RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11097
(817 letters)
>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain. Cadherins
are glycoproteins involved in Ca2+-mediated cell-cell
adhesion. The cadherin repeat domains occur as tandem
repeats in the extracellular regions, which are thought
to mediate cell-cell contact when bound to calcium. They
play numerous roles in cell fate, signalling,
proliferation, differentiation, and migration; members
include E-, N-, P-, T-, VE-, CNR-, proto-, and
FAT-family cadherin, desmocollin, and desmoglein, a
large variety of domain architectures with varying
repeat copy numbers. Cadherin-repeat containing proteins
exist as monomers, homodimers, or heterodimers.
Length = 98
Score = 105 bits (263), Expect = 6e-27
Identities = 43/102 (42%), Positives = 57/102 (55%), Gaps = 4/102 (3%)
Query: 576 TYYPKVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTNK 635
+Y V E AP G+ V+ V ATD D G NG+V YSIV F++D TGE+ T K
Sbjct: 1 SYEVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDG--LFSIDPSTGEITTAK 58
Query: 636 VFDREGDDGKFVSVTIKATDQGEPSLEGVCSFTVEITDVNDN 677
DRE + ++T+ ATD G P L + T+ + DVNDN
Sbjct: 59 PLDRE--EQSSYTLTVTATDGGGPPLSSTATVTITVLDVNDN 98
Score = 84.7 bits (210), Expect = 9e-20
Identities = 44/115 (38%), Positives = 59/115 (51%), Gaps = 19/115 (16%)
Query: 257 VYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGAGTFNI 316
Y +V ENA P T+V TV A+D D E+ Y++ G G F+I
Sbjct: 1 SYEVSVPENAPPGTVVLTVSATDPDSGENG------------EVTYSI-VSGNEDGLFSI 47
Query: 317 GPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGG--FSTSVELTIRVTDVNDN 369
P++G + AK LD E + Y+L VTAT D GG S++ +TI V DVNDN
Sbjct: 48 DPSTGEITTAKPLDRE---EQSSYTLTVTAT-DGGGPPLSSTATVTITVLDVNDN 98
Score = 65.4 bits (160), Expect = 4e-13
Identities = 32/117 (27%), Positives = 46/117 (39%), Gaps = 36/117 (30%)
Query: 686 YVENVKQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKK 745
Y +V ++A GT +L VSA+D D+ NG + Y++ + + F I P +G I K
Sbjct: 2 YEVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIV---SGNEDGLFSIDPSTGEITTAK 58
Query: 746 PLDVYYYIVDSPRNEGKDFFEINLQSGEVFTKVVFDREKQGAYALEVEARDGAPSAR 802
PL DRE+Q +Y L V A DG
Sbjct: 59 PL---------------------------------DREEQSSYTLTVTATDGGGPPL 82
Score = 64.6 bits (158), Expect = 8e-13
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 382 NIDEDITTGTSILKVKATDADSGTNAEIEYHVSDDN----FAVDSN-GVINNHKTLDADN 436
++ E+ GT +L V ATD DSG N E+ Y + N F++D + G I K LD +
Sbjct: 5 SVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITTAKPLDRE- 63
Query: 437 NNAYYEFVITAKDKD-------VDVELDVVDRN 462
+ Y +TA D V + V+D N
Sbjct: 64 EQSSYTLTVTATDGGGPPLSSTATVTITVLDVN 96
Score = 63.9 bits (156), Expect = 2e-12
Identities = 31/83 (37%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 109 PMQAVVQLNAPPNTPVFTLQARDPDSDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTD 166
+ V NAPP T V T+ A DPDS N + Y IV G F +D +G + T
Sbjct: 1 SYEVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTGEITTAKP- 59
Query: 167 PFQLDQE----YVLYVKAEDQNG 185
LD+E Y L V A D G
Sbjct: 60 ---LDREEQSSYTLTVTATDGGG 79
Score = 60.8 bits (148), Expect = 2e-11
Identities = 33/106 (31%), Positives = 43/106 (40%), Gaps = 25/106 (23%)
Query: 476 IHIRENVTVSTVVTSVKA-----------RFGFVGGSTSSGQFVIEDITGVIRLNSKSIS 524
+ + EN TVV +V A + V G+ G F I+ TG I
Sbjct: 4 VSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGN-EDGLFSIDPSTGEITTAK---P 59
Query: 525 LDR---DKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDN 567
LDR Y L VTA D G ++TA V + + DVNDN
Sbjct: 60 LDREEQSSYTLTVTATDGG-------GPPLSSTATVTITVLDVNDN 98
>gnl|CDD|214520 smart00112, CA, Cadherin repeats. Cadherins are glycoproteins
involved in Ca2+-mediated cell-cell adhesion. Cadherin
domains occur as repeats in the extracellular regions
which are thought to mediate cell-cell contact when
bound to calcium.
