RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11097
(817 letters)
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 318 bits (818), Expect = e-101
Identities = 273/385 (70%), Positives = 295/385 (76%), Gaps = 64/385 (16%)
Query: 84 TDNQRVIIHVKDVNDESPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDSDHNIHYFIV 143
TDNQRVII VKDVNDE PYFINRPLPMQAVVQLNAPPNTPVFTLQARDPD+DHNIHYFIV
Sbjct: 92 TDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYFIV 151
Query: 144 RDRTGGRFEVDERSGVVRTRGTDPFQLDQEYVLYVKAEDQNGRKDERKFQSTPEERLSIV 203
RDRTGGRFEVDERSGVVRTRGTD FQLD EYVLYVKAEDQNG+ D+R+FQSTPEERLSIV
Sbjct: 152 RDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIV 211
Query: 204 GGKRAPQFYMPSYEAEIPENQKKDTEYPSMTGTATVRIYTKNKNDEEPKFSQQVYTPNVD 263
GGKRAPQFYMPSYEAEIPENQK
Sbjct: 212 GGKRAPQFYMPSYEAEIPENQK-------------------------------------- 233
Query: 264 ENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIV 323
++ + ++ A DREIRYTLKAQGQGAGTFNIGPTSGIV
Sbjct: 234 ----KDSDIISIKAKSFA---------------DREIRYTLKAQGQGAGTFNIGPTSGIV 274
Query: 324 KLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVELTIRVTDVNDNAPKFELPDYQAHNI 383
KLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSV+LTIRVTDVNDNAPKFELPDYQAHN+
Sbjct: 275 KLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNV 334
Query: 384 DEDITTGTSILKVKATDADSGTNAEIEYHVSDDNFAVDSNGVINNHKTLDADNNNAYYEF 443
DEDI GTSIL+VKA D+DSG+NAEIEY VSDD+FAVDSNG+I N+K LDADNNNAYYEF
Sbjct: 335 DEDIPLGTSILRVKAMDSDSGSNAEIEYLVSDDHFAVDSNGIIVNNKQLDADNNNAYYEF 394
Query: 444 VITAKDK-------DVDVELDVVDR 461
++TAKDK V + ++
Sbjct: 395 IVTAKDKGEPPKSGVATVRVYTKNK 419
Score = 233 bits (597), Expect = 4e-69
Identities = 102/449 (22%), Positives = 171/449 (38%), Gaps = 69/449 (15%)
Query: 261 NVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGAGTFNIGPTS 320
V P + ++ DGD + + D+E + ++ + T+
Sbjct: 3 RVTRAVRP---TKRIEFTEADGDTEGKSVFQLEKETDKE-TFKIRDDNP----WVTVETN 54
Query: 321 GIVKLAKELDFEDLRQPHVYSLIVTATEDSGG----FSTSVELTIRVTDVNDNAPKF--E 374
G V++ K+ D+E+L V T ++ + + I V DVND P F
Sbjct: 55 GAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINR 114
Query: 375 LPDYQAHNIDEDITTGTSILKVKATDADSGTNAEIEYHVSDDN----FAVDSN-GVINNH 429
QA + + T + ++A D D+ N I Y + D F VD GV+
Sbjct: 115 PLPMQA-VVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSGVVRTR 171
Query: 430 KTLDADNNNAYYEFVITAKDK-----------DVDVELDVVDRNNKPPLWDNAIYGPIHI 478
T + Y + A+D+ + L +V + P + Y I
Sbjct: 172 GTDLFQLDMEY-VLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSY-EAEI 228
Query: 479 RENVTVSTVVTSVKA--------RFGFVGGSTSSGQFVIEDITGVIRLNSKSISLDR--- 527
EN + + S+KA R+ +G F I +G+++L LD
Sbjct: 229 PENQKKDSDIISIKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAK---ELDFEDL 285
Query: 528 ---DKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKPVFRECSTYYPKVEEG 584
Y L VTA +D + + + + +TDVNDN P F V+E
Sbjct: 286 RQPHVYSLIVTATEDS--------GGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDED 337
Query: 585 APNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTNKVFDREGDDG 644
P G+ +++V A D D G N +++Y + F VD G +V NK D + ++
Sbjct: 338 IPLGTSILRVKAMDSDSGSNAEIEYLVSDDH------FAVD-SNGIIVNNKQLDADNNNA 390
Query: 645 KFVSVTIKATDQGEPSLEGVCSFTVEITD 673
+ + A D+GEP GV + V +
Sbjct: 391 YY-EFIVTAKDKGEPPKSGVATVRVYTKN 418
Score = 222 bits (567), Expect = 6e-65
Identities = 90/463 (19%), Positives = 161/463 (34%), Gaps = 100/463 (21%)
Query: 380 AHNIDEDITTGTSILKVKATDADSGTNAEIEYHVSDDN-------------FAVDSNGVI 426
+ + + +++ T+AD T + + + + V++NG +
Sbjct: 1 SRRVTRAVRPTK---RIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAV 57
Query: 427 NNHKTLD-----ADNNNAYYEFVITAKDKD-------VDVELDVVDRNNKPPLWDNAIYG 474
K D + ++ + V + V D N++PP + N
Sbjct: 58 RVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLP 117
Query: 475 -PIHIRENVTVSTVVTSVKA---------RFGFVGGSTSSGQFVIEDITGVIRLNSKSIS 524
++ N +T V +++A + V T G+F +++ +GV+R +
Sbjct: 118 MQAVVQLNAPPNTPVFTLQARDPDTDHNIHYFIVRDRTG-GRFEVDERSGVVRTRG---T 173
Query: 525 LDR---DKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKPVFRECSTYYPKV 581
+Y L V A D D +T + I P F +Y ++
Sbjct: 174 DLFQLDMEYVLYVKAEDQNG---KVDDRRFQSTPEERLSIVG-GKRAPQF-YMPSYEAEI 228
Query: 582 EEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTNKVFDREG 641
E S +I + A + +++Y++ Q G F + +G V K D E
Sbjct: 229 PENQKKDSDIISIKAKSFA---DREIRYTLKAQGQGAG-TFNIGPTSGIVKLAKELDFED 284
Query: 642 DDGKFV-SVTIKATDQGEPSLEGVCSFTVEITDVNDNPPLFDRQKY-VENVKQDASIGTN 699
V S+ + AT+ T+ +TDVNDN P F+ Y NV +D +GT+
Sbjct: 285 LRQPHVYSLIVTATEDS-GGFSTSVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTS 343
Query: 700 ILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLDVYYYIVDSPRN 759
ILRV A D D+ +N I Y +S +
Sbjct: 344 ILRVKAMDSDSGSNAEIEYLVSDDH----------------------------------- 368
Query: 760 EGKDFFEINLQSGEVFTKVVFDRE-KQGAYALEVEARD-GAPS 800
F ++ +G + D + Y V A+D G P
Sbjct: 369 -----FAVD-SNGIIVNNKQLDADNNNAYYEFIVTAKDKGEPP 405
Score = 183 bits (466), Expect = 6e-51
Identities = 99/482 (20%), Positives = 161/482 (33%), Gaps = 112/482 (23%)
Query: 122 TPVFTLQARDPDSDHN--IHYFIVRDRTGGRFEVD--------ERSGVVRTRGTDPFQLD 171
P ++ + D D + + ++ F++ E +G VR + + D
Sbjct: 9 RPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKK----KWD 64
Query: 172 QEYVLYVKAEDQNGRKDERKFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDTEYP 231
E E + T + + I
Sbjct: 65 YE---------------ELGPEKTIDFWVIIT--------------------NMGHNAGI 89
Query: 232 SMTGTATVRIYTKNKNDEEPKFSQQV--YTPNVDENAGPNTLVTTVVASDKD-GDNVSII 288
T V I K+ NDE P F + V NA PNT V T+ A D D N
Sbjct: 90 KYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN---- 145
Query: 289 SVKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATE 348
I Y + + + G F + SG+V+ F+ Y L V A
Sbjct: 146 -----------IHYFI-VRDRTGGRFEVDERSGVVRTRGTDLFQLDM---EYVLYVKAE- 189
Query: 349 DSGG------FSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDAD 402
D G F ++ E + + AP+F +P Y+A I E+ + I+ +KA
Sbjct: 190 DQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAE-IPENQKKDSDIISIKAKSFA 247
Query: 403 SG-TNAEIEYHVSDDN-FAVDSN-GVINNHKTLD--ADNNNAYYEFVITAKDK------D 451
++ F + G++ K LD Y ++TA +
Sbjct: 248 DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTS 307
Query: 452 VDVELDVVDRNNKPPLWDNAIYGPIHIRENVTVSTVVTSVKAR------FGFVGGSTSSG 505
VD+ + V D N+ P ++ Y ++ E++ + T + VKA + S
Sbjct: 308 VDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEYLVSDD 367
Query: 506 QFVIEDITGVIRLNSKSISLDR----DKYELNVTAVDDGACCANGDQSVHTATAVVVVFI 561
F + D G+I N LD YE VTA D G + + A V V+
Sbjct: 368 HFAV-DSNGIIVNNK---QLDADNNNAYYEFIVTAKDKG-------EPPKSGVATVRVYT 416
Query: 562 TD 563
+
Sbjct: 417 KN 418
Score = 135 bits (343), Expect = 2e-34
Identities = 38/238 (15%), Positives = 66/238 (27%), Gaps = 53/238 (22%)
Query: 580 KVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPN------QKGAKFTVDEETGEVVT 633
+V P ++ T+ D G+ + + ++ + + + E G V
Sbjct: 3 RVTR---AVRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRV 59
Query: 634 NKVFDREGDDG----KFVSVTIKATDQGEPSLEGVCSFTVEITDVNDNPPLFDRQ--KYV 687
K +D E F + + + DVND PP F +
Sbjct: 60 KKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQ 119
Query: 688 ENVKQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPL 747
V+ +A T + + A D D D+N I Y + FE+ SG + +
Sbjct: 120 AVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIV---RDRTGGRFEVDERSGVVRTRGTD 174
Query: 748 DVYYYIVDSPRNEGKDFFEINLQSGEVFTKVVFDREKQGAYALEVEARDGAPSARPNS 805
+ Y L V+A D
Sbjct: 175 ---------------------------------LFQLDMEYVLYVKAEDQNGKVDDRR 199
Score = 94.7 bits (236), Expect = 1e-20
Identities = 56/305 (18%), Positives = 92/305 (30%), Gaps = 88/305 (28%)
Query: 73 DRDVINHEVVHTDNQRVIIHVKDVNDESPYFINRPLPMQAVVQLNAPPNTPVFTLQARDP 132
D++ + + + +P F +A + N ++ + +++A+
Sbjct: 190 DQNGKVDDRRFQSTPEERLSI-VGGKRAPQFYMPSY--EAEIPENQKKDSDIISIKAKSF 246
Query: 133 DSDHNIHYFIVRDRTG-GRFEVDERSGVVRTRGTDPFQLDQE-------YVLYVKAEDQN 184
I Y + G G F + SG+V+ LD E Y L V A + +
Sbjct: 247 ADRE-IRYTLKAQGQGAGTFNIGPTSGIVKLAKE----LDFEDLRQPHVYSLIVTATEDS 301
Query: 185 GRKDERKFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDTEYPSMTGTATVRIYTK 244
+ + + I
Sbjct: 302 ----------------------------------------------GGFSTSVDLTIRVT 315
Query: 245 NKNDEEPKFSQQVYT-PNVDENAGPNTLVTTVVASDKD-GDNVSIISVKAKSFADREIRY 302
+ ND PKF Y NVDE+ T + V A D D G N EI Y
Sbjct: 316 DVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSN-------------AEIEY 362
Query: 303 TLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGG--FSTSVELT 360
+ F + GI+ K+LD ++ Y IVTA D G S +
Sbjct: 363 LVS-----DDHFAVDSN-GIIVNNKQLDADNNN--AYYEFIVTAK-DKGEPPKSGVATVR 413
Query: 361 IRVTD 365
+ +
Sbjct: 414 VYTKN 418
Score = 40.8 bits (96), Expect = 0.001
Identities = 19/121 (15%), Positives = 36/121 (29%), Gaps = 37/121 (30%)
Query: 688 ENVKQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPL 747
V + R+ ++ D D G V+ L D E F+I+ ++ W+ ++
Sbjct: 2 RRVTRAVRPTK---RIEFTEADGDTEGKSVFQLEKE---TDKETFKIRDDNPWVTVET-- 53
Query: 748 DVYYYIVDSPRNEGKDFFEINLQSGEVFTKVVFDREKQGA------YALEVEARDGAPSA 801
+G V K +D E+ G + + A
Sbjct: 54 -----------------------NGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIK 90
Query: 802 R 802
Sbjct: 91 Y 91
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 307 bits (787), Expect = 8e-92
Identities = 138/763 (18%), Positives = 238/763 (31%), Gaps = 157/763 (20%)
Query: 87 QRVIIHVKDVNDESPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDSDHNIHYFIVRDR 146
Q V DV+ P F + V + + + D + + Y +
Sbjct: 21 QVVPSINADVSGCKPGFSSAEYIFS-VNRRELERGRKLGKVNFSDCTTRKHGLYDV---- 75
Query: 147 TGGRFEVDERSGVVRTRGTDPFQLDQEYVLYVKAEDQNGRKDERKFQSTPEERLSIVGGK 206
RF V V+ R D ++ + S
Sbjct: 76 GDSRFRVLPDGTVLVKRHVK-LHKDTKFTISTWDARGIKHSTNIAVASK----------- 123
Query: 207 RAPQFYMPSYEAEIPENQKKDTEYPSMTGTATVRIYTKNKNDEEPKFSQQVYTPN---VD 263
+ + + + ++ + + T + K ++ + V
Sbjct: 124 ------------------RHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVS 165
Query: 264 ENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGA---GTFNIGPTS 320
EN +V + D ++ Y++ QG G F I +
Sbjct: 166 ENE-RGPFPKRLVQIKSNKDR------------FNKVYYSITGQGADNPPQGVFRIEWET 212
Query: 321 GIVKLAKELDFEDLRQPHVYSLIVTATEDSGG--FSTSVELTIRVTDVNDNAPKFELPDY 378
G + + + LD E+ + Y L A G +E+TI V D NDN PKF +
Sbjct: 213 GWMLVTRPLDREEYDK---YVLSSHAV-SENGSPVEEPMEITINVIDQNDNRPKFTQDVF 268
Query: 379 QAHNIDEDITTGTSILKVKATDADS---GTNAEIEYHVSDDN--------FAVDSN-GVI 426
+ ++ E + GT ++ V ATD D N + Y + + F ++ GVI
Sbjct: 269 RG-SVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVI 327
Query: 427 N-NHKTLDADNNNAYYEFVITAKDKD-------VDVELDVVDRNNKPPLWDNAIYGPIHI 478
+ LD + Y + A D + + + D N+ P++D Y +
Sbjct: 328 SLIGTGLDREKFP-EYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYT-ALV 385
Query: 479 RENVTVSTVVTSVKA-----------RFGFVGGSTSSGQFVIE----DITGVIRLNSKSI 523
EN + V + + + G F I G++
Sbjct: 386 PEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAK--- 441
Query: 524 SLDR---DKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKPVFRECSTYYPK 580
