +
Sbjct: 8 NDNSPRF-EKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRL 66
Query: 625 DEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEGVCSFTVEITDVNDNPP 679
DE +G + DRE + + T+ A D+G+P + + I D NDN P
Sbjct: 67 DETSGWLSVLHRIDRE--EVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 367 NDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSGTNAEIEY 411
NDN+P+FE Y+A ++ E+ GT IL+++A D D G N +IEY
Sbjct: 8 NDNSPRFEKSVYEA-DLAENSAPGTPILQLRAADLDVGVNGQIEY 51
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 675 NDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEI 734
NDN P F++ Y ++ ++++ GT IL++ A+D D NG I Y A + +
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR-RLLRL 66
Query: 735 QPESGWIVLKKPLD 748
SGW+ + +D
Sbjct: 67 DETSGWLSVLHRID 80
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 15/126 (11%)
Query: 247 NDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKA 306
ND P+F + VY ++ EN+ P T + + A+D D + V +I Y A
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLD------VGVNG------QIEYVFGA 55
Query: 307 QGQGA-GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVELTIRVTD 365
+ + TSG + + +D E++ Q + + +V L I+ D
Sbjct: 56 ATESVRRLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRGQPPKTDKATVVLNIK--D 113
Query: 366 VNDNAP 371
NDN P
Sbjct: 114 ENDNVP 119
>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a
pdb|3LNI|B Chain B, Crystal Structure Of E-Cadherin Ec12 E89a
Length = 213
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 70/132 (53%), Gaps = 11/132 (8%)
Query: 290 VKAKSFADREIRYTLKAQGQGA-----GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIV 344
V+ KS D+E + GQGA G F I +G +K+ + LD E + + +YS V
Sbjct: 22 VQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV 81
Query: 345 TATEDSGGFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSG 404
++ ++ + +E+ I VTD NDN P+F ++ ++ E GTS++KV ATDAD
Sbjct: 82 SSNGEA--VADPMEIVITVTDQNDNRPEFTQEVFEG-SVAEGAVPGTSVMKVSATDADDD 138
Query: 405 T---NAEIEYHV 413
NA I Y +
Sbjct: 139 VNTYNAAIAYTI 150
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 73/145 (50%), Gaps = 20/145 (13%)
Query: 505 GQFVIEDITGVIRLNSKSISLDRD---KYELNVTAVDDGACCANGDQSVHTATAVVVVFI 561
G F+IE TG +++ LDR+ KY L AV +NG+ +V+ +
Sbjct: 49 GVFIIERETGWLKVTQP---LDREAIAKYILYSHAV-----SSNGEAVADPME--IVITV 98
Query: 562 TDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGV---NGQVKYSIVQQPNQK 618
TD NDN+P F + + V EGA G+ V+KV ATD D V N + Y+IV Q +
Sbjct: 99 TDQNDNRPEFTQ-EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPEL 157
Query: 619 GAK--FTVDEETGEV-VTNKVFDRE 640
K FTV+ +TG + V DRE
Sbjct: 158 PHKNMFTVNRDTGVISVLTSGLDRE 182
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 17/158 (10%)
Query: 606 QVKYSIVQQPNQKG--AKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEG 663
+V YSI Q K F ++ ETG + + DRE K++ + + GE ++
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAI-AKYILYSHAVSSNGE-AVAD 90
Query: 664 VCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDAD---NNGAIVYTL 720
+ +TD NDN P F ++ + +V + A GT++++VSA+D D D N AI YT+
Sbjct: 91 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 721 SA-----PYNQMDLEYFEIQPESGWI-VLKKPLDVYYY 752
+ P+ M F + ++G I VL LD Y
Sbjct: 151 VSQDPELPHKNM----FTVNRDTGVISVLTSGLDRESY 184
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 17/132 (12%)
Query: 239 VRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADR 298
+ I ++ND P+F+Q+V+ +V E A P T V V A+D D D + +
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDD---------VNTYNA 144
Query: 299 EIRYTLKAQG---QGAGTFNIGPTSGIVK-LAKELDFEDLRQPHVYSLIVTATEDSG-GF 353
I YT+ +Q F + +G++ L LD E Y+L+V A + G G
Sbjct: 145 AIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESY---PTYTLVVQAADLQGEGL 201
Query: 354 STSVELTIRVTD 365
ST+ + I V D
Sbjct: 202 STTAKAVITVKD 213
>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 81/174 (46%), Gaps = 21/174 (12%)
Query: 578 YPKVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAKF-TVDEETGEVVTNKV 636
Y + E P GS V ++ A D D N + + + P ++ ++F V+ +TG V +
Sbjct: 17 YLLISEDTPVGSSVTQLLARDMD---NDPLVFGV---PGEEASRFFAVEPDTGVVWLRQP 70
Query: 637 FDREGDDGKFVSVTIKATDQGEPSLEGVCS--FTVEITDVNDNPPLFDRQKYVENVKQDA 694
DRE +V +D +GV + +++ DVNDN P F Q Y + ++
Sbjct: 71 LDRETKSE--FTVEFSVSDH-----QGVITRKVNIQVGDVNDNAPTFHNQPYSVRIPENT 123
Query: 695 SIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLD 748
+GT I V+A+D D G+++Y+ P +F I G + + + LD
Sbjct: 124 PVGTPIFIVNATDPDLGAGGSVLYSFQPPS-----PFFAIDSARGIVTVIQELD 172
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 81/182 (44%), Gaps = 21/182 (11%)
Query: 495 FGFVGGSTSSGQFVIEDITGVIRLNSKSISLDRD-KYELNVTAVDDGACCANGDQSVHTA 553
FG V G +S F +E TGV+ L LDR+ K E V + Q V T
Sbjct: 45 FG-VPGEEASRFFAVEPDTGVVWLRQP---LDRETKSEFTV------EFSVSDHQGVITR 94
Query: 554 TAVVVVFITDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQ 613
V + + DVNDN P F Y ++ E P G+P+ V+ATD D G G V YS
Sbjct: 95 K--VNIQVGDVNDNAPTFHN-QPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSF-- 149
Query: 614 QPNQKGAKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEP-SLEGVCSFTVEIT 672
QP F +D G V + D E +T+ ATDQ + L + + + IT
Sbjct: 150 QP--PSPFFAIDSARGIVTVIQELDYEVTQAY--QLTVNATDQDKTRPLSTLANLAIIIT 205
Query: 673 DV 674
D+
Sbjct: 206 DL 207
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 9/130 (6%)
Query: 314 FNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVELTIRVTDVNDNAPKF 373
F + P +G+V L + LD E + +++ + ++ G + V I+V DVNDNAP F
Sbjct: 56 FAVEPDTGVVWLRQPLDRETKSE---FTVEFSVSDHQGVITRKVN--IQVGDVNDNAPTF 110
Query: 374 ELPDYQAHNIDEDITTGTSILKVKATDADSGTNAEIEYHVSDDN--FAVDS-NGVINNHK 430
Y I E+ GT I V ATD D G + Y + FA+DS G++ +
Sbjct: 111 HNQPYSVR-IPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQ 169
Query: 431 TLDADNNNAY 440
LD + AY
Sbjct: 170 ELDYEVTQAY 179
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 11/132 (8%)
Query: 64 VNWVIEQLLDRDVINHEVVH---TDNQRVI-----IHVKDVNDESPYFINRPLPMQAVVQ 115
V W + Q LDR+ + V +D+Q VI I V DVND +P F N+P ++ +
Sbjct: 64 VVW-LRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVR--IP 120
Query: 116 LNAPPNTPVFTLQARDPDSDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDPFQLDQEYV 175
N P TP+F + A DPD F +D G+V +++ Q Y
Sbjct: 121 ENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEVTQAYQ 180
Query: 176 LYVKAEDQNGRK 187
L V A DQ+ +
Sbjct: 181 LTVNATDQDKTR 192
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 20/133 (15%)
Query: 236 TATVRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSF 295
T V I + ND P F Q Y+ + EN T + V A+D D
Sbjct: 93 TRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLG------------ 140
Query: 296 ADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATED--SGGF 353
A + Y+ + + F I GIV + +ELD+E + Y L V AT+ +
Sbjct: 141 AGGSVLYSFQPP---SPFFAIDSARGIVTVIQELDYEVTQ---AYQLTVNATDQDKTRPL 194
Query: 354 STSVELTIRVTDV 366
ST L I +TD+
Sbjct: 195 STLANLAIIITDL 207
>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23
Length = 210
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 82/184 (44%), Gaps = 21/184 (11%)