Length = 81
Score = 89.3 bits (222), Expect = 1e-21
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 595 HATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKAT 654
ATD D G NG+V YSI+ + F++D ETGE+ T K DRE + ++T++AT
Sbjct: 1 SATDADSGENGKVTYSILSGNDDG--LFSIDPETGEITTTKPLDRE--EQPEYTLTVEAT 56
Query: 655 DQGEPSLEGVCSFTVEITDVNDNPP 679
D G P L + T+ + DVNDN P
Sbjct: 57 DGGGPPLSSTATVTITVLDVNDNAP 81
Score = 64.7 bits (158), Expect = 5e-13
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 299 EIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGG--FSTS 356
++ Y++ G G F+I P +G + K LD E+ + Y+L V AT D GG S++
Sbjct: 12 KVTYSI-LSGNDDGLFSIDPETGEITTTKPLDREEQPE---YTLTVEAT-DGGGPPLSST 66
Query: 357 VELTIRVTDVNDNAP 371
+TI V DVNDNAP
Sbjct: 67 ATVTITVLDVNDNAP 81
Score = 51.6 bits (124), Expect = 2e-08
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 14/81 (17%)
Query: 492 KARFGFVGGSTSSGQFVIEDITGVIRLNSKSISLDRDK---YELNVTAVDDGACCANGDQ 548
K + + G+ G F I+ TG I LDR++ Y L V A D G
Sbjct: 12 KVTYSILSGNDD-GLFSIDPETGEITTTK---PLDREEQPEYTLTVEATD-------GGG 60
Query: 549 SVHTATAVVVVFITDVNDNKP 569
++TA V + + DVNDN P
Sbjct: 61 PPLSSTATVTITVLDVNDNAP 81
Score = 50.8 bits (122), Expect = 4e-08
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 13/82 (15%)
Query: 397 KATDADSGTNAEIEYHVSDDN----FAVDSN-GVINNHKTLDADNNNAYYEFVITAKDKD 451
ATDADSG N ++ Y + N F++D G I K LD + Y + A D
Sbjct: 1 SATDADSGENGKVTYSILSGNDDGLFSIDPETGEITTTKPLDRE-EQPEYTLTVEATDGG 59
Query: 452 -------VDVELDVVDRNNKPP 466
V + V+D N+ P
Sbjct: 60 GPPLSSTATVTITVLDVNDNAP 81
Score = 45.8 bits (109), Expect = 3e-06
Identities = 23/99 (23%), Positives = 33/99 (33%), Gaps = 36/99 (36%)
Query: 704 SASDEDADNNGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLDVYYYIVDSPRNEGKD 763
SA+D D+ NG + Y++
Sbjct: 1 SATDADSGENGKVTYSIL------------------------------------SGNDDG 24
Query: 764 FFEINLQSGEVFTKVVFDREKQGAYALEVEARDGAPSAR 802
F I+ ++GE+ T DRE+Q Y L VEA DG
Sbjct: 25 LFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGGPPL 63
Score = 44.6 bits (106), Expect = 6e-06
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 128 QARDPDSDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDPFQLDQEYVLYVKAEDQNG 185
A D DS N + Y I+ G F +D +G + T + EY L V+A D G
Sbjct: 1 SATDADSGENGKVTYSILSGNDDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDGGG 60
>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain.
