Query psy11097
Match_columns 817
No_of_seqs 481 out of 2864
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 17:53:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11097.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11097hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4289|consensus 100.0 1E-100 2E-105 859.8 63.3 660 25-813 185-880 (2531)
2 KOG4289|consensus 100.0 4.8E-97 1E-101 830.3 61.7 680 12-814 275-984 (2531)
3 KOG1219|consensus 100.0 3.3E-89 7.1E-94 788.1 70.2 629 39-748 2110-2845(4289)
4 KOG1219|consensus 100.0 4.6E-89 9.9E-94 786.9 71.0 710 4-803 1862-2764(4289)
5 cd00031 CA Cadherin repeat dom 100.0 2.8E-29 6.1E-34 253.8 25.4 197 577-813 2-198 (199)
6 cd00031 CA Cadherin repeat dom 100.0 1.7E-26 3.8E-31 233.4 28.3 195 110-365 2-199 (199)
7 PF00028 Cadherin: Cadherin do 99.6 2.9E-16 6.3E-21 137.7 8.1 92 686-813 1-93 (93)
8 PF00028 Cadherin: Cadherin do 99.6 3.7E-15 8E-20 130.7 13.9 92 577-672 1-93 (93)
9 KOG1834|consensus 99.6 5.6E-14 1.2E-18 152.1 18.0 205 560-812 22-242 (952)
10 smart00112 CA Cadherin repeats 99.6 3E-14 6.4E-19 120.8 11.0 79 597-679 1-79 (79)
11 KOG1834|consensus 99.5 3.2E-12 6.9E-17 138.6 19.9 212 90-364 20-243 (952)
12 smart00112 CA Cadherin repeats 99.4 2.5E-12 5.5E-17 108.9 10.5 77 130-251 1-79 (79)
13 PF08758 Cadherin_pro: Cadheri 97.1 0.0025 5.4E-08 54.6 7.7 79 369-452 2-80 (90)
14 PF08266 Cadherin_2: Cadherin- 97.0 0.00055 1.2E-08 57.9 2.8 66 259-336 4-69 (84)
15 PF08758 Cadherin_pro: Cadheri 96.8 0.0095 2.1E-07 51.1 8.9 81 250-354 3-83 (90)
16 PF08266 Cadherin_2: Cadherin- 96.2 0.0054 1.2E-07 51.9 3.7 59 111-170 4-66 (84)
17 TIGR01965 VCBS_repeat VCBS rep 95.3 0.18 3.9E-06 43.9 9.7 89 592-694 2-98 (99)
18 smart00736 CADG Dystroglycan-t 95.1 0.35 7.5E-06 42.3 11.2 73 595-676 23-96 (97)
19 smart00736 CADG Dystroglycan-t 94.8 0.33 7.2E-06 42.4 10.4 64 299-368 31-96 (97)
20 TIGR01965 VCBS_repeat VCBS rep 94.4 0.3 6.4E-06 42.6 8.7 92 273-387 2-98 (99)
21 PF13750 Big_3_3: Bacterial Ig 91.4 14 0.0003 35.5 16.5 132 524-672 11-148 (158)
22 TIGR00845 caca sodium/calcium 90.1 22 0.00048 43.6 19.8 192 564-768 395-615 (928)
23 TIGR00845 caca sodium/calcium 87.6 81 0.0018 38.9 22.6 77 96-183 395-475 (928)
24 PF13750 Big_3_3: Bacterial Ig 87.4 28 0.00061 33.4 15.4 109 338-452 15-136 (158)
25 PF05345 He_PIG: Putative Ig d 82.9 3.9 8.5E-05 30.7 5.5 38 147-185 12-49 (49)
26 PF05345 He_PIG: Putative Ig d 80.9 7.2 0.00016 29.3 6.3 35 762-798 13-48 (49)
27 KOG3597|consensus 71.0 70 0.0015 36.0 13.2 157 235-415 24-194 (442)
28 PF03160 Calx-beta: Calx-beta 62.8 85 0.0019 27.1 9.9 52 668-723 2-53 (100)
29 TIGR03660 T1SS_rpt_143 T1SS-14 62.2 1E+02 0.0023 28.7 10.6 60 322-387 69-128 (137)
30 PF03160 Calx-beta: Calx-beta 61.5 1.1E+02 0.0023 26.5 10.9 52 558-614 2-53 (100)
31 KOG3597|consensus 60.1 1.6E+02 0.0035 33.2 13.4 159 554-723 25-195 (442)
32 PF07495 Y_Y_Y: Y_Y_Y domain; 58.9 55 0.0012 25.7 7.3 60 604-672 7-66 (66)
33 COG2706 3-carboxymuconate cycl 56.7 37 0.0008 36.5 7.4 63 713-777 254-330 (346)
34 PF13753 SWM_repeat: Putative 54.8 3E+02 0.0065 29.6 15.5 16 171-186 11-26 (317)
35 PF07495 Y_Y_Y: Y_Y_Y domain; 47.1 61 0.0013 25.5 5.8 56 300-364 10-66 (66)
36 PF02494 HYR: HYR domain; Int 42.2 2E+02 0.0043 23.8 9.2 14 173-186 58-71 (81)
37 PF13754 Big_3_4: Bacterial Ig 40.4 44 0.00096 25.5 3.8 32 784-815 22-54 (54)
38 PF12245 Big_3_2: Bacterial Ig 38.1 1E+02 0.0022 24.1 5.6 18 169-186 20-37 (60)
39 TIGR03660 T1SS_rpt_143 T1SS-14 32.9 2.1E+02 0.0046 26.7 7.7 56 633-694 72-128 (137)
40 PF13754 Big_3_4: Bacterial Ig 31.9 84 0.0018 24.0 4.1 26 338-363 24-49 (54)
41 PF02494 HYR: HYR domain; Int 25.4 3.8E+02 0.0083 22.0 9.3 25 338-363 57-81 (81)
42 PF14539 DUF4442: Domain of un 21.8 1.6E+02 0.0034 27.2 4.8 45 319-363 88-132 (132)
No 1
>KOG4289|consensus
Probab=100.00 E-value=1e-100 Score=859.84 Aligned_cols=660 Identities=30% Similarity=0.458 Sum_probs=595.6
Q ss_pred eeeeecccccceeeEeeeeccCCC--CcCcEEecCC--eEEEeeeccccccceeeee--e---cCCCCCceEEEEEEEEe
Q psy11097 25 RYKIMNSKYLMNCIVNESLKQNMT--SIPWIQITDD--AFIIVVNWVIEQLLDRDVI--N---HEVVHTDNQRVIIHVKD 95 (817)
Q Consensus 25 ~~~~~~~~~~~~~~v~~~~~~~~~--~~~~f~i~~~--~l~~~~~lD~E~~~~~~~~--~---~~~~~~~~~~v~I~V~D 95 (817)
....+++| ...+.|++.+-++ +..+|.||+- .|++++.||||.+..|.+. + .++..+++++|+|.|.|
T Consensus 185 sv~A~~~~---a~rl~Ysm~al~dsRS~~lFslD~~sG~irta~~lDREt~e~HvlrVtA~d~~~P~~SAtttv~V~V~D 261 (2531)
T KOG4289|consen 185 SVKASDPD---AGRLYYSMVALFDSRSQNLFSLDPMSGAIRTAKSLDRETKETHVLRVTAQDHGDPRRSATTTVTVLVLD 261 (2531)
T ss_pred EEEecCCC---cCceEEEeeeccchhccccEeeccccccchhhhhhhhhhhheeEEEEEeeecCCCcccceeEEEEEEee
Confidence 34455555 4577888765443 5669999985 9999999999999998665 3 34668899999999999
Q ss_pred cCCCCCeeecCCCCeEEEEeccCCCCceEEEEEeecCCCCcc--EEEEEEecCCCCceEEEcceeEEEeccCCCcccccE
Q psy11097 96 VNDESPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDSDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDPFQLDQE 173 (817)
Q Consensus 96 vNDn~P~F~~~~~~~~~~v~E~~~~gt~v~~v~A~D~D~g~~--~~y~l~~~~~~~~F~Id~~tG~i~~~~~ld~e~~~~ 173 (817)
+|||.|+|++.. |..++.||.+.|+.|++|+|+|.|++.| +.|++..+++...|+||+.+|.|++.+++|+|....
T Consensus 262 ~nDhsPvFEq~~--Y~e~lREn~evGy~vLtvrAtD~Dsp~Nani~Yrl~eg~~~~~f~in~rSGvI~T~a~lDRE~~~~ 339 (2531)
T KOG4289|consen 262 TNDHSPVFEQDE--YREELRENLEVGYEVLTVRATDGDSPPNANIRYRLLEGNAKNVFEINPRSGVISTRAPLDREELES 339 (2531)
T ss_pred cCCCCcccchhH--HHHHHhhccccCceEEEEEeccCCCCCCCceEEEecCCCccceeEEcCccceeeccCccCHHhhhh
Confidence 999999999876 5677999999999999999999999876 999999988889999999999999999999999999
Q ss_pred EEEEEEEEecCCcccccccccCccEEEEEeCCCCCCeeeccceEEEecccccCCCCCCcceEEEEEEEEEeeCCCCCCcC
Q psy11097 174 YVLYVKAEDQNGRKDERKFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDTEYPSMTGTATVRIYTKNKNDEEPKF 253 (817)
Q Consensus 174 y~l~v~a~D~~g~~~~~~~~~~~~~~~~i~~~~~~p~f~~~~y~~~i~e~~~~d~~~p~~s~~~~v~I~V~DvNDn~P~f 253 (817)
|.|.|.|+|+|-. +--.++.|.|+|.|+|||+|+|
T Consensus 340 y~L~VeAsDqG~~---------------------------------------------pgp~Ta~V~itV~D~NDNaPqF 374 (2531)
T KOG4289|consen 340 YQLDVEASDQGRP---------------------------------------------PGPRTAMVEITVEDENDNAPQF 374 (2531)
T ss_pred eEEEEEeccCCCC---------------------------------------------CCCceEEEEEEEEecCCCCccc
Confidence 9999999997632 1123899999999999999999
Q ss_pred cCceeeEEEeCCCCCCcEEEEEEEEeCCCCCceeEEEeecccCCccEEEEEEeCCCCCCCeEEeCceeEEEeCccCCccc
Q psy11097 254 SQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFED 333 (817)
Q Consensus 254 ~~~~y~~~V~En~~~gt~v~~v~A~D~D~~~~~i~~~~~~~~~~~~i~y~l~~~g~~~~~F~Id~~tG~i~~~~~LD~E~ 333 (817)
....|.+.|.|+..++++|++|+|+|.|.+ .|+.++|+|. +|++.+.|.||..||+|.+..+||+|.
T Consensus 375 se~~Yvvqv~Edvt~~avvlrV~AtDrD~g------------~Ng~VHYsi~-Sgn~~G~f~id~~tGel~vv~plD~e~ 441 (2531)
T KOG4289|consen 375 SEKRYVVQVREDVTPPAVVLRVTATDRDKG------------TNGKVHYSIA-SGNGRGQFYIDSLTGELDVVEPLDFEN 441 (2531)
T ss_pred cccceEEEecccCCCCceEEEEEecccCCC------------cCceEEEEee-ccCccccEEEecccceEEEeccccccC
Confidence 999999999999999999999999999988 4788999997 689999999999999999999999997
Q ss_pred cCCCeEEEEEEEEEeCCC--CceEEEEEEEEEEeeCCCCCcccCCCcceEEeeCCCCCCcEEEEEEEEeCCCCCCceEEE
Q psy11097 334 LRQPHVYSLIVTATEDSG--GFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSGTNAEIEY 411 (817)
Q Consensus 334 ~~~~~~y~l~V~a~d~~g--~~~~~~~v~I~V~DvNDn~P~f~~~~y~~~~V~E~~~~Gt~v~~v~A~D~D~g~n~~i~y 411 (817)
..|++.|+|.| +| .++.+.-+.|+|+|+|||+|.|...+++. +|.|+.+.|..+.++.|.|+|+|.|+.+.|
T Consensus 442 ----~~ytl~IrAqD-ggrPpLsn~sgl~iqVlDINDhaPifvstpfq~-tvlEnv~lg~~v~~vqaidadsg~na~l~y 515 (2531)
T KOG4289|consen 442 ----SEYTLRIRAQD-GGRPPLSNTSGLVIQVLDINDHAPIFVSTPFQA-TVLENVPLGYLVCHVQAIDADSGENARLHY 515 (2531)
T ss_pred ----CeeEEEEEccc-CCCCCccCCCceEEEEEecCCCCceeEechhhh-hhhhcccccceEEEEecccCCCCcccceee
Confidence 47999999995 44 47877778899999999999999999987 899999999999999999999999999999
Q ss_pred EEec-CceEEcc-ceeEEEeeecccCCCCcEEEEEEEEecCCc-------eEEEEEEeCCCCCCccCCCccceeEeeccC
Q psy11097 412 HVSD-DNFAVDS-NGVINNHKTLDADNNNAYYEFVITAKDKDV-------DVELDVVDRNNKPPLWDNAIYGPIHIRENV 482 (817)
Q Consensus 412 ~i~~-~~F~I~~-~G~i~~~~~ld~e~~~~~~~l~V~a~D~g~-------~v~I~V~d~Nd~~P~f~~~~y~~i~v~E~~ 482 (817)
++.+ ++|.|+. +|+|++.+.||||+. ..|.|.|.|+|.|. .|.|++.|+|||.|.|+++.|.. .+.|+.
T Consensus 516 ~laG~~pf~I~~~SG~Itvtk~ldrEt~-~~ysl~V~ard~gtp~l~tstsI~Vtv~dvndndP~Ft~~eytl-~inED~ 593 (2531)
T KOG4289|consen 516 SLAGVGPFQINNGSGWITVTKELDRETV-EHYSLGVEARDHGTPPLSTSTSISVTVLDVNDNDPTFTQKEYTL-RINEDA 593 (2531)
T ss_pred eeccCCCeeEecCCceEEEeeccccccc-ceEEEEEEEcCCCCCcccccceEEEEecccCCCCCccccCceEE-EecCCc
Confidence 9987 7999998 899999999999998 58999999999997 79999999999999999999998 999999
Q ss_pred CcCeEEEEEEE---------EEEeecCCcccccEEEEccc--cEEEEcccccccccc---cEEEEEEEEeCCccccCCCC
Q psy11097 483 TVSTVVTSVKA---------RFGFVGGSTSSGQFVIEDIT--GVIRLNSKSISLDRD---KYELNVTAVDDGACCANGDQ 548 (817)
Q Consensus 483 ~~g~~v~~v~a---------~~~~~~~~~~~~~F~Id~~t--G~i~~~~~~~~ld~e---~y~l~V~a~D~~~~~~~~~~ 548 (817)
+.|+.|.+++| +|.+.++ +....|.|+... |.|.+.. ++|+. +|.+.|+|+|++
T Consensus 594 pvgsSI~tvtAvD~d~~s~ityqi~g~-ntrn~Fsi~si~g~Glitlal---p~dkKqe~~~vl~vtAtDg~-------- 661 (2531)
T KOG4289|consen 594 PVGSSIVTVTAVDRDANSVITYQITGG-NTRNRFSISSIGGGGLITLAL---PLDKKQERQYVLAVTATDGT-------- 661 (2531)
T ss_pred cccceEEEEEEeccccccceEEEecCC-cccccceeeccCCcceEEeec---chhhcccceEEEEEEecCCc--------
Confidence 99999999999 5666544 667899999876 5677765 45653 799999999954
Q ss_pred CcceeeEEEEEEEeecCCCCCccccCCCceeEEecCCCCCceEEEEEEecCCCCCCceEEEEEEecCCCCCccEEEeccc
Q psy11097 549 SVHTATAVVVVFITDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEET 628 (817)
Q Consensus 549 ~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~~v~En~~~gt~v~~v~A~D~D~g~n~~v~y~l~~~~~~~~~~F~Id~~t 628 (817)
+..++.|.|.|.|.|-+.|.|.. ..|.++|.|..|.|+.|.+++|+|.|.|+|++|+| |... ..|+||+.+
T Consensus 662 --l~d~~~V~v~I~danThrpvFqs-~pfTvsI~e~rP~G~tvvtlsasd~D~geNARI~y-~led-----~~Frid~ds 732 (2531)
T KOG4289|consen 662 --LQDTCSVNVNITDANTHRPVFQS-SPFTVSINEDRPLGTTVVTLSASDEDTGENARITY-ILED-----EAFRIDPDS 732 (2531)
T ss_pred --cccceEEEEEeeecccCCccccc-CCeeEeeccCCcCCceeEEEecccCCCCccceEEE-Eecc-----cceeecCCC
Confidence 46788999999999999999997 89999999999999999999999999999999999 4432 269999999
Q ss_pred ceEEecccccccCCCCcEEEEEEEEEeCCCCCceeEEEEEEEEEecCCCCCccCCCceEEEEeCCCCCCcEEEEEEEEeC
Q psy11097 629 GEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDE 708 (817)
Q Consensus 629 G~i~~~~~lD~E~~~~~~~~l~V~a~D~g~p~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~~~g~~v~~v~A~D~ 708 (817)
|.+++...||||.+ ..|.+.++|.|.|.|++..+.+|.|.|.|+|||+|+|..+.|.++|.|++|+++.|++|+|+|+
T Consensus 733 g~i~t~~~ld~edq--vtytl~itA~D~~~pq~adtttveV~v~diNDnaPqf~assyt~sV~Ed~Pv~TsvlQVSatDa 810 (2531)
T KOG4289|consen 733 GAIYTQAELDYEDQ--VTYTLAITARDNGIPQKADTTTVEVLVNDINDNAPQFLASSYTGSVFEDAPVFTSVLQVSATDA 810 (2531)
T ss_pred CceEEeeeeecccc--eeeEeeeeecCCCCCCcCccEEEEEEeecccccCcccchhhceeEeecCCCCcceEEEEEEecc
Confidence 99999999999987 5699999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEecCcCCCCCcceEEeCCeeEEEEeeeceEEEEEeeCCCCCCcccEEEeCceeEEEEcccCCcccccEE
Q psy11097 709 DADNNGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLDVYYYIVDSPRNEGKDFFEINLQSGEVFTKVVFDREKQGAY 788 (817)
Q Consensus 709 D~g~n~~i~Y~l~~~~~~~~~~~F~Id~~tG~i~~~~~ld~~y~~~~~~~~~~~~~F~Id~~tG~l~~~~~LDrE~~~~y 788 (817)
|.|.||.+.|.+.++. .+.+.|.|++++|.|++.+.||||..+.|
T Consensus 811 D~g~Ng~v~y~~qg~~-----------------------------------d~p~~F~IEptSGviRtl~rLdRE~~avy 855 (2531)
T KOG4289|consen 811 DSGPNGRVYYTFQGGD-----------------------------------DGPGDFYIEPTSGVIRTLRRLDRENVAVY 855 (2531)
T ss_pred CCCCCceEEEEecCCC-----------------------------------CCCCceEEccCcceeehhhhhcchheeEE
Confidence 9999999999887642 23467999999999999999999999999
Q ss_pred EEEEEEEeCCCCCCCCCCCCCCccc
Q psy11097 789 ALEVEARDGAPSARPNSDGEPNSAC 813 (817)
Q Consensus 789 ~l~V~a~D~g~p~~~~~~~~~v~v~ 813 (817)
.|.+.|+|.|.|+++.+..+||.|.