Query: 495 FGFVGGSTSSGQFVIEDITGVIRLNSKSISLDRD-KYELNVTAVDDGACCANGDQSVHTA 553
FG V G +S F +E TGV+ L LDR+ K E V + Q V
Sbjct: 44 FG-VSGEEASRFFAVEPDTGVVWLRQP---LDRETKSEFTV------EFSVSDHQGV--I 91
Query: 554 TAVVVVFITDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQ 613
T V + + DVNDN P F Y ++ E P G+P+ V+ATD D G G V YS
Sbjct: 92 TRKVNIQVGDVNDNAPTFHN-QPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSF-- 148
Query: 614 QPNQKGAKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEP-SLEGVCSFTVEIT 672
QP F +D G V + D E +T+ ATDQ + L + + + IT
Sbjct: 149 QP--PSPFFAIDSARGIVTVIQELDYEVTQAY--QLTVNATDQDKTRPLSTLANLAIIIT 204
Query: 673 DVND 676
D+ D
Sbjct: 205 DMQD 208
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 29/178 (16%)
Query: 578 YPKVEEGAPNGSPVIKVHATDEDK-----GVNGQVKYSIVQQPNQKGAKFTVDEETGEVV 632
Y + E P GS V ++ A D D GV+G+ + F V+ +TG V
Sbjct: 16 YLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGE----------EASRFFAVEPDTGVVW 65
Query: 633 TNKVFDREGDDGKFVSVTIKATDQGEPSLEGVCS--FTVEITDVNDNPPLFDRQKYVENV 690
+ DRE +F +V +D +GV + +++ DVNDN P F Q Y +
Sbjct: 66 LRQPLDRETK-SEF-TVEFSVSDH-----QGVITRKVNIQVGDVNDNAPTFHNQPYSVRI 118
Query: 691 KQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLD 748
++ +GT I V+A+D D G+++Y+ P +F I G + + + LD
Sbjct: 119 PENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPS-----PFFAIDSARGIVTVIQELD 171
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 9/130 (6%)
Query: 314 FNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVELTIRVTDVNDNAPKF 373
F + P +G+V L + LD E + +++ + ++ G + V I+V DVNDNAP F
Sbjct: 55 FAVEPDTGVVWLRQPLDRETKSE---FTVEFSVSDHQGVITRKVN--IQVGDVNDNAPTF 109
Query: 374 ELPDYQAHNIDEDITTGTSILKVKATDADSGTNAEIEYHVSDDN--FAVDS-NGVINNHK 430
Y I E+ GT I V ATD D G + Y + FA+DS G++ +
Sbjct: 110 HNQPYSVR-IPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQ 168
Query: 431 TLDADNNNAY 440
LD + AY
Sbjct: 169 ELDYEVTQAY 178
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 11/132 (8%)
Query: 64 VNWVIEQLLDRDVINHEVVH---TDNQRVI-----IHVKDVNDESPYFINRPLPMQAVVQ 115
V W + Q LDR+ + V +D+Q VI I V DVND +P F N+P ++ +
Sbjct: 63 VVW-LRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVR--IP 119
Query: 116 LNAPPNTPVFTLQARDPDSDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDPFQLDQEYV 175
N P TP+F + A DPD F +D G+V +++ Q Y
Sbjct: 120 ENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEVTQAYQ 179
Query: 176 LYVKAEDQNGRK 187
L V A DQ+ +
Sbjct: 180 LTVNATDQDKTR 191
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 20/135 (14%)
Query: 236 TATVRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSF 295
T V I + ND P F Q Y+ + EN T + V A+D D
Sbjct: 92 TRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLG------------ 139
Query: 296 ADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATED--SGGF 353
A + Y+ + + F I GIV + +ELD+E + Y L V AT+ +
Sbjct: 140 AGGSVLYSFQPP---SPFFAIDSARGIVTVIQELDYEVTQ---AYQLTVNATDQDKTRPL 193
Query: 354 STSVELTIRVTDVND 368
ST L I +TD+ D
Sbjct: 194 STLANLAIIITDMQD 208
>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human
Protocadherin 9
Length = 114
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 59/113 (52%), Gaps = 8/113 (7%)
Query: 565 NDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQ--PNQKGAKF 622
NDN+PVF+E + E AP G+ VI++HATD D G N +++Y Q P K F
Sbjct: 8 NDNRPVFKEGQVEV-HIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK-RLF 65
Query: 623 TVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEGVCSFTVEITDVN 675
++ TG + + DRE + VT+ A+D S + T+ +TDVN
Sbjct: 66 ALNNTTGLITVQRSLDRE--ETAIHKVTVLASDGS--STPARATVTINVTDVN 114
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 39/74 (52%)
Query: 675 NDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEI 734
NDN P+F + ++ ++A +GT+++++ A+D D +N I Y A F +
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATKRLFAL 67
Query: 735 QPESGWIVLKKPLD 748
+G I +++ LD
Sbjct: 68 NNTTGLITVQRSLD 81
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 367 NDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSGTNAEIEY 411
NDN P F+ + H I E+ GTS++++ ATDAD G+NAEI Y
Sbjct: 8 NDNRPVFKEGQVEVH-IPENAPVGTSVIQLHATDADIGSNAEIRY 51
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 20/124 (16%)
Query: 247 NDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKD-GDNVSIISVKAKSFADREIRYTLK 305
ND P F + ++ ENA T V + A+D D G N EIRY
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNA-------------EIRYIFG 54
Query: 306 AQGQGAG--TFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVELTIRV 363
AQ A F + T+G++ + + LD E+ ++ + V A+ D +TI V
Sbjct: 55 AQVAPATKRLFALNNTTGLITVQRSLDREETA---IHKVTVLAS-DGSSTPARATVTINV 110
Query: 364 TDVN 367
TDVN
Sbjct: 111 TDVN 114
>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The
Calcium Bound State, Nmr, 20 Structures
Length = 146
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 8/122 (6%)
Query: 290 VKAKSFADREIRYTLKAQGQGA-----GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIV 344
V+ KS D+E + GQGA G F I +G +K+ + LD E + + +YS V
Sbjct: 24 VQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV 83
Query: 345 TATEDSGGFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSG 404
++ ++ +E+ I VTD NDN P+F ++ ++ E GTS++KV ATDAD
Sbjct: 84 SSNGEA--VEDPMEIVITVTDQNDNRPEFTQEVFEG-SVAEGAVPGTSVMKVSATDADDD 140
Query: 405 TN 406
N
Sbjct: 141 VN 142
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 606 QVKYSIVQQPNQKG--AKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEG 663
+V YSI Q K F ++ ETG + + DRE K++ + + GE ++E
Sbjct: 35 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAI-AKYILYSHAVSSNGE-AVED 92
Query: 664 VCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDADNN 713
+ +TD NDN P F ++ + +V + A GT++++VSA+D D D N
Sbjct: 93 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVN 142
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 55/103 (53%), Gaps = 14/103 (13%)
Query: 505 GQFVIEDITGVIRLNSKSISLDRD---KYELNVTAVDDGACCANGDQSVHTATAVVVVFI 561
G F+IE TG +++ LDR+ KY L AV +NG ++V +V+ +
Sbjct: 51 GVFIIERETGWLKVTQ---PLDREAIAKYILYSHAV-----SSNG-EAVEDPMEIVIT-V 100
Query: 562 TDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGVN 604
TD NDN+P F + + V EGA G+ V+KV ATD D VN
Sbjct: 101 TDQNDNRPEFTQ-EVFEGSVAEGAVPGTSVMKVSATDADDDVN 142
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 239 VRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGD 283
+ I ++ND P+F+Q+V+ +V E A P T V V A+D D D
Sbjct: 96 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDD 140
>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12
Length = 215
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 24/181 (13%)
Query: 504 SGQFVIEDITGVIRLNSKSISLDRD---KYELNVTAVDDGACCANGDQSVHTATAVVVVF 560
+G F+I I+G + S + LDR+ ++ L AVD NG+Q + +V+
Sbjct: 48 TGIFIINPISGQL---SVTKPLDRELIARFHLRAHAVD-----INGNQVENPID--IVIN 97
Query: 561 ITDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDED--KGVNGQVKYSIVQQPNQK 618
+ D+NDN+P F + V EG+ G+ V+ V A D D +NG ++Y I+ Q