Length = 92
Score = 80.8 bits (200), Expect = 2e-18
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 581 VEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTNKVFDRE 640
V E AP G+ V+ V ATD D G NG++ YSI+ G F +D +TG++ T K DRE
Sbjct: 5 VPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGP--GGWFRIDPDTGDLSTTKPLDRE 62
Query: 641 GDDGKFVSVTIKATDQGEPSLEGVCSFTVEIT 672
+T+ ATD G P L + T+ +
Sbjct: 63 SIG--EYELTVLATDSGGPPLSSTTTVTITVL 92
Score = 58.8 bits (143), Expect = 9e-11
Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 117 NAPPNTPVFTLQARDPDSDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDPFQLDQE- 173
NAP T V T+ A D D N I Y I+ GG F +D +G + T LD+E
Sbjct: 8 NAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGGWFRIDPDTGDLSTTK----PLDRES 63
Query: 174 ---YVLYVKAEDQNGR 186
Y L V A D G
Sbjct: 64 IGEYELTVLATDSGGP 79
Score = 55.0 bits (133), Expect = 2e-09
Identities = 39/108 (36%), Positives = 48/108 (44%), Gaps = 19/108 (17%)
Query: 258 YTPNVDENAGPNTLVTTVVASDKD-GDNVSIISVKAKSFADREIRYTLKAQGQGAGTFNI 316
Y+ +V ENA T V TV A+D D G N I Y++ G G G F I
Sbjct: 1 YSASVPENAPVGTEVLTVTATDADLGPNGR-------------IFYSILGGGPG-GWFRI 46
Query: 317 GPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVELTIRVT 364
P +G + K LD E Y L V AT DSGG S T+ +T
Sbjct: 47 DPDTGDLSTTKPLDRE---SIGEYELTVLAT-DSGGPPLSSTTTVTIT 90
Score = 54.2 bits (131), Expect = 3e-09
Identities = 30/118 (25%), Positives = 42/118 (35%), Gaps = 38/118 (32%)
Query: 686 YVENVKQDASIGTNILRVSASDEDADNNGAIVYTLSA-PYNQMDLEYFEIQPESGWIVLK 744
Y +V ++A +GT +L V+A+D D NG I Y++ F I P++G +
Sbjct: 1 YSASVPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGGW----FRIDPDTGDLSTT 56
Query: 745 KPLDVYYYIVDSPRNEGKDFFEINLQSGEVFTKVVFDREKQGAYALEVEARDGAPSAR 802
KPL DRE G Y L V A D
Sbjct: 57 KPL---------------------------------DRESIGEYELTVLATDSGGPPL 81
Score = 53.1 bits (128), Expect = 8e-09
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 383 IDEDITTGTSILKVKATDADSGTNAEIEY----HVSDDNFAVDS-NGVINNHKTLDADNN 437
+ E+ GT +L V ATDAD G N I Y F +D G ++ K LD ++
Sbjct: 5 VPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGGWFRIDPDTGDLSTTKPLDRESI 64
Query: 438 NAYYEFVITAKDKD 451
YE + A D
Sbjct: 65 G-EYELTVLATDSG 77
Score = 39.2 bits (92), Expect = 6e-04
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 25/102 (24%)
Query: 475 PIHIRENVTVSTVVTSVKA-----------RFGFVGGSTSSGQFVIEDITGVIRLNSKSI 523
+ EN V T V +V A + +GG G F I+ TG +
Sbjct: 2 SASVPENAPVGTEVLTVTATDADLGPNGRIFYSILGGG-PGGWFRIDPDTGDLSTTK--- 57
Query: 524 SLDR---DKYELNVTAVDDGACCANGDQSVHTATAVVVVFIT 562
LDR +YEL V A D +G + ++T V + +
Sbjct: 58 PLDRESIGEYELTVLATD------SGGPPL-SSTTTVTITVL 92
>gnl|CDD|206635 cd00031, CA_like, Cadherin repeat-like domain. Cadherins are
glycoproteins involved in Ca2+-mediated cell-cell
adhesion. The cadherin repeat domains occur as tandem
repeats in the extracellular regions, which are thought
to mediate cell-cell contact when bound to calcium. They
play numerous roles in cell fate, signalling,
proliferation, differentiation, and migration; members
include E-, N-, P-, T-, VE-, CNR-, proto-, and
FAT-family cadherin, desmocollin, and desmoglein, a
large variety of domain architectures with varying
repeat copy numbers. Cadherin-repeat containing proteins
exist as monomers, homodimers, or heterodimers. This
family also includes the cadherin-like repeats of
extracellular alpha-dystroglycan.