LD +Y L +T + + T+TA V V + DVN+ P F +
Sbjct: 442 GLDFELRKQYVLQITVENA----EPFSVPLPTSTATVTVTVEDVNEA-PFFVP-AVSRVD 495
Query: 581 VEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTNKVFDRE 640
V E G +I + A D DK ++ Y I P + TV+++ G V N DRE
Sbjct: 496 VSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPAR---WLTVNKDNGIVTGNGNLDRE 552
Query: 641 GDDGKFVS--VTIKATDQGEPSLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGT 698
+ K + V + TD G G + + + DVNDN P+ + + +
Sbjct: 553 SEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQV- 611
Query: 699 NILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLDVYYYIVDSPR 758
++ SD D N PY + S
Sbjct: 612 ----LTISDADIPPNT-------YPY------KVSLSHGS-------------------- 634
Query: 759 NEGKDFFEINLQSGEVFTKVVFDREKQGAYALEVEARD-GAPS 800
+ G + K+G Y++ V D
Sbjct: 635 --DLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNP 675
Score = 259 bits (663), Expect = 2e-74
Identities = 120/673 (17%), Positives = 221/673 (32%), Gaps = 150/673 (22%)
Query: 71 LLDRDVINHEVVHTDNQRVIIHVKDVNDESPYFINR---PLPMQAVVQLNAPPNTPVFTL 127
+ + + E H+ + ++ + R P++ P + +
Sbjct: 120 VASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRLVQI 179
Query: 128 QARDPDSDHNIHYFI----VRDRTGGRFEVDERSGVVRTRGTDPFQLDQE----YVLYVK 179
++ + D + ++Y I + G F ++ +G + LD+E YVL
Sbjct: 180 KS-NKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRP----LDREEYDKYVLSSH 234
Query: 180 AEDQNGRKDERKFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDTEYPSMTGTATV 239
A +NG + +
Sbjct: 235 AVSENG---------------------------------------------SPVEEPMEI 249
Query: 240 RIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKD----GDNVSIISVKAKSF 295
I ++ND PKF+Q V+ +V E P T V V A+D+D N
Sbjct: 250 TINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLN----------- 298
Query: 296 ADREIRYTLKAQ---GQGAGTFNIGPTSGIVKLAKE-LDFEDLRQPHVYSLIVTAT-EDS 350
+ Y++ Q F I +G++ L LD E + Y+L V AT +
Sbjct: 299 --GVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPE---YTLTVQATDLEG 353
Query: 351 GGFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSGTNAEIE 410
G S + I++TD NDNAP F+ Y A + E+ G + ++ TD D +
Sbjct: 354 AGLSVEGKAIIQITDANDNAPIFDPKTYTAL-VPEN-EIGFEVQRLSVTDLDMPGTPAWQ 411
Query: 411 YHVS-----DDNFAVDSN-----GVINNHKTLDADNNNAYYEFVITAKDKDVD------- 453
F + ++ G++ K LD + Y IT ++ +
Sbjct: 412 AVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYV-LQITVENAEPFSVPLPTS 470
Query: 454 ---VELDVVDRNNKPPLWDNAIYGPIHIRENVTVSTVVTSVKA---------RFGFVGGS 501
V + V D N P + A+ + + E+++ + S+ A + + G+
Sbjct: 471 TATVTVTVEDVNE-APFFVPAVS-RVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGN 528
Query: 502 TSSGQFVIEDITGVIRLNSKSISLDR-------DKYELNVTAVDDGACCANGDQSVHTAT 554
+ + G++ N +LDR + Y + + DDG SV T T
Sbjct: 529 DPARWLTVNKDNGIVTGNG---NLDRESEYVKNNTYTVIMLVTDDG-------VSVGTGT 578
Query: 555 AVVVVFITDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGVNG-QVKYSIVQ 613
+++ + DVNDN PV P+V + +D D N K S+
Sbjct: 579 GTLILHVLDVNDNGPVP------SPRVFTMCDQNPEPQVLTISDADIPPNTYPYKVSLSH 632
Query: 614 QPNQKGAKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEGVCSFTVEITD 673
+ + G + + G + S+ + +D V +
Sbjct: 633 GSDLTW--KAELDSKGTSMLLSPTQQL-KKGDY-SIYVLLSDAQNNPQLTVV--NATVCS 686
Query: 674 VNDNPPLFDRQKY 686
+
Sbjct: 687 CEGKAIKCQEKLV 699
Score = 255 bits (654), Expect = 4e-73
Identities = 109/506 (21%), Positives = 176/506 (34%), Gaps = 105/506 (20%)
Query: 350 SGGFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSGTNAEI 409
G + DV+ P F +Y ++ G + KV +D + +
Sbjct: 14 CGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTTRKH--G 71
Query: 410 EYHVSDDNFAVDSNGVINNHKTLDADNNNAY-------------YEFVITAKDKDVD--- 453
Y V D F V +G + + + + + + +K
Sbjct: 72 LYDVGDSRFRVLPDGTVLVKRHVKLHKDTKFTISTWDARGIKHSTNIAVASKRHRSGEEA 131
Query: 454 ----VELDVVDRN-NKPPLWDNA---IYGPIHIRENVTVS--TVVTSVKARFGFVG---- 499
+L V+ L + PI + EN + +K+
Sbjct: 132 HSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSENERGPFPKRLVQIKSNKDRFNKVYY 191
Query: 500 -------GSTSSGQFVIEDITGVIRLNSKSISLDR---DKYELNVTAVDDGACCANGDQS 549
+ G F IE TG + + LDR DKY L+ AV + S
Sbjct: 192 SITGQGADNPPQGVFRIEWETGWMLVTR---PLDREEYDKYVLSSHAVSEN-------GS 241
Query: 550 VHTATAVVVVFITDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDED---KGVNGQ 606
+ + + D NDN+P F + + V EG G+ V+ V ATDED +NG
Sbjct: 242 PVEEPMEITINVIDQNDNRPKFTQ-DVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGV 300
Query: 607 VKYSIVQQ-PNQKGAK-FTVDEETGEVVTNKVF-DREGDDGKFVSVTIKATDQGEPSLEG 663
+ YSI++Q P + FT++ ETG + DRE ++T++ATD L
Sbjct: 301 LSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDRE--KFPEYTLTVQATDLEGAGLSV 358
Query: 664 VCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDADNNGA--IVYTLS 721
++ITD NDN P+FD + Y V ++ IG + R+S +D D A VY +
Sbjct: 359 EGKAIIQITDANDNAPIFDPKTYTALVPENE-IGFEVQRLSVTDLDMPGTPAWQAVYKIR 417
Query: 722 APYNQMDLEYFEIQPES----GWIVLKKPLDVYYYIVDSPRNEGKDFFEINLQSGEVFTK 777
+F I + G + K L
Sbjct: 418 VNEG----GFFNITTDPESNQGILTTAKGL------------------------------ 443
Query: 778 VVFDREKQGAYALEVEARDGAPSARP 803
D E + Y L++ + P + P
Sbjct: 444 ---DFELRKQYVLQITVENAEPFSVP 466
Score = 242 bits (620), Expect = 1e-68
Identities = 104/569 (18%), Positives = 185/569 (32%), Gaps = 84/569 (14%)
Query: 231 PSMTGTATVRIYTKNKNDEEPKFSQQVYTPNVDE-NAGPNTLVTTVVASDKDGDNVSIIS 289
+ V + + +P FS Y +V+ + V SD +
Sbjct: 15 GLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTTRKHGLYD 74
Query: 290 VKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATED 349
V + R+ + G ++ D H ++ V +
Sbjct: 75 V-------GDSRFRVLPDGTVLVKRHVKLHKDTKFTISTWD--ARGIKHSTNIAVASKRH 125
Query: 350 SGG---FSTSVELTIRVTDVNDNAPKFELPDYQAH--NIDEDITTGTSILKVKATDADSG 404
G S S +L + K + D+ + E+ G ++ ++
Sbjct: 126 RSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVIPPIKVSEN-ERGPFPKRLVQIKSNKD 184
Query: 405 TNAEIEYHVSDDN--------FAVDSN-GVINNHKTLDADNNNAYYEFVITAKDKD---- 451
++ Y ++ F ++ G + + LD + Y A ++
Sbjct: 185 RFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEY-DKYVLSSHAVSENGSPV 243
Query: 452 ---VDVELDVVDRNNKPPLWDNAIYGPIHIRENVTVSTVVTSVKA--------------R 494
+++ ++V+D+N+ P + ++ +RE V T V +V A
Sbjct: 244 EEPMEITINVIDQNDNRPKFTQDVF-RGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLS 302
Query: 495 FGFVGG---STSSGQFVIEDITGVIRLNSKSISLDR---DKYELNVTAVDDGACCANGDQ 548
+ + F I TGVI L LDR +Y L V A D +
Sbjct: 303 YSILKQDPEEPIPNLFTINRETGVISLIGTG--LDREKFPEYTLTVQATD-------LEG 353
Query: 549 SVHTATAVVVVFITDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGVNG--Q 606
+ + ++ ITD NDN P+F TY V E G V ++ TD D Q
Sbjct: 354 AGLSVEGKAIIQITDANDNAPIFDP-KTYTALVPENEI-GFEVQRLSVTDLDMPGTPAWQ 411
Query: 607 VKYSIVQQPNQKGAKFTV----DEETGEVVTNKVFDREGDDGKFVSVTIKATDQ---GEP 659
Y I F + + G + T K D E K + I + P
Sbjct: 412 AVYKIRVNEGGF---FNITTDPESNQGILTTAKGLDFE--LRKQYVLQITVENAEPFSVP 466
Query: 660 SLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDADNNGAIVYT 719
+ TV + DVN+ P F +V +D S G I+ + A D D + Y
Sbjct: 467 LPTSTATVTVTVEDVNE-APFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYF 525
Query: 720 LSAPYNQMDLEYFEIQPESGWIVLKKPLD 748
+ + + + ++G + LD
Sbjct: 526 IGNDPAR----WLTVNKDNGIVTGNGNLD 550
Score = 212 bits (542), Expect = 4e-58
Identities = 100/535 (18%), Positives = 170/535 (31%), Gaps = 119/535 (22%)
Query: 89 VIIHVKDVNDESPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDSDHN-----IHYFIV 143
+ I+V D ND P F + V+ P T V + A D D + + + Y I+
Sbjct: 249 ITINVIDQNDNRPKFTQDVF--RGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSIL 306
Query: 144 R----DRTGGRFEVDERSGVVRTRGTDPFQLDQE----YVLYVKAEDQNGRKDERKFQST 195
+ + F ++ +GV+ GT LD+E Y L V+A D G
Sbjct: 307 KQDPEEPIPNLFTINRETGVISLIGTG---LDREKFPEYTLTVQATDLEG---------- 353
Query: 196 PEERLSIVGGKRAPQFYMPSYEAEIPENQKKDTEYPSMTGTATVRIYTKNKNDEEPKFSQ 255
++ I + ND P F
Sbjct: 354 -----------------------------------AGLSVEGKAIIQITDANDNAPIFDP 378
Query: 256 QVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGAGTFN 315
+ YT V EN V + +D D + Y + + G FN
Sbjct: 379 KTYTALVPENE-IGFEVQRLSVTDLDMPGT----------PAWQAVYKI--RVNEGGFFN 425
Query: 316 IGP----TSGIVKLAKELDFEDLRQPHVYSLIVTATED----SGGFSTSVELTIRVTDVN 367
I GI+ AK LDFE +Q Y L +T +++ +T+ V DVN
Sbjct: 426 ITTDPESNQGILTTAKGLDFELRKQ---YVLQITVENAEPFSVPLPTSTATVTVTVEDVN 482
Query: 368 DNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSGTNAEIEYHVSDDN---FAVDS-N 423
+ P F + + ED++ G I+ + A D D ++ Y + +D V+ N
Sbjct: 483 EA-PFFVPAVSRVD-VSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDN 540
Query: 424 GVINNHKTLD---ADNNNAYYEFVITAKDKD-------VDVELDVVDRNNKPPLWDNAIY 473
G++ + LD N Y ++ D + L V+D N+ P+ ++
Sbjct: 541 GIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVF 600
Query: 474 GPIHIRENVTVSTVVT-----SVKARFGF-VGGSTSSGQFVIEDITGVIRLNSKSISLDR 527
+ + ++ + + + D G L S + L +
Sbjct: 601 -TMCDQNPEPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKK 659
Query: 528 DKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKPVFRECSTYYPKVE 582
Y + V D VV + +E +
Sbjct: 660 GDYSIYVLLSDAQNN---------PQLTVVNATVCSCEGKAIKCQEKLVGGFDLP 705
Score = 114 bits (288), Expect = 2e-26
Identities = 59/388 (15%), Positives = 114/388 (29%), Gaps = 68/388 (17%)
Query: 82 VHTDNQRVIIHVKDVNDESPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDSDHN--IH 139
+ T V + V+DVN+ +P+F P + V + + +L A+DPD +
Sbjct: 467 LPTSTATVTVTVEDVNE-APFF--VPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLS 523
Query: 140 YFIVRDRTGGRFEVDERSGVVRTRGTDPFQLDQEYVLYVKAEDQNGRKDERKFQSTPEER 199
YFI D V++ +G+V G LD+E
Sbjct: 524 YFIGND-PARWLTVNKDNGIVTGNGN----LDRE-------------------------- 552
Query: 200 LSIVGGKRAPQFYMPSYEAEIPENQKKDTEYPSMTGTATVRIYTKNKNDEEPKFSQQVYT 259
+ +Y + D TGT T+ ++ + ND P S +V+T
Sbjct: 553 --------SEYVKNNTYTVIM---LVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFT 601
Query: 260 PNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGAGTFNIGPT 319
+ SD D + +L +
Sbjct: 602 MCDQNPE-----PQVLTISDADIP----------PNTYP-YKVSLSHGSDLTWKA-ELDS 644
Query: 320 SGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVELTIRVTDVNDNAPKFELPDYQ 379
G L YS+ V + D+ + V A K +
Sbjct: 645 KGTSMLLSPTQQLK---KGDYSIYVLLS-DAQNNPQLTVVNATVCSCEGKAIKCQEKLVG 700
Query: 380 AHNIDEDITTGTSILKVKATDADSGTNAEIEYHVSDDNFAVDSNGVINNHKTLDADNNNA 439
++ + S+L + + + V + + + N +
Sbjct: 701 GFDLPIILVILGSVLALLILFLLLLLFLKRKKVVKEPLLLPEDDTRDNIFYYGEEGGGEE 760
Query: 440 YYEFVITAKDKDVDVELDVVDRNNKPPL 467
++ ++ + +D D++ + P L
Sbjct: 761 DQDYDLSQLHRGLDSRPDIMRNDVVPTL 788
Score = 67.2 bits (164), Expect = 2e-11
Identities = 24/155 (15%), Positives = 49/155 (31%), Gaps = 32/155 (20%)
Query: 653 ATDQGEPSLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQDAS-IGTNILRVSASDEDAD 711
A+ L + DV+ P F +Y+ +V + G + +V+ S D
Sbjct: 9 ASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFS--DCT 66
Query: 712 NNGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLDVYYYIVDSPRNEGKDFFEINLQS 771
+Y + F + P G +++K+ + L
Sbjct: 67 TRKHGLYDVGDS-------RFRVLP-DGTVLVKRHVK--------------------LHK 98
Query: 772 GEVFTKVVFD-REKQGAYALEVEARDGAPSARPNS 805
FT +D R + + + V ++ +S