Sbjct: 98 VIDMNDNRPEFLH-QVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPST 156
Query: 619 GAK--FTVDEETGEVVTNKV-FDREGDDGKFVSVTIKATD-QGEPS--LEGVCSFTVEIT 672
+ FT++ ETG+++T DRE + ++ I+ATD +G P+ L + + +T
Sbjct: 157 PSPNMFTINNETGDIITVAAGLDRE--KVQQYTLIIQATDMEGNPTYGLSNTATAVITVT 214
Query: 673 D 673
D
Sbjct: 215 D 215
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 21/127 (16%)
Query: 247 NDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKA 306
ND P+F QV+ +V E + P T V TV A D D N + +RY + +
Sbjct: 102 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNA----------LNGMLRYRILS 151
Query: 307 QGQGAGTFNI----GPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSG----GFSTSVE 358
Q + N+ T I+ +A LD E ++Q Y+LI+ AT+ G G S +
Sbjct: 152 QAPSTPSPNMFTINNETGDIITVAAGLDREKVQQ---YTLIIQATDMEGNPTYGLSNTAT 208
Query: 359 LTIRVTD 365
I VTD
Sbjct: 209 AVITVTD 215
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 10/131 (7%)
Query: 290 VKAKSFADREIRYTLKAQGQGA-----GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIV 344
V+ +S D+ + G GA G F I P SG + + K LD E + + H+ + V
Sbjct: 22 VRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAV 81
Query: 345 TATEDSGGFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDAD-- 402
+ +++ I V D+NDN P+F L ++ E GT ++ V A DAD
Sbjct: 82 DINGNQ--VENPIDIVINVIDMNDNRPEF-LHQVWNGSVPEGSKPGTYVMTVTAIDADDP 138
Query: 403 SGTNAEIEYHV 413
+ N + Y +
Sbjct: 139 NALNGMLRYRI 149
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 83/207 (40%), Gaps = 45/207 (21%)
Query: 597 TDEDKGVNGQVKYSI----VQQPNQKGAKFTVDEETGEVVTNKVFDREGDDGKFVSVTIK 652
+D DK N ++YS+ QP F ++ +G++ K DRE +F +
Sbjct: 26 SDRDK--NLSLRYSVTGPGADQP--PTGIFIINPISGQLSVTKPLDRELI-ARF-HLRAH 79
Query: 653 ATDQGEPSLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDADN 712
A D +E + + D+NDN P F Q + +V + + GT ++ V+A D D N
Sbjct: 80 AVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPN 139
Query: 713 --NGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLDVYYYIVDSPRNEGKDFFEINLQ 770
NG + Y + + +P + F IN +
Sbjct: 140 ALNGMLRYRI--------------------------------LSQAPSTPSPNMFTINNE 167
Query: 771 SGEVFTKVV-FDREKQGAYALEVEARD 796
+G++ T DREK Y L ++A D
Sbjct: 168 TGDIITVAAGLDREKVQQYTLIIQATD 194
>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e
Length = 213
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 11/132 (8%)
Query: 290 VKAKSFADREIRYTLKAQGQGA-----GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIV 344
V+ KS D+E + GQGA G F I +G +K+ + LD E + + +YS V
Sbjct: 22 VQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV 81
Query: 345 TATEDSGGFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSG 404
++ ++ +E+ I VTD NDN P+F ++ ++ E GTS++KV ATDAD
Sbjct: 82 SSNGEA--VEDPMEIVITVTDQNDNRPEFTQEVFEG-SVAEGAVPGTSVMKVSATDADDD 138
Query: 405 T---NAEIEYHV 413
NA I Y +
Sbjct: 139 VNTYNAAIAYTI 150
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 17/158 (10%)
Query: 606 QVKYSIVQQPNQKG--AKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEG 663
+V YSI Q K F ++ ETG + + DRE K++ + + GE ++E
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAI-AKYILYSHAVSSNGE-AVED 90
Query: 664 VCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDAD---NNGAIVYTL 720
+ +TD NDN P F ++ + +V + A GT++++VSA+D D D N AI YT+
Sbjct: 91 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 721 SA-----PYNQMDLEYFEIQPESGWI-VLKKPLDVYYY 752
+ P+ M F + ++G I VL LD Y
Sbjct: 151 VSQDPELPHKNM----FTVNRDTGVISVLTSGLDRESY 184
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 75/145 (51%), Gaps = 20/145 (13%)
Query: 505 GQFVIEDITGVIRLNSKSISLDRD---KYELNVTAVDDGACCANGDQSVHTATAVVVVFI 561
G F+IE TG +++ LDR+ KY L AV +NG ++V +V+ +
Sbjct: 49 GVFIIERETGWLKVTQP---LDREAIAKYILYSHAV-----SSNG-EAVEDPMEIVIT-V 98
Query: 562 TDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGV---NGQVKYSIVQQPNQK 618
TD NDN+P F + + V EGA G+ V+KV ATD D V N + Y+IV Q +
Sbjct: 99 TDQNDNRPEFTQ-EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPEL 157
Query: 619 GAK--FTVDEETGEV-VTNKVFDRE 640
K FTV+ +TG + V DRE
Sbjct: 158 PHKNMFTVNRDTGVISVLTSGLDRE 182
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 17/132 (12%)
Query: 239 VRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADR 298
+ I ++ND P+F+Q+V+ +V E A P T V V A+D D D V + A
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDD------VNTYNAA-- 145
Query: 299 EIRYTLKAQG---QGAGTFNIGPTSGIVK-LAKELDFEDLRQPHVYSLIVTATEDSG-GF 353
I YT+ +Q F + +G++ L LD E Y+L+V A + G G
Sbjct: 146 -IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESY---PTYTLVVQAADLQGEGL 201
Query: 354 STSVELTIRVTD 365
ST+ + I V D
Sbjct: 202 STTAKAVITVKD 213
>pdb|1Q1P|A Chain A, E-Cadherin Activation
Length = 212
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 11/132 (8%)
Query: 290 VKAKSFADREIRYTLKAQGQGA-----GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIV 344
V+ KS D+E + GQGA G F I +G +K+ + LD E + + +YS V
Sbjct: 21 VQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV 80
Query: 345 TATEDSGGFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSG 404
++ ++ +E+ I VTD NDN P+F ++ ++ E GTS++KV ATDAD
Sbjct: 81 SSNGEA--VEDPMEIVITVTDQNDNRPEFTQEVFEG-SVAEGAVPGTSVMKVSATDADDD 137
Query: 405 T---NAEIEYHV 413
NA I Y +
Sbjct: 138 VNTYNAAIAYTI 149
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 17/158 (10%)
Query: 606 QVKYSIVQQPNQKG--AKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEG 663
+V YSI Q K F ++ ETG + + DRE K++ + + GE ++E
Sbjct: 32 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAI-AKYILYSHAVSSNGE-AVED 89
Query: 664 VCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDAD---NNGAIVYTL 720
+ +TD NDN P F ++ + +V + A GT++++VSA+D D D N AI YT+
Sbjct: 90 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 149
Query: 721 SA-----PYNQMDLEYFEIQPESGWI-VLKKPLDVYYY 752
+ P+ M F + ++G I VL LD Y
Sbjct: 150 VSQDPELPHKNM----FTVNRDTGVISVLTSGLDRESY 183
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 75/145 (51%), Gaps = 20/145 (13%)
Query: 505 GQFVIEDITGVIRLNSKSISLDRD---KYELNVTAVDDGACCANGDQSVHTATAVVVVFI 561
G F+IE TG +++ LDR+ KY L AV +NG ++V +V+ +
Sbjct: 48 GVFIIERETGWLKVTQP---LDREAIAKYILYSHAV-----SSNG-EAVEDPMEIVIT-V 97
Query: 562 TDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGV---NGQVKYSIVQQPNQK 618
TD NDN+P F + + V EGA G+ V+KV ATD D V N + Y+IV Q +
Sbjct: 98 TDQNDNRPEFTQ-EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPEL 156
Query: 619 GAK--FTVDEETGEV-VTNKVFDRE 640
K FTV+ +TG + V DRE
Sbjct: 157 PHKNMFTVNRDTGVISVLTSGLDRE 181
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 17/132 (12%)
Query: 239 VRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADR 298
+ I ++ND P+F+Q+V+ +V E A P T V V A+D D D + +
Sbjct: 93 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDD---------VNTYNA 143
Query: 299 EIRYTLKAQG---QGAGTFNIGPTSGIVK-LAKELDFEDLRQPHVYSLIVTATEDSG-GF 353
I YT+ +Q F + +G++ L LD E Y+L+V A + G G
Sbjct: 144 AIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESY---PTYTLVVQAADLQGEGL 200
Query: 354 STSVELTIRVTD 365
ST+ + I V D