Length = 98
Score = 37.7 bits (87), Expect = 0.003
Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 10/100 (10%)
Query: 274 TVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGA----GTFNIGPTSGIVKLAKEL 329
+ V G V + +K G + P SGI++ ++L
Sbjct: 5 SAVEGRSRGSFR----VSIPTDLIASSGEIIKISAAGKEALPSWLHWEPHSGILEGLEKL 60
Query: 330 DFEDLRQPHVYSLIVTATEDSGGFSTSVELTIRVTDVNDN 369
D ED ++ + + TS +I V D NDN
Sbjct: 61 DREDKGVHYISVSAASLGANV--PQTSSVFSIEVYDENDN 98
>gnl|CDD|220006 pfam08758, Cadherin_pro, Cadherin prodomain like. Cadherins are a
family of proteins that mediate calcium dependent
cell-cell adhesion. They are activated through cleavage
of a prosequence in the late Golgi. This domain
corresponds to the folded region of the prosequence, and
is termed the prodomain. The prodomain shows structural
resemblance to the cadherin domain, but lacks all the
features known to be important for cadherin-cadherin
interactions.
Length = 90
Score = 32.6 bits (75), Expect = 0.12
Identities = 17/80 (21%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 371 PKFELPDYQAHNIDEDITTGTSILKVKATDADSGTNAEIEYHVSDDNFAVDSNGVINNHK 430
P F Y + + G + +VK D I+Y SD +F V+ +G + +
Sbjct: 4 PGFSEEVYTFL-VPRRLEEGQPLGRVKFNDCKG--RRRIQYESSDPDFKVNEDGTVYAKR 60
Query: 431 TLDADNNNAYYEFVITAKDK 450
++ + F++ A D
Sbjct: 61 SVTLHSEQK--SFLVHAWDS 78
>gnl|CDD|214795 smart00736, CADG, Dystroglycan-type cadherin-like domains.
Cadherin-homologous domains present in metazoan
dystroglycans and alpha/epsilon sarcoglycans, yeast
Axl2p and in a very large protein from magnetotactic
bacteria. Likely to bind calcium ions.
Length = 97
Score = 32.3 bits (74), Expect = 0.21
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 339 VYSLIVTATEDSGGFSTSVELTIRVTDVNDN 369
SL VTAT DS G S S TI V + ND
Sbjct: 68 SLSLKVTAT-DSSGASASDTFTITVVNTNDA 97
>gnl|CDD|202716 pfam03646, FlaG, FlaG protein. Although important for flagella the
exact function of this protein is unknown.
Length = 107
Score = 31.4 bits (72), Expect = 0.46
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 614 QPNQKGAKFTVDEETGEVVTNKVFDREGDD 643
Q +F+VDE++G VV KV D+E +
Sbjct: 51 QSLNTNLEFSVDEDSGRVVV-KVVDKETGE 79
>gnl|CDD|218722 pfam05732, RepL, Firmicute plasmid replication protein (RepL).
This family consists of Firmicute RepL proteins which
are involved in plasmid replication.
Length = 165
Score = 30.6 bits (69), Expect = 2.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 618 KGAKFTVDEETGEVVTNKVFDREGDDGKFVSVTI 651
KG + +++ TGEV+ +V E D FV V I
Sbjct: 10 KGTETYINQSTGEVIEFQVLYIEERDFNFVKVWI 43
>gnl|CDD|216930 pfam02210, Laminin_G_2, Laminin G domain. This family includes the
Thrombospondin N-terminal-like domain, a Laminin G
subfamily.