Sbjct: 99 DTKFTISTWDARGIKHSTNIAVASKRHRSGEEAHS 133
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 271 bits (696), Expect = 1e-81
Identities = 120/627 (19%), Positives = 201/627 (32%), Gaps = 144/627 (22%)
Query: 120 PNTPVFTLQARDPDSDHN--IHYFIVRDRTG----GRFEVDERSGVVRTRGTDPFQLDQE 173
L D D N + Y + G F ++ SG + LD+E
Sbjct: 14 RGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP----LDRE 69
Query: 174 ----YVLYVKAEDQNGRKDERKFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDTE 229
+ L A D NG
Sbjct: 70 LIARFHLRAHAVDING-------------------------------------------- 85
Query: 230 YPSMTGTATVRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIIS 289
+ + I + ND P+F QV+ +V E + P T V TV A D D
Sbjct: 86 -NQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDAD-------- 136
Query: 290 VKAKSFADREIRYTLKAQ---GQGAGTFNIGPTSG-IVKLAKELDFEDLRQPHVYSLIVT 345
+ + +RY + +Q F I +G I+ +A LD E ++Q Y+LI+
Sbjct: 137 --DPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQ---YTLIIQ 191
Query: 346 AT----EDSGGFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDA 401
AT + G S + I VTDVNDN P+F + + E+ + + TD
Sbjct: 192 ATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGE-VPEN-RVDVIVANLTVTDK 249
Query: 402 DSGTNAEIEYHVS------DDNFAVDSN-----GVINNHKTLDADNNNAYYEFVITAKDK 450
D FA+ ++ G++ K +D + N + + A+++
Sbjct: 250 DQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFETNRMFV-LTVAAENQ 308
Query: 451 DVD-------------VELDVVDRNNKPPLWDNAIYGPIHIRENVTVSTVVTSVKA---- 493
V + V+D N P + I E + T++T++ A
Sbjct: 309 VPLAKGIQHPPQSTATVSVTVIDVNE-NPYFAPNPK-IIRQEEGLHAGTMLTTLTAQDPD 366
Query: 494 -----RFGFVGGSTSSGQFVIEDITGVIRLNSKSISLDR-------DKYELNVTAVDDGA 541
+ S + I+ + G I + LDR + Y A D+G
Sbjct: 367 RYMQQNIRYTKLSDPANWLKIDPVNGQITTIA---VLDRESPNVKNNIYNATFLASDNG- 422
Query: 542 CCANGDQSVHTATAVVVVFITDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDK 601
+ T + +++ D+NDN P + E I + A D D
Sbjct: 423 ------IPPMSGTGTLQIYLLDINDNAPQV---LPQEAETCETPEPN--SINITALDYDI 471
Query: 602 GVNG-QVKYSIVQQPNQKGAKFTVDEETGEVVT-NKVFDREGDDGKFVSVTIKATDQGEP 659
N + + P +T++ G+ N + V I TD G P
Sbjct: 472 DPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFL--EAGIYEVPIIITDSGNP 529
Query: 660 SLEGVCSFTVEITDVNDNPPLFDRQKY 686
+ V++ + N D +
Sbjct: 530 PKSNISILRVKVCQCDSNGDCTDVHHH 556
Score = 266 bits (682), Expect = 8e-80
Identities = 127/591 (21%), Positives = 210/591 (35%), Gaps = 119/591 (20%)
Query: 261 NVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQG---AGTFNIG 317
N+ EN+ +V D D + +RY++ G G F I
Sbjct: 8 NLPENS-RGPFPQELVRIRSDRDK------------NLSLRYSVTGPGADQPPTGIFIIN 54
Query: 318 PTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGF--STSVELTIRVTDVNDNAPKFEL 375
P SG + + K LD E + L A D G +++ I V D+NDN P+F
Sbjct: 55 PISGQLSVTKPLDRE--LIAR-FHLRAHAV-DINGNQVENPIDIVINVIDMNDNRPEFLH 110
Query: 376 PDYQAHNIDEDITTGTSILKVKATDAD--SGTNAEIEY--------HVSDDNFAVDSN-G 424
+ ++ E GT ++ V A DAD + N + Y S + F +++ G
Sbjct: 111 QVWNG-SVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETG 169
Query: 425 VINN-HKTLDADNNNAYYEFVITAKDKD----------VDVELDVVDRNNKPPLWDNAIY 473
I LD + Y +I A D + + V D N+ PP + +
Sbjct: 170 DIITVAAGLDREKVQ-QYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTF 228
Query: 474 GPIHIRENVTVSTVVTSVKAR-------------FGFVGGSTSSGQFVIE----DITGVI 516
+ EN V +V ++ + GG +G+F I G++
Sbjct: 229 Y-GEVPEN-RVDVIVANLTVTDKDQPHTPAWNAAYRISGGDP-TGRFAILTDPNSNDGLV 285
Query: 517 RLNSKSISLDR---DKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKPVFRE 573
+ +D + L V A + A G Q +TA V V + DVN+N P F
Sbjct: 286 TVVK---PIDFETNRMFVLTVAAENQVP-LAKGIQHPPQSTATVSVTVIDVNEN-PYFAP 340
Query: 574 CSTYYPKVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVT 633
+ + EEG G+ + + A D D+ + ++Y+ + P +D G++ T
Sbjct: 341 -NPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPAN---WLKIDPVNGQITT 396
Query: 634 NKVFDREGDDGKFVS--VTIKATDQGEPSLEGVCSFTVEITDVNDNPPLFDRQKYVENVK 691
V DRE + K T A+D G P + G + + + D+NDN P
Sbjct: 397 IAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVL--PQEAETC 454
Query: 692 QDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLDVYY 751
+ N + ++A D D D N F++
Sbjct: 455 ETP--EPNSINITALDYDIDPNAGPF-------------AFDLPLSPV------------ 487
Query: 752 YIVDSPRNEGKDFFEINLQSGEVFT-KVVFDREKQGAYALEVEARD-GAPS 800
K + IN +G+ + + G Y + + D G P
Sbjct: 488 --------TIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIITDSGNPP 530
Score = 224 bits (572), Expect = 3e-64
Identities = 103/543 (18%), Positives = 177/543 (32%), Gaps = 132/543 (24%)
Query: 89 VIIHVKDVNDESPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDSDHN----IHYFIV- 143
++I+V D+ND P F+++ V + P T V T+ A D D + + Y I+
Sbjct: 94 IVINVIDMNDNRPEFLHQV--WNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILS 151
Query: 144 ---RDRTGGRFEVDERSGVVRTRGTDPFQLDQE----YVLYVKAEDQNGRKDERKFQSTP 196
+ F ++ +G + T LD+E Y L ++A D G
Sbjct: 152 QAPSTPSPNMFTINNETGDIITVAA---GLDREKVQQYTLIIQATDMEGNPT-------- 200
Query: 197 EERLSIVGGKRAPQFYMPSYEAEIPENQKKDTEYPSMTGTATVRIYTKNKNDEEPKFSQQ 256
++ TAT I + ND P+F+
Sbjct: 201 ----------------------------------YGLSNTATAVITVTDVNDNPPEFTAM 226
Query: 257 VYTPNVDENAGPNTLVTTVVASDKD-GDNVSIISVKAKSFADREIRYTLKAQGQGAGTFN 315
+ V EN + +V + +DKD Y + + G G F
Sbjct: 227 TFYGEVPENR-VDVIVANLTVTDKDQPHT-----------PAWNAAYRI-SGGDPTGRFA 273
Query: 316 IGPTS----GIVKLAKELDFEDLRQPHVYSLIVTAT-------EDSGGFSTSVELTIRVT 364
I G+V + K +DFE R + L V A ++ +++ V
Sbjct: 274 ILTDPNSNDGLVTVVKPIDFETNRM---FVLTVAAENQVPLAKGIQHPPQSTATVSVTVI 330
Query: 365 DVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSGTNAEIEYHVSDDN---FAVD 421
DVN+N P F +E + GT + + A D D I Y D +D
Sbjct: 331 DVNEN-PYFAPNPKIIR-QEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPANWLKID 388
Query: 422 S-NGVINNHKTLD---ADNNNAYYEFVITAKDKD-------VDVELDVVDRNNKPPLWDN 470
NG I LD + N Y A D +++ ++D N DN
Sbjct: 389 PVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDIN------DN 442
Query: 471 A---IYGPIHIRENVTVSTVVTSVK--------ARFGF---VGGSTSSGQFVIEDITGVI 516
A + E +++ + F F + T + I + G
Sbjct: 443 APQVLPQEAETCETPEPNSINITALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDF 502
Query: 517 RLNSKSIS-LDRDKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKPVFRECS 575
+ I L+ YE+ + D G + +++ V + + N +
Sbjct: 503 AQLNLKIKFLEAGIYEVPIIITDSG-------NPPKSNISILRVKVCQCDSNGDCT-DVH 554
Query: 576 TYY 578
++
Sbjct: 555 HHH 557
Score = 206 bits (525), Expect = 1e-57
Identities = 98/470 (20%), Positives = 164/470 (34%), Gaps = 101/470 (21%)
Query: 382 NIDEDITTGTSILKVKATDADSGTNAEIEYHVSDDN--------FAVDSN-GVINNHKTL 432
N+ E+ + G ++ +D N + Y V+ F ++ G ++ K L
Sbjct: 8 NLPEN-SRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 66
Query: 433 DADNNNAYYEFVITAKDKD-------VDVELDVVDRNNKPPLWDNAIYGPIHIRENVTVS 485
D + A + A D + +D+ ++V+D N+ P + + ++ + E
Sbjct: 67 DRELI-ARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVW-NGSVPEGSKPG 124
Query: 486 TVVTSVKA-------------RFGFVGG---STSSGQFVIEDITGVIRLNSKSISLDR-- 527
T V +V A R+ + + S F I + TG I + LDR
Sbjct: 125 TYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAG--LDREK 182
Query: 528 -DKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKPVFRECSTYYPKVEEGAP 586
+Y L + A D G + TA V+ +TDVNDN P F T+Y +V E
Sbjct: 183 VQQYTLIIQATDMEGNPTYG----LSNTATAVITVTDVNDNPPEFTA-MTFYGEVPENRV 237
Query: 587 NGSPVIKVHATDEDKGVNG--QVKYSIVQQPNQKGAKFTVDEETGE--VVTNKVFDREGD 642
V + TD+D+ Y I D + + V K D E
Sbjct: 238 -DVIVANLTVTDKDQPHTPAWNAAYRISGGDPTGRFAILTDPNSNDGLVTVVKPIDFE-- 294
Query: 643 DGKFVSVTIKATDQGE------PSLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQDASI 696
+ +T+ A +Q + + +V + DVN+NP F + ++
Sbjct: 295 TNRMFVLTVAAENQVPLAKGIQHPPQSTATVSVTVIDVNENPY-FAPNPKIIRQEEGLHA 353
Query: 697 GTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLDVYYYIVDS 756
GT + ++A D D I YT + + W
Sbjct: 354 GTMLTTLTAQDPDRYMQQNIRYTK-------------LSDPANW---------------- 384
Query: 757 PRNEGKDFFEINLQSGEVFTKVVFDRE----KQGAYALEVEARD-GAPSA 801
+I+ +G++ T V DRE K Y A D G P
Sbjct: 385 --------LKIDPVNGQITTIAVLDRESPNVKNNIYNATFLASDNGIPPM 426
Score = 188 bits (480), Expect = 1e-51
Identities = 80/356 (22%), Positives = 135/356 (37%), Gaps = 76/356 (21%)
Query: 475 PIHIRENVTVSTVVTSVKAR-------------FGFVGGSTSSGQFVIEDITGVIRLNSK 521
PI++ EN V+ R G +G F+I I+G + +
Sbjct: 6 PINLPENSRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTK- 64
Query: 522 SISLDR---DKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKPVFRECSTYY 578
LDR ++ L AVD + + +V+ + D+NDN+P F +
Sbjct: 65 --PLDRELIARFHLRAHAVD-------INGNQVENPIDIVINVIDMNDNRPEFLH-QVWN 114
Query: 579 PKVEEGAPNGSPVIKVHATDED--KGVNGQVKYSIVQQ-PNQKGAK-FTVDEETGEVVT- 633
V EG+ G+ V+ V A D D +NG ++Y I+ Q P+ FT++ ETG+++T
Sbjct: 115 GSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITV 174
Query: 634 NKVFDREGDDGKFVSVTIKATDQGEP---SLEGVCSFTVEITDVNDNPPLFDRQKYVENV 690
DRE + ++ I+ATD L + + +TDVNDNPP F + V
Sbjct: 175 AAGLDRE--KVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEV 232
Query: 691 KQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQPES----GWIVLKKP 746
++ + + ++ +D+D + A F I + G + + KP
Sbjct: 233 PENR-VDVIVANLTVTDKDQPHTPAWNAAYRISGGDPT-GRFAILTDPNSNDGLVTVVKP 290
Query: 747 LDVYYYIVDSPRNEGKDFFEINLQSGEVFTKVVFDREKQGAYALEVEARDGAPSAR 802
+ D E + L V A + P A+
Sbjct: 291 I---------------------------------DFETNRMFVLTVAAENQVPLAK 313
Score = 135 bits (341), Expect = 2e-33
Identities = 47/228 (20%), Positives = 85/228 (37%), Gaps = 40/228 (17%)
Query: 581 VEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAK--FTVDEETGEVVTNKVFD 638
+ E + P ++ D+ N ++YS+ + F ++ +G++ K D
Sbjct: 9 LPENSRGPFPQ-ELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLD 67
Query: 639 REGDDGKFVSVTIKATDQGEPSLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGT 698
RE + A D +E + + D+NDN P F Q + +V + + GT
Sbjct: 68 RELIA--RFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGT 125
Query: 699 NILRVSASDEDADN--NGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLDVYYYIVDS 756
++ V+A D D N NG + Y + + +
Sbjct: 126 YVMTVTAIDADDPNALNGMLRYRILSQ--------------------------------A 153
Query: 757 PRNEGKDFFEINLQSGEVFT-KVVFDREKQGAYALEVEARDGAPSARP 803
P + F IN ++G++ T DREK Y L ++A D +
Sbjct: 154 PSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTY 201
Score = 129 bits (326), Expect = 1e-31
Identities = 64/305 (20%), Positives = 101/305 (33%), Gaps = 70/305 (22%)
Query: 83 HTDNQRVIIHVKDVNDESPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDSDHN--IHY 140
V + V DVN+ +PYF P P + T + TL A+DPD I Y
Sbjct: 319 PQSTATVSVTVIDVNE-NPYF--APNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRY 375
Query: 141 FIVRDRTGGRFEVDERSGVVRTRGTDPFQLDQEYVLYVKAEDQNGRKDERKFQSTPEERL 200
+ D ++D +G + T LD+E
Sbjct: 376 TKLSDP-ANWLKIDPVNGQITTIAV----LDRE--------------------------- 403
Query: 201 SIVGGKRAPQFYMPSYEAEIPENQKKDTEYPSMTGTATVRIYTKNKNDEEPKFSQQVYTP 260
+P Y A D P M+GT T++IY + ND P+ Q
Sbjct: 404 -------SPNVKNNIYNATF---LASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQEAE- 452