Sbjct: 201 STTAKAVITVKD 212
>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant
pdb|3Q2N|B Chain B, Mouse E-Cadherin Ec1-2 L175d Mutant
Length = 213
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 11/132 (8%)
Query: 290 VKAKSFADREIRYTLKAQGQGA-----GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIV 344
V+ KS D+E + GQGA G F I +G +K+ + LD E + + +YS V
Sbjct: 22 VQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV 81
Query: 345 TATEDSGGFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSG 404
++ ++ +E+ I VTD NDN P+F ++ ++ E GTS++KV ATDAD
Sbjct: 82 SSNGEA--VEDPMEIVITVTDQNDNRPEFTQEVFEG-SVAEGAVPGTSVMKVSATDADDD 138
Query: 405 T---NAEIEYHV 413
NA I Y +
Sbjct: 139 VNTYNAAIAYTI 150
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 75/145 (51%), Gaps = 20/145 (13%)
Query: 505 GQFVIEDITGVIRLNSKSISLDRD---KYELNVTAVDDGACCANGDQSVHTATAVVVVFI 561
G F+IE TG +++ LDR+ KY L AV +NG ++V +V+ +
Sbjct: 49 GVFIIERETGWLKVTQP---LDREAIAKYILYSHAV-----SSNG-EAVEDPMEIVIT-V 98
Query: 562 TDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGV---NGQVKYSIVQQPNQK 618
TD NDN+P F + + V EGA G+ V+KV ATD D V N + Y+IV Q +
Sbjct: 99 TDQNDNRPEFTQ-EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPEL 157
Query: 619 GAK--FTVDEETGEV-VTNKVFDRE 640
K FTV+ +TG + V DRE
Sbjct: 158 PHKNMFTVNRDTGVISVDTSGLDRE 182
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 7/120 (5%)
Query: 606 QVKYSIVQQPNQKG--AKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEG 663
+V YSI Q K F ++ ETG + + DRE K++ + + GE ++E
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAI-AKYILYSHAVSSNGE-AVED 90
Query: 664 VCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDAD---NNGAIVYTL 720
+ +TD NDN P F ++ + +V + A GT++++VSA+D D D N AI YT+
Sbjct: 91 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 17/132 (12%)
Query: 239 VRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADR 298
+ I ++ND P+F+Q+V+ +V E A P T V V A+D D D V + A
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDD------VNTYNAA-- 145
Query: 299 EIRYTLKAQG---QGAGTFNIGPTSGIVKL-AKELDFEDLRQPHVYSLIVTATEDSG-GF 353
I YT+ +Q F + +G++ + LD E Y+L+V A + G G
Sbjct: 146 -IAYTIVSQDPELPHKNMFTVNRDTGVISVDTSGLDRESY---PTYTLVVQAADLQGEGL 201
Query: 354 STSVELTIRVTD 365
ST+ + I V D
Sbjct: 202 STTAKAVITVKD 213
>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2
Length = 213
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 11/132 (8%)
Query: 290 VKAKSFADREIRYTLKAQGQGA-----GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIV 344
V+ KS D+E + GQGA G F I +G +K+ + LD E + + +YS V
Sbjct: 22 VQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV 81
Query: 345 TATEDSGGFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSG 404
++ ++ +E+ I VTD NDN P+F ++ ++ E GTS++KV ATDAD
Sbjct: 82 SSNGEA--VEDPMEIVITVTDQNDNRPEFTQEVFEG-SVAEGAVPGTSVMKVSATDADDD 138
Query: 405 T---NAEIEYHV 413
NA I Y +
Sbjct: 139 VNTYNAAIAYTI 150
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 17/158 (10%)
Query: 606 QVKYSIVQQPNQKG--AKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEG 663
+V YSI Q K F ++ ETG + + DRE K++ + + GE ++E
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAI-AKYILYSHAVSSNGE-AVED 90
Query: 664 VCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDAD---NNGAIVYTL 720
+ +TD NDN P F ++ + +V + A GT++++VSA+D D D N AI YT+
Sbjct: 91 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 721 SA-----PYNQMDLEYFEIQPESGWI-VLKKPLDVYYY 752
+ P+ M F + ++G I VL LD Y
Sbjct: 151 VSQDPELPHKNM----FTVNRDTGVISVLTSGLDRESY 184
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 75/145 (51%), Gaps = 20/145 (13%)
Query: 505 GQFVIEDITGVIRLNSKSISLDRD---KYELNVTAVDDGACCANGDQSVHTATAVVVVFI 561
G F+IE TG +++ LDR+ KY L AV +NG ++V +V+ +
Sbjct: 49 GVFIIERETGWLKVTQP---LDREAIAKYILYSHAV-----SSNG-EAVEDPMEIVIT-V 98
Query: 562 TDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGV---NGQVKYSIVQQPNQK 618
TD NDN+P F + + V EGA G+ V+KV ATD D V N + Y+IV Q +
Sbjct: 99 TDQNDNRPEFTQ-EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPEL 157
Query: 619 GAK--FTVDEETGEV-VTNKVFDRE 640
K FTV+ +TG + V DRE
Sbjct: 158 PHKNMFTVNRDTGVISVLTSGLDRE 182
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 17/132 (12%)
Query: 239 VRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADR 298
+ I ++ND P+F+Q+V+ +V E A P T V V A+D D D V + A
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDD------VNTYNAA-- 145
Query: 299 EIRYTLKAQG---QGAGTFNIGPTSGIVK-LAKELDFEDLRQPHVYSLIVTATEDSG-GF 353
I YT+ +Q F + +G++ L LD E Y+L+V A + G G
Sbjct: 146 -IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESY---PTYTLVVQAADLQGEGL 201
Query: 354 STSVELTIRVTD 365
ST+ + I V D
Sbjct: 202 STTAKAVITVKD 213
>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
pdb|3QRB|B Chain B, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
Length = 213
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 11/132 (8%)
Query: 290 VKAKSFADREIRYTLKAQGQGA-----GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIV 344
V+ KS D+E + GQGA G F I +G +K+ + LD E + + +YS V
Sbjct: 22 VQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV 81
Query: 345 TATEDSGGFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSG 404
++ ++ +E+ I VTD NDN P+F ++ ++ E GTS++KV ATDAD
Sbjct: 82 SSNGEA--VEDPMEIVITVTDQNDNRPEFTQEVFEG-SVAEGAVPGTSVMKVSATDADDD 138
Query: 405 T---NAEIEYHV 413
NA I Y +
Sbjct: 139 VNTYNAAIAYTI 150
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 17/158 (10%)
Query: 606 QVKYSIVQQPNQKG--AKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEG 663
+V YSI Q K F ++ ETG + + DRE K++ + + GE ++E
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAI-AKYILYSHAVSSNGE-AVED 90
Query: 664 VCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDAD---NNGAIVYTL 720
+ +TD NDN P F ++ + +V + A GT++++VSA+D D D N AI YT+
Sbjct: 91 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 721 SA-----PYNQMDLEYFEIQPESGWI-VLKKPLDVYYY 752
+ P+ M F + ++G I VL LD Y
Sbjct: 151 VSQDPELPHKNM----FTVNRDTGVISVLTSGLDRESY 184
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 75/145 (51%), Gaps = 20/145 (13%)
Query: 505 GQFVIEDITGVIRLNSKSISLDRD---KYELNVTAVDDGACCANGDQSVHTATAVVVVFI 561
G F+IE TG +++ LDR+ KY L AV +NG ++V +V+ +
Sbjct: 49 GVFIIERETGWLKVTQP---LDREAIAKYILYSHAV-----SSNG-EAVEDPMEIVIT-V 98
Query: 562 TDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGV---NGQVKYSIVQQPNQK 618
TD NDN+P F + + V EGA G+ V+KV ATD D V N + Y+IV Q +
Sbjct: 99 TDQNDNRPEFTQ-EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPEL 157
Query: 619 GAK--FTVDEETGEV-VTNKVFDRE 640
K FTV+ +TG + V DRE
Sbjct: 158 PHKNMFTVNRDTGVISVLTSGLDRE 182
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 17/132 (12%)
Query: 239 VRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADR 298
+ I ++ND P+F+Q+V+ +V E A P T V V A+D D D + +
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDD---------VNTYNA 144
Query: 299 EIRYTLKAQG---QGAGTFNIGPTSGIVK-LAKELDFEDLRQPHVYSLIVTATEDSG-GF 353
I YT+ +Q F + +G++ L LD E Y+L+V A + G G