T Consensus 856 ~L~a~avDrg~p~ls~~~eItvtvl 880 (2531)
T KOG4289|consen 856 VLAAYAVDRGNPPLSAPVEITVTVL 880 (2531)
T ss_pred EEEEEEeeCCCCCcCCceEEEEEEE
Confidence 9999999999999999998888763
No 2
>KOG4289|consensus
Probab=100.00 E-value=4.8e-97 Score=830.35 Aligned_cols=680 Identities=28% Similarity=0.422 Sum_probs=598.9
Q ss_pred chHHHhhhhceeeeee--eecccccceeeEeeeeccCCCCcCcEEecCC--eEEEeeeccccccceeeee--ecCCC---
Q psy11097 12 NESLKQNMTRYRTRYK--IMNSKYLMNCIVNESLKQNMTSIPWIQITDD--AFIIVVNWVIEQLLDRDVI--NHEVV--- 82 (817)
Q Consensus 12 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~f~i~~~--~l~~~~~lD~E~~~~~~~~--~~~~~--- 82 (817)
+|.|++++--.-.-++ ..|.|.+.|+.+.|.+.++ .....|+|++. .|.++.+||||++..|.+. +++.+
T Consensus 275 ~e~lREn~evGy~vLtvrAtD~Dsp~Nani~Yrl~eg-~~~~~f~in~rSGvI~T~a~lDRE~~~~y~L~VeAsDqG~~p 353 (2531)
T KOG4289|consen 275 REELRENLEVGYEVLTVRATDGDSPPNANIRYRLLEG-NAKNVFEINPRSGVISTRAPLDREELESYQLDVEASDQGRPP 353 (2531)
T ss_pred HHHHhhccccCceEEEEEeccCCCCCCCceEEEecCC-CccceeEEcCccceeeccCccCHHhhhheEEEEEeccCCCCC
Confidence 4677777654443334 6788999999999998775 44678999975 8999999999999999765 44432
Q ss_pred CCceEEEEEEEEecCCCCCeeecCCCCeEEEEeccCCCCceEEEEEeecCCCCcc--EEEEEEecCCCCceEEEcceeEE
Q psy11097 83 HTDNQRVIIHVKDVNDESPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDSDHN--IHYFIVRDRTGGRFEVDERSGVV 160 (817)
Q Consensus 83 ~~~~~~v~I~V~DvNDn~P~F~~~~~~~~~~v~E~~~~gt~v~~v~A~D~D~g~~--~~y~l~~~~~~~~F~Id~~tG~i 160 (817)
...+++|.|+|.|+|||+|+|..+. |...|.|+..++++|++|+|+|.|.|.| ++|+|.+++.-|.|.||..||+|
T Consensus 354 gp~Ta~V~itV~D~NDNaPqFse~~--Yvvqv~Edvt~~avvlrV~AtDrD~g~Ng~VHYsi~Sgn~~G~f~id~~tGel 431 (2531)
T KOG4289|consen 354 GPRTAMVEITVEDENDNAPQFSEKR--YVVQVREDVTPPAVVLRVTATDRDKGTNGKVHYSIASGNGRGQFYIDSLTGEL 431 (2531)
T ss_pred CCceEEEEEEEEecCCCCccccccc--eEEEecccCCCCceEEEEEecccCCCcCceEEEEeeccCccccEEEecccceE
Confidence 3459999999999999999999765 6777999999999999999999999998 89999999999999999999999
Q ss_pred EeccCCCcccccEEEEEEEEEecCCcccccccccCccEEEEEeCCCCCCeeeccceEEEecccccCCCCCCcceEEEEEE
Q psy11097 161 RTRGTDPFQLDQEYVLYVKAEDQNGRKDERKFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDTEYPSMTGTATVR 240 (817)
Q Consensus 161 ~~~~~ld~e~~~~y~l~v~a~D~~g~~~~~~~~~~~~~~~~i~~~~~~p~f~~~~y~~~i~e~~~~d~~~p~~s~~~~v~ 240 (817)
.+..+||||.. +|+|.|+|.|+| .|+|+.+.-+.
T Consensus 432 ~vv~plD~e~~-~ytl~IrAqDgg---------------------------------------------rPpLsn~sgl~ 465 (2531)
T KOG4289|consen 432 DVVEPLDFENS-EYTLRIRAQDGG---------------------------------------------RPPLSNTSGLV 465 (2531)
T ss_pred EEeccccccCC-eeEEEEEcccCC---------------------------------------------CCCccCCCceE
Confidence 99999999987 999999999954 46788888888
Q ss_pred EEEeeCCCCCCcCcCceeeEEEeCCCCCCcEEEEEEEEeCCCCCceeEEEeecccCCccEEEEEEeCCCCCCCeEEeCce
Q psy11097 241 IYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGAGTFNIGPTS 320 (817)
Q Consensus 241 I~V~DvNDn~P~f~~~~y~~~V~En~~~gt~v~~v~A~D~D~~~~~i~~~~~~~~~~~~i~y~l~~~g~~~~~F~Id~~t 320 (817)
|+|+|+|||+|.|....+.++|.||.+.|..|..+.|.|+|.+. |+.+.|++. +.+.|.|+..+
T Consensus 466 iqVlDINDhaPifvstpfq~tvlEnv~lg~~v~~vqaidadsg~------------na~l~y~la----G~~pf~I~~~S 529 (2531)
T KOG4289|consen 466 IQVLDINDHAPIFVSTPFQATVLENVPLGYLVCHVQAIDADSGE------------NARLHYSLA----GVGPFQINNGS 529 (2531)
T ss_pred EEEEecCCCCceeEechhhhhhhhcccccceEEEEecccCCCCc------------ccceeeeec----cCCCeeEecCC
Confidence 99999999999999999999999999999999999999999984 688999986 34589999999
Q ss_pred eEEEeCccCCccccCCCeEEEEEEEEEeCCC-CceEEEEEEEEEEeeCCCCCcccCCCcceEEeeCCCCCCcEEEEEEEE
Q psy11097 321 GIVKLAKELDFEDLRQPHVYSLIVTATEDSG-GFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKAT 399 (817)
Q Consensus 321 G~i~~~~~LD~E~~~~~~~y~l~V~a~d~~g-~~~~~~~v~I~V~DvNDn~P~f~~~~y~~~~V~E~~~~Gt~v~~v~A~ 399 (817)
|+|++.+.||||+. ..|.|.|.|+|.+. .+++++.|.|.|.|+|||.|.|+++.|.. .+.|+.+.|+.|.+|+|+
T Consensus 530 G~Itvtk~ldrEt~---~~ysl~V~ard~gtp~l~tstsI~Vtv~dvndndP~Ft~~eytl-~inED~pvgsSI~tvtAv 605 (2531)
T KOG4289|consen 530 GWITVTKELDRETV---EHYSLGVEARDHGTPPLSTSTSISVTVLDVNDNDPTFTQKEYTL-RINEDAPVGSSIVTVTAV 605 (2531)
T ss_pred ceEEEeeccccccc---ceEEEEEEEcCCCCCcccccceEEEEecccCCCCCccccCceEE-EecCCccccceEEEEEEe
Confidence 99999999999985 68999999995332 48889999999999999999999999986 899999999999999999
Q ss_pred eCCCCCCceEEEEEecC----ceEEcc---ceeEEEeeecccCCCCcEEEEEEEEecCCc----eEEEEEEeCCCCCCcc
Q psy11097 400 DADSGTNAEIEYHVSDD----NFAVDS---NGVINNHKTLDADNNNAYYEFVITAKDKDV----DVELDVVDRNNKPPLW 468 (817)
Q Consensus 400 D~D~g~n~~i~y~i~~~----~F~I~~---~G~i~~~~~ld~e~~~~~~~l~V~a~D~g~----~v~I~V~d~Nd~~P~f 468 (817)
|.|. +..++|.|.++ .|.|++ .|.|++.-++|+... .+|.+.|+|+|++. .|.|.|.|.|-+.|.|
T Consensus 606 D~d~--~s~ityqi~g~ntrn~Fsi~si~g~Glitlalp~dkKqe-~~~vl~vtAtDg~l~d~~~V~v~I~danThrpvF 682 (2531)
T KOG4289|consen 606 DRDA--NSVITYQITGGNTRNRFSISSIGGGGLITLALPLDKKQE-RQYVLAVTATDGTLQDTCSVNVNITDANTHRPVF 682 (2531)
T ss_pred cccc--ccceEEEecCCcccccceeeccCCcceEEeecchhhccc-ceEEEEEEecCCccccceEEEEEeeecccCCccc
Confidence 9997 67899999875 699987 388999999999876 58999999999654 7889999999999999
Q ss_pred CCCccceeEeeccCCcCeEEEEEEEEEEeecCC------cccccEEEEccccEEEEcccccccccccEEEEEEEEeCCcc
Q psy11097 469 DNAIYGPIHIRENVTVSTVVTSVKARFGFVGGS------TSSGQFVIEDITGVIRLNSKSISLDRDKYELNVTAVDDGAC 542 (817)
Q Consensus 469 ~~~~y~~i~v~E~~~~g~~v~~v~a~~~~~~~~------~~~~~F~Id~~tG~i~~~~~~~~ld~e~y~l~V~a~D~~~~ 542 (817)
....|.+ +|+|+.|.|+.|..++|.....+.+ .....|.||+.+|.+++...++..|+-.|.+.++|.|.+.
T Consensus 683 qs~pfTv-sI~e~rP~G~tvvtlsasd~D~geNARI~y~led~~Frid~dsg~i~t~~~ld~edqvtytl~itA~D~~~- 760 (2531)
T KOG4289|consen 683 QSSPFTV-SINEDRPLGTTVVTLSASDEDTGENARITYILEDEAFRIDPDSGAIYTQAELDYEDQVTYTLAITARDNGI- 760 (2531)
T ss_pred ccCCeeE-eeccCCcCCceeEEEecccCCCCccceEEEEecccceeecCCCCceEEeeeeecccceeeEeeeeecCCCC-
Confidence 9999998 9999999999999999932111110 1234599999999999998655666669999999999987
Q ss_pred ccCCCCCcceeeEEEEEEEeecCCCCCccccCCCceeEEecCCCCCceEEEEEEecCCCCCCceEEEEEEecCCCCCccE
Q psy11097 543 CANGDQSVHTATAVVVVFITDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAKF 622 (817)
Q Consensus 543 ~~~~~~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~~v~En~~~gt~v~~v~A~D~D~g~n~~v~y~l~~~~~~~~~~F 622 (817)
|+...+++|.|.|.|+|||+|+|.. +.|.++|.|+.|++|.+++|+|+|+|.|.|+.+.|.+..+.+ ..+.|
T Consensus 761 ------pq~adtttveV~v~diNDnaPqf~a-ssyt~sV~Ed~Pv~TsvlQVSatDaD~g~Ng~v~y~~qg~~d-~p~~F 832 (2531)
T KOG4289|consen 761 ------PQKADTTTVEVLVNDINDNAPQFLA-SSYTGSVFEDAPVFTSVLQVSATDADSGPNGRVYYTFQGGDD-GPGDF 832 (2531)
T ss_pred ------CCcCccEEEEEEeecccccCcccch-hhceeEeecCCCCcceEEEEEEeccCCCCCceEEEEecCCCC-CCCce
Confidence 5678899999999999999999997 899999999999999999999999999999999998876543 44689
Q ss_pred EEecccceEEecccccccCCCCcEEEEEEEEEeCCCCCceeEEEEEEEEEecCCCCCccCCCceEEEEeCCCCCCcEEEE
Q psy11097 623 TVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILR 702 (817)
Q Consensus 623 ~Id~~tG~i~~~~~lD~E~~~~~~~~l~V~a~D~g~p~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~~~g~~v~~ 702 (817)
.|++.+|.|++.+.||||.. ..|.|.+.|+|.|.|++++.+.|+|+|+|+|||||+|.+..|...|.||.++|+.+++
T Consensus 833 ~IEptSGviRtl~rLdRE~~--avy~L~a~avDrg~p~ls~~~eItvtvldvNDnaPvfe~~e~e~~I~enspvgs~va~ 910 (2531)
T KOG4289|consen 833 YIEPTSGVIRTLRRLDRENV--AVYVLAAYAVDRGNPPLSAPVEITVTVLDVNDNAPVFEQDELELFIEENSPVGSVVAL 910 (2531)
T ss_pred EEccCcceeehhhhhcchhe--eEEEEEEEEeeCCCCCcCCceEEEEEEEecCCCCCCCCCcceeeEEeecCccceeeEE
Confidence 99999999999999999998 5699999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCceEEEEEecCcCCCCCcceEEeCCeeEEEEeeeceEEEEEeeCCCCCCcccEEEeCceeEEEEcccCCc
Q psy11097 703 VSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLDVYYYIVDSPRNEGKDFFEINLQSGEVFTKVVFDR 782 (817)
Q Consensus 703 v~A~D~D~g~n~~i~Y~l~~~~~~~~~~~F~Id~~tG~i~~~~~ld~~y~~~~~~~~~~~~~F~Id~~tG~l~~~~~LDr 782 (817)
++|.|+|.|+|++|.|+|.++ +....|.++...|+|.+...||+
T Consensus 911 i~a~dpdEG~NA~IsYqIvgg------------------------------------~d~~~fq~de~~~~lla~~efdy 954 (2531)
T KOG4289|consen 911 ITADDPDEGPNAHISYQIVGG------------------------------------NDPELFQLDEFSGELLALVEFDY 954 (2531)
T ss_pred EEccCCCcCCcceEEEeeccC------------------------------------ccHHHHHHHHhhhhhhhheeehh
Confidence 999999999999999999874 22456777778888888889999
Q ss_pred c-cccEEEEEEEEEeCCCCCCCCCCCCCCcccc
Q psy11097 783 E-KQGAYALEVEARDGAPSARPNSDGEPNSACT 814 (817)
Q Consensus 783 E-~~~~y~l~V~a~D~g~p~~~~~~~~~v~v~~ 814 (817)
| +...|.+.++|+=. ++.+..++.|+|..
T Consensus 955 ef~~~eyv~~~qats~---plvS~atv~i~vsd 984 (2531)
T KOG4289|consen 955 EFTRVEYVLVVQATSA---PLVSRATVHIRVSD 984 (2531)
T ss_pred hhccceeeEEeecccc---ccccceeEEEEecc
Confidence 9 88899999888643 55666666666543
No 3
>KOG1219|consensus
Probab=100.00 E-value=3.3e-89 Score=788.12 Aligned_cols=629 Identities=29% Similarity=0.436 Sum_probs=542.3
Q ss_pred EeeeeccCCCCcCcEEecC--CeEEEeeeccccccceeeee--ecCC--CCCceEEEEEEEEecCCCCCeeecCCCCeEE
Q psy11097 39 VNESLKQNMTSIPWIQITD--DAFIIVVNWVIEQLLDRDVI--NHEV--VHTDNQRVIIHVKDVNDESPYFINRPLPMQA 112 (817)
Q Consensus 39 v~~~~~~~~~~~~~f~i~~--~~l~~~~~lD~E~~~~~~~~--~~~~--~~~~~~~v~I~V~DvNDn~P~F~~~~~~~~~ 112 (817)
|.|+|..+. ...|+++- |.|.+..+||||+...|.+. +.+. +..+.+.|.|.|.|+|||||+|.+. .|.+
T Consensus 2110 v~YsIldg~--~slFtvnf~TG~i~v~~pLd~ea~t~h~l~ieAtd~~~p~~Aea~VeIiV~dIndn~PvFeql--sYt~ 2185 (4289)
T KOG1219|consen 2110 VTYSILDGN--TSLFTVNFTTGVILVLIPLDREASTLHELLIEATDAGIPLSAEAKVEIIVGDINDNPPVFEQL--SYTI 2185 (4289)
T ss_pred eEEEEecCC--cceEEEecccceEEeccccccccccceEEEEEEeccCCCcceeeEEEEEecccCCCCchhhee--eEEE
Confidence 899988754 45788886 59999999999999999765 4432 4778899999999999999999875 4789
Q ss_pred EEeccCCCCceEEEEEeecCCCCccEEEEEEecC-CCCceEEEcceeEEEeccCCCcccccEEEEEEEEEecCCcccccc
Q psy11097 113 VVQLNAPPNTPVFTLQARDPDSDHNIHYFIVRDR-TGGRFEVDERSGVVRTRGTDPFQLDQEYVLYVKAEDQNGRKDERK 191 (817)
Q Consensus 113 ~v~E~~~~gt~v~~v~A~D~D~g~~~~y~l~~~~-~~~~F~Id~~tG~i~~~~~ld~e~~~~y~l~v~a~D~~g~~~~~~ 191 (817)
+++|+.++|+.|+++.|+|.|+...+.|+|.++. ....|+|++.||||++.+.||||..++|.+.|+|+|+|.