Query: 261 NVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLK-AQGQGAGTFNIGPT 319
E PN++ + A D D D A + L + + I
Sbjct: 453 -TCETPEPNSIN--ITALDYDID----------PNAGP-FAFDLPLSPVTIKRNWTINRL 498
Query: 320 SG-IVKLAKELDFEDLRQPHVYSLIVTATEDSGGF--STSVELTIRVTDVNDNAPKFELP 376
+G +L ++ F + Y + + T DSG S L ++V + N ++
Sbjct: 499 NGDFAQLNLKIKFLEAGI---YEVPIIIT-DSGNPPKSNISILRVKVCQCDSNGDCTDVH 554
Query: 377 DYQAH 381
+ H
Sbjct: 555 HHHHH 559
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 268 bits (688), Expect = 1e-80
Identities = 117/623 (18%), Positives = 205/623 (32%), Gaps = 140/623 (22%)
Query: 120 PNTPVFTLQARDPDSDHN--IHYFI----VRDRTGGRFEVDERSGVVRTRGTDPFQLDQE 173
L + D + Y I G F ++ +G ++ LD+E
Sbjct: 14 KGEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP----LDRE 69
Query: 174 ----YVLYVKAEDQNGRKDERKFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDTE 229
Y+LY A NG
Sbjct: 70 AIAKYILYSHAVSSNG-------------------------------------------- 85
Query: 230 YPSMTGTATVRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIIS 289
++ + I ++ND P+F+Q+V+ +V E A P T V V A+D D D + +
Sbjct: 86 -EAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNA 144
Query: 290 VKAKSFADREIRYTLKAQ---GQGAGTFNIGPTSGIVKLAKE-LDFEDLRQPHVYSLIVT 345
I YT+ +Q F + +G++ + LD E Y+L+V
Sbjct: 145 ---------AIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPT---YTLVVQ 192
Query: 346 AT-EDSGGFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSG 404
A G ST+ + I V D+NDNAP F YQ + E+ I +K TD D+
Sbjct: 193 AADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQ-VPEN-EVNARIATLKVTDDDAP 250
Query: 405 TNAEIEYHVS-----DDNFAVDSN-----GVINNHKTLDADNNNAYYEFVITAKDKDVD- 453
+ + D F V ++ G++ K LD + Y + ++++
Sbjct: 251 NTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFEAKQQYI-LHVRVENEEPFE 309
Query: 454 ---------VELDVVDRNNKPPLWDNAIYGPIHIRENVTVSTVVTSVKA---------RF 495
V +DVVD N P++ A + + E+ V +TS A +
Sbjct: 310 GSLVPSTATVTVDVVDVNE-APIFMPAERR-VEVPEDFGVGQEITSYTAREPDTFMDQKI 367
Query: 496 GFVGGSTSSGQFVIEDITGVIRLNSKSISLDR--------DKYELNVTAVDDGACCANGD 547
+ ++ I TG I + +DR Y + A DDG
Sbjct: 368 TYRIWRDTANWLEINPETGAIFTRA---EMDREDAEHVKNSTYVALIIATDDG------- 417
Query: 548 QSVHTATAVVVVFITDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGVNGQ- 606
+ T T +++ + DVNDN P+ P+ + + D D N
Sbjct: 418 SPIATGTGTLLLVLLDVNDNAPIP------EPRNMQFCQRNPQPHIITILDPDLPPNTSP 471
Query: 607 VKYSIVQQPNQKGAKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEGVCS 666
+ + ++ E + + + G++ + +K D
Sbjct: 472 FTAELTHGASVNW-TIEYNDAAQESLILQPRKDL-EIGEY-KIHLKLADNQNKDQVTTL- 527
Query: 667 FTVEITDVNDNPPLFDRQKYVEN 689
V + D + + +
Sbjct: 528 -DVHVCDCEGTVNNCMKAHHHHH 549
Score = 261 bits (669), Expect = 5e-78
Identities = 124/587 (21%), Positives = 206/587 (35%), Gaps = 119/587 (20%)
Query: 261 NVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQG---AGTFNIG 317
+ EN +V + D + ++ Y++ QG G F I
Sbjct: 8 SCPENE-KGEFPKNLVQIKSNRDK------------ETKVFYSITGQGADKPPVGVFIIE 54
Query: 318 PTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGF--STSVELTIRVTDVNDNAPKFEL 375
+G +K+ + LD E Y L A S G +E+ I VTD NDN P+F
Sbjct: 55 RETGWLKVTQPLDRE---AIAKYILYSHAV-SSNGEAVEDPMEIVITVTDQNDNRPEFTQ 110
Query: 376 PDYQAHNIDEDITTGTSILKVKATDADSGT---NAEIEY--------HVSDDNFAVDSN- 423
++ ++ E GTS++KV ATDAD NA I Y + F V+ +
Sbjct: 111 EVFEG-SVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDT 169
Query: 424 GVIN-NHKTLDADNNNAYYEFVITAKDKD-------VDVELDVVDRNNKPPLWDNAIYGP 475
GVI+ LD ++ Y V+ A D + V D N+ P+++ + Y
Sbjct: 170 GVISVLTSGLDRESYP-TYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQ- 227
Query: 476 IHIRENVTVSTVVTSVKA-----------RFGFVGGSTSSGQFVIE----DITGVIRLNS 520
+ EN V+ + ++K + + + QFV+ G+++
Sbjct: 228 GQVPEN-EVNARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAK 286
Query: 521 KSISLDR---DKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKPVFRECSTY 577
LD +Y L+V ++ + S+ +TA V V + DVN+ P+F +
Sbjct: 287 ---GLDFEAKQQYILHVRVENEEPF----EGSLVPSTATVTVDVVDVNEA-PIFMP-AER 337
Query: 578 YPKVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTNKVF 637
+V E G + A + D ++ ++ Y I + ++ ETG + T
Sbjct: 338 RVEVPEDFGVGQEITSYTAREPDTFMDQKITYRIWRDTANW---LEINPETGAIFTRAEM 394
Query: 638 DREGDDGKFVS---VTIKATDQGEPSLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQDA 694
DRE + S I ATD G P G + + + DVNDN P+ + Q
Sbjct: 395 DREDAEHVKNSTYVALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPE--PRNMQFCQRN 452
Query: 695 SIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLDVYYYIV 754
I + D D N + E+
Sbjct: 453 PQPHII---TILDPDLPPNTSPFT-------------AELTHG----------------- 479
Query: 755 DSPRNEGKDFFEINLQSGEVFTKVVFDREKQGAYALEVEARD-GAPS 800
E N + E + G Y + ++ D
Sbjct: 480 ----ASVNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKLADNQNKD 522
Score = 224 bits (572), Expect = 2e-64
Identities = 106/540 (19%), Positives = 174/540 (32%), Gaps = 134/540 (24%)
Query: 88 RVIIHVKDVNDESPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDSDHN-----IHYFI 142
++I V D ND P F + V A P T V + A D D D N I Y I
Sbjct: 93 EIVITVTDQNDNRPEFTQEVF--EGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTI 150
Query: 143 VR----DRTGGRFEVDERSGVVRTRGTDPFQLDQE----YVLYVKAEDQNGRKDERKFQS 194
V F V+ +GV+ + LD+E Y L V+A D G
Sbjct: 151 VSQDPELPHKNMFTVNRDTGVISVLTS---GLDRESYPTYTLVVQAADLQG--------- 198
Query: 195 TPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDTEYPSMTGTATVRIYTKNKNDEEPKFS 254
++ TA I K+ ND P F+
Sbjct: 199 ------------------------------------EGLSTTAKAVITVKDINDNAPVFN 222
Query: 255 QQVYTPNVDENAGPNTLVTTVVASDKD-GDNVSIISVKAKSFADREIRYTLKAQGQGAGT 313
Y V EN N + T+ +D D + + YT+
Sbjct: 223 PSTYQGQVPENE-VNARIATLKVTDDDAPNT-----------PAWKAVYTV--VNDPDQQ 268
Query: 314 FNIGPTS----GIVKLAKELDFEDLRQPHVYSLIVTAT----EDSGGFSTSVELTIRVTD 365
F + GI+K AK LDFE +Q Y L V + ++ +T+ V D
Sbjct: 269 FVVVTDPTTNDGILKTAKGLDFEAKQQ---YILHVRVENEEPFEGSLVPSTATVTVDVVD 325
Query: 366 VNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSGTNAEIEYHVSDDN---FAVDS 422
VN+ AP F + + + ED G I A + D+ + +I Y + D ++
Sbjct: 326 VNE-APIFMPAERRVE-VPEDFGVGQEITSYTAREPDTFMDQKITYRIWRDTANWLEINP 383
Query: 423 -NGVINNHKTLD----ADNNNAYYEFVITAKDKD-------VDVELDVVDRNNKPPLWDN 470
G I +D N+ Y +I A D + L ++D N DN
Sbjct: 384 ETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGSPIATGTGTLLLVLLDVN------DN 437
Query: 471 A---IYGPIHIRENVTVSTVVTSVKA---------RFGFVGGSTSSGQFVIEDITGVIRL 518
A + + ++T + G++ + D +
Sbjct: 438 APIPEPRNMQFCQRNPQPHIITILDPDLPPNTSPFTAELTHGASVNWTIEYNDAAQESLI 497
Query: 519 NSKSISLDRDKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKPVFRECSTYY 578
L+ +Y++++ D N ++ + V + D + + ++
Sbjct: 498 LQPRKDLEIGEYKIHLKLAD------NQNKD---QVTTLDVHVCDCEGTVNNCMK-AHHH 547
Score = 203 bits (518), Expect = 9e-57
Identities = 95/468 (20%), Positives = 163/468 (34%), Gaps = 102/468 (21%)
Query: 382 NIDEDITTGTSILKVKATDADSGTNAEIEYHVSDDN--------FAVDSN-GVINNHKTL 432
+ E+ G + ++ ++ Y ++ F ++ G + + L
Sbjct: 8 SCPEN-EKGEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPL 66
Query: 433 DADNNNAYYEFVITAKDKD-------VDVELDVVDRNNKPPLWDNAIYGPIHIRENVTVS 485
D + A Y A + +++ + V D+N+ P + ++ + E
Sbjct: 67 DREAI-AKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVF-EGSVAEGAVPG 124
Query: 486 TVVTSVKA--------------RFGFVGG---STSSGQFVIEDITGVIRLNSKSISLDR- 527
T V V A + V F + TGVI + + LDR
Sbjct: 125 TSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSG--LDRE 182
Query: 528 --DKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKPVFRECSTYYPKVEEGA 585
Y L V A D + TA V+ + D+NDN PVF STY +V E
Sbjct: 183 SYPTYTLVVQAAD-------LQGEGLSTTAKAVITVKDINDNAPVFNP-STYQGQVPENE 234
Query: 586 PNGSPVIKVHATDEDKGVNGQVK--YSIVQQPNQKGAKFT-VDEETGEVVTNKVFDREGD 642
+ + + TD+D K Y++V P+Q+ T G + T K D E
Sbjct: 235 V-NARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKTAKGLDFE-- 291
Query: 643 DGKFVSVTIKATDQGE---PSLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTN 699
+ + ++ ++ + + TV++ DVN+ P+F + V +D +G
Sbjct: 292 AKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNE-APIFMPAERRVEVPEDFGVGQE 350
Query: 700 ILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLDVYYYIVDSPRN 759
I +A + D + I Y I N
Sbjct: 351 ITSYTAREPDTFMDQKITYR---------------------------------IWRDTAN 377
Query: 760 EGKDFFEINLQSGEVFTKVVFDRE-----KQGAYALEVEARD-GAPSA 801
+ EIN ++G +FT+ DRE K Y + A D G+P A
Sbjct: 378 ----WLEINPETGAIFTRAEMDREDAEHVKNSTYVALIIATDDGSPIA 421
Score = 191 bits (488), Expect = 1e-52
Identities = 82/358 (22%), Positives = 126/358 (35%), Gaps = 75/358 (20%)
Query: 472 IYGPIHIRENVTVSTVVTSVKAR-------------FGFVGGSTSSGQFVIEDITGVIRL 518
+ PI EN V+ + G G F+IE TG +++
Sbjct: 3 VIPPISCPENEKGEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKV 62
Query: 519 NSKSISLDR---DKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKPVFRECS 575
LDR KY L AV + +V+ +TD NDN+P F +
Sbjct: 63 TQ---PLDREAIAKYILYSHAVS-------SNGEAVEDPMEIVITVTDQNDNRPEFTQ-E 111
Query: 576 TYYPKVEEGAPNGSPVIKVHATDEDKGV---NGQVKYSIVQQ-PNQKGAK-FTVDEETGE 630
+ V EGA G+ V+KV ATD D V N + Y+IV Q P FTV+ +TG
Sbjct: 112 VFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGV 171
Query: 631 VVT-NKVFDREGDDGKFVSVTIKATDQGEPSLEGVCSFTVEITDVNDNPPLFDRQKYVEN 689
+ DRE ++ ++A D L + + D+NDN P+F+ Y
Sbjct: 172 ISVLTSGLDRE--SYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQGQ 229
Query: 690 VKQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQPES----GWIVLKK 745
V ++ + I + +D+DA N A + + + F + + G + K
Sbjct: 230 VPENE-VNARIATLKVTDDDAPNTPAWKAVYTVVND--PDQQFVVVTDPTTNDGILKTAK 286
Query: 746 PLDVYYYIVDSPRNEGKDFFEINLQSGEVFTKVVFDREKQGAYALEVEARDGAPSARP 803
L D E + Y L V + P
Sbjct: 287 GL---------------------------------DFEAKQQYILHVRVENEEPFEGS 311
Score = 138 bits (350), Expect = 1e-34
Identities = 51/304 (16%), Positives = 88/304 (28%), Gaps = 68/304 (22%)
Query: 82 VHTDNQRVIIHVKDVNDESPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDSDHN--IH 139
+ V + V DVN+ +P F P + V + + + AR+PD+ + I
Sbjct: 312 LVPSTATVTVDVVDVNE-APIF--MPAERRVEVPEDFGVGQEITSYTAREPDTFMDQKIT 368
Query: 140 YFIVRDRTGGRFEVDERSGVVRTRGTDPFQLDQEYVLYVKAEDQNGRKDERKFQSTPEER 199
Y I RD T E++ +G + TR +D+E +VK
Sbjct: 369 YRIWRD-TANWLEINPETGAIFTRAE----MDREDAEHVKN------------------- 404
Query: 200 LSIVGGKRAPQFYMPSYEAEIPENQKKDTEYPSMTGTATVRIYTKNKNDEEPKFSQQVYT 259
+Y A I D P TGT T+ + + ND P +
Sbjct: 405 --------------STYVALI---IATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRNMQ 447
Query: 260 PNVDENAGPNTLVTTVVASDKD-GDNVSIISVKAKSFADREIRYTLKAQGQGAGTFNIGP 318
+ D D N S + L T
Sbjct: 448 FCQRNPQP-----HIITILDPDLPPNTSPFT------------AELTHGASVNWTIEYND 490
Query: 319 TSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVELTIRVTDVNDNAPKFELPDY 378
+ + + ++ + Y + + D+ L + V D +
Sbjct: 491 AAQESLILQPRKDLEIGE---YKIHLKLA-DNQNKDQVTTLDVHVCDCEGTVNNCMKAHH 546
Query: 379 QAHN 382
H+
Sbjct: 547 HHHH 550
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 253 bits (649), Expect = 3e-75
Identities = 121/596 (20%), Positives = 197/596 (33%), Gaps = 121/596 (20%)