Sbjct: 145 AIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESY---PTYTLVVQAADLQGEGL 201
Query: 354 STSVELTIRVTD 365
ST+ + I V D
Sbjct: 202 STTAKAVITVKD 213
>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension
pdb|3LNG|B Chain B, Crystal Structure Of E-Cadherin Ec12 Aa Extension
Length = 215
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 11/132 (8%)
Query: 290 VKAKSFADREIRYTLKAQGQGA-----GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIV 344
V+ KS D+E + GQGA G F I +G +K+ + LD E + + +YS V
Sbjct: 24 VQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV 83
Query: 345 TATEDSGGFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSG 404
++ ++ +E+ I VTD NDN P+F ++ ++ E GTS++KV ATDAD
Sbjct: 84 SSNGEA--VEDPMEIVITVTDQNDNRPEFTQEVFEG-SVAEGAVPGTSVMKVSATDADDD 140
Query: 405 T---NAEIEYHV 413
NA I Y +
Sbjct: 141 VNTYNAAIAYTI 152
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 17/158 (10%)
Query: 606 QVKYSIVQQPNQKG--AKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEG 663
+V YSI Q K F ++ ETG + + DRE K++ + + GE ++E
Sbjct: 35 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAI-AKYILYSHAVSSNGE-AVED 92
Query: 664 VCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDAD---NNGAIVYTL 720
+ +TD NDN P F ++ + +V + A GT++++VSA+D D D N AI YT+
Sbjct: 93 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 152
Query: 721 SA-----PYNQMDLEYFEIQPESGWI-VLKKPLDVYYY 752
+ P+ M F + ++G I VL LD Y
Sbjct: 153 VSQDPELPHKNM----FTVNRDTGVISVLTSGLDRESY 186
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 75/145 (51%), Gaps = 20/145 (13%)
Query: 505 GQFVIEDITGVIRLNSKSISLDRD---KYELNVTAVDDGACCANGDQSVHTATAVVVVFI 561
G F+IE TG +++ LDR+ KY L AV +NG ++V +V+ +
Sbjct: 51 GVFIIERETGWLKVTQP---LDREAIAKYILYSHAV-----SSNG-EAVEDPMEIVIT-V 100
Query: 562 TDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGV---NGQVKYSIVQQPNQK 618
TD NDN+P F + + V EGA G+ V+KV ATD D V N + Y+IV Q +
Sbjct: 101 TDQNDNRPEFTQ-EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPEL 159
Query: 619 GAK--FTVDEETGEV-VTNKVFDRE 640
K FTV+ +TG + V DRE
Sbjct: 160 PHKNMFTVNRDTGVISVLTSGLDRE 184
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 17/132 (12%)
Query: 239 VRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADR 298
+ I ++ND P+F+Q+V+ +V E A P T V V A+D D D + +
Sbjct: 96 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDD---------VNTYNA 146
Query: 299 EIRYTLKAQG---QGAGTFNIGPTSGIVK-LAKELDFEDLRQPHVYSLIVTATEDSG-GF 353
I YT+ +Q F + +G++ L LD E Y+L+V A + G G
Sbjct: 147 AIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESY---PTYTLVVQAADLQGEGL 203
Query: 354 STSVELTIRVTD 365
ST+ + I V D
Sbjct: 204 STTAKAVITVKD 215
>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a
pdb|3LNH|B Chain B, Crystal Structure Of E-Cadherin Ec12 W2a
Length = 213
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 11/132 (8%)
Query: 290 VKAKSFADREIRYTLKAQGQGA-----GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIV 344
V+ KS D+E + GQGA G F I +G +K+ + LD E + + +YS V
Sbjct: 22 VQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV 81
Query: 345 TATEDSGGFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSG 404
++ ++ +E+ I VTD NDN P+F ++ ++ E GTS++KV ATDAD
Sbjct: 82 SSNGEA--VEDPMEIVITVTDQNDNRPEFTQEVFEG-SVAEGAVPGTSVMKVSATDADDD 138
Query: 405 T---NAEIEYHV 413
NA I Y +
Sbjct: 139 VNTYNAAIAYTI 150
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 17/158 (10%)
Query: 606 QVKYSIVQQPNQKG--AKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEG 663
+V YSI Q K F ++ ETG + + DRE K++ + + GE ++E
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAI-AKYILYSHAVSSNGE-AVED 90
Query: 664 VCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDAD---NNGAIVYTL 720
+ +TD NDN P F ++ + +V + A GT++++VSA+D D D N AI YT+
Sbjct: 91 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 721 SA-----PYNQMDLEYFEIQPESGWI-VLKKPLDVYYY 752
+ P+ M F + ++G I VL LD Y
Sbjct: 151 VSQDPELPHKNM----FTVNRDTGVISVLTSGLDRESY 184
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 75/145 (51%), Gaps = 20/145 (13%)
Query: 505 GQFVIEDITGVIRLNSKSISLDRD---KYELNVTAVDDGACCANGDQSVHTATAVVVVFI 561
G F+IE TG +++ LDR+ KY L AV +NG ++V +V+ +
Sbjct: 49 GVFIIERETGWLKVTQP---LDREAIAKYILYSHAV-----SSNG-EAVEDPMEIVIT-V 98
Query: 562 TDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGV---NGQVKYSIVQQPNQK 618
TD NDN+P F + + V EGA G+ V+KV ATD D V N + Y+IV Q +
Sbjct: 99 TDQNDNRPEFTQ-EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPEL 157
Query: 619 GAK--FTVDEETGEV-VTNKVFDRE 640
K FTV+ +TG + V DRE
Sbjct: 158 PHKNMFTVNRDTGVISVLTSGLDRE 182
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 17/132 (12%)
Query: 239 VRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADR 298
+ I ++ND P+F+Q+V+ +V E A P T V V A+D D D V + A
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDD------VNTYNAA-- 145
Query: 299 EIRYTLKAQG---QGAGTFNIGPTSGIVK-LAKELDFEDLRQPHVYSLIVTATEDSG-GF 353
I YT+ +Q F + +G++ L LD E Y+L+V A + G G
Sbjct: 146 -IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESY---PTYTLVVQAADLQGEGL 201
Query: 354 STSVELTIRVTD 365
ST+ + I V D
Sbjct: 202 STTAKAVITVKD 213
>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2
pdb|2WHV|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 (all Cation
Binding Sites Occupied By Calcium)
pdb|4APX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AXW|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 214
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 80/178 (44%), Gaps = 29/178 (16%)
Query: 578 YPKVEEGAPNGSPVIKVHATDEDK-----GVNGQVKYSIVQQPNQKGAKFTVDEETGEVV 632
Y + E P GS V ++ A D D GV+G+ + F V+ +TG V
Sbjct: 17 YLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGE----------EASRFFAVEPDTGVVW 66
Query: 633 TNKVFDREGDDGKFVSVTIKATDQGEPSLEGVCS--FTVEITDVNDNPPLFDRQKYVENV 690
+ DRE +F +V +D +GV + +++ DVNDN P F Q Y +
Sbjct: 67 LRQPLDRETK-SEF-TVEFSVSDH-----QGVITRKVNIQVGDVNDNAPTFHNQPYSVRI 119
Query: 691 KQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLD 748
++ +GT I V+A+D D G+++Y+ P +F I G + + + LD
Sbjct: 120 PENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPS-----PFFAIDSARGIVTVIQELD 172
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/182 (32%), Positives = 81/182 (44%), Gaps = 21/182 (11%)
Query: 495 FGFVGGSTSSGQFVIEDITGVIRLNSKSISLDRD-KYELNVTAVDDGACCANGDQSVHTA 553
FG V G +S F +E TGV+ L LDR+ K E V + Q V
Sbjct: 45 FG-VSGEEASRFFAVEPDTGVVWLRQP---LDRETKSEFTV------EFSVSDHQGV--I 92
Query: 554 TAVVVVFITDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQ 613
T V + + DVNDN P F Y ++ E P G+P+ V+ATD D G G V YS
Sbjct: 93 TRKVNIQVGDVNDNAPTFHN-QPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSF-- 149
Query: 614 QPNQKGAKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEP-SLEGVCSFTVEIT 672
QP F +D G V + D E +T+ ATDQ + L + + + IT
Sbjct: 150 QP--PSPFFAIDSARGIVTVIQELDYEVTQAY--QLTVNATDQDKTRPLSTLANLAIIIT 205
Query: 673 DV 674
D+
Sbjct: 206 DL 207
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 9/130 (6%)