T Consensus 2186 sisE~s~igt~viqilATdsDsn~~isYsl~g~s~~sk~f~In~sTG~it~~g~ldyE~~q~f~~fvratdggk------ 2259 (4289)
T KOG1219|consen 2186 SISENSKIGTKVIQILATDSDSNREISYSLEGNSEISKPFRINVSTGWITVAGKLDYEENQEFRFFVRATDGGK------ 2259 (4289)
T ss_pred EccCCCccCceEEEEEeccCCCCCceEEEeecCCccccceEEecccceEEEeeecChhhcceEEEEEEEccCCC------
Confidence 9999999999999999999999888999998632 236899999999999999999999999999999999652
Q ss_pred cccCccEEEEEeCCCCCCeeeccceEEEecccccCCCCCCcceEEEEEEEEEeeCCCCCCcCcCceeeEEEeCCCCCCcE
Q psy11097 192 FQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDTEYPSMTGTATVRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTL 271 (817)
Q Consensus 192 ~~~~~~~~~~i~~~~~~p~f~~~~y~~~i~e~~~~d~~~p~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~En~~~gt~ 271 (817)
| +++.+.|.|.|.|+|||+|.|.+..|.+.|+|.++-|.+
T Consensus 2260 ---------------------------------------~-lSseviv~V~VeD~Ndn~Pef~q~~~ea~vsd~a~~g~f 2299 (4289)
T KOG1219|consen 2260 ---------------------------------------P-LSSEVIVEVHVEDFNDNPPEFNQRNYEAFVSDPARSGHF 2299 (4289)
T ss_pred ---------------------------------------c-ccccEEEEEEehhcCCCCchhccccceeecCCCccceeE
Confidence 3 788899999999999999999999999999999999999
Q ss_pred EEEEEEEeCCCCCc----------------eeEEE----e----------------------------------------
Q psy11097 272 VTTVVASDKDGDNV----------------SIISV----K---------------------------------------- 291 (817)
Q Consensus 272 v~~v~A~D~D~~~~----------------~i~~~----~---------------------------------------- 291 (817)
|..+.|.|+|..+. +++++ +
T Consensus 2300 it~v~a~D~Dssd~lk~ey~~~~~l~~s~~G~iTlfNl~k~~l~~s~~lrv~vsD~v~~at~~vl~~~~~~n~~~~lvek 2379 (4289)
T KOG1219|consen 2300 ITVVNAHDLDSSDHLKLEYNSNHFLILSENGIITLFNLLKSPLQTSYPLRVTVSDGVFRATMEVLFHPHSRNHFSELVEK 2379 (4289)
T ss_pred EEEEEeccCCccchhhhhhcccceeeeccCceEEehhhcccccccccceeeeeccCcceeeeEEEEEecCcccchhhhhc
Confidence 99999999997641 22220 0
Q ss_pred --------------ecccCCccEEEEEEeCCCCCCCeEEeCceeEEEeCccCCccccCCCeEEEEEEEEEeCCCCceEEE
Q psy11097 292 --------------AKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSV 357 (817)
Q Consensus 292 --------------~~~~~~~~i~y~l~~~g~~~~~F~Id~~tG~i~~~~~LD~E~~~~~~~y~l~V~a~d~~g~~~~~~ 357 (817)
+....++.+.|.+. ..-.+..|.|++. |.|.+.+.||||... ...+.+.+.|. |+||+.+-+
T Consensus 2380 a~l~Tv~~~~~~~~~~f~~~gt~~~~si-~s~~sd~~~in~~-GqI~t~~kld~e~s~-~~vi~i~v~a~-Da~gr~af~ 2455 (4289)
T KOG1219|consen 2380 ADLVTVVEHDEQEDADFGAYGTSIYYSI-NSRASDHFEINKS-GQIKTLSKLDREYSE-ELVIIIAVMAF-DAGGRVAFC 2455 (4289)
T ss_pred cceeEEEEecCccccccccCCceeeeee-chhccCceeECCC-ccEEeeehhhhccCc-eEEEEEEEEEe-cCCCeEEEE
Confidence 00112333344333 1345678999997 999999999999853 35667777787 688999999
Q ss_pred EEEEEEEeeCCCCCcccCCCcceEEeeCCCCCCcEEEEEEEEeCCCCCCceEEEEEecC-----ceEEccceeEEEeeec
Q psy11097 358 ELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSGTNAEIEYHVSDD-----NFAVDSNGVINNHKTL 432 (817)
Q Consensus 358 ~v~I~V~DvNDn~P~f~~~~y~~~~V~E~~~~Gt~v~~v~A~D~D~g~n~~i~y~i~~~-----~F~I~~~G~i~~~~~l 432 (817)
+++|.++|+|||+|.|....|.. +|.|++..|..|+++.|+|.|.|.|+.++|.+.++ .|.|+++|.|.+++.|
T Consensus 2456 tvti~ltDiNDnpPqF~a~~Y~~-nI~enaskg~~V~~v~A~D~De~snadvty~i~~e~~~~~v~~in~sG~Itv~~sL 2534 (4289)
T KOG1219|consen 2456 TVTIILTDINDNPPQFDAQLYRV-NITENASKGKLVGHVIARDADEGSNADVTYEIVGESDVKHVFEINESGVITVKRSL 2534 (4289)
T ss_pred EEEEEEEecCCCCccccceeEEE-EeecccCCCceEEEEEEecCCCCCcccEEEEecCchhhhheeeecCCceEEeehhh
Confidence 99999999999999999999986 89999999999999999999999999999999875 5889999999999999
Q ss_pred ccCCCCcEEEEEEEEecCCc-------eEEEEEEeCCCCCCccCCCccceeEeeccCCcCeEEEEEEE-------EEEee
Q psy11097 433 DADNNNAYYEFVITAKDKDV-------DVELDVVDRNNKPPLWDNAIYGPIHIRENVTVSTVVTSVKA-------RFGFV 498 (817)
Q Consensus 433 d~e~~~~~~~l~V~a~D~g~-------~v~I~V~d~Nd~~P~f~~~~y~~i~v~E~~~~g~~v~~v~a-------~~~~~ 498 (817)
+++.+ ..|.|.|+|.|+|. +|.++|++..++.|.|+.+.|.+ +|+|+.+.|..+++++| .|+++
T Consensus 2535 ~~~en-~tl~l~vkA~D~g~P~~~s~ttV~v~vl~e~v~lPrFSep~y~f-svpEDv~vG~~Ig~v~a~~a~~~~i~~~v 2612 (4289)
T KOG1219|consen 2535 DGLEN-STLHLFVKAIDDGKPRRRSNTTVIVTVLPEDVNLPRFSEPIYTF-SVPEDVPVGEEIGQVSASDADEHVIYSLV 2612 (4289)
T ss_pred hcccC-cEEEEEEEeccCCCCCcccceEEEEEecCcccCcccccCceEEE-eccccCCCCCeeeEEeecccCCceEEEEE
Confidence 99997 58999999999997 89999999999999999999998 99999999999999999 46665
Q ss_pred cCC----cccccEEEEccccEEEEcccccccccc---cEEEEEEEEeCCccccCCCCCcceeeEEEEEEEeecCCCCCcc
Q psy11097 499 GGS----TSSGQFVIEDITGVIRLNSKSISLDRD---KYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKPVF 571 (817)
Q Consensus 499 ~~~----~~~~~F~Id~~tG~i~~~~~~~~ld~e---~y~l~V~a~D~~~~~~~~~~~~~~~~~~v~I~V~DvNDn~P~f 571 (817)
.++ +....|++|+.||.|.+.+ .||+| .|.+.|.|++.+. .-+.+.|.|.|.|+|||+|+|
T Consensus 2613 ~~gt~Esn~d~~Fsvdr~TG~i~v~k---sLD~E~kk~yqi~v~a~~~~~---------vva~tsv~vqVkDvNDNaPvF 2680 (4289)
T KOG1219|consen 2613 LGGTPESNPDLPFSVDRNTGMIKVNK---SLDHEKKKSYQIKVKATCGQW---------VVAETSVFVQVKDVNDNAPVF 2680 (4289)
T ss_pred eCCCCCCCCCCceEEcCCCceEEecc---ccchhhhceEEEEEEeecCCc---------eEEEEEEEEEeecccCCCccc
Confidence 442 3455699999999999998 67776 7999999998765 356788999999999999999
Q ss_pred ccCCCceeEEecCCCCCceEEEEEEecCCCCCCceEEEEEEecCCCCCccEEEecccceEEecccccccCCCCcEEEEEE
Q psy11097 572 RECSTYYPKVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTNKVFDREGDDGKFVSVTI 651 (817)
Q Consensus 572 ~~~~~~~~~v~En~~~gt~v~~v~A~D~D~g~n~~v~y~l~~~~~~~~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~l~V 651 (817)
.. +.|.+.+.||+|.|+.|++++|.|.|.|.||+|+|+|.+. ..+|.|+++||||++...||+|+++ .|+|.|
T Consensus 2681 e~-d~y~f~i~En~pvGtsV~qf~AsD~Ds~~nGqirysl~~~----v~yF~In~etGwlTt~~eld~ek~d--~y~lkv 2753 (4289)
T KOG1219|consen 2681 EK-DPYLFIIEENSPVGTSVIQFHASDMDSGNNGQIRYSLTSP----VPYFAINPETGWLTTLFELDLEKQD--LYSLKV 2753 (4289)
T ss_pred cC-CceeEEEeccCCCCceEEEEEeeccCCCCCceEEEEEcCC----cceEEEcCCCCeeeehhhhccccCC--ceEEEE
Confidence 98 8999999999999999999999999999999999999864 1289999999999999999999884 599999
Q ss_pred EEEeCCCCCceeEEEEEEEEEecCCCCCccCCCceEEEEeCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCcCCCCCcc
Q psy11097 652 KATDQGEPSLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEY 731 (817)
Q Consensus 652 ~a~D~g~p~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~~~g~~v~~v~A~D~D~g~n~~i~Y~l~~~~~~~~~~~ 731 (817)
+|+|.|.| ++.+.|.|+|.|+||+||+|....|..++.|+.+.|..++.++-.|.|..++.+++|-|..+ ...+.
T Consensus 2754 ~AtDhG~~--ssq~~v~v~vtDvndspprf~~eiy~gtvv~d~p~~~~ia~~si~d~D~s~~nq~t~fI~~g---d~~gq 2828 (4289)
T KOG1219|consen 2754 VATDHGVP--SSQATVLVHVTDVNDSPPRFQREIYEGTVVEDVPGGKIIAGLSIFDADVSEVNQVTGFITLG---DPLGQ 2828 (4289)
T ss_pred EEecCCcc--cccceEEEEEEecCCCcchhhhHhhccceeccCCCCceeeeeEeccccccccceeEEEEeCC---Cccce
Confidence 99999987 67799999999999999999999999999999999999999999999998866888888664 23344
Q ss_pred eEEeCCeeEEEEeeece
Q psy11097 732 FEIQPESGWIVLKKPLD 748 (817)
Q Consensus 732 F~Id~~tG~i~~~~~ld 748 (817)
|.+-.+...+.++|+++
T Consensus 2829 F~~i~ne~~~~~kKt~~ 2845 (4289)
T KOG1219|consen 2829 FWIIENEWIYEFKKTLD 2845 (4289)
T ss_pred EEEEcCcceEEEecchh
Confidence 53333333344555554
No 4
>KOG1219|consensus
Probab=100.00 E-value=4.6e-89 Score=786.89 Aligned_cols=710 Identities=28% Similarity=0.404 Sum_probs=592.7
Q ss_pred cccceeecchHHHhhhhceeeeee--eecccc-----------cc--eeeEeeeeccCCCCcCcEEecCC--eEEEe-ee
Q psy11097 4 KYLMNCIVNESLKQNMTRYRTRYK--IMNSKY-----------LM--NCIVNESLKQNMTSIPWIQITDD--AFIIV-VN 65 (817)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----------~~--~~~v~~~~~~~~~~~~~f~i~~~--~l~~~-~~ 65 (817)
.|+|.+.+-+..++.+.|-+.-|. |.+.|. |+ |....|.+...+. .|.|+++ .|... -+
T Consensus 1862 ~~~vKIs~~~~~ds~lkFtqd~y~aav~en~te~~~~~ii~avg~~in~~l~y~ilnp~~---~FkI~p~tGViqt~gtp 1938 (4289)
T KOG1219|consen 1862 SYVVKISKVHFDDSTLKFTQDVYLAAVKENDTEFWMLFIIEAVGMLINSELVYWILNPQI---GFKIDPITGVIQTSGTP 1938 (4289)
T ss_pred ceEEEEEEEEeecceEEEEhhheeehhhcccccccceeeeehhcccccceeEEEEecCcc---ceEEccccceEecCCcC
Confidence 367777777788888888887776 444432 22 3344555444332 3888886 66544 48
Q ss_pred ccccccceeeee--e---cCCCCCceEEEEEEEEecCCCCCeeecCCCCeEEEEeccCCCCceEEEEEeecCCCCccEEE
Q psy11097 66 WVIEQLLDRDVI--N---HEVVHTDNQRVIIHVKDVNDESPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDSDHNIHY 140 (817)
Q Consensus 66 lD~E~~~~~~~~--~---~~~~~~~~~~v~I~V~DvNDn~P~F~~~~~~~~~~v~E~~~~gt~v~~v~A~D~D~g~~~~y 140 (817)
+|||+...+.+. + ..+..-+.+.|.|.|.|+|||+|+|.+.| |.+.|.|.+.+|++|+++.|.|.|....+.|
T Consensus 1939 ~dReqsdi~~lvVqais~~k~~rva~~lV~V~ied~ndn~pvf~n~p--y~~~I~~~td~gtvv~~v~a~d~dlnG~V~~ 2016 (4289)
T KOG1219|consen 1939 FDREQSDIAKLVVQAISYDKPPRVAFCLVHVDIEDFNDNTPVFSNLP--YYFNISETTDRGTVVGKVVALDADLNGSVFY 2016 (4289)
T ss_pred CCchhhhhhheeeEeeeccCCceeEEEEEEEehhhcccCCceEeCCc--eEEEEeccCCCceEEEEEEEecCCCCccEEE
Confidence 999999887654 2 22335567789999999999999999876 6788999999999999999999998445666
Q ss_pred EEEecCCCCceEEEcceeEEEeccCCCcccccEEEEEEEEEecCCcccccccccCccEEEEEeC-CCCCCeeeccceEEE
Q psy11097 141 FIVRDRTGGRFEVDERSGVVRTRGTDPFQLDQEYVLYVKAEDQNGRKDERKFQSTPEERLSIVG-GKRAPQFYMPSYEAE 219 (817)
Q Consensus 141 ~l~~~~~~~~F~Id~~tG~i~~~~~ld~e~~~~y~l~v~a~D~~g~~~~~~~~~~~~~~~~i~~-~~~~p~f~~~~y~~~ 219 (817)
... .+. .+|+|.| -|.|.++++||+|....|.++|.|.|+|.. ++.. +.+.|+. |+..|.|.++.|.+.
T Consensus 2017 i~~-edy-eyF~I~p-lG~I~l~kpld~e~ln~y~fkviAkd~gs~-----~~~e--viV~vtv~nka~PvF~~~~y~av 2086 (4289)
T KOG1219|consen 2017 IQD-EDY-EYFTISP-LGTISLKKPLDFENLNKYRFKVIAKDGGSV-----HRVE--VIVHVTVENKAAPVFITPDYVAV 2086 (4289)
T ss_pred Eec-Ccc-eeEEecC-CcceEecCccchhhcceeEEEEEEcCCCce-----eeeE--EEEEEEEecCCCcceecCcEEEE
Confidence 554 333 8999999 999999999999988889999999998742 2222 3333443 899999999999998
Q ss_pred eccccc-----------------------------------------------------------CCCCCCcceEEEEEE
Q psy11097 220 IPENQK-----------------------------------------------------------KDTEYPSMTGTATVR 240 (817)
Q Consensus 220 i~e~~~-----------------------------------------------------------~d~~~p~~s~~~~v~ 240 (817)
|.|+.. +|.+.| +++++.|.