Query: 251 PKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQG 310
+ + +E + + S+KD N ++ Y++ QG
Sbjct: 6 HDWVIPPIKVSENERGPFPKRLVQI-KSNKDRFN--------------KVYYSITGQGAD 50
Query: 311 A---GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGF--STSVELTIRVTD 365
G F I +G + + + LD E Y L A G +E+TI V D
Sbjct: 51 NPPQGVFRIEWETGWMLVTRPLDRE--EYDK-YVLSSHAV-SENGSPVEEPMEITINVID 106
Query: 366 VNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADS---GTNAEIEY--------HVS 414
NDN PKF ++ ++ E + GT ++ V ATD D N + Y
Sbjct: 107 QNDNRPKFTQDVFRG-SVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPI 165
Query: 415 DDNFAVDSN-GVIN-NHKTLDADNNNAYYEFVITAKDKD-------VDVELDVVDRNNKP 465
+ F ++ GVI+ LD + Y + A D + + + D N+
Sbjct: 166 PNLFTINRETGVISLIGTGLDREKFP-EYTLTVQATDLEGAGLSVEGKAIIQITDANDNA 224
Query: 466 PLWDNAIYGPIHIRENVTVSTVVTSVKA-----------RFGFVGGSTSSGQFVIE---- 510
P++D Y + EN + V + + + G F I
Sbjct: 225 PIFDPKTYT-ALVPEN-EIGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPE 282
Query: 511 DITGVIRLNSKSISLDR---DKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDN 567
G++ LD +Y L +T + + T+TA V V + DVN+
Sbjct: 283 SNQGILTTAK---GLDFELRKQYVLQITVENA----EPFSVPLPTSTATVTVTVEDVNEA 335
Query: 568 KPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEE 627
P F + V E G +I + A D DK ++ Y I P + TV+++
Sbjct: 336 -PFFVP-AVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARW---LTVNKD 390
Query: 628 TGEVVTNKVFDREGDDGKFV--SVTIKATDQGEPSLEGVCSFTVEITDVNDNPPLFDRQK 685
G V N DRE + K +V + TD G G + + + DVNDN P+ +
Sbjct: 391 NGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPS-PR 449
Query: 686 YVENVKQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKK 745
Q+ ++ SD D N PY + S
Sbjct: 450 VFTMCDQNPEPQV----LTISDADIPPNTY-------PY------KVSLSHGSD------ 486
Query: 746 PLDVYYYIVDSPRNEGKDFFEINLQSGEVFTKVVFDREKQGAYALEVEARD-GAPS 800
+ G + K+G Y++ V D
Sbjct: 487 ----------------LTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDAQNNP 526
Score = 249 bits (637), Expect = 2e-73
Identities = 116/627 (18%), Positives = 208/627 (33%), Gaps = 147/627 (23%)
Query: 109 PMQAVVQLNAPPNTPVFTLQARDPDSDHNIHYFI----VRDRTGGRFEVDERSGVVRTRG 164
P++ P + +++ + D + ++Y I + G F ++ +G +
Sbjct: 12 PIKVSENERGPFPKRLVQIKS-NKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTR 70
Query: 165 TDPFQLDQE----YVLYVKAEDQNGRKDERKFQSTPEERLSIVGGKRAPQFYMPSYEAEI 220
LD+E YVL A +NG
Sbjct: 71 P----LDREEYDKYVLSSHAVSENG----------------------------------- 91
Query: 221 PENQKKDTEYPSMTGTATVRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDK 280
+ + I ++ND PKF+Q V+ +V E P T V V A+D+
Sbjct: 92 ----------SPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDE 141
Query: 281 D----GDNVSIISVKAKSFADREIRYTLKAQ---GQGAGTFNIGPTSGIVKLAKE-LDFE 332
D N + Y++ Q F I +G++ L LD E
Sbjct: 142 DDNIDSLN-------------GVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDRE 188
Query: 333 DLRQPHVYSLIVTAT-EDSGGFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGT 391
+ Y+L V AT + G S + I++TD NDNAP F+ Y A + E+ G
Sbjct: 189 KFPE---YTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTAL-VPEN-EIGF 243
Query: 392 SILKVKATDADSGTNAEIEYHVS-----DDNFAVDSN-----GVINNHKTLDADNNNAYY 441
+ ++ TD D + F + ++ G++ K LD + Y
Sbjct: 244 EVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYV 303
Query: 442 EFVITAKDKDVD----------VELDVVDRNNKPPLWDNAIYGPIHIRENVTVSTVVTSV 491
IT ++ + V + V D N P + A+ + + E+++ + S+
Sbjct: 304 -LQITVENAEPFSVPLPTSTATVTVTVEDVNE-APFFVPAVS-RVDVSEDLSRGEKIISL 360
Query: 492 KA---------RFGFVGGSTSSGQFVIEDITGVIRLNSKSISLDR-------DKYELNVT 535
A + + G+ + + G++ N +LDR + Y + +
Sbjct: 361 VAQDPDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNG---NLDRESEYVKNNTYTVIML 417
Query: 536 AVDDGACCANGDQSVHTATAVVVVFITDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVH 595
DDG SV T T +++ + DVNDN PV P+V +
Sbjct: 418 VTDDG-------VSVGTGTGTLILHVLDVNDNGPVP------SPRVFTMCDQNPEPQVLT 464
Query: 596 ATDEDKGVNGQV-KYSIVQQPNQKGAKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKAT 654
+D D N K S+ + + G + + G + S+ + +
Sbjct: 465 ISDADIPPNTYPYKVSLSHGSD--LTWKAELDSKGTSMLLSPTQQL-KKGDY-SIYVLLS 520
Query: 655 DQGEPSLEGVCSFTVEITDVNDNPPLF 681
D +
Sbjct: 521 DAQNNPQLT--VVNATVCSCEGKAIKC 545
Score = 213 bits (545), Expect = 1e-60
Identities = 102/531 (19%), Positives = 166/531 (31%), Gaps = 129/531 (24%)
Query: 88 RVIIHVKDVNDESPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDSDHN-----IHYFI 142
+ I+V D ND P F + V+ P T V + A D D + + + Y I
Sbjct: 99 EITINVIDQNDNRPKFTQDVF--RGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSI 156
Query: 143 VR----DRTGGRFEVDERSGVVRTRGTDPFQLDQE----YVLYVKAEDQNGRKDERKFQS 194
++ + F ++ +GV+ GT LD+E Y L V+A D G
Sbjct: 157 LKQDPEEPIPNLFTINRETGVISLIGTG---LDREKFPEYTLTVQATDLEG--------- 204
Query: 195 TPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDTEYPSMTGTATVRIYTKNKNDEEPKFS 254
++ I + ND P F
Sbjct: 205 ------------------------------------AGLSVEGKAIIQITDANDNAPIFD 228
Query: 255 QQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGAGTF 314
+ YT V EN V + +D D + K + G F
Sbjct: 229 PKTYTALVPENE-IGFEVQRLSVTDLD------------MPGTPAWQAVYKIRVNEGGFF 275
Query: 315 NIGPT----SGIVKLAKELDFEDLRQPHVYSLIVTAT-EDSGG---FSTSVELTIRVTDV 366
NI GI+ AK LDFE +Q Y L +T + +++ +T+ V DV
Sbjct: 276 NITTDPESNQGILTTAKGLDFELRKQ---YVLQITVENAEPFSVPLPTSTATVTVTVEDV 332
Query: 367 NDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSGTNAEIEYHVSDDN---FAVDS- 422
N+ P F + + ED++ G I+ + A D D ++ Y + +D V+
Sbjct: 333 NEA-PFFVPAVSRVD-VSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKD 390
Query: 423 NGVINNHKTLD---ADNNNAYYEFVITAKDKD-------VDVELDVVDRNNKPPLWDNA- 471
NG++ + LD N Y ++ D + L V+D N DN
Sbjct: 391 NGIVTGNGNLDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVN------DNGP 444
Query: 472 --IYGPIHIRENVTVSTVVTSV-------KARFGF-VGGSTSSGQFVIEDITGVIRLNSK 521
+ + V+T + + + D G L S
Sbjct: 445 VPSPRVFTMCDQNPEPQVLTISDADIPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSP 504
Query: 522 SISLDRDKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKPVFR 572
+ L + Y + V D VV + +
Sbjct: 505 TQQLKKGDYSIYVLLSDAQNN---------PQLTVVNATVCSCEGKAIKCQ 546
Score = 188 bits (479), Expect = 2e-51
Identities = 89/357 (24%), Positives = 136/357 (38%), Gaps = 79/357 (22%)
Query: 475 PIHIREN--VTVSTVVTSVKARFGFVG-----------GSTSSGQFVIEDITGVIRLNSK 521
PI + EN + +K+ + G F IE TG + +
Sbjct: 12 PIKVSENERGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTR- 70
Query: 522 SISLDR---DKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKPVFRECSTYY 578
LDR DKY L+ AV + S + + + D NDN+P F + +
Sbjct: 71 --PLDREEYDKYVLSSHAVS-------ENGSPVEEPMEITINVIDQNDNRPKFTQ-DVFR 120
Query: 579 PKVEEGAPNGSPVIKVHATDED---KGVNGQVKYSIV-QQPNQKGAK-FTVDEETGEV-V 632
V EG G+ V+ V ATDED +NG + YSI+ Q P + FT++ ETG + +
Sbjct: 121 GSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISL 180
Query: 633 TNKVFDREGDDGKFVSVTIKATDQGEPSLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQ 692
DRE ++T++ATD L ++ITD NDN P+FD + Y V +
Sbjct: 181 IGTGLDRE--KFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTALVPE 238
Query: 693 DASIGTNILRVSASDEDADNNGA--IVYTLSAPYNQMDLEYFEIQPE----SGWIVLKKP 746
+ IG + R+S +D D A VY + +F I + G + K
Sbjct: 239 NE-IGFEVQRLSVTDLDMPGTPAWQAVYKIRVNEG----GFFNITTDPESNQGILTTAKG 293
Query: 747 LDVYYYIVDSPRNEGKDFFEINLQSGEVFTKVVFDREKQGAYALEVEARDGAPSARP 803
LD E + Y L++ + P + P
Sbjct: 294 LD---------------------------------FELRKQYVLQITVENAEPFSVP 317
Score = 132 bits (333), Expect = 2e-32
Identities = 54/257 (21%), Positives = 94/257 (36%), Gaps = 53/257 (20%)
Query: 568 KPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAK--FTVD 625
+ E P ++++ + +K +V YSI Q + F ++
Sbjct: 5 HHDWVI-PPIKVSENERGPFPKRLVQIKS---NKDRFNKVYYSITGQGADNPPQGVFRIE 60
Query: 626 EETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEGVCSFTVEITDVNDNPPLFDRQK 685
ETG ++ + DRE D ++ A + +E T+ + D NDN P F +
Sbjct: 61 WETGWMLVTRPLDREEYD--KYVLSSHAVSENGSPVEEPMEITINVIDQNDNRPKFTQDV 118
Query: 686 YVENVKQDASIGTNILRVSASDEDAD---NNGAIVYTLSAPYNQMDLEYFEIQPESGWIV 742
+ +V++ GT ++ VSA+DED + NG + Y++
Sbjct: 119 FRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSI---------------------- 156
Query: 743 LKKPLDVYYYIVDSPRNEGKDFFEINLQSGEVFTKVVF-DREKQGAYALEVEARDGAPSA 801
+ P + F IN ++G + DREK Y L V+A D
Sbjct: 157 ----------LKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDL---- 202
Query: 802 RPNSDGEPNSA-CTPLI 817
+G S +I
Sbjct: 203 ----EGAGLSVEGKAII 215
Score = 121 bits (305), Expect = 6e-29
Identities = 52/295 (17%), Positives = 88/295 (29%), Gaps = 68/295 (23%)
Query: 82 VHTDNQRVIIHVKDVNDESPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDSDHN--IH 139
+ T V + V+DVN+ +P+F P + V + + +L A+DPD +
Sbjct: 318 LPTSTATVTVTVEDVNE-APFF--VPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLS 374
Query: 140 YFIVRDRTGGRFEVDERSGVVRTRGTDPFQLDQEYVLYVKAEDQNGRKDERKFQSTPEER 199
YFI D V++ +G+V G LD+E
Sbjct: 375 YFIGND-PARWLTVNKDNGIVTGNGN----LDRE-------------------------- 403
Query: 200 LSIVGGKRAPQFYMPSYEAEIPENQKKDTEYPSMTGTATVRIYTKNKNDEEPKFSQQVYT 259
+ +Y + D TGT T+ ++ + ND P S +V+T
Sbjct: 404 --------SEYVKNNTYTVIM---LVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFT 452
Query: 260 PNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGAGTFNIGPT 319
+ SD D + +L + G +
Sbjct: 453 MCDQNPE-----PQVLTISDADIP----------PNTYP-YKVSL-SHGSDLTWKAELDS 495
Query: 320 SGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVELTIRVTDVNDNAPKFE 374
G L YS+ V + D+ + V A K +
Sbjct: 496 KGTSMLLSPTQQLKKGD---YSIYVLLS-DAQNNPQLTVVNATVCSCEGKAIKCQ 546
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 221 bits (564), Expect = 9e-66
Identities = 191/288 (66%), Positives = 204/288 (70%), Gaps = 57/288 (19%)
Query: 83 HTDNQRVIIHVKDVNDESPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDSDHNIHYFI 142
+TDNQRVII VKDVNDE PYFINRPLPMQAVVQLNAPPNTPVFTLQARDPD+DHNIHYFI
Sbjct: 86 YTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIHYFI 145
Query: 143 VRDRTGGRFEVDERSGVVRTRGTDPFQLDQEYVLYVKAEDQNGRKDERKFQSTPEERLSI 202
VRDRTGGRFEVDERSGVVRTRGTD FQLD EYVLYVKAEDQNG+ D+R+FQSTPEERLSI
Sbjct: 146 VRDRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSI 205
Query: 203 VGGKRAPQFYMPSYEAEIPENQKKDTEYPSMTGTATVRIYTKNKNDEEPKFSQQVYTPNV 262
VG P+F Y +
Sbjct: 206 VG------------------------------------------GKRAPQFYMPSYEAEI 223
Query: 263 DENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGAGTFNIGPTSGI 322
EN ++ + ++ A DREIRYTLKAQGQGAGTFNIGPTSGI
Sbjct: 224 PENQKKDSDIISIKAKSFA---------------DREIRYTLKAQGQGAGTFNIGPTSGI 268
Query: 323 VKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVELTIRVTDVNDNA 370
VKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSV+LTIRVTDVNDNA
Sbjct: 269 VKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVDLTIRVTDVNDNA 316
Score = 179 bits (456), Expect = 1e-50
Identities = 59/328 (17%), Positives = 113/328 (34%), Gaps = 53/328 (16%)
Query: 389 TGTSILKVKATDADSGTNAEIEYHVSDDN-------------FAVDSNGVINNHKTLD-- 433
+++ T+AD T + + + + V++NG + K D