Query: 314 FNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVELTIRVTDVNDNAPKF 373
F + P +G+V L + LD E + +++ + ++ G + V I+V DVNDNAP F
Sbjct: 56 FAVEPDTGVVWLRQPLDRETKSE---FTVEFSVSDHQGVITRKVN--IQVGDVNDNAPTF 110
Query: 374 ELPDYQAHNIDEDITTGTSILKVKATDADSGTNAEIEYHVSDDN--FAVDS-NGVINNHK 430
Y I E+ GT I V ATD D G + Y + FA+DS G++ +
Sbjct: 111 HNQPYSVR-IPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQ 169
Query: 431 TLDADNNNAY 440
LD + AY
Sbjct: 170 ELDYEVTQAY 179
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 11/132 (8%)
Query: 64 VNWVIEQLLDRDVINHEVVH---TDNQRVI-----IHVKDVNDESPYFINRPLPMQAVVQ 115
V W + Q LDR+ + V +D+Q VI I V DVND +P F N+P ++ +
Sbjct: 64 VVW-LRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPYSVR--IP 120
Query: 116 LNAPPNTPVFTLQARDPDSDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDPFQLDQEYV 175
N P TP+F + A DPD F +D G+V +++ Q Y
Sbjct: 121 ENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEVTQAYQ 180
Query: 176 LYVKAEDQNGRK 187
L V A DQ+ +
Sbjct: 181 LTVNATDQDKTR 192
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 20/133 (15%)
Query: 236 TATVRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSF 295
T V I + ND P F Q Y+ + EN T + V A+D D
Sbjct: 93 TRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLG------------ 140
Query: 296 ADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATED--SGGF 353
A + Y+ + + F I GIV + +ELD+E + Y L V AT+ +
Sbjct: 141 AGGSVLYSFQPP---SPFFAIDSARGIVTVIQELDYEVTQ---AYQLTVNATDQDKTRPL 194
Query: 354 STSVELTIRVTDV 366
ST L I +TD+
Sbjct: 195 STLANLAIIITDL 207
>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a
pdb|3LNF|B Chain B, Crystal Structure Of E-Cadherin Ec12 K14ew2a
Length = 213
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 69/132 (52%), Gaps = 11/132 (8%)
Query: 290 VKAKSFADREIRYTLKAQGQGA-----GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIV 344
V+ KS D+E + GQGA G F I +G +K+ + LD E + + +YS V
Sbjct: 22 VQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV 81
Query: 345 TATEDSGGFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSG 404
++ ++ +E+ I VTD NDN P+F ++ ++ E GTS++KV ATDAD
Sbjct: 82 SSNGEA--VEDPMEIVITVTDQNDNRPEFTQEVFEG-SVAEGAVPGTSVMKVSATDADDD 138
Query: 405 T---NAEIEYHV 413
NA I Y +
Sbjct: 139 VNTYNAAIAYTI 150
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 17/158 (10%)
Query: 606 QVKYSIVQQPNQKG--AKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEG 663
+V YSI Q K F ++ ETG + + DRE K++ + + GE ++E
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAI-AKYILYSHAVSSNGE-AVED 90
Query: 664 VCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDAD---NNGAIVYTL 720
+ +TD NDN P F ++ + +V + A GT++++VSA+D D D N AI YT+
Sbjct: 91 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 721 SA-----PYNQMDLEYFEIQPESGWI-VLKKPLDVYYY 752
+ P+ M F + ++G I VL LD Y
Sbjct: 151 VSQDPELPHKNM----FTVNRDTGVISVLTSGLDRESY 184
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/145 (36%), Positives = 75/145 (51%), Gaps = 20/145 (13%)
Query: 505 GQFVIEDITGVIRLNSKSISLDRD---KYELNVTAVDDGACCANGDQSVHTATAVVVVFI 561
G F+IE TG +++ LDR+ KY L AV +NG ++V +V+ +
Sbjct: 49 GVFIIERETGWLKVTQP---LDREAIAKYILYSHAV-----SSNG-EAVEDPMEIVIT-V 98
Query: 562 TDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGV---NGQVKYSIVQQPNQK 618
TD NDN+P F + + V EGA G+ V+KV ATD D V N + Y+IV Q +
Sbjct: 99 TDQNDNRPEFTQ-EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPEL 157
Query: 619 GAK--FTVDEETGEV-VTNKVFDRE 640
K FTV+ +TG + V DRE
Sbjct: 158 PHKNMFTVNRDTGVISVLTSGLDRE 182
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 17/132 (12%)
Query: 239 VRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADR 298
+ I ++ND P+F+Q+V+ +V E A P T V V A+D D D V + A
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDD------VNTYNAA-- 145
Query: 299 EIRYTLKAQG---QGAGTFNIGPTSGIVK-LAKELDFEDLRQPHVYSLIVTATEDSG-GF 353
I YT+ +Q F + +G++ L LD E Y+L+V A + G G
Sbjct: 146 -IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESY---PTYTLVVQAADLQGEGL 201
Query: 354 STSVELTIRVTD 365
ST+ + I V D
Sbjct: 202 STTAKAVITVKD 213
>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant
pdb|3Q2L|B Chain B, Mouse E-Cadherin Ec1-2 V81d Mutant
Length = 213
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 68/134 (50%), Gaps = 15/134 (11%)
Query: 290 VKAKSFADREIRYTLKAQGQGA-----GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIV 344
V+ KS D+E + GQGA G F I +G +K+ + LD E + + +YS
Sbjct: 22 VQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYS--- 78
Query: 345 TATEDSGGFSTS--VELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDAD 402
+ S G + +E+ I VTD NDN P+F ++ ++ E GTS++KV ATDAD
Sbjct: 79 -HADSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEG-SVAEGAVPGTSVMKVSATDAD 136
Query: 403 SGT---NAEIEYHV 413
NA I Y +
Sbjct: 137 DDVNTYNAAIAYTI 150
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 17/158 (10%)
Query: 606 QVKYSIVQQPNQKG--AKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEG 663
+V YSI Q K F ++ ETG + + DRE K++ + + GE ++E
Sbjct: 33 KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAI-AKYILYSHADSSNGE-AVED 90
Query: 664 VCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDAD---NNGAIVYTL 720
+ +TD NDN P F ++ + +V + A GT++++VSA+D D D N AI YT+
Sbjct: 91 PMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 721 SA-----PYNQMDLEYFEIQPESGWI-VLKKPLDVYYY 752
+ P+ M F + ++G I VL LD Y
Sbjct: 151 VSQDPELPHKNM----FTVNRDTGVISVLTSGLDRESY 184
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 74/145 (51%), Gaps = 20/145 (13%)
Query: 505 GQFVIEDITGVIRLNSKSISLDRD---KYELNVTAVDDGACCANGDQSVHTATAVVVVFI 561
G F+IE TG +++ LDR+ KY L A +NG ++V +V+ +
Sbjct: 49 GVFIIERETGWLKVTQP---LDREAIAKYILY-----SHADSSNG-EAVEDPMEIVIT-V 98
Query: 562 TDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGV---NGQVKYSIVQQPNQK 618
TD NDN+P F + + V EGA G+ V+KV ATD D V N + Y+IV Q +
Sbjct: 99 TDQNDNRPEFTQ-EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPEL 157
Query: 619 GAK--FTVDEETGEV-VTNKVFDRE 640
K FTV+ +TG + V DRE
Sbjct: 158 PHKNMFTVNRDTGVISVLTSGLDRE 182
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 17/132 (12%)
Query: 239 VRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADR 298
+ I ++ND P+F+Q+V+ +V E A P T V V A+D D D V + A
Sbjct: 94 IVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDD------VNTYNAA-- 145
Query: 299 EIRYTLKAQG---QGAGTFNIGPTSGIVK-LAKELDFEDLRQPHVYSLIVTATEDSG-GF 353
I YT+ +Q F + +G++ L LD E Y+L+V A + G G
Sbjct: 146 -IAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESY---PTYTLVVQAADLQGEGL 201
Query: 354 STSVELTIRVTD 365
ST+ + I V D
Sbjct: 202 STTAKAVITVKD 213
>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|2WD0|C Chain C, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|4AQA|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 29/178 (16%)
Query: 578 YPKVEEGAPNGSPVIKVHATDEDK-----GVNGQVKYSIVQQPNQKGAKFTVDEETGEVV 632
Y + E P GS V ++ A D D GV+G+ + F V+ +TG V
Sbjct: 17 YLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGE----------EASRFFAVEPDTGVVW 66