T Consensus 2087 i~e~~tv~spvv~vqa~s~l~~kv~YsIldg~~slFtvnf~TG~i~v~~pLd~ea~t~h~l~ieAtd~~~p-~~Aea~Ve 2165 (4289)
T KOG1219|consen 2087 IEELITVSSPVVHVQAASPLGLKVTYSILDGNTSLFTVNFTTGVILVLIPLDREASTLHELLIEATDAGIP-LSAEAKVE 2165 (4289)
T ss_pred eecccccccceeEEeecCCcCCceEEEEecCCcceEEEecccceEEeccccccccccceEEEEEEeccCCC-cceeeEEE
Confidence 887632 133455 89999999
Q ss_pred EEEeeCCCCCCcCcCceeeEEEeCCCCCCcEEEEEEEEeCCCCCceeEEEeecccCCccEEEEEEeCCCCCCCeEEeCce
Q psy11097 241 IYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGAGTFNIGPTS 320 (817)
Q Consensus 241 I~V~DvNDn~P~f~~~~y~~~V~En~~~gt~v~~v~A~D~D~~~~~i~~~~~~~~~~~~i~y~l~~~g~~~~~F~Id~~t 320 (817)
|.|.|+|||||+|.+..|.++++|++++|+.|.++.|+|.|. |+.|.|+|.....-...|+|++.|
T Consensus 2166 IiV~dIndn~PvFeqlsYt~sisE~s~igt~viqilATdsDs--------------n~~isYsl~g~s~~sk~f~In~sT 2231 (4289)
T KOG1219|consen 2166 IIVGDINDNPPVFEQLSYTISISENSKIGTKVIQILATDSDS--------------NREISYSLEGNSEISKPFRINVST 2231 (4289)
T ss_pred EEecccCCCCchhheeeEEEEccCCCccCceEEEEEeccCCC--------------CCceEEEeecCCccccceEEeccc
Confidence 999999999999999999999999999999999999999996 478999998533456789999999
Q ss_pred eEEEeCccCCccccCCCeEEEEEEEEEeCCCCceEEEEEEEEEEeeCCCCCcccCCCcceEEeeCCCCCCcEEEEEEEEe
Q psy11097 321 GIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATD 400 (817)
Q Consensus 321 G~i~~~~~LD~E~~~~~~~y~l~V~a~d~~g~~~~~~~v~I~V~DvNDn~P~f~~~~y~~~~V~E~~~~Gt~v~~v~A~D 400 (817)
|+|++.+.||||+. ..|.+.|+|+|.+-++++.+.|.|+|.|+|||+|.|.+..|.+ .|+|.++.|..|..+.|+|
T Consensus 2232 G~it~~g~ldyE~~---q~f~~fvratdggk~lSseviv~V~VeD~Ndn~Pef~q~~~ea-~vsd~a~~g~fit~v~a~D 2307 (4289)
T KOG1219|consen 2232 GWITVAGKLDYEEN---QEFRFFVRATDGGKPLSSEVIVEVHVEDFNDNPPEFNQRNYEA-FVSDPARSGHFITVVNAHD 2307 (4289)
T ss_pred ceEEEeeecChhhc---ceEEEEEEEccCCCcccccEEEEEEehhcCCCCchhcccccee-ecCCCccceeEEEEEEecc
Confidence 99999999999984 6899999999533357888999999999999999999999998 6999999999999999999
Q ss_pred CCCCCCceEEEE----------------------------Ee--------------------------------------
Q psy11097 401 ADSGTNAEIEYH----------------------------VS-------------------------------------- 414 (817)
Q Consensus 401 ~D~g~n~~i~y~----------------------------i~-------------------------------------- 414 (817)
+|.....++.|. +-
T Consensus 2308 ~Dssd~lk~ey~~~~~l~~s~~G~iTlfNl~k~~l~~s~~lrv~vsD~v~~at~~vl~~~~~~n~~~~lveka~l~Tv~~ 2387 (4289)
T KOG1219|consen 2308 LDSSDHLKLEYNSNHFLILSENGIITLFNLLKSPLQTSYPLRVTVSDGVFRATMEVLFHPHSRNHFSELVEKADLVTVVE 2387 (4289)
T ss_pred CCccchhhhhhcccceeeeccCceEEehhhcccccccccceeeeeccCcceeeeEEEEEecCcccchhhhhccceeEEEE
Confidence 997432222221 00
Q ss_pred ------------------------cCceEEccceeEEEeeecccCCCCc-EEEEEEEEecCCc-----eEEEEEEeCCCC
Q psy11097 415 ------------------------DDNFAVDSNGVINNHKTLDADNNNA-YYEFVITAKDKDV-----DVELDVVDRNNK 464 (817)
Q Consensus 415 ------------------------~~~F~I~~~G~i~~~~~ld~e~~~~-~~~l~V~a~D~g~-----~v~I~V~d~Nd~ 464 (817)
.+.|.|+..|.|.+...||+|.... .+.+.+.|.|.|+ +++|.+.|+|||
T Consensus 2388 ~~~~~~~~f~~~gt~~~~si~s~~sd~~~in~~GqI~t~~kld~e~s~~~vi~i~v~a~Da~gr~af~tvti~ltDiNDn 2467 (4289)
T KOG1219|consen 2388 HDEQEDADFGAYGTSIYYSINSRASDHFEINKSGQIKTLSKLDREYSEELVIIIAVMAFDAGGRVAFCTVTIILTDINDN 2467 (4289)
T ss_pred ecCccccccccCCceeeeeechhccCceeECCCccEEeeehhhhccCceEEEEEEEEEecCCCeEEEEEEEEEEEecCCC
Confidence 0248888899999999999998632 2455666779998 899999999999
Q ss_pred CCccCCCccceeEeeccCCcCeEEEEEEE-----------EEEeecCCcccccEEEEccccEEEEcccccccccccEEEE
Q psy11097 465 PPLWDNAIYGPIHIRENVTVSTVVTSVKA-----------RFGFVGGSTSSGQFVIEDITGVIRLNSKSISLDRDKYELN 533 (817)
Q Consensus 465 ~P~f~~~~y~~i~v~E~~~~g~~v~~v~a-----------~~~~~~~~~~~~~F~Id~~tG~i~~~~~~~~ld~e~y~l~ 533 (817)
||.|....|.+ +|.|++..|..|+.+.| .|.+.++......|.|++ +|.|++...+..+..+.|.|.
T Consensus 2468 pPqF~a~~Y~~-nI~enaskg~~V~~v~A~D~De~snadvty~i~~e~~~~~v~~in~-sG~Itv~~sL~~~en~tl~l~ 2545 (4289)
T KOG1219|consen 2468 PPQFDAQLYRV-NITENASKGKLVGHVIARDADEGSNADVTYEIVGESDVKHVFEINE-SGVITVKRSLDGLENSTLHLF 2545 (4289)
T ss_pred CccccceeEEE-EeecccCCCceEEEEEEecCCCCCcccEEEEecCchhhhheeeecC-CceEEeehhhhcccCcEEEEE
Confidence 99999999998 99999999999999988 466666666778899999 999999997777777799999
Q ss_pred EEEEeCCccccCCCCCcceeeEEEEEEEeecCCCCCccccCCCceeEEecCCCCCceEEEEEEecCCCCCCceEEEEEEe
Q psy11097 534 VTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQ 613 (817)
Q Consensus 534 V~a~D~~~~~~~~~~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~~v~En~~~gt~v~~v~A~D~D~g~n~~v~y~l~~ 613 (817)
|+|.|+|. |++.+.++|.++|++..++.|.|.. +.|.++|+|+.+.|..|++|+|.|.|. .+.|+++-
T Consensus 2546 vkA~D~g~-------P~~~s~ttV~v~vl~e~v~lPrFSe-p~y~fsvpEDv~vG~~Ig~v~a~~a~~----~~i~~~v~ 2613 (4289)
T KOG1219|consen 2546 VKAIDDGK-------PRRRSNTTVIVTVLPEDVNLPRFSE-PIYTFSVPEDVPVGEEIGQVSASDADE----HVIYSLVL 2613 (4289)
T ss_pred EEeccCCC-------CCcccceEEEEEecCcccCcccccC-ceEEEeccccCCCCCeeeEEeecccCC----ceEEEEEe
Confidence 99999987 5678889999999999999999998 899999999999999999999999986 36777776
Q ss_pred cCCCCC---ccEEEecccceEEecccccccCCCCcEEEEEEEEEeCCCCCceeEEEEEEEEEecCCCCCccCCCceEEEE
Q psy11097 614 QPNQKG---AKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEGVCSFTVEITDVNDNPPLFDRQKYVENV 690 (817)
Q Consensus 614 ~~~~~~---~~F~Id~~tG~i~~~~~lD~E~~~~~~~~l~V~a~D~g~p~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~v 690 (817)
+....+ ..|++|+.||.|.+.++||+|.. ++|++.|+|++.+. .-+.++|.|.|.|||||+|+|..+.|.+.+
T Consensus 2614 ~gt~Esn~d~~Fsvdr~TG~i~v~ksLD~E~k--k~yqi~v~a~~~~~--vva~tsv~vqVkDvNDNaPvFe~d~y~f~i 2689 (4289)
T KOG1219|consen 2614 GGTPESNPDLPFSVDRNTGMIKVNKSLDHEKK--KSYQIKVKATCGQW--VVAETSVFVQVKDVNDNAPVFEKDPYLFII 2689 (4289)
T ss_pred CCCCCCCCCCceEEcCCCceEEeccccchhhh--ceEEEEEEeecCCc--eEEEEEEEEEeecccCCCccccCCceeEEE
Confidence 543333 35999999999999999999998 67999999999875 567889999999999999999999999999
Q ss_pred eCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCcCCCCCcceEEeCCeeEEEEeeeceEEEEEeeCCCCCCcccEEEeCc
Q psy11097 691 KQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLDVYYYIVDSPRNEGKDFFEINLQ 770 (817)
Q Consensus 691 ~E~~~~g~~v~~v~A~D~D~g~n~~i~Y~l~~~~~~~~~~~F~Id~~tG~i~~~~~ld~~y~~~~~~~~~~~~~F~Id~~ 770 (817)
.||+|.|+.|++++|.|.|.|.||+++|+|... -.+|.|++.
T Consensus 2690 ~En~pvGtsV~qf~AsD~Ds~~nGqirysl~~~--------------------------------------v~yF~In~e 2731 (4289)
T KOG1219|consen 2690 EENSPVGTSVIQFHASDMDSGNNGQIRYSLTSP--------------------------------------VPYFAINPE 2731 (4289)
T ss_pred eccCCCCceEEEEEeeccCCCCCceEEEEEcCC--------------------------------------cceEEEcCC
Confidence 999999999999999999999999999999863 125666666
Q ss_pred eeEEEEcccCCcccccEEEEEEEEEeCCCCCCC
Q psy11097 771 SGEVFTKVVFDREKQGAYALEVEARDGAPSARP 803 (817)
Q Consensus 771 tG~l~~~~~LDrE~~~~y~l~V~a~D~g~p~~~ 803 (817)
||.|++...||+|++..|.|.|+|+|.|.|...
T Consensus 2732 tGwlTt~~eld~ek~d~y~lkv~AtDhG~~ssq 2764 (4289)
T KOG1219|consen 2732 TGWLTTLFELDLEKQDLYSLKVVATDHGVPSSQ 2764 (4289)
T ss_pred CCeeeehhhhccccCCceEEEEEEecCCccccc
Confidence 666777778899999999999999999999433
No 5
>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here
Probab=99.97 E-value=2.8e-29 Score=253.82 Aligned_cols=197 Identities=35% Similarity=0.551 Sum_probs=180.1
Q ss_pred ceeEEecCCCCCceEEEEEEecCCCCCCceEEEEEEecCCCCCccEEEecccceEEecccccccCCCCcEEEEEEEEEeC
Q psy11097 577 YYPKVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQ 656 (817)
Q Consensus 577 ~~~~v~En~~~gt~v~~v~A~D~D~g~n~~v~y~l~~~~~~~~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~l~V~a~D~ 656 (817)
|.+.|.||.+.|+.++++.|.|+|.+.|+.++|+|.+++.. .+|.|++.+|.|.+.+.||||.. ..|.|.|+|+|.
T Consensus 2 ~~~~i~En~~~g~~v~~~~a~D~D~~~~~~~~y~i~~~~~~--~~F~i~~~tG~l~~~~~lD~e~~--~~~~l~v~a~D~ 77 (199)
T cd00031 2 YSVSVPENAPPGTVVGTVSATDPDSGENGRVTYSILGGNED--GLFSIDPNTGVITTTKPLDREEQ--SEYTLTVVASDG 77 (199)
T ss_pred eEEEEeCCCCCCCEEEEEEEECCCCCCCceEEEEEeCCCCc--ccEEEeCCCCEEEECCCCCCcCC--ceEEEEEEEEEC
Confidence 67889999999999999999999999889999999976432 58999999999999999999998 569999999999
Q ss_pred CCCCceeEEEEEEEEEecCCCCCccCCCceEEEEeCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCcCCCCCcceEEeC
Q psy11097 657 GEPSLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQP 736 (817)
Q Consensus 657 g~p~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~~~g~~v~~v~A~D~D~g~n~~i~Y~l~~~~~~~~~~~F~Id~ 736 (817)
|.|.+++++.|+|.|.|+|||+|.|....|.+.|.|+.++|+.++++.|+|+|.+.|+.++|+|..+.
T Consensus 78 g~~~~~~~~~v~I~V~d~Nd~~P~~~~~~~~~~v~e~~~~~~~i~~~~a~D~D~~~~~~~~y~l~~~~------------ 145 (199)
T cd00031 78 GGPPLSSTATVTVTVLDVNDNPPVFEQSSYEASVPENAPPGTVVGTVTATDADSGENAKLTYSILSGN------------ 145 (199)
T ss_pred CcCcceeEEEEEEEEccCCCCCCcccccceEEEEeCCCCCCCEEEEEEEEcCCCCCCccEEEEEeCCC------------
Confidence 88888899999999999999999999889999999999999999999999999999999999998731
Q ss_pred CeeEEEEeeeceEEEEEeeCCCCCCcccEEEeCceeEEEEcccCCcccccEEEEEEEEEeCCCCCCCCCCCCCCccc
Q psy11097 737 ESGWIVLKKPLDVYYYIVDSPRNEGKDFFEINLQSGEVFTKVVFDREKQGAYALEVEARDGAPSARPNSDGEPNSAC 813 (817)
Q Consensus 737 ~tG~i~~~~~ld~~y~~~~~~~~~~~~~F~Id~~tG~l~~~~~LDrE~~~~y~l~V~a~D~g~p~~~~~~~~~v~v~ 813 (817)
..++|.|++.+|.|++.+.||||....|.|.|.|+|++.|.++++..++|.|+
T Consensus 146 ------------------------~~~~f~i~~~~G~i~~~~~ld~e~~~~~~l~v~a~D~~~~~~~~~~~i~i~v~ 198 (199)
T cd00031 146 ------------------------DKELFSIDPNTGIITLAKPLDREEKSSYELTVVATDGGGPPLSSTATVTVTVL 198 (199)
T ss_pred ------------------------CCCEEEEeCCceEEEeCCccCCccCceEEEEEEEEECCCCCceeEEEEEEEEE
Confidence 13578899899999999999999999999999999988888888888888775
No 6
>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here
Probab=99.95 E-value=1.7e-26 Score=233.40 Aligned_cols=195 Identities=38% Similarity=0.581 Sum_probs=173.1
Q ss_pred eEEEEeccCCCCceEEEEEeecCCCCc--cEEEEEEecCCCCceEEEcceeEEEeccCCCcccccEEEEEEEEEecCCcc
Q psy11097 110 MQAVVQLNAPPNTPVFTLQARDPDSDH--NIHYFIVRDRTGGRFEVDERSGVVRTRGTDPFQLDQEYVLYVKAEDQNGRK 187 (817)
Q Consensus 110 ~~~~v~E~~~~gt~v~~v~A~D~D~g~--~~~y~l~~~~~~~~F~Id~~tG~i~~~~~ld~e~~~~y~l~v~a~D~~g~~ 187 (817)
|...|.|++++|+.|+++.|.|+|.+. .++|+|..+...++|.|++.+|.|++++.||||..+.|.|.|+|+|.++
T Consensus 2 ~~~~i~En~~~g~~v~~~~a~D~D~~~~~~~~y~i~~~~~~~~F~i~~~tG~l~~~~~lD~e~~~~~~l~v~a~D~g~-- 79 (199)
T cd00031 2 YSVSVPENAPPGTVVGTVSATDPDSGENGRVTYSILGGNEDGLFSIDPNTGVITTTKPLDREEQSEYTLTVVASDGGG-- 79 (199)
T ss_pred eEEEEeCCCCCCCEEEEEEEECCCCCCCceEEEEEeCCCCcccEEEeCCCCEEEECCCCCCcCCceEEEEEEEEECCc--
Confidence 567899999999999999999999884 5999999876668999999999999999999999999999999999643
Q ss_pred cccccccCccEEEEEeCCCCCCeeeccceEEEecccccCCCCCCcceEEEEEEEEEeeCCCCCCcCcCceeeEEEeCCCC
Q psy11097 188 DERKFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDTEYPSMTGTATVRIYTKNKNDEEPKFSQQVYTPNVDENAG 267 (817)
Q Consensus 188 ~~~~~~~~~~~~~~i~~~~~~p~f~~~~y~~~i~e~~~~d~~~p~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~V~En~~ 267 (817)
|++++++.|+|.|.|+||++|.|....|.+.|.|+.+
T Consensus 80 -------------------------------------------~~~~~~~~v~I~V~d~Nd~~P~~~~~~~~~~v~e~~~ 116 (199)
T cd00031 80 -------------------------------------------PPLSSTATVTVTVLDVNDNPPVFEQSSYEASVPENAP 116 (199)
T ss_pred -------------------------------------------CcceeEEEEEEEEccCCCCCCcccccceEEEEeCCCC
Confidence 3346889999999999999999999999999999999
Q ss_pred CCcEEEEEEEEeCCCCCceeEEEeecccCCccEEEEEEeCCCCCCCeEEeCceeEEEeCccCCccccCCCeEEEEEEEEE
Q psy11097 268 PNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTAT 347 (817)
Q Consensus 268 ~gt~v~~v~A~D~D~~~~~i~~~~~~~~~~~~i~y~l~~~g~~~~~F~Id~~tG~i~~~~~LD~E~~~~~~~y~l~V~a~ 347 (817)
+|+.++++.|+|+|.+ .++.++|+|.. +.....|.|++.+|.|++.+.||||.. ..|.+.|.|+
T Consensus 117 ~~~~i~~~~a~D~D~~------------~~~~~~y~l~~-~~~~~~f~i~~~~G~i~~~~~ld~e~~---~~~~l~v~a~ 180 (199)
T cd00031 117 PGTVVGTVTATDADSG------------ENAKLTYSILS-GNDKELFSIDPNTGIITLAKPLDREEK---SSYELTVVAT 180 (199)
T ss_pred CCCEEEEEEEEcCCCC------------CCccEEEEEeC-CCCCCEEEEeCCceEEEeCCccCCccC---ceEEEEEEEE
Confidence 9999999999999986 25789999973 333589999999999999999999984 5899999999
Q ss_pred eCCC-CceEEEEEEEEEEe
Q psy11097 348 EDSG-GFSTSVELTIRVTD 365 (817)
Q Consensus 348 d~~g-~~~~~~~v~I~V~D 365 (817)
|.++ +++.++.++|.|.|
T Consensus 181 D~~~~~~~~~~~i~i~v~d 199 (199)
T cd00031 181 DGGGPPLSSTATVTVTVLD 199 (199)
T ss_pred ECCCCCceeEEEEEEEEEC
Confidence 6432 68888999999875
No 7
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....