Sbjct: 2 AVRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYE 61
Query: 434 ---ADNNNAYYEFVITAKDKD-------VDVELDVVDRN-NKPPLWDNAIYGPIHIRENV 482
+ ++ + V + V D N P + + ++ N
Sbjct: 62 ELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNA 121
Query: 483 TVSTVVTSVKA---------RFGFVGGSTSSGQFVIEDITGVIRLNSKSISLDR---DKY 530
+T V +++A + V + G+F +++ +GV+R + +Y
Sbjct: 122 PPNTPVFTLQARDPDTDHNIHYFIVRDR-TGGRFEVDERSGVVRTRG---TDLFQLDMEY 177
Query: 531 ELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKPVFRECSTYYPKVEEGAPNGSP 590
L V A D D +T + I P F +Y ++ E S
Sbjct: 178 VLYVKAEDQN---GKVDDRRFQSTPEERLSIVG-GKRAPQFYM-PSYEAEIPENQKKDSD 232
Query: 591 VIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTNKVFDREGDDGKFV-SV 649
+I + A + +++Y++ Q G F + +G V K D E V S+
Sbjct: 233 IISIKAKSFA---DREIRYTLKAQGQGAG-TFNIGPTSGIVKLAKELDFEDLRQPHVYSL 288
Query: 650 TIKATDQGEPSLEGVCSFTVEITDVNDN 677
+ AT+ T+ +TDVNDN
Sbjct: 289 IVTATEDS-GGFSTSVDLTIRVTDVNDN 315
Score = 176 bits (448), Expect = 2e-49
Identities = 66/311 (21%), Positives = 99/311 (31%), Gaps = 64/311 (20%)
Query: 503 SSGQFVIEDITGVIRLNSKSISLDR---------DKYELNVTAVDDGACCANGDQSVHTA 553
+V + G +R+ K D D + + +T
Sbjct: 39 DDNPWVTVETNGAVRVKKK---WDYEELGPEKTIDFWVIITNMGH-------NAGIKYTD 88
Query: 554 TAVVVVFITDVNDNKPVFRECSTYY-PKVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIV 612
V++ + DVND P F V+ AP +PV + A D D N Y IV
Sbjct: 89 NQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDTDHNIH--YFIV 146
Query: 613 QQPNQKGAKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEGVCSFTVEIT 672
+ G +F VDE +G V T + + +KA DQ + T E
Sbjct: 147 R-DRTGG-RFEVDERSGVVRTRGTDLFQ--LDMEYVLYVKAEDQNGKVDDRRFQSTPEER 202
Query: 673 ---DVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDL 729
P F Y + ++ ++I+ + A + I YTL A
Sbjct: 203 LSIVGGKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA---DREIRYTLKAQGQ--GA 257
Query: 730 EYFEIQPESGWIVLKKPLDVYYYIVDSPRNEGKDFFEINLQSGEVFTKVVFDREKQGAYA 789
F I P SG + L K LD FE D + Y+
Sbjct: 258 GTFNIGPTSGIVKLAKELD----------------FE--------------DLRQPHVYS 287
Query: 790 LEVEARDGAPS 800
L V A + +
Sbjct: 288 LIVTATEDSGG 298
Score = 165 bits (419), Expect = 1e-45
Identities = 66/329 (20%), Positives = 114/329 (34%), Gaps = 52/329 (15%)
Query: 272 VTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDF 331
+ ++ DGD + + D+E + T+G V++ K+ D+
Sbjct: 6 TKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNP-----WVTVETNGAVRVKKKWDY 60
Query: 332 EDLRQPHVYSLIVTATEDS----GGFSTSVELTIRVTDVNDNAPKFELPDYQAH-NIDED 386
E+L V T ++ + + I V DVND P F + +
Sbjct: 61 EELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLN 120
Query: 387 ITTGTSILKVKATDADSGTNAEIEY--HVSDDNFAVDSN-GVINNHKTLDADNNNAYYEF 443
T + ++A D D+ N + F VD GV+ T + Y
Sbjct: 121 APPNTPVFTLQARDPDTDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDLFQ-LDMEYVL 179
Query: 444 VITAKDK-----------DVDVELDVVDRNNKPPLWDNAIYGPIHIRENVTVSTVVTSVK 492
+ A+D+ + L +V + P + Y I EN + + S+K
Sbjct: 180 YVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYE-AEIPENQKKDSDIISIK 237
Query: 493 A--------RFGFVGGSTSSGQFVIEDITGVIRLNSKSISLDR------DKYELNVTAVD 538
A R+ +G F I +G+++L LD Y L VTA +
Sbjct: 238 AKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAK---ELDFEDLRQPHVYSLIVTATE 294
Query: 539 DGACCANGDQSVHTATAVVVVFITDVNDN 567
D + + + + +TDVNDN
Sbjct: 295 DS--------GGFSTSVDLTIRVTDVNDN 315
Score = 157 bits (399), Expect = 6e-43
Identities = 78/396 (19%), Positives = 126/396 (31%), Gaps = 121/396 (30%)
Query: 117 NAPPNTPVFTLQARDPDSDHN--IHYFIVRDRTGGRFEV--------DERSGVVRTRG-- 164
+A P ++ + D D + + ++ F++ E +G VR +
Sbjct: 1 SAVR--PTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKW 58
Query: 165 ----TDPFQLDQEYVLYVKAEDQNGRKDERKFQSTPEERLSIVGGKRAPQFYMPSYEAEI 220
P + +V+ G
Sbjct: 59 DYEELGPEKTIDFWVIITNMGHNAG----------------------------------- 83
Query: 221 PENQKKDTEYPSMTGTATVRIYTKNKNDEEPKFSQQV--YTPNVDENAGPNTLVTTVVAS 278
T V I K+ NDE P F + V NA PNT V T+ A
Sbjct: 84 ----------IKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPNTPVFTLQAR 133
Query: 279 DKD-GDNV--SIISVKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLR 335
D D N+ I+ + G F + SG+V+ F+
Sbjct: 134 DPDTDHNIHYFIVR------------------DRTGGRFEVDERSGVVRTRGTDLFQLDM 175
Query: 336 QPHVYSLIVTATEDSGG------FSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITT 389
+ Y L V A D G F ++ E + + AP+F +P Y+A I E+
Sbjct: 176 E---YVLYVKAE-DQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAE-IPENQKK 229
Query: 390 GTSILKVKATDADSGTNAEIEYHVS-----DDNFAVDS-NGVINNHKTLD--ADNNNAYY 441
+ I+ +KA + EI Y + F + +G++ K LD Y
Sbjct: 230 DSDIISIKAKSFA---DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVY 286
Query: 442 EFVITAKDKD------VDVELDVVDRNNKPPLWDNA 471
++TA + VD+ + V D N DNA
Sbjct: 287 SLIVTATEDSGGFSTSVDLTIRVTDVN------DNA 316
Score = 134 bits (340), Expect = 5e-35
Identities = 40/228 (17%), Positives = 72/228 (31%), Gaps = 50/228 (21%)
Query: 590 PVIKVHATDEDKGVNGQVKYSIVQQPNQ------KGAKFTVDEETGEVVTNKVFDREGDD 643
P ++ T+ D G+ + + ++ ++ + E G V K +D E
Sbjct: 5 PTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELG 64
Query: 644 GK----FVSVTIKATDQGEPSLEGVCSFTVEITDVNDNPPLFDRQK--YVENVKQDASIG 697
+ F + + + DVND PP F + V+ +A
Sbjct: 65 PEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRPLPMQAVVQLNAPPN 124
Query: 698 TNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLDVYYYIVDSP 757
T + + A D D D+N ++Y+IV
Sbjct: 125 TPVFTLQARDPDTDHN-----------------------------------IHYFIVR-- 147
Query: 758 RNEGKDFFEINLQSGEVFTKVVFDREKQGAYALEVEARDGAPSARPNS 805
+ FE++ +SG V T+ + Y L V+A D
Sbjct: 148 -DRTGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQNGKVDDRR 194
Score = 44.3 bits (105), Expect = 9e-05
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 5/59 (8%)
Query: 695 SIGTNILRVSASDEDADNNGAIVYTLSAP-----YNQMDLEYFEIQPESGWIVLKKPLD 748
S R+ ++ D D G V+ L + D + +G + +KK D
Sbjct: 1 SAVRPTKRIEFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWD 59
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 189 bits (481), Expect = 5e-54
Identities = 90/356 (25%), Positives = 137/356 (38%), Gaps = 68/356 (19%)
Query: 478 IRENVTVSTVVTSVKA----------RFGFVGGSTSSGQFVIEDITGVIRLNSKSISLDR 527
+ E ++ ++ G + F I DITG I + LDR
Sbjct: 10 LEEFSGPEPILVGRLHTDLDPGSKKIKYILSGDG-AGTIFQINDITGDIHAIKR---LDR 65
Query: 528 ---DKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKPVFRECSTYYPKVEEG 584
+Y L AVD ++ + + ++ + D+NDN P F Y+ V E
Sbjct: 66 EEKAEYTLTAQAVDFE-----TNKPL-EPPSEFIIKVQDINDNAPEF-LNGPYHATVPEM 118
Query: 585 APNGSPVIKVHATDED---KGVNGQVKYSIVQQPNQKGAKFTVDEETGEV-VTNKVFDRE 640
+ G+ V V ATD D G + ++ YSI++ F+++ ET + DRE
Sbjct: 119 SILGTSVTNVTATDADDPVYGNSAKLVYSILEGQP----YFSIEPETAIIKTALPNMDRE 174
Query: 641 GDDGKFVSVTIKATDQG--EPSLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGT 698
+ V I+A D G L G + TV +TDVNDNPP F + Y +V +D +GT
Sbjct: 175 AKE--EYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGT 232
Query: 699 NILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLDVYYYIVDSPR 758
I RV A+D+D N Y + FEI
Sbjct: 233 AIGRVKANDQDIGENAQSSYDIIDGDGT---ALFEI------------------------ 265
Query: 759 NEGKDFFEINLQSGEVFTKVVFDREKQGAYALEVEARDGAPSARPNSDGEPNSACT 814
+ Q G + + D E + +Y L+VEA + R +S G T
Sbjct: 266 -----TSDAQAQDGVIRLRKPLDFETKKSYTLKVEAANIHIDPRFSSRGPFKDTAT 316
Score = 175 bits (446), Expect = 3e-49
Identities = 89/378 (23%), Positives = 142/378 (37%), Gaps = 96/378 (25%)
Query: 117 NAPPNTPVFTLQARDPDS-DHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDPFQLDQE-- 173
+ P + D D I Y + D G F++++ +G + LD+E
Sbjct: 13 FSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIKR----LDREEK 68
Query: 174 --YVLYVKAEDQNGRKDERKFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDTEYP 231
Y L +A D
Sbjct: 69 AEYTLTAQAVDFET--------------------------------------------NK 84
Query: 232 SMTGTATVRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKD----GDNVSI 287
+ + I ++ ND P+F Y V E + T VT V A+D D G++
Sbjct: 85 PLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNS--- 141
Query: 288 ISVKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLA-KELDFEDLRQPHVYSLIVTA 346
++ Y++ +G F+I P + I+K A +D E + Y +++ A
Sbjct: 142 ----------AKLVYSIL---EGQPYFSIEPETAIIKTALPNMDREAKEE---YLVVIQA 185
Query: 347 T---EDSGGFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADS 403
SGG S + LT+ +TDVNDN PKF Y + ED+ GT+I +VKA D D
Sbjct: 186 KDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFS-VPEDVVLGTAIGRVKANDQDI 244
Query: 404 GTNAEIEYHVSDDN----FAVDS-----NGVINNHKTLDADNNNAYYEFVITAKDKDVDV 454
G NA+ Y + D + F + S +GVI K LD + + Y + A + +D
Sbjct: 245 GENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKS-YTLKVEAANIHIDP 303
Query: 455 ELDVVDRNNKPPLWDNAI 472
+++ P D A
Sbjct: 304 RF-----SSRGPFKDTAT 316
Score = 162 bits (413), Expect = 1e-44
Identities = 88/348 (25%), Positives = 139/348 (39%), Gaps = 69/348 (19%)
Query: 253 FSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGAG 312
++Q E +GP ++ + +D D + ++I+Y L G GAG
Sbjct: 4 WNQMFVLE---EFSGPEPILVGRLHTDLDPGS-------------KKIKYIL--SGDGAG 45
Query: 313 T-FNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGG--FSTSVELTIRVTDVNDN 369
T F I +G + K LD E+ + Y+L A + E I+V D+NDN
Sbjct: 46 TIFQINDITGDIHAIKRLDREEKAE---YTLTAQAVDFETNKPLEPPSEFIIKVQDINDN 102
Query: 370 APKFELPDYQAHNIDEDITTGTSILKVKATDADS---GTNAEIEYHVSDDN--FAVDSN- 423
AP+F Y A + E GTS+ V ATDAD G +A++ Y + + F+++
Sbjct: 103 APEFLNGPYHAT-VPEMSILGTSVTNVTATDADDPVYGNSAKLVYSILEGQPYFSIEPET 161
Query: 424 GVINNHKTLDAD---NNNAYYEFVITAKDKD---------VDVELDVVDRNNKPPLWDNA 471
+I KT + Y VI AKD + + + D N+ PP + +
Sbjct: 162 AII---KTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQS 218
Query: 472 IYGPIHIRENVTVSTVVTSVKA-----------RFGFVGGSTSSGQFVIE-DI---TGVI 516
+Y + E+V + T + VKA + + G + F I D GVI
Sbjct: 219 LYH-FSVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGD-GTALFEITSDAQAQDGVI 276
Query: 517 RLNSKSISLDRDK---YELNVTAVDDGACCANGDQSVHTATAVVVVFI 561
RL LD + Y L V A + + TA V + +
Sbjct: 277 RLRK---PLDFETKKSYTLKVEAANIHIDPRFSSRGPFKDTATVKIVV 321
Score = 153 bits (390), Expect = 1e-41
Identities = 78/312 (25%), Positives = 124/312 (39%), Gaps = 46/312 (14%)
Query: 379 QAHNIDEDITTGTSILKVKATDADSGTNAEIEYHVSDDN----FAVDSN-GVINNHKTLD 433
Q ++E ++ TD D G + +I+Y +S D F ++ G I+ K LD
Sbjct: 6 QMFVLEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLD 64
Query: 434 ADNNNAYYEFVITAKDKD--------VDVELDVVDRNNKPPLWDNAIYGPIHIRENVTVS 485
+ A Y A D + + + V D N+ P + N Y + E +
Sbjct: 65 REEK-AEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYH-ATVPEMSILG 122
Query: 486 TVVTSVKAR---FGFVGGST--------SSGQFVIEDITGVIRLNSKSISLDR---DKYE 531
T VT+V A G S F IE T +I+ + +DR ++Y
Sbjct: 123 TSVTNVTATDADDPVYGNSAKLVYSILEGQPYFSIEPETAIIKTALPN--MDREAKEEYL 180
Query: 532 LNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKPVFRECSTYYPKVEEGAPNGSPV 591
+ + A D G G + T + V +TDVNDN P F + S Y+ V E G+ +
Sbjct: 181 VVIQAKDMG-----GHSGGLSGTTTLTVTLTDVNDNPPKFAQ-SLYHFSVPEDVVLGTAI 234