Query: 633 TNKVFDREGDDGKFVSVTIKATDQGEPSLEGVCS--FTVEITDVNDNPPLFDRQKYVENV 690
+ DRE +F +V +D +GV + +++ VNDN P F Q Y +
Sbjct: 67 LRQPLDRE-TKSEF-TVEFSVSDH-----QGVITRKVNIQVGGVNDNAPTFHNQPYSVRI 119
Query: 691 KQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLD 748
++ +GT I V+A+D D G+++Y+ P +F I G + + + LD
Sbjct: 120 PENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPS-----PFFAIDSARGIVTVIQELD 172
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 80/182 (43%), Gaps = 21/182 (11%)
Query: 495 FGFVGGSTSSGQFVIEDITGVIRLNSKSISLDRD-KYELNVTAVDDGACCANGDQSVHTA 553
FG V G +S F +E TGV+ L LDR+ K E V + Q V T
Sbjct: 45 FG-VSGEEASRFFAVEPDTGVVWLRQP---LDRETKSEFTV------EFSVSDHQGVITR 94
Query: 554 TAVVVVFITDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQ 613
V + + VNDN P F Y ++ E P G+P+ V+ATD D G G V YS
Sbjct: 95 K--VNIQVGGVNDNAPTFHN-QPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSF-- 149
Query: 614 QPNQKGAKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEP-SLEGVCSFTVEIT 672
QP F +D G V + D E +T+ ATDQ + L + + + IT
Sbjct: 150 QP--PSPFFAIDSARGIVTVIQELDYEVTQAY--QLTVNATDQDKTRPLSTLANLAIIIT 205
Query: 673 DV 674
D+
Sbjct: 206 DL 207
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 62/130 (47%), Gaps = 9/130 (6%)
Query: 314 FNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVELTIRVTDVNDNAPKF 373
F + P +G+V L + LD E + +++ + ++ G + V I+V VNDNAP F
Sbjct: 56 FAVEPDTGVVWLRQPLDRETKSE---FTVEFSVSDHQGVITRKVN--IQVGGVNDNAPTF 110
Query: 374 ELPDYQAHNIDEDITTGTSILKVKATDADSGTNAEIEYHVSDDN--FAVDS-NGVINNHK 430
Y I E+ GT I V ATD D G + Y + FA+DS G++ +
Sbjct: 111 HNQPYSVR-IPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQ 169
Query: 431 TLDADNNNAY 440
LD + AY
Sbjct: 170 ELDYEVTQAY 179
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 11/132 (8%)
Query: 64 VNWVIEQLLDRDVINHEVVH---TDNQRVI-----IHVKDVNDESPYFINRPLPMQAVVQ 115
V W + Q LDR+ + V +D+Q VI I V VND +P F N+P ++ +
Sbjct: 64 VVW-LRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGGVNDNAPTFHNQPYSVR--IP 120
Query: 116 LNAPPNTPVFTLQARDPDSDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDPFQLDQEYV 175
N P TP+F + A DPD F +D G+V +++ Q Y
Sbjct: 121 ENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVIQELDYEVTQAYQ 180
Query: 176 LYVKAEDQNGRK 187
L V A DQ+ +
Sbjct: 181 LTVNATDQDKTR 192
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 54/133 (40%), Gaps = 20/133 (15%)
Query: 236 TATVRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSF 295
T V I ND P F Q Y+ + EN T + V A+D D
Sbjct: 93 TRKVNIQVGGVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLG------------ 140
Query: 296 ADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATED--SGGF 353
A + Y+ + + F I GIV + +ELD+E + Y L V AT+ +
Sbjct: 141 AGGSVLYSFQPP---SPFFAIDSARGIVTVIQELDYEVTQ---AYQLTVNATDQDKTRPL 194
Query: 354 STSVELTIRVTDV 366
ST L I +TD+
Sbjct: 195 STLANLAIIITDL 207
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 15/127 (11%)
Query: 101 PYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDSDHNIHYFIVRDRTGGR-FEVDERSGV 159
P+F N ++ + P + V L ARD D+D + F V R F V+ +GV
Sbjct: 7 PFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLV--FGVSGEEASRFFAVEPDTGV 64
Query: 160 VRTRGTDPFQLDQEYVLYVKAEDQNGRKDERKFQSTPEERLSI-VGG--KRAPQFYMPSY 216
V R + E+ + D G +++I VGG AP F+ Y
Sbjct: 65 VWLRQPLDRETKSEFTVEFSVSDHQG---------VITRKVNIQVGGVNDNAPTFHNQPY 115
Query: 217 EAEIPEN 223
IPEN
Sbjct: 116 SVRIPEN 122
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213)
Length = 213
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 13/133 (9%)
Query: 290 VKAKSFADREIRYTLKAQGQGA-----GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIV 344
V+ KS D+E + GQGA G F I +G +K+ + LD E + Y+L
Sbjct: 22 VQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERI---ATYTLFS 78
Query: 345 TATEDSG-GFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADS 403
A +G +E+ I VTD NDN P+F ++ ++ E GTS+++V ATDAD
Sbjct: 79 HAVSSNGNAVEDPMEILITVTDQNDNKPEFTQEVFKG-SVMEGALPGTSVMEVTATDADD 137
Query: 404 GT---NAEIEYHV 413
NA I Y +
Sbjct: 138 DVNTYNAAIAYTI 150
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 14/142 (9%)
Query: 505 GQFVIEDITGVIRLNSKSISLDRDKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDV 564
G F+IE TG +++ LDR++ + + A +NG+ +V +++ +TD
Sbjct: 49 GVFIIERETGWLKVTEP---LDRER--IATYTLFSHAVSSNGN-AVEDPMEILIT-VTDQ 101
Query: 565 NDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGV---NGQVKYSIVQQPNQKGAK 621
NDNKP F + + V EGA G+ V++V ATD D V N + Y+I+ Q + K
Sbjct: 102 NDNKPEFTQ-EVFKGSVMEGALPGTSVMEVTATDADDDVNTYNAAIAYTILSQDPELPDK 160
Query: 622 --FTVDEETGEV-VTNKVFDRE 640
FT++ TG + V DRE
Sbjct: 161 NMFTINRNTGVISVVTTGLDRE 182
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 81/204 (39%), Gaps = 52/204 (25%)
Query: 605 GQVKYSIVQQPNQKGAK------FTVDEETGEVVTNKVFDREGDDGKFVSVTI--KATDQ 656
G+V YSI Q GA F ++ ETG + + DRE + + T+ A
Sbjct: 32 GKVFYSITGQ----GADTPPVGVFIIERETGWLKVTEPLDRE----RIATYTLFSHAVSS 83
Query: 657 GEPSLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDAD---NN 713
++E + +TD NDN P F ++ + +V + A GT+++ V+A+D D D N
Sbjct: 84 NGNAVEDPMEILITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVMEVTATDADDDVNTYN 143
Query: 714 GAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLDVYYYIVDSPRNEGKDFFEINLQSGE 773
AI YT+ + P K+ F IN +G
Sbjct: 144 AAIAYTI--------------------------------LSQDPELPDKNMFTINRNTGV 171
Query: 774 V-FTKVVFDREKQGAYALEVEARD 796
+ DRE Y L V+A D
Sbjct: 172 ISVVTTGLDRESFPTYTLVVQAAD 195
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 16/117 (13%)
Query: 239 VRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADR 298
+ I ++ND +P+F+Q+V+ +V E A P T V V A+D D D V + A
Sbjct: 94 ILITVTDQNDNKPEFTQEVFKGSVMEGALPGTSVMEVTATDADDD------VNTYNAA-- 145
Query: 299 EIRYTLKAQG---QGAGTFNIGPTSGIVKLAKE-LDFEDLRQPHVYSLIVTATEDSG 351
I YT+ +Q F I +G++ + LD E Y+L+V A + G
Sbjct: 146 -IAYTILSQDPELPDKNMFTINRNTGVISVVTTGLDRESF---PTYTLVVQAADLQG 198
>pdb|4APX|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|C Chain C, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|D Chain D, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQA|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
pdb|4AQE|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
pdb|4AXW|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 242
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 13/159 (8%)
Query: 508 VIEDITGVIRLNSKSISLDRDKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDN 567
+++ + ++ LNS LDRD +N+ ++ C N V +V + D NDN
Sbjct: 66 LLDPVKQMLFLNSTGRVLDRDP-PMNIHSIVVQVQCVNKKVGTVIYHEVRIV-VRDRNDN 123
Query: 568 KPVFRECSTYYPKVEEGAPNGSPVIKVH-----ATDEDKGVNGQVKYSIVQQPNQKGAKF 622
P F+ +YY V E P G+ + ATD D G NGQ++Y I P +
Sbjct: 124 SPTFKH-ESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQYNPEDPTSND 182
Query: 623 TVD---EETGEVVTNKVFDREGDDGKFVSVTIKATDQGE 658
T + TG VV K + E D V I+A D+ +
Sbjct: 183 TFEIPLMLTGNVVLRKRLNYE--DKTRYYVIIQANDRAQ 219
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 16/102 (15%)