Length = 124
Score = 29.3 bits (66), Expect = 2.9
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 136 HNIHYFIVRDRTGGRFEVDERSGVVRTRGTDPFQLDQEYVLYV 178
H + + RD VD + V L+ LY+
Sbjct: 57 HRVS--VSRDGRSLTLSVDGGTVVSEALPGSSSILNLNGPLYL 97
>gnl|CDD|176853 cd05018, CoxG, Carbon monoxide dehydrogenase subunit G (CoxG).
CoxG has been shown, in Oligotropha carboxidovorans, to
anchor the carbon monoxide (CO) dehydrogenase to the
cytoplasmic membrane. The gene encoding CoxG is part of
the Cox cluster (coxBCMSLDEFGHIK) located on a
low-copy-number, circular, megaplasmid pHCG3. This
cluster includes genes encoding subunits of CO
dehydrogenase and several accessory components involved
in the utilization of CO. This family belongs to the
SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain
superfamily of proteins that bind hydrophobic ligands.
SRPBCC domains have a deep hydrophobic ligand-binding
pocket and they bind diverse ligands.
Length = 144
Score = 29.9 bits (68), Expect = 3.1
Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 17/72 (23%)
Query: 264 ENAGPNTLVTTVVASDKDGDNVSIISVKAK-------SFADREIRYTLKAQGQGAGTFNI 316
E GPN TV + + VK S D YT+ +G+G F
Sbjct: 37 EKIGPNEYEATVK--------LKVGPVKGTFKGKVELSDLDPPESYTITGEGKGGAGFVK 88
Query: 317 GPTSGIVKLAKE 328
G + V L +
Sbjct: 89 G--TARVTLEPD 98
>gnl|CDD|213540 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase. This enzyme
oxidizes protoporphyrinogen IX to protoporphyrin IX, a
precursor of heme and chlorophyll. Bacillus subtilis
HemY also has coproporphyrinogen III to coproporphyrin
III oxidase activity in a heterologous expression
system, although the role for this activity in vivo is
unclear. This protein is a flavoprotein and has a
beta-alpha-beta dinucleotide binding motif near the
amino end [Biosynthesis of cofactors, prosthetic groups,
and carriers, Heme, porphyrin, and cobalamin].
Length = 462
Score = 30.6 bits (69), Expect = 3.4
Identities = 11/52 (21%), Positives = 21/52 (40%)
Query: 125 FTLQARDPDSDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDPFQLDQEYVL 176
+ L+ P+ + DR GG+ + + G + RG D F ++
Sbjct: 19 YYLEKEIPELPVELTLVEASDRVGGKIQTVKEDGYLIERGPDSFLERKKSAP 70
>gnl|CDD|165287 PHA02984, PHA02984, hypothetical protein; Provisional.