Query: 592 IKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTV----DEETGEVVTNKVFDREGDDGKFV 647
+V A D+D G N Q Y I+ A F + + G + K D E K
Sbjct: 235 GRVKANDQDIGENAQSSYDII--DGDGTALFEITSDAQAQDGVIRLRKPLDFE--TKKSY 290
Query: 648 SVTIKATDQGEP 659
++ ++A +
Sbjct: 291 TLKVEAANIHID 302
Score = 137 bits (348), Expect = 5e-36
Identities = 52/239 (21%), Positives = 97/239 (40%), Gaps = 46/239 (19%)
Query: 569 PVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEET 628
V+ + +EE + ++ TD D G + ++KY + F +++ T
Sbjct: 2 WVWNQMFV----LEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGT--IFQINDIT 54
Query: 629 GEVVTNKVFDREGDDGKFVSVTIKATDQ-GEPSLEGVCSFTVEITDVNDNPPLFDRQKYV 687
G++ K DRE + ++T +A D LE F +++ D+NDN P F Y
Sbjct: 55 GDIHAIKRLDRE--EKAEYTLTAQAVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPYH 112
Query: 688 ENVKQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPL 747
V + + +GT++ V+A+D D G S +V
Sbjct: 113 ATVPEMSILGTSVTNVTATDADDPVYG----------------------NSAKLV----- 145
Query: 748 DVYYYIVDSPRNEGKDFFEINLQSGEVFTKVVF-DREKQGAYALEVEARDGAPSARPNS 805
Y I++ G+ +F I ++ + T + DRE + Y + ++A+D + S
Sbjct: 146 ---YSILE-----GQPYFSIEPETAIIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLS 196
Score = 117 bits (294), Expect = 8e-29
Identities = 65/297 (21%), Positives = 111/297 (37%), Gaps = 89/297 (29%)
Query: 89 VIIHVKDVNDESPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDSDHN-----IHYFIV 143
II V+D+ND +P F+N P A V + T V + A D D + Y I+
Sbjct: 92 FIIKVQDINDNAPEFLNGPY--HATVPEMSILGTSVTNVTATDADDPVYGNSAKLVYSIL 149
Query: 144 RDRTGGRFEVDERSGVVRTRGTDPFQLD----QEYVLYVKAEDQNGRKDERKFQSTPEER 199
+ F ++ + +++T + +D +EY++ ++A+D G
Sbjct: 150 EGQ--PYFSIEPETAIIKTALPN---MDREAKEEYLVVIQAKDMGG-------------- 190
Query: 200 LSIVGGKRAPQFYMPSYEAEIPENQKKDTEYPSMTGTATVRIYTKNKNDEEPKFSQQVYT 259
++GT T+ + + ND PKF+Q +Y
Sbjct: 191 -----------------------------HSGGLSGTTTLTVTLTDVNDNPPKFAQSLYH 221
Query: 260 PNVDENAGPNTLVTTVVASDKD-GDNVSIISVKAKSFADREIRYTLKAQGQGAGTF---- 314
+V E+ T + V A+D+D G+N + Y + G G F
Sbjct: 222 FSVPEDVVLGTAIGRVKANDQDIGEN-------------AQSSYDI-IDGDGTALFEITS 267
Query: 315 NIGPTSGIVKLAKELDFEDLRQPHVYSLIVTAT--------EDSGGFSTSVELTIRV 363
+ G+++L K LDFE + Y+L V A G F + + I V
Sbjct: 268 DAQAQDGVIRLRKPLDFETKKS---YTLKVEAANIHIDPRFSSRGPFKDTATVKIVV 321
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 165 bits (419), Expect = 7e-47
Identities = 55/229 (24%), Positives = 97/229 (42%), Gaps = 36/229 (15%)
Query: 247 NDEEPKFSQQVYTPNVD--ENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTL 304
+ P F+ + + E+ + VT ++A D D D + + +
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDND---------------PLVFGV 46
Query: 305 KAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVELTIRVT 364
+ + + F + P +G+V L + LD E + +++ + + D G T ++ I+V
Sbjct: 47 -SGEEASRFFAVEPDTGVVWLRQPLDRETKSE---FTVEFSVS-DHQGVITR-KVNIQVG 100
Query: 365 DVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSGTNAEIEYHVSDDN--FAVDS 422
DVNDNAP F Y I E+ GT I V ATD D G + Y + FA+DS
Sbjct: 101 DVNDNAPTFHNQPYSVR-IPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDS 159
Query: 423 -NGVINNHKTLDADNNNAYYEFVITAKDK--------DVDVELDVVDRN 462
G++ + LD + A Y+ + A D+ ++ + + D
Sbjct: 160 ARGIVTVIQELDYEVTQA-YQLTVNATDQDKTRPLSTLANLAIIITDMQ 207
Score = 162 bits (412), Expect = 8e-46
Identities = 64/229 (27%), Positives = 94/229 (41%), Gaps = 34/229 (14%)
Query: 462 NNKPPLWDNAIY-GPIHIRENVTVSTVVTSVKAR--------FGFVGGSTSSGQFVIEDI 512
N+ P + N + + I E+ V + VT + AR FG G S F +E
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDPLVFGVSGEEAS-RFFAVEPD 60
Query: 513 TGVIRLNSKSISLDR---DKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKP 569
TGV+ L LDR ++ + + D T V + + DVNDN P
Sbjct: 61 TGVVWLRQ---PLDRETKSEFTVEFSVSDHQ----------GVITRKVNIQVGDVNDNAP 107
Query: 570 VFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETG 629
F Y ++ E P G+P+ V+ATD D G G V YS F +D G
Sbjct: 108 TFHN-QPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSP----FFAIDSARG 162
Query: 630 EVVTNKVFDREGDDGKFVSVTIKATDQGEPS-LEGVCSFTVEITDVNDN 677
V + D E + +T+ ATDQ + L + + + ITD+ D
Sbjct: 163 IVTVIQELDYE--VTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQDM 209
Score = 157 bits (399), Expect = 4e-44
Identities = 53/239 (22%), Positives = 82/239 (34%), Gaps = 49/239 (20%)
Query: 565 NDNKPVFRECS-TYYPKVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFT 623
+ P F Y + E P GS V ++ A D D N + + + + + F
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASR--FFA 56
Query: 624 VDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEGVCSFTVEITDVNDNPPLFDR 683
V+ +TG V + DRE +V +D +++ DVNDN P F
Sbjct: 57 VEPDTGVVWLRQPLDRE--TKSEFTVEFSVSDHQGVIT---RKVNIQVGDVNDNAPTFHN 111
Query: 684 QKYVENVKQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQPESGWIVL 743
Q Y + ++ +GT I V+A+D D G+++Y+
Sbjct: 112 QPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQ---------------------- 149
Query: 744 KKPLDVYYYIVDSPRNEGKDFFEINLQSGEVFTKVVFDREKQGAYALEVEARDGAPSAR 802
FF I+ G V D E AY L V A D +
Sbjct: 150 ----------------PPSPFFAIDSARGIVTVIQELDYEVTQAYQLTVNATDQDKTRP 192
Score = 133 bits (336), Expect = 2e-35
Identities = 59/277 (21%), Positives = 90/277 (32%), Gaps = 73/277 (26%)
Query: 97 NDESPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDSDHNIHYFIVRDRTGGRFEVDER 156
+ P+F N ++ + P + V L ARD D+D + + + + F V+
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDND-PLVFGVSGEEASRFFAVEPD 60
Query: 157 SGVVRTRGTDPFQLDQEYVLYVKAEDQNGRKDERKFQSTPEERLSIVGGKRAPQFYMPSY 216
+GVV R + E+ + D
Sbjct: 61 TGVVWLRQPLDRETKSEFTVEFSVSD---------------------HQG---------- 89
Query: 217 EAEIPENQKKDTEYPSMTGTATVRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVV 276
T V I + ND P F Q Y+ + EN T + V
Sbjct: 90 -----------------VITRKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVN 132
Query: 277 ASDKD-GDNVSIISVKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLR 335
A+D D G + Y+ + + F I GIV + +ELD+E +
Sbjct: 133 ATDPDLGAG-------------GSVLYSFQ---PPSPFFAIDSARGIVTVIQELDYEVTQ 176
Query: 336 QPHVYSLIVTATEDSGG---FSTSVELTIRVTDVNDN 369
Y L V AT D ST L I +TD+ D
Sbjct: 177 A---YQLTVNAT-DQDKTRPLSTLANLAIIITDMQDM 209
Score = 71.9 bits (177), Expect = 2e-14
Identities = 41/131 (31%), Positives = 54/131 (41%), Gaps = 22/131 (16%)
Query: 67 VIEQLLDRDVINH---EVVHTDNQR-----VIIHVKDVNDESPYFINRPLPMQAVVQLNA 118
+ Q LDR+ + E +D+Q V I V DVND +P F N+P + N
Sbjct: 65 WLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGDVNDNAPTFHNQPY--SVRIPENT 122
Query: 119 PPNTPVFTLQARDPDSDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDPFQLD----Q 172
P TP+F + A DPD + Y F +D G+V LD Q
Sbjct: 123 PVGTPIFIVNATDPDLGAGGSVLYSFQPP--SPFFAIDSARGIVTVIQE----LDYEVTQ 176
Query: 173 EYVLYVKAEDQ 183
Y L V A DQ
Sbjct: 177 AYQLTVNATDQ 187
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 148 bits (375), Expect = 7e-41
Identities = 47/223 (21%), Positives = 84/223 (37%), Gaps = 40/223 (17%)
Query: 581 VEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAK--FTVDEETGEVVTNKVFD 638
+ E + G ++ D+ N ++YS+ + F ++ +G++ K D
Sbjct: 9 LPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLD 67
Query: 639 REGDDGKFVSVTIKATDQGEPSLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGT 698
RE + A D +E + + D+NDN P F Q + +V + + GT
Sbjct: 68 RELIA--RFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGT 125
Query: 699 NILRVSASDEDADN--NGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLDVYYYIVDS 756
++ V+A D D N NG + Y + + +
Sbjct: 126 YVMTVTAIDADDPNALNGMLRYRI--------------------------------LSQA 153
Query: 757 PRNEGKDFFEINLQSGEVFTKV-VFDREKQGAYALEVEARDGA 798
P + F IN ++G++ T DREK Y L ++A D
Sbjct: 154 PSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDME 196
Score = 130 bits (328), Expect = 2e-34
Identities = 54/224 (24%), Positives = 90/224 (40%), Gaps = 39/224 (17%)
Query: 475 PIHIRENVTVSTVVTSVKARF--------------GFVGGSTSSGQFVIEDITGVIRLNS 520
PI++ EN + G +G F+I I+G + +
Sbjct: 6 PINLPENSRG-PFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTK 64
Query: 521 KSISLDR---DKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKPVFRECSTY 577
LDR ++ L AVD + +V+ + D+NDN+P F +
Sbjct: 65 ---PLDRELIARFHLRAHAVDIN-------GNQVENPIDIVINVIDMNDNRPEFLH-QVW 113
Query: 578 YPKVEEGAPNGSPVIKVHATDED--KGVNGQVKYSIVQQ--PNQKGAKFTVDEETGEVVT 633
V EG+ G+ V+ V A D D +NG ++Y I+ Q FT++ ETG+++T
Sbjct: 114 NGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIIT 173
Query: 634 -NKVFDREGDDGKFVSVTIKATDQGEP---SLEGVCSFTVEITD 673
DRE + ++ I+ATD L + + +TD
Sbjct: 174 VAAGLDRE--KVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 124 bits (314), Expect = 1e-32
Identities = 50/208 (24%), Positives = 80/208 (38%), Gaps = 36/208 (17%)
Query: 261 NVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQG---AGTFNIG 317
N+ EN+ +V D D + +RY++ G G F I
Sbjct: 8 NLPENS-RGPFPQELVRIRSDRDK------------NLSLRYSVTGPGADQPPTGIFIIN 54
Query: 318 PTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGG--FSTSVELTIRVTDVNDNAPKFEL 375
P SG + + K LD E + + + L A D G +++ I V D+NDN P+F
Sbjct: 55 PISGQLSVTKPLDRELIAR---FHLRAHAV-DINGNQVENPIDIVINVIDMNDNRPEFLH 110
Query: 376 PDYQAHNIDEDITTGTSILKVKATDAD--SGTNAEIEYHVSDDN--------FAVDSN-G 424
+ + E GT ++ V A DAD + N + Y + F +++ G
Sbjct: 111 QVWNGS-VPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETG 169
Query: 425 VIN-NHKTLDADNNNAYYEFVITAKDKD 451
I LD + Y +I A D +
Sbjct: 170 DIITVAAGLDRE-KVQQYTLIIQATDME 196
Score = 109 bits (274), Expect = 3e-27
Identities = 59/268 (22%), Positives = 84/268 (31%), Gaps = 88/268 (32%)
Query: 120 PNTPVFTLQARDPDSDHN--IHYFI----VRDRTGGRFEVDERSGVVRTRGTDPFQLDQE 173
L D D N + Y + G F ++ SG + LD+E
Sbjct: 14 RGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP----LDRE 69
Query: 174 ----YVLYVKAEDQNGRKDERKFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDTE 229
+ L A D NG
Sbjct: 70 LIARFHLRAHAVDING-------------------------------------------- 85
Query: 230 YPSMTGTATVRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKD---GDNVS 286
+ + I + ND P+F QV+ +V E + P T V TV A D D N
Sbjct: 86 -NQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNG- 143
Query: 287 IISVKAKSFADREIRYTLKAQ---GQGAGTFNIGPTSG-IVKLAKELDFEDLRQPHVYSL 342
+RY + +Q F I +G I+ +A LD E ++Q Y+L
Sbjct: 144 ------------MLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQ---YTL 188
Query: 343 IVTATEDSGG-----FSTSVELTIRVTD 365
I+ AT D G S + I VTD
Sbjct: 189 IIQAT-DMEGNPTYGLSNTATAVITVTD 215
Score = 97.1 bits (242), Expect = 5e-23
Identities = 45/217 (20%), Positives = 82/217 (37%), Gaps = 44/217 (20%)
Query: 382 NIDEDITTGTSILKVKATDADSGTNAEIEYHVSDDN--------FAVDSN-GVINNHKTL 432
N+ E+ + G ++ +D N + Y V+ F ++ G ++ K L
Sbjct: 8 NLPEN-SRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 66
Query: 433 DADNNNAYYEFVITAKDKD-------VDVELDVVDRNNKPPLWDNAIYGPIHIRENVTVS 485
D + A + A D + +D+ ++V+D N+ P + + ++ + E
Sbjct: 67 DRELI-ARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVW-NGSVPEGSKPG 124
Query: 486 TVVTSVKA-------------RFGFVGG---STSSGQFVIEDITGVIRLNSKSISLDR-- 527