Query: 358 ELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKV-----KATDADSGTNAEIEYH 412
E+ I V D NDN+P F+ Y A ++E GT+I ATD D G N +IEY
Sbjct: 112 EVRIVVRDRNDNSPTFKHESYYA-TVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYV 170
Query: 413 V--------SDDNFAVD--SNGVINNHKTLDADNNNAYYEFV 444
+ S+D F + G + K L+ ++ YY +
Sbjct: 171 IQYNPEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVII 212
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 12/100 (12%)
Query: 669 VEITDVNDNPPLFDRQKYVENVKQDASIGTNILRV-----SASDEDADNNGAIVYTLSA- 722
+ + D NDN P F + Y V + +GT I A+D D NG I Y +
Sbjct: 115 IVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDIDDGPNGQIEYVIQYN 174
Query: 723 PYNQMDLEYFEIQPE-SGWIVLKKPLDV-----YYYIVDS 756
P + + FEI +G +VL+K L+ YY I+ +
Sbjct: 175 PEDPTSNDTFEIPLMLTGNVVLRKRLNYEDKTRYYVIIQA 214
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
pdb|3PPE|B Chain B, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
Length = 203
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 37/139 (26%)
Query: 660 SLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDADNNGAIVYT 719
SLE F ++++D+NDN P+F ++ + +V + + +GT++ +V+A EDAD+
Sbjct: 83 SLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTA--EDADDP------ 134
Query: 720 LSAPYNQMDLEYFEIQPESGWIVLKKPLDVYYYIVDSPRNEGKDFFEINLQSGEVFT-KV 778
+ V Y I+ +G ++F ++ SG +FT +
Sbjct: 135 ----------------------TVAGHATVTYQII-----KGNEYFTVD-DSGVIFTARA 166
Query: 779 VFDREKQGAYALEVEARDG 797
DRE Q AY + V+A+D
Sbjct: 167 DLDRESQSAYEIIVKAKDA 185
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 8/96 (8%)
Query: 358 ELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSGT---NAEIEYHVS 414
+ I+V+D+NDNAP F + ++ E GTS+ KV A DAD T +A + Y +
Sbjct: 89 KFIIKVSDINDNAPIFVQKIFNG-SVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQII 147
Query: 415 DDN--FAVDSNGVINNHKT-LDADNNNAYYEFVITA 447
N F VD +GVI + LD ++ +A YE ++ A
Sbjct: 148 KGNEYFTVDDSGVIFTARADLDRESQSA-YEIIVKA 182
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 22/157 (14%)
Query: 525 LDRDK---YELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKPVFRECSTYYPKV 581
LDR+K YEL +D ++S+ + ++ ++D+NDN P+F + + V
Sbjct: 61 LDREKKAEYELTAHIID-----RRNNRSLEPPSKFIIK-VSDINDNAPIFVQ-KIFNGSV 113
Query: 582 EEGAPNGSPVIKVHATD-EDKGVNGQ--VKYSIVQQPNQKGAKFTVDEETGEVVTNKV-F 637
E + G+ V KV A D +D V G V Y I+ KG ++ +++G + T +
Sbjct: 114 PEMSRLGTSVTKVTAEDADDPTVAGHATVTYQII-----KGNEYFTVDDSGVIFTARADL 168
Query: 638 DREGDDGKFVSVTIKATDQ-GEPSLEGVCSFTVEITD 673
DRE + +KA D G + + +TD
Sbjct: 169 DRESQSA--YEIIVKAKDALGLTGESSTATVIIRLTD 203
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 17/121 (14%)
Query: 247 NDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKA 306
ND P F Q+++ +V E + T VT V A D D V+ + Y +
Sbjct: 98 NDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVA---------GHATVTYQII- 147
Query: 307 QGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSG--GFSTSVELTIRVT 364
+G F + + I +LD E Y +IV A + G G S++ + IR+T
Sbjct: 148 --KGNEYFTVDDSGVIFTARADLDRE---SQSAYEIIVKAKDALGLTGESSTATVIIRLT 202
Query: 365 D 365
D
Sbjct: 203 D 203
>pdb|1NCH|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCH|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCG|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
Length = 110
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 7/89 (7%)
Query: 290 VKAKSFADREIRYTLKAQGQGA-----GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIV 344
V+ +S D+ + G GA G F I P SG + + K LD E + + H+ + V
Sbjct: 24 VRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAV 83
Query: 345 TATEDSGGFSTSVELTIRVTDVNDNAPKF 373
+ +++ I V D+NDN P+F
Sbjct: 84 DINGNQ--VENPIDIVINVIDMNDNRPEF 110
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 13/71 (18%)
Query: 504 SGQFVIEDITGVIRLNSKSISLDRD---KYELNVTAVDDGACCANGDQSVHTATAVVVVF 560
+G F+I I+G + S + LDR+ ++ L AVD NG+Q + +V+
Sbjct: 50 TGIFIINPISGQL---SVTKPLDRELIARFHLRAHAVD-----INGNQVENPID--IVIN 99
Query: 561 ITDVNDNKPVF 571
+ D+NDN+P F
Sbjct: 100 VIDMNDNRPEF 110
>pdb|2YQG|A Chain A, Solution Structure Of The First Cadherin Domain From Human
Desmoglein-2
Length = 123
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 590 PVIKVHA-TDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTNKVFDREGDDGKFVS 648
P+ K+H+ E++G+ KY+ F +++TGE+ + DRE + F
Sbjct: 30 PIAKIHSDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDRE--ETPFFL 87
Query: 649 VTIKATDQGEPSLEGVCSFTVEITDVNDNPPLF 681
+T A D ++E +++ D+NDN P+F
Sbjct: 88 LTGYALDARGNNVEKPLELRIKVLDINDNEPVF 120
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 265 NAGPNTLVTTVVASDKDGDNVSIISVKAKSFAD----REIRYTLKAQGQGA-----GTFN 315
++G T + ++G+++S + AK +D R ++ T K G+G G F
Sbjct: 5 SSGQKRAWITAPVALREGEDLSKKNPIAKIHSDLAEERGLKITYKYTGKGITEPPFGIFV 64
Query: 316 IGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGG--FSTSVELTIRVTDVNDNAPKF 373
+G + + LD R+ + L+ D+ G +EL I+V D+NDN P F
Sbjct: 65 FNKDTGELNVTSILD----REETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVF 120
>pdb|2OMX|B Chain B, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 108
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 290 VKAKSFADREIRYTLKAQGQGAGT-----FNIGPTSGIVKLAKELDFEDLRQPHVYSLIV 344
V+ KS D+E + GQGA T F I +G +K+ + LD E + Y+L
Sbjct: 26 VQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERI---ATYTLFS 82
Query: 345 TATEDSG-GFSTSVELTIRVTDVNDN 369
A +G +E+ I VTD NDN
Sbjct: 83 HAVSSNGNAVEDPMEILITVTDQNDN 108
>pdb|3K6D|A Chain A, Crystal Structure Of Xenopus Laevis T-Cadherin Ec1
Length = 99
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 20/38 (52%)
Query: 759 NEGKDFFEINLQSGEVFTKVVFDREKQGAYALEVEARD 796
E K F+IN SGEV DRE +Y L+VE D
Sbjct: 44 QEPKGIFKINENSGEVSVTKALDREAIPSYQLQVETTD 81
>pdb|2WBX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1
Length = 102
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 690 VKQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLD 748
+ +D +G+++ ++ A D D N +V+ +S +F ++P++G + L++PLD
Sbjct: 20 ISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEAS---RFFAVEPDTGVVWLRQPLD 72
>pdb|1CMX|A Chain A, Structural Basis For The Specificity Of Ubiquitin C-
Terminal Hydrolases
pdb|1CMX|C Chain C, Structural Basis For The Specificity Of Ubiquitin C-
Terminal Hydrolases
Length = 235
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 128 QARDPDSDHNIHYFIVRDRTGGRFEVDER--SGVVRTRGTDP 167
+A + +D N+HY + GG FE+D R SG + +DP
Sbjct: 155 EAPEATADTNLHYITYVEENGGIFELDGRNLSGPLYLGKSDP 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,923,144
Number of Sequences: 62578
Number of extensions: 1112814
Number of successful extensions: 2135
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1775
Number of HSP's gapped (non-prelim): 235
length of query: 817
length of database: 14,973,337
effective HSP length: 107
effective length of query: 710
effective length of database: 8,277,491
effective search space: 5877018610
effective search space used: 5877018610
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)