Probab=99.65 E-value=2.9e-16 Score=137.75 Aligned_cols=92 Identities=28% Similarity=0.416 Sum_probs=85.2
Q ss_pred eEEEEeCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCcCCCCCcceEEeCCeeEEEEeeeceEEEEEeeCCCCCCcccE
Q psy11097 686 YVENVKQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLDVYYYIVDSPRNEGKDFF 765 (817)
Q Consensus 686 y~~~v~E~~~~g~~v~~v~A~D~D~g~n~~i~Y~l~~~~~~~~~~~F~Id~~tG~i~~~~~ld~~y~~~~~~~~~~~~~F 765 (817)
|.+.|+|++++|+.++++.|.|+|.+.|+.+.|+|..+ +..++|
T Consensus 1 Y~~~v~E~~~~g~~v~~v~a~D~D~~~n~~i~y~i~~~------------------------------------~~~~~F 44 (93)
T PF00028_consen 1 YSFSVPENAPPGTVVGQVTATDPDSGPNSQITYSILGG------------------------------------NPDGLF 44 (93)
T ss_dssp EEEEEETTGSTSSEEEEEEEEESSTSTTSSEEEEEEET------------------------------------TSTTSE
T ss_pred CEEEEECCCCCCCEEEEEEEEeCCCCCCceEEEEEecC------------------------------------cccCce
Confidence 78899999999999999999999999999999999874 124689
Q ss_pred EEeCceeEEEEcccCCcccccEEEEEEEEEeC-CCCCCCCCCCCCCccc
Q psy11097 766 EINLQSGEVFTKVVFDREKQGAYALEVEARDG-APSARPNSDGEPNSAC 813 (817)
Q Consensus 766 ~Id~~tG~l~~~~~LDrE~~~~y~l~V~a~D~-g~p~~~~~~~~~v~v~ 813 (817)
.|++.+|.|++.+.||||+++.|.|.|.|+|+ |.|+++++.+++|+||
T Consensus 45 ~I~~~tg~i~~~~~LD~E~~~~y~l~v~a~D~~~~~~~~~~~~V~I~V~ 93 (93)
T PF00028_consen 45 SIDPNTGEISLKKPLDRETQSSYQLTVRATDSGGSPPLSSTATVTINVL 93 (93)
T ss_dssp EEETTTTEEEESSSSCTTTTSEEEEEEEEEETTTSSEEEEEEEEEEEEE
T ss_pred EEeeeeeccccceecCcccCCEEEEEEEEEECCCCCCCEEEEEEEEEEC
Confidence 99999999999999999999999999999999 9999999999999886
No 8
>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....
Probab=99.64 E-value=3.7e-15 Score=130.72 Aligned_cols=92 Identities=38% Similarity=0.582 Sum_probs=85.8
Q ss_pred ceeEEecCCCCCceEEEEEEecCCCCCCceEEEEEEecCCCCCccEEEecccceEEecccccccCCCCcEEEEEEEEEeC
Q psy11097 577 YYPKVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQ 656 (817)
Q Consensus 577 ~~~~v~En~~~gt~v~~v~A~D~D~g~n~~v~y~l~~~~~~~~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~l~V~a~D~ 656 (817)
|.+.|+|++++|+.++++.|.|+|.+.|+.+.|+|..+.. ..+|.|++.+|.|.+.++||||.. ..|.|.|.|+|.
T Consensus 1 Y~~~v~E~~~~g~~v~~v~a~D~D~~~n~~i~y~i~~~~~--~~~F~I~~~tg~i~~~~~LD~E~~--~~y~l~v~a~D~ 76 (93)
T PF00028_consen 1 YSFSVPENAPPGTVVGQVTATDPDSGPNSQITYSILGGNP--DGLFSIDPNTGEISLKKPLDRETQ--SSYQLTVRATDS 76 (93)
T ss_dssp EEEEEETTGSTSSEEEEEEEEESSTSTTSSEEEEEEETTS--TTSEEEETTTTEEEESSSSCTTTT--SEEEEEEEEEET
T ss_pred CEEEEECCCCCCCEEEEEEEEeCCCCCCceEEEEEecCcc--cCceEEeeeeeccccceecCcccC--CEEEEEEEEEEC
Confidence 7889999999999999999999999999999999998743 459999999999999999999998 669999999999
Q ss_pred -CCCCceeEEEEEEEEE
Q psy11097 657 -GEPSLEGVCSFTVEIT 672 (817)
Q Consensus 657 -g~p~~s~~~~v~I~V~ 672 (817)
|.|+++++++|+|+|+
T Consensus 77 ~~~~~~~~~~~V~I~V~ 93 (93)
T PF00028_consen 77 GGSPPLSSTATVTINVL 93 (93)
T ss_dssp TTSSEEEEEEEEEEEEE
T ss_pred CCCCCCEEEEEEEEEEC
Confidence 8999999999999985
No 9
>KOG1834|consensus
Probab=99.58 E-value=5.6e-14 Score=152.06 Aligned_cols=205 Identities=25% Similarity=0.325 Sum_probs=156.1
Q ss_pred EEeecCCCCCccccCCCceeEEecCCCCCceEEEEEEecCCCCC--Cc-eEEEEEEecCCCCCccEE---Eecccc--eE
Q psy11097 560 FITDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGV--NG-QVKYSIVQQPNQKGAKFT---VDEETG--EV 631 (817)
Q Consensus 560 ~V~DvNDn~P~f~~~~~~~~~v~En~~~gt~v~~v~A~D~D~g~--n~-~v~y~l~~~~~~~~~~F~---Id~~tG--~i 631 (817)
..--+|-+.|... ..|.+.|.||...-...--+.|-|.|... .| -.-|.|.+.+ -.|. +|..|| .|
T Consensus 22 ~aarankhkpwie--~ey~gvV~Endntvll~Ppl~aLdkdaplr~ageiC~fklhgq~----vPFdavVvdK~TGegvl 95 (952)
T KOG1834|consen 22 HAARANKHKPWIE--EEYHGVVTENDNTVLLDPPLAALDKDAPLRYAGEICGFKLHGQP----VPFDAVVVDKYTGEGVL 95 (952)
T ss_pred ccccccccCcccc--cceeEEEEeCCceEEeCCCeeeecCCCCcccccccceeEecCCC----CCceEEEEeccCCceEE
Confidence 3456788899887 47999999997532222347888988742 12 3467776532 2454 576675 68
Q ss_pred EecccccccCCCCcEEEEEEEEEeCCCC------CceeEEEEEEEEEecCCCCCccCCCceEEEEeCCCCCCcEEEEEEE
Q psy11097 632 VTNKVFDREGDDGKFVSVTIKATDQGEP------SLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSA 705 (817)
Q Consensus 632 ~~~~~lD~E~~~~~~~~l~V~a~D~g~p------~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~~~g~~v~~v~A 705 (817)
+.+.+||.|.+ +.|+|+|+|.|.|.- ..+-.++|.|.|.|+|+.+|+|..+.|.+.|.|..- -..|++|.|
T Consensus 96 RaK~~lDCelq--keytf~iQAydCg~gpdgtn~kKShkatvhIrVkDvNe~AP~f~ep~Yka~V~EGK~-yd~il~veA 172 (952)
T KOG1834|consen 96 RAKEPLDCELQ--KEYTFTIQAYDCGNGPDGTNTKKSHKATVHIRVKDVNEFAPVFKEPWYKAHVTEGKV-YDSILRVEA 172 (952)
T ss_pred eecCccccccc--ccceEEEEEEecCCCCCccccccccceEEEEEeccccccCchhcccceeeEEeccee-eeeeEEEEe
Confidence 88899999987 569999999998753 345678999999999999999999999999999754 456899999
Q ss_pred EeCCCCC-CceEE-EEEecCcCCCCCcceEEeCCeeEEEEeeeceEEEEEeeCCCCCCcccEEEeCceeEEEEcccCCcc
Q psy11097 706 SDEDADN-NGAIV-YTLSAPYNQMDLEYFEIQPESGWIVLKKPLDVYYYIVDSPRNEGKDFFEINLQSGEVFTKVVFDRE 783 (817)
Q Consensus 706 ~D~D~g~-n~~i~-Y~l~~~~~~~~~~~F~Id~~tG~i~~~~~ld~~y~~~~~~~~~~~~~F~Id~~tG~l~~~~~LDrE 783 (817)
.|.|-++ +++|- |.|..+ .-.|.|| +.|.|+.+.+|.|.
T Consensus 173 iD~DCspq~sqIC~YEI~t~--------------------------------------d~PFaId-n~G~irnTekLny~ 213 (952)
T KOG1834|consen 173 IDKDCSPQYSQICEYEITTP--------------------------------------DVPFAID-NDGNIRNTEKLNYT 213 (952)
T ss_pred ecCCCCCcccceeEEEecCC--------------------------------------CCceEEc-CCCccccccccccc
Confidence 9999865 77765 777652 2358887 57999999999999
Q ss_pred cccEEEEEEEEEeCCCCCCCCCCCCCCcc
Q psy11097 784 KQGAYALEVEARDGAPSARPNSDGEPNSA 812 (817)
Q Consensus 784 ~~~~y~l~V~a~D~g~p~~~~~~~~~v~v 812 (817)
+...|.|+|.|.|.|.-...+-.-++|.|
T Consensus 214 ke~~Y~ltVtAyDCg~kraa~d~lV~v~V 242 (952)
T KOG1834|consen 214 KEHQYKLTVTAYDCGKKRAASDSLVTVHV 242 (952)
T ss_pred cceeEEEEEEEEecccccccCcceEEEEe
Confidence 99999999999998876555544444443
No 10
>smart00112 CA Cadherin repeats. Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.
Probab=99.55 E-value=3e-14 Score=120.80 Aligned_cols=79 Identities=46% Similarity=0.720 Sum_probs=72.3
Q ss_pred ecCCCCCCceEEEEEEecCCCCCccEEEecccceEEecccccccCCCCcEEEEEEEEEeCCCCCceeEEEEEEEEEecCC
Q psy11097 597 TDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEGVCSFTVEITDVND 676 (817)
Q Consensus 597 ~D~D~g~n~~v~y~l~~~~~~~~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~l~V~a~D~g~p~~s~~~~v~I~V~DvND 676 (817)
+|+|.|.|+.++|+|.+++.. .+|.|++.+|.|.+.++||||.. ..|.|.|+|+|.|.|+++++++|+|+|.|+||
T Consensus 1 ~D~D~g~n~~i~Y~i~~~~~~--~~F~i~~~tg~i~~~~~LD~e~~--~~y~l~v~a~D~~~~~~~~~~~v~I~V~D~Nd 76 (79)
T smart00112 1 TDADSGENGKVTYSILSGNED--GLFSIDPETGEITTTKPLDREEQ--PEYTLTVEATDGGGPPLSSTATVTVTVLDVND 76 (79)
T ss_pred CCCCCCcCcEEEEEEecCCCC--CEEEEeCCccEEEeCCccCeeCC--CeEEEEEEEEECCCCCcccEEEEEEEEEECCC
Confidence 489999999999999976432 59999999999999999999987 56999999999999999999999999999999
Q ss_pred CCC
Q psy11097 677 NPP 679 (817)
Q Consensus 677 n~P 679 (817)
|+|
T Consensus 77 ~~P 79 (79)
T smart00112 77 NAP 79 (79)
T ss_pred CCC
Confidence 998
No 11
>KOG1834|consensus
Probab=99.46 E-value=3.2e-12 Score=138.65 Aligned_cols=212 Identities=25% Similarity=0.330 Sum_probs=157.1
Q ss_pred EEEEEecCCCCCeeecCCCCeEEEEeccCCCCceEE--EEEeecCCC-----CccEEEEEEecCCC-CceEEEcce--eE
Q psy11097 90 IIHVKDVNDESPYFINRPLPMQAVVQLNAPPNTPVF--TLQARDPDS-----DHNIHYFIVRDRTG-GRFEVDERS--GV 159 (817)
Q Consensus 90 ~I~V~DvNDn~P~F~~~~~~~~~~v~E~~~~gt~v~--~v~A~D~D~-----g~~~~y~l~~~~~~-~~F~Id~~t--G~ 159 (817)
....--+|=+.|-... .|.+.|.||- +++++ -+.|.|.|. |.---|.|.+.+-. +.--+|..| |.
T Consensus 20 ~~~aarankhkpwie~---ey~gvV~End--ntvll~Ppl~aLdkdaplr~ageiC~fklhgq~vPFdavVvdK~TGegv 94 (952)
T KOG1834|consen 20 HHHAARANKHKPWIEE---EYHGVVTEND--NTVLLDPPLAALDKDAPLRYAGEICGFKLHGQPVPFDAVVVDKYTGEGV 94 (952)
T ss_pred ccccccccccCccccc---ceeEEEEeCC--ceEEeCCCeeeecCCCCcccccccceeEecCCCCCceEEEEeccCCceE
Confidence 3445567777887764 3788999985 44443 478899986 23245777654322 233456665 58
Q ss_pred EEeccCCCcccccEEEEEEEEEecCCcccccccccCccEEEEEeCCCCCCeeeccceEEEecccccCCCCCCcceEEEEE
Q psy11097 160 VRTRGTDPFQLDQEYVLYVKAEDQNGRKDERKFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDTEYPSMTGTATV 239 (817)
Q Consensus 160 i~~~~~ld~e~~~~y~l~v~a~D~~g~~~~~~~~~~~~~~~~i~~~~~~p~f~~~~y~~~i~e~~~~d~~~p~~s~~~~v 239 (817)
|+.+.++|-|++++|+|+|+|.|-|..+.+ ..-..|-.++|
T Consensus 95 lRaK~~lDCelqkeytf~iQAydCg~gpdg---------------------------------------tn~kKShkatv 135 (952)
T KOG1834|consen 95 LRAKEPLDCELQKEYTFTIQAYDCGNGPDG---------------------------------------TNTKKSHKATV 135 (952)
T ss_pred EeecCcccccccccceEEEEEEecCCCCCc---------------------------------------cccccccceEE
Confidence 999999999999999999999996543221 11234667899
Q ss_pred EEEEeeCCCCCCcCcCceeeEEEeCCCCCCcEEEEEEEEeCCCCCceeEEEeecccCCccE-EEEEEeCCCCCCCeEEeC
Q psy11097 240 RIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREI-RYTLKAQGQGAGTFNIGP 318 (817)
Q Consensus 240 ~I~V~DvNDn~P~f~~~~y~~~V~En~~~gt~v~~v~A~D~D~~~~~i~~~~~~~~~~~~i-~y~l~~~g~~~~~F~Id~ 318 (817)
.|+|.|+|+.+|.|..+.|.+.|.|.... ..|++|.|.|.|-++ .+++| .|.|. ...-.|.||.
T Consensus 136 hIrVkDvNe~AP~f~ep~Yka~V~EGK~y-d~il~veAiD~DCsp-----------q~sqIC~YEI~---t~d~PFaIdn 200 (952)
T KOG1834|consen 136 HIRVKDVNEFAPVFKEPWYKAHVTEGKVY-DSILRVEAIDKDCSP-----------QYSQICEYEIT---TPDVPFAIDN 200 (952)
T ss_pred EEEeccccccCchhcccceeeEEecceee-eeeEEEEeecCCCCC-----------cccceeEEEec---CCCCceEEcC
Confidence 99999999999999999999999998644 568899999999553 23444 68886 3567899997
Q ss_pred ceeEEEeCccCCccccCCCeEEEEEEEEEeCCCCceEE-EEEEEEEE
Q psy11097 319 TSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTS-VELTIRVT 364 (817)
Q Consensus 319 ~tG~i~~~~~LD~E~~~~~~~y~l~V~a~d~~g~~~~~-~~v~I~V~ 364 (817)
.|.|+.+.+|.|.. .+.|.|+|+|.|.+-...+. +.|+|.|.
T Consensus 201 -~G~irnTekLny~k---e~~Y~ltVtAyDCg~kraa~d~lV~v~Vk 243 (952)
T KOG1834|consen 201 -DGNIRNTEKLNYTK---EHQYKLTVTAYDCGKKRAASDSLVTVHVK 243 (952)
T ss_pred -CCcccccccccccc---ceeEEEEEEEEecccccccCcceEEEEec
Confidence 59999999999987 37899999999754433333 66777775
No 12
>smart00112 CA Cadherin repeats. Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.
Probab=99.39 E-value=2.5e-12 Score=108.88 Aligned_cols=77 Identities=34% Similarity=0.530 Sum_probs=68.5
Q ss_pred ecCCCCcc--EEEEEEecCCCCceEEEcceeEEEeccCCCcccccEEEEEEEEEecCCcccccccccCccEEEEEeCCCC
Q psy11097 130 RDPDSDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDPFQLDQEYVLYVKAEDQNGRKDERKFQSTPEERLSIVGGKR 207 (817)
Q Consensus 130 ~D~D~g~~--~~y~l~~~~~~~~F~Id~~tG~i~~~~~ld~e~~~~y~l~v~a~D~~g~~~~~~~~~~~~~~~~i~~~~~ 207 (817)
+|+|.|.| +.|+|.++...++|.|++.+|+|+++++||||....|.|.|+|+|.++
T Consensus 1 ~D~D~g~n~~i~Y~i~~~~~~~~F~i~~~tg~i~~~~~LD~e~~~~y~l~v~a~D~~~---------------------- 58 (79)
T smart00112 1 TDADSGENGKVTYSILSGNEDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGG---------------------- 58 (79)
T ss_pred CCCCCCcCcEEEEEEecCCCCCEEEEeCCccEEEeCCccCeeCCCeEEEEEEEEECCC----------------------
Confidence 48898855 899999776658999999999999999999999999999999999754
Q ss_pred CCeeeccceEEEecccccCCCCCCcceEEEEEEEEEeeCCCCCC
Q psy11097 208 APQFYMPSYEAEIPENQKKDTEYPSMTGTATVRIYTKNKNDEEP 251 (817)
Q Consensus 208 ~p~f~~~~y~~~i~e~~~~d~~~p~~s~~~~v~I~V~DvNDn~P 251 (817)
|++++++.|+|.|.|+|||+|
T Consensus 59 -----------------------~~~~~~~~v~I~V~D~Nd~~P 79 (79)
T smart00112 59 -----------------------PPLSSTATVTVTVLDVNDNAP 79 (79)
T ss_pred -----------------------CCcccEEEEEEEEEECCCCCC
Confidence 356889999999999999998
No 13
>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion. They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.