Length = 286
Score = 30.5 bits (69), Expect = 3.8
Identities = 15/98 (15%), Positives = 42/98 (42%), Gaps = 14/98 (14%)
Query: 3 SKYLMNCIVNESLKQNMTRYRTRYKIMNSKYLMNCIVNESLKQNMTSIPWIQITDDAFII 62
+++ + LK+ +++ + + ++ I+NE + +N + + + I
Sbjct: 8 PNWVIKYVKKLLLKEFISK--------SDEKIIKTIINEFINENHSVLNILNINS----- 54
Query: 63 VVNWVIEQLLDRDVINHEVVHTDNQRVIIHVKDVNDES 100
+ I + ++I+ + V+ QR I + + ES
Sbjct: 55 -LTVNINNCEESNLIDFKDVNIKPQRHISYYNNYTLES 91
>gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs. Extended SDRs are distinct
from classical SDRs. In addition to the Rossmann fold
(alpha/beta folding pattern with a central beta-sheet)
core region typical of all SDRs, extended SDRs have a
less conserved C-terminal extension of approximately
100 amino acids. Extended SDRs are a diverse collection
of proteins, and include isomerases, epimerases,
oxidoreductases, and lyases; they typically have a
TGXXGXXG cofactor binding motif. SDRs are a
functionally diverse family of oxidoreductases that
have a single domain with a structurally conserved
Rossmann fold, an NAD(P)(H)-binding region, and a
structurally diverse C-terminal region. Sequence
identity between different SDR enzymes is typically in
the 15-30% range; they catalyze a wide range of
activities including the metabolism of steroids,
cofactors, carbohydrates, lipids, aromatic compounds,
and amino acids, and act in redox sensing. Classical
SDRs have an TGXXX[AG]XG cofactor binding motif and a
YXXXK active site motif, with the Tyr residue of the
active site motif serving as a critical catalytic
residue (Tyr-151, human 15-hydroxyprostaglandin
dehydrogenase numbering). In addition to the Tyr and
Lys, there is often an upstream Ser and/or an Asn,
contributing to the active site; while substrate
binding is in the C-terminal region, which determines
specificity. The standard reaction mechanism is a
4-pro-S hydride transfer and proton relay involving the
conserved Tyr and Lys, a water molecule stabilized by
Asn, and nicotinamide. Atypical SDRs generally lack the
catalytic residues characteristic of the SDRs, and
their glycine-rich NAD(P)-binding motif is often
different from the forms normally seen in classical or
extended SDRs. Complex (multidomain) SDRs such as
ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif.
Length = 200
Score = 30.0 bits (68), Expect = 4.1
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 66 WVIEQLLDRDVINHEVVHTDNQRVIIH 92
++ +LL+R HEVV D V++H
Sbjct: 13 HLVRRLLERG---HEVVVIDRLDVVVH 36
>gnl|CDD|214999 smart01055, Cadherin_pro, Cadherin prodomain like. Cadherins are a
family of proteins that mediate calcium dependent
cell-cell adhesion. They are activated through cleavage
of a prosequence in the late Golgi. This domain
corresponds to the folded region of the prosequence, and
is termed the prodomain. The prodomain shows structural
resemblance to the cadherin domain, but lacks all the
features known to be important for cadherin-cadherin
interactions.
Length = 87
Score = 27.6 bits (62), Expect = 7.1
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 371 PKFELPDYQAHNIDEDITTGTSILKVKATDADSGTNAEIEYHVSDDNFAVDSNGVI 426
P F Y H + + G + +V + +A +++ SD +F V +G +
Sbjct: 3 PGFSEEKYTFH-VPSHLEAGQPLGRVNFEECL--GSARLQFESSDPDFRVLEDGTV 55
>gnl|CDD|130598 TIGR01535, glucan_glucosid, glucan 1,4-alpha-glucosidase. Glucan
1,4-alpha-glucosidase catalyzes the hydrolysis of
terminal 1,4-linked alpha-D-glucose residues from
non-reducing ends of polysaccharides, releasing a
beta-D-glucose monomer. Some forms of this enzyme can
hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds
in polysaccharides as well [Energy metabolism,
Biosynthesis and degradation of polysaccharides].
Length = 648
Score = 29.4 bits (66), Expect = 8.2
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 684 QKYVENVKQDASIGTNILRVS----ASDEDADNNGAIVYTLSAPYNQ 726
+KY+ ++ G ++ VS + ED N GA + +LS P+
Sbjct: 236 EKYLNSLNNFNGKGNSLYYVSMMILKAHEDKTNPGAYIASLSIPWGD 282
>gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase.
Length = 409
Score = 29.1 bits (65), Expect = 9.1
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 712 NNGAIVYTLSAPYNQMDLEYFEIQPESGW 740
G +Y L A + +++ Y ++ PE GW
Sbjct: 127 RPGFPIYELCAAFRHLEVRYVDLLPEKGW 155
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.132 0.379
Gapped
Lambda K H
0.267 0.0746 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 41,240,322
Number of extensions: 4114674
Number of successful extensions: 2416
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2391
Number of HSP's successfully gapped: 50
Length of query: 817
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 712
Effective length of database: 6,280,432
Effective search space: 4471667584
Effective search space used: 4471667584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.0 bits)