Probab=97.06 E-value=0.0025 Score=54.65 Aligned_cols=79 Identities=19% Similarity=0.368 Sum_probs=45.2
Q ss_pred CCCcccCCCcceEEeeCCCCCCcEEEEEEEEeCCCCCCceEEEEEecCceEEccceeEEEeeecccCCCCcEEEEEEEEe
Q psy11097 369 NAPKFELPDYQAHNIDEDITTGTSILKVKATDADSGTNAEIEYHVSDDNFAVDSNGVINNHKTLDADNNNAYYEFVITAK 448 (817)
Q Consensus 369 n~P~f~~~~y~~~~V~E~~~~Gt~v~~v~A~D~D~g~n~~i~y~i~~~~F~I~~~G~i~~~~~ld~e~~~~~~~l~V~a~ 448 (817)
..|-|....|.. .|+.+...|..|++|.-.|... +..+.|...+..|.|..+|.|++++++..... .-.|.|.|+
T Consensus 2 C~pGF~~~~~~~-~Vp~~l~~g~~lg~V~f~dC~~--~~~~~~~ssDpdF~V~~DGsVy~~r~v~l~~~--~~~F~V~a~ 76 (90)
T PF08758_consen 2 CRPGFSQKKYTF-EVPSNLEAGQPLGKVNFEDCTG--RRRVIFESSDPDFRVLEDGSVYAKRPVQLSSE--QRSFTVHAW 76 (90)
T ss_dssp ---B--S-EEEE-----SS-SS--EEE---B--SS-----EEEE---SEEEEETTTEEEEES--S-SSS---EEEEEEEE
T ss_pred CcCCcccceEEE-EcCchhhCCcEEEEEEeccCCC--CCceEEecCCCCEEEcCCCeEEEeeeEecCCC--ceEEEEEEE
Confidence 358899999986 7999999999999999999853 56799999989999999999999999988654 358999999
Q ss_pred cCCc
Q psy11097 449 DKDV 452 (817)
Q Consensus 449 D~g~ 452 (817)
|..+
T Consensus 77 D~~~ 80 (90)
T PF08758_consen 77 DSQT 80 (90)
T ss_dssp ETTT
T ss_pred CCCC
Confidence 9876
No 14
>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion. This entry represents a cadherin domain that is usually found at the N terminus of cadherin proteins.; PDB: 1WUZ_A 1WYJ_A.
Probab=96.96 E-value=0.00055 Score=57.86 Aligned_cols=66 Identities=20% Similarity=0.313 Sum_probs=40.1
Q ss_pred eEEEeCCCCCCcEEEEEEEEeCCCCCceeEEEeecccCCccEEEEEEeCCCCCCCeEEeCceeEEEeCccCCccccCC
Q psy11097 259 TPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQ 336 (817)
Q Consensus 259 ~~~V~En~~~gt~v~~v~A~D~D~~~~~i~~~~~~~~~~~~i~y~l~~~g~~~~~F~Id~~tG~i~~~~~LD~E~~~~ 336 (817)
..+|+|..++|++|+.+ |.|.-... ... ....|.|.. .....+|.+++.+|.|.+...+|||.++.
T Consensus 4 ~YsV~EE~~~Gt~IGni-a~dL~l~~--------~~l--~~~~~ri~s-~~~~~~~~v~~~tG~L~v~~rIDRE~LC~ 69 (84)
T PF08266_consen 4 RYSVPEEMPPGTVIGNI-AKDLGLDP--------QSL--SSRNFRIVS-EGNSQYFRVNEKTGDLFVSERIDREELCG 69 (84)
T ss_dssp EEEEESS--TT-EEEEC-CCCCT--H--------HHH--CCTTBEEE--SSSS-SEEE-TTTSEEEESS--SCCCC-T
T ss_pred EEEeecCCCCCCEEEEh-HHhhCCCc--------ccc--cccceEEee-cCCcceeEecCCceeEEeCCccCHHHHCC
Confidence 56899999999999999 43442211 011 112466653 44678999999999999999999999764
No 15
>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion. They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.
Probab=96.77 E-value=0.0095 Score=51.08 Aligned_cols=81 Identities=22% Similarity=0.257 Sum_probs=43.5
Q ss_pred CCcCcCceeeEEEeCCCCCCcEEEEEEEEeCCCCCceeEEEeecccCCccEEEEEEeCCCCCCCeEEeCceeEEEeCccC
Q psy11097 250 EPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKEL 329 (817)
Q Consensus 250 ~P~f~~~~y~~~V~En~~~gt~v~~v~A~D~D~~~~~i~~~~~~~~~~~~i~y~l~~~g~~~~~F~Id~~tG~i~~~~~L 329 (817)
.|-|.+..|.+.|+.+...|..+++|.-.|-.+. ..+.|.-. ...|.|.++ |.|++++++
T Consensus 3 ~pGF~~~~~~~~Vp~~l~~g~~lg~V~f~dC~~~--------------~~~~~~ss-----DpdF~V~~D-GsVy~~r~v 62 (90)
T PF08758_consen 3 RPGFSQKKYTFEVPSNLEAGQPLGKVNFEDCTGR--------------RRVIFESS-----DPDFRVLED-GSVYAKRPV 62 (90)
T ss_dssp --B--S-EEEE----SS-SS--EEE---B--SS-----------------EEEE--------SEEEEETT-TEEEEES--
T ss_pred cCCcccceEEEEcCchhhCCcEEEEEEeccCCCC--------------CceEEecC-----CCCEEEcCC-CeEEEeeeE
Confidence 5889999999999999999999999999888643 45677653 238999985 999999999
Q ss_pred CccccCCCeEEEEEEEEEeCCCCce
Q psy11097 330 DFEDLRQPHVYSLIVTATEDSGGFS 354 (817)
Q Consensus 330 D~E~~~~~~~y~l~V~a~d~~g~~~ 354 (817)
.... ..-.+.|.|.|..+...
T Consensus 63 ~l~~----~~~~F~V~a~D~~~~~~ 83 (90)
T PF08758_consen 63 QLSS----EQRSFTVHAWDSQTQEQ 83 (90)
T ss_dssp S-SS----S-EEEEEEEEETTTTEE
T ss_pred ecCC----CceEEEEEEECCCCCeE
Confidence 8764 23478999997555433
No 16
>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]. Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion. This entry represents a cadherin domain that is usually found at the N terminus of cadherin proteins.; PDB: 1WUZ_A 1WYJ_A.
Probab=96.16 E-value=0.0054 Score=51.87 Aligned_cols=59 Identities=22% Similarity=0.268 Sum_probs=38.6
Q ss_pred EEEEeccCCCCceEEEEEeecCCCCc----cEEEEEEecCCCCceEEEcceeEEEeccCCCccc
Q psy11097 111 QAVVQLNAPPNTPVFTLQARDPDSDH----NIHYFIVRDRTGGRFEVDERSGVVRTRGTDPFQL 170 (817)
Q Consensus 111 ~~~v~E~~~~gt~v~~v~A~D~D~g~----~~~y~l~~~~~~~~F~Id~~tG~i~~~~~ld~e~ 170 (817)
..+|+|..++||.|+.| |.|.-... ...+.+.+.....+|.+++.+|.|+++..+|+|.
T Consensus 4 ~YsV~EE~~~Gt~IGni-a~dL~l~~~~l~~~~~ri~s~~~~~~~~v~~~tG~L~v~~rIDRE~ 66 (84)
T PF08266_consen 4 RYSVPEEMPPGTVIGNI-AKDLGLDPQSLSSRNFRIVSEGNSQYFRVNEKTGDLFVSERIDREE 66 (84)
T ss_dssp EEEEESS--TT-EEEEC-CCCCT--HHHHCCTTBEEE-SSSS-SEEE-TTTSEEEESS--SCCC
T ss_pred EEEeecCCCCCCEEEEh-HHhhCCCcccccccceEEeecCCcceeEecCCceeEEeCCccCHHH
Confidence 34599999999999998 55553221 1357777766778999999999999999999885
No 17
>TIGR01965 VCBS_repeat VCBS repeat. This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.
Probab=95.30 E-value=0.18 Score=43.89 Aligned_cols=89 Identities=17% Similarity=0.230 Sum_probs=56.4
Q ss_pred EEEEEecCCCCCCceEEEEEEecCCCCCccEEEecccceEEec--------ccccccCCCCcEEEEEEEEEeCCCCCcee
Q psy11097 592 IKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTN--------KVFDREGDDGKFVSVTIKATDQGEPSLEG 663 (817)
Q Consensus 592 ~~v~A~D~D~g~n~~v~y~l~~~~~~~~~~F~Id~~tG~i~~~--------~~lD~E~~~~~~~~l~V~a~D~g~p~~s~ 663 (817)
+++.++|+|.+. ...+++.... ...+.|.|++ .|...-. +.|..-.. ..-.|+|++.|+ .
T Consensus 2 G~Lt~sD~D~gd--~~~~s~~~~~-g~yGtlti~~-~G~wtYtl~n~~~avq~L~~Ge~--~tdsFtvtv~DG------t 69 (99)
T TIGR01965 2 GQLTISDADAGQ--AHFIAQTDAA-GQYGTFSIDA-DGQWTYQADNSQTAVQALKAGET--LTDTFTVTSADG------T 69 (99)
T ss_pred CceEEeCCCCCC--ceEEeccccc-CCcEEEEECC-CCcEEEEeCCCcHHHHhhcCCCE--EEEEEEEEEeCC------C
Confidence 478999999875 3566664322 2345799986 5643221 12322221 346788889995 2
Q ss_pred EEEEEEEEEecCCCCCccCCCceEEEEeCCC
Q psy11097 664 VCSFTVEITDVNDNPPLFDRQKYVENVKQDA 694 (817)
Q Consensus 664 ~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~ 694 (817)
+.+|+|+|.-.|| +|+.... -...+.|+.
T Consensus 70 t~~vtItI~GtND-apvi~~~-~~g~v~ED~ 98 (99)
T TIGR01965 70 SQTVTITITGAND-AAVIGGA-DTGSVTEDS 98 (99)
T ss_pred eEEEEEEEEccCC-CCEEecc-cceeEecCC
Confidence 6889999999999 8877533 335666653
No 18
>smart00736 CADG Dystroglycan-type cadherin-like domains. Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.
Probab=95.08 E-value=0.35 Score=42.34 Aligned_cols=73 Identities=22% Similarity=0.314 Sum_probs=53.4
Q ss_pred EEecCCCCCCceEEEEEEecCC-CCCccEEEecccceEEecccccccCCCCcEEEEEEEEEeCCCCCceeEEEEEEEEEe
Q psy11097 595 HATDEDKGVNGQVKYSIVQQPN-QKGAKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEGVCSFTVEITD 673 (817)
Q Consensus 595 ~A~D~D~g~n~~v~y~l~~~~~-~~~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~l~V~a~D~g~p~~s~~~~v~I~V~D 673 (817)
...|+| +..++|++....+ ....|.+.|+.++.+.-. +...+. ..|.+.|+|+|+.. .+....++|.|.+
T Consensus 23 tF~d~d---~~~lty~~~~~~~~~lP~Wl~fd~~~~~~~Gt-P~~~~~---g~~~i~v~a~D~~g--~~~~~~f~i~V~~ 93 (97)
T smart00736 23 TFTDAD---GDTLTYSATLSDGSALPSWLSFDSDTGTLSGT-PTNSDV---GSLSLKVTATDSSG--ASASDTFTITVVN 93 (97)
T ss_pred ceECCC---CCeEEEEEEeCCCCCCCCeEEEeCCCCEEEEE-CCCCCC---cEEEEEEEEEECCC--CEEEEEEEEEEeC
Confidence 456777 3478999874321 234699999999988773 444333 34999999999864 6677889999999
Q ss_pred cCC
Q psy11097 674 VND 676 (817)
Q Consensus 674 vND 676 (817)
.||
T Consensus 94 ~~~ 96 (97)
T smart00736 94 TND 96 (97)
T ss_pred CCC
Confidence 987
No 19
>smart00736 CADG Dystroglycan-type cadherin-like domains. Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.
Probab=94.82 E-value=0.33 Score=42.44 Aligned_cols=64 Identities=27% Similarity=0.295 Sum_probs=47.9
Q ss_pred cEEEEEEeCC--CCCCCeEEeCceeEEEeCccCCccccCCCeEEEEEEEEEeCCCCceEEEEEEEEEEeeCC
Q psy11097 299 EIRYTLKAQG--QGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVELTIRVTDVND 368 (817)
Q Consensus 299 ~i~y~l~~~g--~~~~~F~Id~~tG~i~~~~~LD~E~~~~~~~y~l~V~a~d~~g~~~~~~~v~I~V~DvND 368 (817)
.++|++...+ .-..|.+.++.++.+.-. +...+. ..|.++|.|+| +.+.++...++|.|.+.||
T Consensus 31 ~lty~~~~~~~~~lP~Wl~fd~~~~~~~Gt-P~~~~~----g~~~i~v~a~D-~~g~~~~~~f~i~V~~~~~ 96 (97)
T smart00736 31 TLTYSATLSDGSALPSWLSFDSDTGTLSGT-PTNSDV----GSLSLKVTATD-SSGASASDTFTITVVNTND 96 (97)
T ss_pred eEEEEEEeCCCCCCCCeEEEeCCCCEEEEE-CCCCCC----cEEEEEEEEEE-CCCCEEEEEEEEEEeCCCC
Confidence 5788886432 235689999998888873 444333 46999999995 4457888999999999986
No 20
>TIGR01965 VCBS_repeat VCBS repeat. This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.
Probab=94.40 E-value=0.3 Score=42.57 Aligned_cols=92 Identities=24% Similarity=0.270 Sum_probs=54.3
Q ss_pred EEEEEEeCCCCCceeEEEeecccCCccEEEEEEeCCCCCCCeEEeCceeEEEeCc-----cCCccccCCCeEEEEEEEEE
Q psy11097 273 TTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAK-----ELDFEDLRQPHVYSLIVTAT 347 (817)
Q Consensus 273 ~~v~A~D~D~~~~~i~~~~~~~~~~~~i~y~l~~~g~~~~~F~Id~~tG~i~~~~-----~LD~E~~~~~~~y~l~V~a~ 347 (817)
+++.++|+|.+.. ..+++......-+.|.|++ +|..+..- ..++-...+...-+|++++.
T Consensus 2 G~Lt~sD~D~gd~--------------~~~s~~~~~g~yGtlti~~-~G~wtYtl~n~~~avq~L~~Ge~~tdsFtvtv~ 66 (99)
T TIGR01965 2 GQLTISDADAGQA--------------HFIAQTDAAGQYGTFSIDA-DGQWTYQADNSQTAVQALKAGETLTDTFTVTSA 66 (99)
T ss_pred CceEEeCCCCCCc--------------eEEecccccCCcEEEEECC-CCcEEEEeCCCcHHHHhhcCCCEEEEEEEEEEe
Confidence 4689999997742 3444431112345688887 57655331 11111111123456777777
Q ss_pred eCCCCceEEEEEEEEEEeeCCCCCcccCCCcceEEeeCCC
Q psy11097 348 EDSGGFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDI 387 (817)
Q Consensus 348 d~~g~~~~~~~v~I~V~DvNDn~P~f~~~~y~~~~V~E~~ 387 (817)
| | .++.|+|+|.-.|| +|+.....- . .|.|+.
T Consensus 67 D--G---tt~~vtItI~GtND-apvi~~~~~-g-~v~ED~ 98 (99)
T TIGR01965 67 D--G---TSQTVTITITGAND-AAVIGGADT-G-SVTEDS 98 (99)
T ss_pred C--C---CeEEEEEEEEccCC-CCEEecccc-e-eEecCC
Confidence 5 3 38889999999998 777754433 2 566753
No 21
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=91.43 E-value=14 Score=35.52 Aligned_cols=132 Identities=22% Similarity=0.321 Sum_probs=69.3
Q ss_pred ccccccEEEEE-EEEeCCccccCCCCCcceeeEEEEEEEeecCCCCCccccCCCceeEEecCCCC-CceEEEEEEecCCC
Q psy11097 524 SLDRDKYELNV-TAVDDGACCANGDQSVHTATAVVVVFITDVNDNKPVFRECSTYYPKVEEGAPN-GSPVIKVHATDEDK 601 (817)
Q Consensus 524 ~ld~e~y~l~V-~a~D~~~~~~~~~~~~~~~~~~v~I~V~DvNDn~P~f~~~~~~~~~v~En~~~-gt~v~~v~A~D~D~ 601 (817)
.+.-..|.+.+ +|.|..+ ...+..+..++. +.-.+|.+.- .....+..+... |..=..+.++|.-.
T Consensus 11 ~l~dG~Y~l~~~~a~D~ag---------N~~~~~~~~~~~-iD~T~Ptisi--~~~~~~~~g~~v~~~~~i~i~~tD~~~ 78 (158)
T PF13750_consen 11 TLPDGSYTLTVVTATDAAG---------NTSTSTVSETFT-IDNTPPTISI--SDGASVANGSTVYGLVNISINVTDNSD 78 (158)
T ss_pred cCCCccEEEEEEEEEecCC---------CEEEEEEeeEEE-EcCCCCEEEE--ecCCccCCCccccceeeeEEEEEeCCC
Confidence 45556899999 7999876 233333432332 1224787753 111122333222 22335678888776
Q ss_pred CCCceEEEEEEecCCCCCccEEEecc-cceEEec--ccc-cccCCCCcEEEEEEEEEeCCCCCceeEEEEEEEEE
Q psy11097 602 GVNGQVKYSIVQQPNQKGAKFTVDEE-TGEVVTN--KVF-DREGDDGKFVSVTIKATDQGEPSLEGVCSFTVEIT 672 (817)
Q Consensus 602 g~n~~v~y~l~~~~~~~~~~F~Id~~-tG~i~~~--~~l-D~E~~~~~~~~l~V~a~D~g~p~~s~~~~v~I~V~ 672 (817)
+. .--+.+|.+++....-....... .|..... +.+ ..|.. ..|+|+|.|+|..+ ..++.++.+...
T Consensus 79 ~~-~i~sv~l~Gg~~~d~v~ls~~~~~~~~~~~~yp~~fpsle~~--~~YtLtV~a~D~aG--N~~~~si~F~y~ 148 (158)
T PF13750_consen 79 DS-KITSVSLTGGPASDSVSLSWTNKGNGVYTLEYPRIFPSLEAD--DSYTLTVSATDKAG--NQSTKSISFSYM 148 (158)
T ss_pred Cc-eEEEEEEECCcccceEEEeeEeccCceEEeecccccCCcCCC--CeEEEEEEEEecCC--CEEEEEEEEEEe
Confidence 54 44567776655333222333222 2322221 111 11333 56999999999653 456666766665
No 22
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=90.10 E-value=22 Score=43.58 Aligned_cols=192 Identities=19% Similarity=0.198 Sum_probs=94.7
Q ss_pred cCCCCCccccCCCceeEEecCCCCCceEEEEEEecCCCCCCceEEEEEEecCCCCCccEEEecccceEEec---------
Q psy11097 564 VNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTN--------- 634 (817)
Q Consensus 564 vNDn~P~f~~~~~~~~~v~En~~~gt~v~~v~A~D~D~g~n~~v~y~l~~~~~~~~~~F~Id~~tG~i~~~--------- 634 (817)
.||..+.|.- ..-...|.|+. |+.-.+|.-...|.+..-.|.|+..++....+..|. +..|.|.-.
T Consensus 395 ~dd~~s~i~F-e~~~Y~V~En~--GtV~VtV~R~GGdl~~tVsVdY~T~DGTA~AG~DY~--~~sGTLtF~PGEt~KtIt 469 (928)
T TIGR00845 395 ENDPVSKIFF-EPGHYTCLENC--GTVALTVVRRGGDLTNTVYVDYRTEDGTANAGSDYE--FTEGTLVFKPGETQKEFR 469 (928)
T ss_pred ccCCcceEEe-cCCeEEEeecC--cEEEEEEEEccCCCCceEEEEEEccCCccCCCCCcc--ccCceEEECCCceEEEEE
Confidence 4554554443 33455699986 676666665554554446789998876544444454 244554322
Q ss_pred -ccccccCC-CCcEEEEEEEEEeCC-------------CCCceeEEEEEEEEEecCCCCCccCCCceEEEEeCCCCCCcE
Q psy11097 635 -KVFDREGD-DGKFVSVTIKATDQG-------------EPSLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTN 699 (817)
Q Consensus 635 -~~lD~E~~-~~~~~~l~V~a~D~g-------------~p~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~~~g~~ 699 (817)
.-+|-... ....+.+.+.--..+ .+.+....+.+|+|.| ||++|+|.-..-...|.|+. |..
T Consensus 470 V~IIDDdi~E~DE~F~V~LSNp~~g~~~G~~~~~~~~~~A~Lg~ps~ATVTIlD-DD~aGIfsFe~~~~sV~Es~--G~v 546 (928)
T TIGR00845 470 IGIIDDDIFEEDEHFYVRLSNLRVGSEDGILEANHVSAVAQLASPNTATVTILD-DDHAGIFTFEEDVFHVSESI--GIM 546 (928)
T ss_pred EEEccCCCCCCCceEEEEEeCCCCCCcccccccccccccceecCCceEEEEEec-CcccCcccccCceEEEEcCC--CEE
Confidence 11222111 112344433221111 1112233456677777 78899876544445888874 555
Q ss_pred EEEEEEEeCCCCCCce--EEEEEecCcCCCCCcceEEeCCeeEEEEeeece---EEEEEeeCCCCCCcccEEEe
Q psy11097 700 ILRVSASDEDADNNGA--IVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLD---VYYYIVDSPRNEGKDFFEIN 768 (817)
Q Consensus 700 v~~v~A~D~D~g~n~~--i~Y~l~~~~~~~~~~~F~Id~~tG~i~~~~~ld---~~y~~~~~~~~~~~~~F~Id 768 (817)
-.+|.-+ .|..|. +.|.-..++......-|. +.+|.|.-...-. ++..|+++.--+....|.|.
T Consensus 547 tvtV~Rt---sGa~G~VtV~Y~T~dGTA~aGg~DY~--~~sGtLtF~~GEtsKtItV~IiDD~~~E~dEtF~V~ 615 (928)
T TIGR00845 547 EVKVLRT---SGARGTVIVPYRTVEGTARGGGKDFE--DTCGELEFENDETEKTIRVKIVDDEEYEKNDTFFIE 615 (928)
T ss_pred EEEEEEc---CCCCeeEEEEEEeecCccCCCCCCcc--cccceEEEcCCcEEEEEEEEEcCCCcccCceeEEEE
Confidence 4443321 233333 567766653322212332 4566665433221 34445554444444555553
No 23
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=87.56 E-value=81 Score=38.89 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=44.0
Q ss_pred cCCCCCeeecCCCCeEEEEeccCCCCceEEEEEeecCCCCcc--EEEEEEecCCC--CceEEEcceeEEEeccCCCcccc
Q psy11097 96 VNDESPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDSDHN--IHYFIVRDRTG--GRFEVDERSGVVRTRGTDPFQLD 171 (817)
Q Consensus 96 vNDn~P~F~~~~~~~~~~v~E~~~~gt~v~~v~A~D~D~g~~--~~y~l~~~~~~--~~F~Id~~tG~i~~~~~ld~e~~ 171 (817)
.||.++.|.-.+..|+ |.|++ |+.-.+|.-...|.+.. +.|+...+.+. .-|. +..|.|..... |.
T Consensus 395 ~dd~~s~i~Fe~~~Y~--V~En~--GtV~VtV~R~GGdl~~tVsVdY~T~DGTA~AG~DY~--~~sGTLtF~PG---Et- 464 (928)
T TIGR00845 395 ENDPVSKIFFEPGHYT--CLENC--GTVALTVVRRGGDLTNTVYVDYRTEDGTANAGSDYE--FTEGTLVFKPG---ET- 464 (928)
T ss_pred ccCCcceEEecCCeEE--EeecC--cEEEEEEEEccCCCCceEEEEEEccCCccCCCCCcc--ccCceEEECCC---ce-
Confidence 5677777766555555 99984 88777776554454433 66777654332 2343 35676666532 22
Q ss_pred cEEEEEEEEEec
Q psy11097 172 QEYVLYVKAEDQ 183 (817)
Q Consensus 172 ~~y~l~v~a~D~ 183 (817)
+-.++|...|.
T Consensus 465 -~KtItV~IIDD 475 (928)
T TIGR00845 465 -QKEFRIGIIDD 475 (928)
T ss_pred -EEEEEEEEccC
Confidence 23455555553
No 24
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=87.42 E-value=28 Score=33.42 Aligned_cols=109 Identities=19% Similarity=0.361 Sum_probs=59.1
Q ss_pred eEEEEEE-EEEeCCCCceEEEEEEEEEEeeCCCCCcccCCCcceEEeeCCCCC-CcEEEEEEEEeCCCCCCceEEEEEec
Q psy11097 338 HVYSLIV-TATEDSGGFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITT-GTSILKVKATDADSGTNAEIEYHVSD 415 (817)
Q Consensus 338 ~~y~l~V-~a~d~~g~~~~~~~v~I~V~DvNDn~P~f~~~~y~~~~V~E~~~~-Gt~v~~v~A~D~D~g~n~~i~y~i~~ 415 (817)
..|.+.+ +|.|..|. ..+..+..++. +...+|.+.. .... .+..+..+ |..=..+.++|.-.+. ..-..+|.+
T Consensus 15 G~Y~l~~~~a~D~agN-~~~~~~~~~~~-iD~T~Ptisi-~~~~-~~~~g~~v~~~~~i~i~~tD~~~~~-~i~sv~l~G 89 (158)
T PF13750_consen 15 GSYTLTVVTATDAAGN-TSTSTVSETFT-IDNTPPTISI-SDGA-SVANGSTVYGLVNISINVTDNSDDS-KITSVSLTG 89 (158)
T ss_pred ccEEEEEEEEEecCCC-EEEEEEeeEEE-EcCCCCEEEE-ecCC-ccCCCccccceeeeEEEEEeCCCCc-eEEEEEEEC
Confidence 6899999 79976554 33333433333 2345888865 1111 23333322 3334668888876543 445566665
Q ss_pred Cc------eEEcc--ceeEEEe--eec-ccCCCCcEEEEEEEEecCCc
Q psy11097 416 DN------FAVDS--NGVINNH--KTL-DADNNNAYYEFVITAKDKDV 452 (817)
Q Consensus 416 ~~------F~I~~--~G~i~~~--~~l-d~e~~~~~~~l~V~a~D~g~ 452 (817)
+. ..... +|...+. +.+ ..|. ...|+|+|.|.|..+
T Consensus 90 g~~~d~v~ls~~~~~~~~~~~~yp~~fpsle~-~~~YtLtV~a~D~aG 136 (158)
T PF13750_consen 90 GPASDSVSLSWTNKGNGVYTLEYPRIFPSLEA-DDSYTLTVSATDKAG 136 (158)
T ss_pred CcccceEEEeeEeccCceEEeecccccCCcCC-CCeEEEEEEEEecCC
Confidence 32 12222 3444332 111 1233 368999999999877
No 25
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.
Probab=82.92 E-value=3.9 Score=30.67 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=28.1
Q ss_pred CCCceEEEcceeEEEeccCCCcccccEEEEEEEEEecCC
Q psy11097 147 TGGRFEVDERSGVVRTRGTDPFQLDQEYVLYVKAEDQNG 185 (817)
Q Consensus 147 ~~~~F~Id~~tG~i~~~~~ld~e~~~~y~l~v~a~D~~g 185 (817)
-.....||+.+|.|+-...-.- ....|.++|+|+|..|
T Consensus 12 LP~gLs~d~~tG~isGtp~~~~-~~G~y~~~vtatd~~G 49 (49)
T PF05345_consen 12 LPSGLSLDPSTGTISGTPTSSV-QPGTYTFTVTATDGSG 49 (49)
T ss_pred CCCcEEEeCCCCEEEeecCCCc-cccEEEEEEEEEcCCC
Confidence 3467899999999988753211 2257999999999764
No 26
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.
Probab=80.91 E-value=7.2 Score=29.26 Aligned_cols=35 Identities=20% Similarity=0.382 Sum_probs=26.1
Q ss_pred cccEEEeCceeEEEEcccCCcc-cccEEEEEEEEEeCC
Q psy11097 762 KDFFEINLQSGEVFTKVVFDRE-KQGAYALEVEARDGA 798 (817)
Q Consensus 762 ~~~F~Id~~tG~l~~~~~LDrE-~~~~y~l~V~a~D~g 798 (817)
..+..||+.+|.|.-. .+.. +...|.++|.|+|+.
T Consensus 13 P~gLs~d~~tG~isGt--p~~~~~~G~y~~~vtatd~~ 48 (49)
T PF05345_consen 13 PSGLSLDPSTGTISGT--PTSSVQPGTYTFTVTATDGS 48 (49)
T ss_pred CCcEEEeCCCCEEEee--cCCCccccEEEEEEEEEcCC
Confidence 5678888888888755 2333 347999999999964
No 27
>KOG3597|consensus
Probab=70.99 E-value=70 Score=36.00 Aligned_cols=157 Identities=15% Similarity=0.179 Sum_probs=86.3
Q ss_pred EEEEEEEEEeeCCCCCCcCcCceeeEEEeCCCCCCcEEEEEEEEeCCCCCceeEEEeecccCCccEEEEEEe--------
Q psy11097 235 GTATVRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKA-------- 306 (817)
Q Consensus 235 ~~~~v~I~V~DvNDn~P~f~~~~y~~~V~En~~~gt~v~~v~A~D~D~~~~~i~~~~~~~~~~~~i~y~l~~-------- 306 (817)
-+..+.|.|.-+||++..+....+..-+.|++..-.-.-.+.+.|+|... ..+.|++..
T Consensus 24 ~~~~~~i~v~pvndpp~~~~~~~~~l~~~~~~~k~l~~~~l~~~d~d~~~-------------~~l~f~v~~t~~~~~~~ 90 (442)
T KOG3597|consen 24 QTDVLRIHVNPVNDPPSLIFPSGSLLVILEGGQKVLDPELLTAADPDSAP-------------LPLEFQVLGTSSVPLPV 90 (442)
T ss_pred EEeeecccccccCCCcceeecccceEEeecCCceeccceEeeccCCCCCc-------------cceEEEEccCCCCCCcc
Confidence 45678899999999998887777778888887655555678889999764 234555542
Q ss_pred -----CCCCCCCeEEe-CceeEEEeCccCCccccCCCeEEEEEEEEEeCCCCceEEEEEEEEEEeeCCCCCcccCCCcce
Q psy11097 307 -----QGQGAGTFNIG-PTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVELTIRVTDVNDNAPKFELPDYQA 380 (817)
Q Consensus 307 -----~g~~~~~F~Id-~~tG~i~~~~~LD~E~~~~~~~y~l~V~a~d~~g~~~~~~~v~I~V~DvNDn~P~f~~~~y~~ 380 (817)
.|.....|+-. -..|.+... +... .-..+.++.+++| |...+. .+...+. ...|.+....-..
T Consensus 91 ~~~~~~g~~~~~Fs~~~v~~g~~~yv----h~g~-el~~~~~~~~~SD--g~~~S~-~~i~~~~---~~~~~~~~~~~~g 159 (442)
T KOG3597|consen 91 LKFDVPGAPATEFSYEEVEDGSLSYV----HSGT-ELRESELQLRVSD--GLLVSE-RAILKVE---ATGPAPHLARNTG 159 (442)
T ss_pred ceeeccCCcccceEehHhhcCceeEE----ecCc-ccccceEEEEeec--ceEeee-eEEeccc---CCCcceeeecccc
Confidence 22233334332 123333322 2221 0134667777775 443333 1111111 2344443322222
Q ss_pred EEeeCCCCCCcEEEEEEEEeCCCCCCceEEEEEec
Q psy11097 381 HNIDEDITTGTSILKVKATDADSGTNAEIEYHVSD 415 (817)
Q Consensus 381 ~~V~E~~~~Gt~v~~v~A~D~D~g~n~~i~y~i~~ 415 (817)
..|.-....--.-..+.+.|.|++..-.+.|.|..
T Consensus 160 L~v~~gS~~~IT~~~L~ved~d~~~d~~v~~~i~~ 194 (442)
T KOG3597|consen 160 LKVLQGSTAPITPSNLSVEDNDSSPDDEVRYDITP 194 (442)
T ss_pred eEEccCccccccHhHceeecCCCCCCcEEEEEecC
Confidence 23333222111113478889887667788998875
No 28
>PF03160 Calx-beta: Calx-beta domain; InterPro: IPR003644 The calx-beta motif is present as a tandem repeat in the cytoplasmic domains of Calx Na-Ca exchangers, which are used to expel calcium from cells. This motif overlaps domains used for calcium binding and regulation. The calx-beta motif is also present in the cytoplasmic tail of mammalian integrin-beta4, which mediates the bi-directional transfer of signals across the plasma membrane, as well as in some cyanobacterial proteins. This motif contains a series of beta-strands and turns that form a self-contained beta-sheet [, ].; GO: 0007154 cell communication, 0016021 integral to membrane; PDB: 3H6A_B 3FSO_A 3FQ4_B 2DPK_A 2QVM_A 3GIN_B 2QVK_A 2FWU_A 2FWS_A 3E9U_A ....
Probab=62.82 E-value=85 Score=27.11 Aligned_cols=52 Identities=25% Similarity=0.293 Sum_probs=29.5
Q ss_pred EEEEEecCCCCCccCCCceEEEEeCCCCCCcEEEEEEEEeCCCCCCceEEEEEecC
Q psy11097 668 TVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDADNNGAIVYTLSAP 723 (817)
Q Consensus 668 ~I~V~DvNDn~P~f~~~~y~~~v~E~~~~g~~v~~v~A~D~D~g~n~~i~Y~l~~~ 723 (817)
+|+|.| ||.+ .+.-..-...+.|+. |..-..|.-...+....-.+.|....+
T Consensus 2 tvtI~d-~d~~-~v~f~~~~~~v~E~~--~~~~v~V~~~~~~~~~~v~v~~~~~~g 53 (100)
T PF03160_consen 2 TVTILD-DDDP-TVSFSSPSYTVSEGD--GTVTVTVTRSGGSLDGPVTVNYSTVDG 53 (100)
T ss_dssp EEEEE--TTSE-EEEESSSEEEEETTS--SEEEEEEEEESS-TSSEEEEEEEEEES
T ss_pred EEEEEC-CCCC-EEEEeCCEEEEEeCC--CEEEEEEEEcccCCCcceEEEEEEeCC
Confidence 567788 7744 765444445788875 445555655544433344567776654
No 29
>TIGR03660 T1SS_rpt_143 T1SS-143 repeat domain. This model represents a domain of about 143 amino acids that may occur singly or in up to 23 tandem repeats in very large proteins in the genus Vibrio, and in related species such as Legionella pneumophila, Photobacterium profundum, Rhodopseudomonas palustris, Shewanella pealeana, and Aeromonas hydrophila. Proteins with these domains represent a subset of a broader set of proteins with a particular signal for type 1 secretion, consisting of several glycine-rich repeats modeled by pfam00353, followed by a C-terminal domain modeled by TIGR03661. Proteins with this domain tend to share several properties with the RtxA (Repeats in Toxin) protein of Vibrio cholerae, including a large size often containing tandemly repeated domains and a C-terminal signal for type 1 secretion.
Probab=62.18 E-value=1e+02 Score=28.72 Aligned_cols=60 Identities=27% Similarity=0.314 Sum_probs=37.7
Q ss_pred EEEeCccCCccccCCCeEEEEEEEEEeCCCCceEEEEEEEEEEeeCCCCCcccCCCcceEEeeCCC
Q psy11097 322 IVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDI 387 (817)
Q Consensus 322 ~i~~~~~LD~E~~~~~~~y~l~V~a~d~~g~~~~~~~v~I~V~DvNDn~P~f~~~~y~~~~V~E~~ 387 (817)
.+++.++||+..-...-...|.|.|+|..|..+ ...+.|+|.| | .|......- ..|.|+.
T Consensus 69 tftL~~~lDH~~g~d~l~l~~~v~a~D~DGD~s-~~~l~VtI~D--D-~P~~~~~~~--~~V~E~~ 128 (137)
T TIGR03660 69 EFTLEGPLDHAAGSDELTLNFPIIATDFDGDTS-SITLPVTIVD--D-VPTITDVDA--LTVDEDD 128 (137)
T ss_pred EEEEcccccCCCCCceEEEeeeEEEEeCCCCcc-ccEEEEEEEC--C-CCeeccccc--eEEeccc
Confidence 455667888743111235678899997555444 3588888887 5 587755442 3688843
No 30
>PF03160 Calx-beta: Calx-beta domain; InterPro: IPR003644 The calx-beta motif is present as a tandem repeat in the cytoplasmic domains of Calx Na-Ca exchangers, which are used to expel calcium from cells. This motif overlaps domains used for calcium binding and regulation. The calx-beta motif is also present in the cytoplasmic tail of mammalian integrin-beta4, which mediates the bi-directional transfer of signals across the plasma membrane, as well as in some cyanobacterial proteins. This motif contains a series of beta-strands and turns that form a self-contained beta-sheet [, ].; GO: 0007154 cell communication, 0016021 integral to membrane; PDB: 3H6A_B 3FSO_A 3FQ4_B 2DPK_A 2QVM_A 3GIN_B 2QVK_A 2FWU_A 2FWS_A 3E9U_A ....
Probab=61.46 E-value=1.1e+02 Score=26.47 Aligned_cols=52 Identities=29% Similarity=0.319 Sum_probs=28.4
Q ss_pred EEEEeecCCCCCccccCCCceeEEecCCCCCceEEEEEEecCCCCCCceEEEEEEec
Q psy11097 558 VVFITDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQ 614 (817)
Q Consensus 558 ~I~V~DvNDn~P~f~~~~~~~~~v~En~~~gt~v~~v~A~D~D~g~n~~v~y~l~~~ 614 (817)
+|+|.| || .|.+.- ..-...+.|+. |..-..|.-...+....-.+.|...++
T Consensus 2 tvtI~d-~d-~~~v~f-~~~~~~v~E~~--~~~~v~V~~~~~~~~~~v~v~~~~~~g 53 (100)
T PF03160_consen 2 TVTILD-DD-DPTVSF-SSPSYTVSEGD--GTVTVTVTRSGGSLDGPVTVNYSTVDG 53 (100)
T ss_dssp EEEEE--TT-SEEEEE-SSSEEEEETTS--SEEEEEEEEESS-TSSEEEEEEEEEES
T ss_pred EEEEEC-CC-CCEEEE-eCCEEEEEeCC--CEEEEEEEEcccCCCcceEEEEEEeCC
Confidence 467788 77 447665 44456788886 344455555544432334566665544
No 31
>KOG3597|consensus
Probab=60.09 E-value=1.6e+02 Score=33.21 Aligned_cols=159 Identities=16% Similarity=0.207 Sum_probs=81.9
Q ss_pred eEEEEEEEeecCCCCCccccCCCceeEEecCCCCCceEEEEEEecCCCCCCceEEEEEEecCCCC--CccEEEecccceE
Q psy11097 554 TAVVVVFITDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQK--GAKFTVDEETGEV 631 (817)
Q Consensus 554 ~~~v~I~V~DvNDn~P~f~~~~~~~~~v~En~~~gt~v~~v~A~D~D~g~n~~v~y~l~~~~~~~--~~~F~Id~~tG~i 631 (817)
+....|.|..+||.+..+.. ..+...+.|+...-...-.+.+.|+|.+. ..+.|++....+.. ...|..-...+.-
T Consensus 25 ~~~~~i~v~pvndpp~~~~~-~~~~l~~~~~~~k~l~~~~l~~~d~d~~~-~~l~f~v~~t~~~~~~~~~~~~~g~~~~~ 102 (442)
T KOG3597|consen 25 TDVLRIHVNPVNDPPSLIFP-SGSLLVILEGGQKVLDPELLTAADPDSAP-LPLEFQVLGTSSVPLPVLKFDVPGAPATE 102 (442)
T ss_pred EeeecccccccCCCcceeec-ccceEEeecCCceeccceEeeccCCCCCc-cceEEEEccCCCCCCccceeeccCCcccc
Confidence 34577899999995554543 56667788876544445678999999875 45889988654321 1113332222211
Q ss_pred Eecc-------cccccCCCCcEEEEEEEEEeCCCCCceeEEEEEEEEEecCCCCCccCC-CceEEEEeCCCCCCcEE--E
Q psy11097 632 VTNK-------VFDREGDDGKFVSVTIKATDQGEPSLEGVCSFTVEITDVNDNPPLFDR-QKYVENVKQDASIGTNI--L 701 (817)
Q Consensus 632 ~~~~-------~lD~E~~~~~~~~l~V~a~D~g~p~~s~~~~v~I~V~DvNDn~P~f~~-~~y~~~v~E~~~~g~~v--~ 701 (817)
...+ .+++.........++..++|+- ..+. .+..... ...|.+.. ......|.-.. ...| .
T Consensus 103 Fs~~~v~~g~~~yvh~g~el~~~~~~~~~SDg~---~~S~-~~i~~~~---~~~~~~~~~~~~gL~v~~gS--~~~IT~~ 173 (442)
T KOG3597|consen 103 FSYEEVEDGSLSYVHSGTELRESELQLRVSDGL---LVSE-RAILKVE---ATGPAPHLARNTGLKVLQGS--TAPITPS 173 (442)
T ss_pred eEehHhhcCceeEEecCcccccceEEEEeecce---Eeee-eEEeccc---CCCcceeeecccceEEccCc--cccccHh
Confidence 1111 2333332223456777888863 2222 1111111 22333321 11122232211 1122 2
Q ss_pred EEEEEeCCCCCCceEEEEEecC
Q psy11097 702 RVSASDEDADNNGAIVYTLSAP 723 (817)
Q Consensus 702 ~v~A~D~D~g~n~~i~Y~l~~~ 723 (817)
.+.+.|.|.++.-.+.|.|..+
T Consensus 174 ~L~ved~d~~~d~~v~~~i~~~ 195 (442)
T KOG3597|consen 174 NLSVEDNDSSPDDEVRYDITPP 195 (442)
T ss_pred HceeecCCCCCCcEEEEEecCC
Confidence 4778888865556788888764
No 32
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=58.85 E-value=55 Score=25.74 Aligned_cols=60 Identities=13% Similarity=0.097 Sum_probs=30.9
Q ss_pred CceEEEEEEecCCCCCccEEEecccceEEecccccccCCCCcEEEEEEEEEeCCCCCceeEEEEEEEEE
Q psy11097 604 NGQVKYSIVQQPNQKGAKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEGVCSFTVEIT 672 (817)
Q Consensus 604 n~~v~y~l~~~~~~~~~~F~Id~~tG~i~~~~~lD~E~~~~~~~~l~V~a~D~g~p~~s~~~~v~I~V~ 672 (817)
+-...|+|.+.. ..|..+...+-.+ .+-..+...|+|.|+|.|..........++.|+|.
T Consensus 7 ~~~Y~Y~l~g~d---~~W~~~~~~~~~~------~~~~L~~G~Y~l~V~a~~~~~~~~~~~~~l~i~I~ 66 (66)
T PF07495_consen 7 NIRYRYRLEGFD---DEWITLGSYSNSI------SYTNLPPGKYTLEVRAKDNNGKWSSDEKSLTITIL 66 (66)
T ss_dssp TEEEEEEEETTE---SSEEEESSTS-EE------EEES--SEEEEEEEEEEETTS-B-SS-EEEEEEEE
T ss_pred ceEEEEEEECCC---CeEEECCCCcEEE------EEEeCCCEEEEEEEEEECCCCCcCcccEEEEEEEC
Confidence 445677776432 2355554322122 22222336799999999966543333366666663
No 33
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=56.67 E-value=37 Score=36.46 Aligned_cols=63 Identities=16% Similarity=0.343 Sum_probs=32.9
Q ss_pred CceEEEEEecCcCCCCCcceEEeCCeeEEEEeeece--------------EEEEEeeCCCCCCcccEEEeCceeEEEEc
Q psy11097 713 NGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLD--------------VYYYIVDSPRNEGKDFFEINLQSGEVFTK 777 (817)
Q Consensus 713 n~~i~Y~l~~~~~~~~~~~F~Id~~tG~i~~~~~ld--------------~~y~~~~~~~~~~~~~F~Id~~tG~l~~~ 777 (817)
+|++.|--..+.+ ....|+|++.+|.|.+..--. -.|-++.+..++.--.|+||+.||+|...
T Consensus 254 dGrFLYasNRg~d--sI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~ 330 (346)
T COG2706 254 DGRFLYASNRGHD--SIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLL 330 (346)
T ss_pred CCCEEEEecCCCC--eEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEec
Confidence 3455554333211 234577777777766554222 12333333334445567777777777654
No 34
>PF13753 SWM_repeat: Putative flagellar system-associated repeat
Probab=54.75 E-value=3e+02 Score=29.56 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=13.9
Q ss_pred ccEEEEEEEEEecCCc
Q psy11097 171 DQEYVLYVKAEDQNGR 186 (817)
Q Consensus 171 ~~~y~l~v~a~D~~g~ 186 (817)
+..|.+.+.++|..|.
T Consensus 11 d~~~~v~vt~tD~aGN 26 (317)
T PF13753_consen 11 DGTYTVSVTVTDAAGN 26 (317)
T ss_pred CCcEEEEEEEEeCCCC
Confidence 5679999999999886
No 35
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=47.10 E-value=61 Score=25.47 Aligned_cols=56 Identities=30% Similarity=0.539 Sum_probs=30.3
Q ss_pred EEEEEEeCCCCCCCeEEeCceeEEEeCccCCccccCCCeEEEEEEEEEeCCCCceEE-EEEEEEEE
Q psy11097 300 IRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTS-VELTIRVT 364 (817)
Q Consensus 300 i~y~l~~~g~~~~~F~Id~~tG~i~~~~~LD~E~~~~~~~y~l~V~a~d~~g~~~~~-~~v~I~V~ 364 (817)
.+|.|. |....+..+...+-.+. +-.++ +..|+|.|+|.+..|..... ..+.|+|.
T Consensus 10 Y~Y~l~--g~d~~W~~~~~~~~~~~------~~~L~-~G~Y~l~V~a~~~~~~~~~~~~~l~i~I~ 66 (66)
T PF07495_consen 10 YRYRLE--GFDDEWITLGSYSNSIS------YTNLP-PGKYTLEVRAKDNNGKWSSDEKSLTITIL 66 (66)
T ss_dssp EEEEEE--TTESSEEEESSTS-EEE------EES---SEEEEEEEEEEETTS-B-SS-EEEEEEEE
T ss_pred EEEEEE--CCCCeEEECCCCcEEEE------EEeCC-CEEEEEEEEEECCCCCcCcccEEEEEEEC
Confidence 445554 55556665554321332 33322 48899999999766654322 56666663
No 36
>PF02494 HYR: HYR domain; InterPro: IPR003410 This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin that is composed exclusively of this repeat. This domain probably corresponds to a new superfamily in the immunoglobulin fold. The function of this domain is uncertain it may be involved in cell adhesion. In the Sushi repeat-containing protein (SrpX), this domain is found between two sushi repeats.
Probab=42.22 E-value=2e+02 Score=23.79 Aligned_cols=14 Identities=21% Similarity=0.247 Sum_probs=11.7
Q ss_pred EEEEEEEEEecCCc
Q psy11097 173 EYVLYVKAEDQNGR 186 (817)
Q Consensus 173 ~y~l~v~a~D~~g~ 186 (817)
.|.++.+|+|..|.
T Consensus 58 ~t~V~ytA~D~~GN 71 (81)
T PF02494_consen 58 TTTVTYTATDAAGN 71 (81)
T ss_pred eEEEEEEEEECCCC
Confidence 58899999998764
No 37
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=40.43 E-value=44 Score=25.51 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=22.5
Q ss_pred cccEEEEEEEEEe-CCCCCCCCCCCCCCccccC
Q psy11097 784 KQGAYALEVEARD-GAPSARPNSDGEPNSACTP 815 (817)
Q Consensus 784 ~~~~y~l~V~a~D-~g~p~~~~~~~~~v~v~~~ 815 (817)
..+.|.|+|.|+| .|.........++|-...|
T Consensus 22 ~dG~y~itv~a~D~AGN~s~~~~~~~tiDttaP 54 (54)
T PF13754_consen 22 ADGTYTITVTATDAAGNTSTSSSVTFTIDTTAP 54 (54)
T ss_pred CCccEEEEEEEEeCCCCCCCccceeEEEeCCCC
Confidence 5899999999999 5555555444566655544
No 38
>PF12245 Big_3_2: Bacterial Ig-like domain (group 3); InterPro: IPR022038 This family of proteins is found in bacteria. They have two conserved sequence motifs: AGN and GMT.
Probab=38.07 E-value=1e+02 Score=24.10 Aligned_cols=18 Identities=44% Similarity=0.658 Sum_probs=15.3
Q ss_pred ccccEEEEEEEEEecCCc
Q psy11097 169 QLDQEYVLYVKAEDQNGR 186 (817)
Q Consensus 169 e~~~~y~l~v~a~D~~g~ 186 (817)
+.+..|.|.++|+|..|.
T Consensus 20 ~~dg~yt~~v~a~D~AGN 37 (60)
T PF12245_consen 20 DADGEYTLTVTATDKAGN 37 (60)
T ss_pred cCCccEEEEEEEEECCCC
Confidence 346789999999999886
No 39
>TIGR03660 T1SS_rpt_143 T1SS-143 repeat domain. This model represents a domain of about 143 amino acids that may occur singly or in up to 23 tandem repeats in very large proteins in the genus Vibrio, and in related species such as Legionella pneumophila, Photobacterium profundum, Rhodopseudomonas palustris, Shewanella pealeana, and Aeromonas hydrophila. Proteins with these domains represent a subset of a broader set of proteins with a particular signal for type 1 secretion, consisting of several glycine-rich repeats modeled by pfam00353, followed by a C-terminal domain modeled by TIGR03661. Proteins with this domain tend to share several properties with the RtxA (Repeats in Toxin) protein of Vibrio cholerae, including a large size often containing tandemly repeated domains and a C-terminal signal for type 1 secretion.
Probab=32.90 E-value=2.1e+02 Score=26.71 Aligned_cols=56 Identities=23% Similarity=0.280 Sum_probs=33.0
Q ss_pred ecccccccCC-CCcEEEEEEEEEeCCCCCceeEEEEEEEEEecCCCCCccCCCceEEEEeCCC
Q psy11097 633 TNKVFDREGD-DGKFVSVTIKATDQGEPSLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQDA 694 (817)
Q Consensus 633 ~~~~lD~E~~-~~~~~~l~V~a~D~g~p~~s~~~~v~I~V~DvNDn~P~f~~~~y~~~v~E~~ 694 (817)
+.++||+... ..-.+.|.|.|+|...-. ++.++.|+|.| | .|+..... ...|.|+.
T Consensus 72 L~~~lDH~~g~d~l~l~~~v~a~D~DGD~--s~~~l~VtI~D--D-~P~~~~~~-~~~V~E~~ 128 (137)
T TIGR03660 72 LEGPLDHAAGSDELTLNFPIIATDFDGDT--SSITLPVTIVD--D-VPTITDVD-ALTVDEDD 128 (137)
T ss_pred EcccccCCCCCceEEEeeeEEEEeCCCCc--cccEEEEEEEC--C-CCeecccc-ceEEeccc
Confidence 4445555321 123467888999864322 23588888887 6 58775443 35777743
No 40
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=31.93 E-value=84 Score=23.96 Aligned_cols=26 Identities=38% Similarity=0.558 Sum_probs=17.9
Q ss_pred eEEEEEEEEEeCCCCceEEEEEEEEE
Q psy11097 338 HVYSLIVTATEDSGGFSTSVELTIRV 363 (817)
Q Consensus 338 ~~y~l~V~a~d~~g~~~~~~~v~I~V 363 (817)
..|.++++|+|..|..+....+.|.|
T Consensus 24 G~y~itv~a~D~AGN~s~~~~~~~ti 49 (54)
T PF13754_consen 24 GTYTITVTATDAAGNTSTSSSVTFTI 49 (54)
T ss_pred ccEEEEEEEEeCCCCCCCccceeEEE
Confidence 57999999998777655444444443
No 41
>PF02494 HYR: HYR domain; InterPro: IPR003410 This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin that is composed exclusively of this repeat. This domain probably corresponds to a new superfamily in the immunoglobulin fold. The function of this domain is uncertain it may be involved in cell adhesion. In the Sushi repeat-containing protein (SrpX), this domain is found between two sushi repeats.
Probab=25.37 E-value=3.8e+02 Score=22.00 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=19.2
Q ss_pred eEEEEEEEEEeCCCCceEEEEEEEEE
Q psy11097 338 HVYSLIVTATEDSGGFSTSVELTIRV 363 (817)
Q Consensus 338 ~~y~l~V~a~d~~g~~~~~~~v~I~V 363 (817)
..|.++..|+| ..|..+++.+.|+|
T Consensus 57 G~t~V~ytA~D-~~GN~a~C~f~V~V 81 (81)
T PF02494_consen 57 GTTTVTYTATD-AAGNSATCSFTVTV 81 (81)
T ss_pred ceEEEEEEEEE-CCCCEEEEEEEEEC
Confidence 35789999996 44567789998876
No 42
>PF14539 DUF4442: Domain of unknown function (DUF4442); PDB: 1YOC_B 1SH8_B.
Probab=21.80 E-value=1.6e+02 Score=27.19 Aligned_cols=45 Identities=22% Similarity=0.243 Sum_probs=27.6
Q ss_pred ceeEEEeCccCCccccCCCeEEEEEEEEEeCCCCceEEEEEEEEE
Q psy11097 319 TSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVELTIRV 363 (817)
Q Consensus 319 ~tG~i~~~~~LD~E~~~~~~~y~l~V~a~d~~g~~~~~~~v~I~V 363 (817)
.+|.|+....++.|+...+..+.+.|.+.|..|...+.+.+++.|
T Consensus 88 a~g~v~a~~~~~~e~~~~~~~~~~~v~i~D~~G~~Va~~~~t~~V 132 (132)
T PF14539_consen 88 ARGDVTATAELTEEQIGERGELTVPVEITDADGEVVAEATITWYV 132 (132)
T ss_dssp --S-EEEEEE-TCCHCCHEEEEEEEEEEEETTC-EEEEEEEEEEE
T ss_pred cCCcEEEEEEcCHHHhCCCcEEEEEEEEEECCCCEEEEEEEEEEC
Confidence 456666666666664433467788888888777777777777654
Done!