T V +V A R+ + + S F I + TG I + LDR
Sbjct: 125 TYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAA--GLDREK 182
Query: 528 -DKYELNVTAVDDGACCANGDQSVHTATAVVVVFITD 563
+Y L + A D G + TA V+ +TD
Sbjct: 183 VQQYTLIIQATDMEGNPTYG----LSNTATAVITVTD 215
Score = 71.2 bits (175), Expect = 4e-14
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 17/114 (14%)
Query: 84 TDNQRVIIHVKDVNDESPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDSDH----NIH 139
+ ++I+V D+ND P F+++ V + P T V T+ A D D + +
Sbjct: 89 ENPIDIVINVIDMNDNRPEFLHQ--VWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLR 146
Query: 140 YFIV----RDRTGGRFEVDERSGVVRTRGTDPFQLDQE----YVLYVKAEDQNG 185
Y I+ + F ++ +G + T LD+E Y L ++A D G
Sbjct: 147 YRILSQAPSTPSPNMFTINNETGDIITVAA---GLDREKVQQYTLIIQATDMEG 197
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 147 bits (372), Expect = 2e-40
Identities = 49/236 (20%), Positives = 100/236 (42%), Gaps = 48/236 (20%)
Query: 575 STYYPKVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTN 634
+ + +EE + + +D+D+G +G +KY + + G F ++E TG++
Sbjct: 4 ANQFFLLEEYTGSDYQYVGKLHSDQDRG-DGSLKYILS--GDGAGDLFIINENTGDIQAT 60
Query: 635 KVFDREGDDGKFVSVTIKATDQG-EPSLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQD 693
K DRE + +A ++ +E F ++I D+NDN P+F + Y V +
Sbjct: 61 KRLDREEKP--VYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEM 118
Query: 694 ASIGTNILRVSASDEDADN---NGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLDVY 750
A +GT +++V+A+D D + +VY++
Sbjct: 119 ADVGTFVVQVTATDADDPTYGNSAKVVYSIL----------------------------- 149
Query: 751 YYIVDSPRNEGKDFFEINLQSGEVFTKVV-FDREKQGAYALEVEARDGAPSARPNS 805
+G+ +F + ++G + T ++ DRE + Y + ++A+D S
Sbjct: 150 ---------QGQPYFSVESETGIIKTALLNMDRENREQYQVVIQAKDMGGQMGGLS 196
Score = 132 bits (335), Expect = 2e-35
Identities = 55/200 (27%), Positives = 85/200 (42%), Gaps = 30/200 (15%)
Query: 262 VDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGAGTFNIGPTSG 321
++E G + + SD+D + ++Y L G G F I +G
Sbjct: 10 LEEYTGSDYQYVGKLHSDQDRGD-------------GSLKYILSGDGAG-DLFIINENTG 55
Query: 322 IVKLAKELDFEDLRQPHVYSLIVTATEDSGG---FSTSVELTIRVTDVNDNAPKFELPDY 378
++ K LD E +P Y L A + E I++ D+NDN P F Y
Sbjct: 56 DIQATKRLDRE--EKPV-YILRAQAV-NRRTGRPVEPESEFIIKIHDINDNEPIFTKDVY 111
Query: 379 QAHNIDEDITTGTSILKVKATDADS---GTNAEIEYHVSDDN--FAVDSN-GVIN-NHKT 431
A + E GT +++V ATDAD G +A++ Y + F+V+S G+I
Sbjct: 112 TAT-VPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQPYFSVESETGIIKTALLN 170
Query: 432 LDADNNNAYYEFVITAKDKD 451
+D + N Y+ VI AKD
Sbjct: 171 MDRE-NREQYQVVIQAKDMG 189
Score = 128 bits (325), Expect = 3e-34
Identities = 56/216 (25%), Positives = 87/216 (40%), Gaps = 36/216 (16%)
Query: 477 HIRENVTVSTVVTSVKA----------RFGFVGGSTSSGQFVIEDITGVIRLNSKSISLD 526
+ E ++ G + F+I + TG I+ LD
Sbjct: 9 LLEEYTGSDYQYVGKLHSDQDRGDGSLKYILSGDG-AGDLFIINENTGDIQATK---RLD 64
Query: 527 R---DKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKPVFRECSTYYPKVEE 583
R Y L AV+ + ++ I D+NDN+P+F + Y V E
Sbjct: 65 REEKPVYILRAQAVN------RRTGRPVEPESEFIIKIHDINDNEPIFTK-DVYTATVPE 117
Query: 584 GAPNGSPVIKVHATDED---KGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTNKV-FDR 639
A G+ V++V ATD D G + +V YSI+Q F+V+ ETG + T + DR
Sbjct: 118 MADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQPY----FSVESETGIIKTALLNMDR 173
Query: 640 EGDDGKFVSVTIKATDQGEP--SLEGVCSFTVEITD 673
E + + V I+A D G L G + + +TD
Sbjct: 174 E--NREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207
Score = 110 bits (277), Expect = 1e-27
Identities = 51/258 (19%), Positives = 87/258 (33%), Gaps = 72/258 (27%)
Query: 117 NAPPNTPVFTLQARDPDSDHN-IHYFIVRDRTGGRFEVDERSGVVRTRGTDPFQLDQE-- 173
+ D D + Y + D G F ++E +G ++ LD+E
Sbjct: 13 YTGSDYQYVGKLHSDQDRGDGSLKYILSGDGAGDLFIINENTGDIQATKR----LDREEK 68
Query: 174 --YVLYVKAEDQNGRKDERKFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDTEYP 231
Y+L +A ++
Sbjct: 69 PVYILRAQAVNRRT--------------------------------------------GR 84
Query: 232 SMTGTATVRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVK 291
+ + I + ND EP F++ VYT V E A T V V A+D D +
Sbjct: 85 PVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSA-- 142
Query: 292 AKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLA-KELDFEDLRQPHVYSLIVTAT--- 347
++ Y++ QG F++ +GI+K A +D E+ Q Y +++ A
Sbjct: 143 -------KVVYSIL---QGQPYFSVESETGIIKTALLNMDRENREQ---YQVVIQAKDMG 189
Query: 348 EDSGGFSTSVELTIRVTD 365
GG S + + I +TD
Sbjct: 190 GQMGGLSGTTTVNITLTD 207
Score = 97.4 bits (243), Expect = 3e-23
Identities = 44/215 (20%), Positives = 81/215 (37%), Gaps = 43/215 (20%)
Query: 379 QAHNIDEDITTGTSILKVKATDADSGTNAEIEYHVSDDN----FAVDSN-GVINNHKTLD 433
Q ++E + + +D D G + ++Y +S D F ++ N G I K LD
Sbjct: 6 QFFLLEEYTGSDYQYVGKLHSDQDRG-DGSLKYILSGDGAGDLFIINENTGDIQATKRLD 64
Query: 434 ADNNNAYYEFVITAKDKD--------VDVELDVVDRNNKPPLWDNAIYGPIHIRENVTVS 485
+ Y A ++ + + + D N+ P++ +Y + E V
Sbjct: 65 RE-EKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVY-TATVPEMADVG 122
Query: 486 TVVTSVKA--------------RFGFVGGSTSSGQFVIEDITGVIRLNSKSISLDR---D 528
T V V A + + G F +E TG+I+ ++DR +
Sbjct: 123 TFVVQVTATDADDPTYGNSAKVVYSILQG---QPYFSVESETGIIKTALL--NMDRENRE 177
Query: 529 KYELNVTAVDDGACCANGDQSVHTATAVVVVFITD 563
+Y++ + A D G G + T V + +TD
Sbjct: 178 QYQVVIQAKDMG-----GQMGGLSGTTTVNITLTD 207
Score = 66.9 bits (164), Expect = 1e-12
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 16/106 (15%)
Query: 89 VIIHVKDVNDESPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDSDHN-----IHYFIV 143
II + D+ND P F A V A T V + A D D + Y I+
Sbjct: 92 FIIKIHDINDNEPIFTKDV--YTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSIL 149
Query: 144 RDRTGGRFEVDERSGVVRTRGTDPFQLDQE----YVLYVKAEDQNG 185
+ + F V+ +G+++T +D+E Y + ++A+D G
Sbjct: 150 QGQ--PYFSVESETGIIKTALL---NMDRENREQYQVVIQAKDMGG 190
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 147 bits (372), Expect = 2e-40
Identities = 54/236 (22%), Positives = 99/236 (41%), Gaps = 48/236 (20%)
Query: 576 TYYPKVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTNK 635
+ +EE ++ +D D G +G +KY + G F +D+++G + K
Sbjct: 6 NQFFVIEEYTGPDPVLVGRLHSDIDSG-DGNIKYIL--SGEGAGTIFVIDDKSGNIHATK 62
Query: 636 VFDREGDDGKFVSVTIKATDQGEP-SLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQDA 694
DRE ++ +A D+ LE F V++ D+NDNPP F + Y NV + +
Sbjct: 63 TLDREERA--QYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERS 120
Query: 695 SIGTNILRVSASDEDADN---NGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLDVYY 751
++GT++++V+ASD D + +VY++
Sbjct: 121 NVGTSVIQVTASDADDPTYGNSAKLVYSIL------------------------------ 150
Query: 752 YIVDSPRNEGKDFFEINLQSGEVFTKV-VFDREKQGAYALEVEARDGAPSARPNSD 806
EG+ +F + Q+G + T + DRE + Y + ++A+D S
Sbjct: 151 --------EGQPYFSVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSG 198
Score = 143 bits (363), Expect = 3e-39
Identities = 57/221 (25%), Positives = 91/221 (41%), Gaps = 36/221 (16%)
Query: 478 IRENVTVSTVVTSVKA----------RFGFVGGSTSSGQFVIEDITGVIRLNSKSISLDR 527
I E V+ ++ G + FVI+D +G I +LDR
Sbjct: 11 IEEYTGPDPVLVGRLHSDIDSGDGNIKYILSGEG-AGTIFVIDDKSGNIHATK---TLDR 66
Query: 528 ---DKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKPVFRECSTYYPKVEEG 584
+Y L AVD ++ + + +V + D+NDN P F Y+ V E
Sbjct: 67 EERAQYTLMAQAVDRD-----TNRPL-EPPSEFIVKVQDINDNPPEFLH-EIYHANVPER 119
Query: 585 APNGSPVIKVHATDEDK---GVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTN-KVFDRE 640
+ G+ VI+V A+D D G + ++ YSI++ F+V+ +TG + T DRE
Sbjct: 120 SNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQP----YFSVEAQTGIIRTALPNMDRE 175
Query: 641 GDDGKFVSVTIKATDQG--EPSLEGVCSFTVEITDVNDNPP 679
+ V I+A D G L G T+ +TD +
Sbjct: 176 --AKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDD 214
Score = 136 bits (344), Expect = 1e-36
Identities = 58/224 (25%), Positives = 95/224 (42%), Gaps = 39/224 (17%)
Query: 262 VDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGAGTFNIGPTSG 321
++E GP+ ++ + SD D + I+Y L +G G F I SG
Sbjct: 11 IEEYTGPDPVLVGRLHSDIDSGD-------------GNIKYILSGEGAG-TIFVIDDKSG 56
Query: 322 IVKLAKELDFEDLRQPHVYSLIVTATEDSGG---FSTSVELTIRVTDVNDNAPKFELPDY 378
+ K LD E+ + Y+L+ A D E ++V D+NDN P+F Y
Sbjct: 57 NIHATKTLDREE--RAQ-YTLMAQAV-DRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIY 112
Query: 379 QAHNIDEDITTGTSILKVKATDADS---GTNAEIEYHVSDDN--FAVDSN-GVIN-NHKT 431
A+ + E GTS+++V A+DAD G +A++ Y + + F+V++ G+I
Sbjct: 113 HAN-VPERSNVGTSVIQVTASDADDPTYGNSAKLVYSILEGQPYFSVEAQTGIIRTALPN 171
Query: 432 LDADNNNAYYEFVITAKDKD---------VDVELDVVDRNNKPP 466
+D + Y VI AKD V + + D
Sbjct: 172 MDRE-AKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDD 214
Score = 130 bits (329), Expect = 1e-34
Identities = 56/270 (20%), Positives = 100/270 (37%), Gaps = 74/270 (27%)
Query: 113 VVQLNAPPNTPVFTLQARDPDS-DHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDPFQLD 171
V++ P+ + D DS D NI Y + + G F +D++SG + T LD
Sbjct: 10 VIEEYTGPDPVLVGRLHSDIDSGDGNIKYILSGEGAGTIFVIDDKSGNIHATKT----LD 65
Query: 172 QE----YVLYVKAEDQNGRKDERKFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKD 227
+E Y L +A D++
Sbjct: 66 REERAQYTLMAQAVDRDT------------------------------------------ 83
Query: 228 TEYPSMTGTATVRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSI 287
+ + + ++ ND P+F ++Y NV E + T V V ASD D
Sbjct: 84 --NRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGN 141
Query: 288 ISVKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLA-KELDFEDLRQPHVYSLIVTA 346
+ ++ Y++ +G F++ +GI++ A +D E + Y +++ A
Sbjct: 142 SA---------KLVYSIL---EGQPYFSVEAQTGIIRTALPNMDREAKEE---YHVVIQA 186
Query: 347 TEDSGG----FSTSVELTIRVTDVNDNAPK 372
D GG S + ++TI +TD + K
Sbjct: 187 K-DMGGHMGGLSGTTKVTITLTDDYKDDDK 215
Score = 66.9 bits (164), Expect = 1e-12
Identities = 32/173 (18%), Positives = 57/173 (32%), Gaps = 59/173 (34%)
Query: 89 VIIHVKDVNDESPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDSDHN-----IHYFIV 143
I+ V+D+ND P F++ A V + T V + A D D + Y I+
Sbjct: 93 FIVKVQDINDNPPEFLHEI--YHANVPERSNVGTSVIQVTASDADDPTYGNSAKLVYSIL 150
Query: 144 RDRTGGRFEVDERSGVVRTRGTDPFQLD----QEYVLYVKAEDQNGRKDERKFQSTPEER 199
F V+ ++G++RT +D +EY + ++A+D G
Sbjct: 151 EG--QPYFSVEAQTGIIRTALP---NMDREAKEEYHVVIQAKDMGG-------------- 191
Query: 200 LSIVGGKRAPQFYMPSYEAEIPENQKKDTEYPSMTGTATVRIYTKNKNDEEPK 252
++GT V I + ++ K
Sbjct: 192 -----------------------------HMGGLSGTTKVTITLTDDYKDDDK 215
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 147 bits (373), Expect = 3e-40
Identities = 35/243 (14%), Positives = 66/243 (27%), Gaps = 47/243 (19%)
Query: 478 IRENVTVSTVVTSVKA-----------------RFGFVGGSTSSGQFVIEDITGVIRLNS 520
+ + T + V A + + I++ TG++ L
Sbjct: 12 LYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQR 71
Query: 521 KSISLDR-----------DKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKP 569
SLD L V + + + V+ + N + P
Sbjct: 72 ---SLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQ-WPGCARVYFSFFNTSFP 127
Query: 570 VFRECS---------TYYPKVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGA 620
++ E P G+ + V Y +++
Sbjct: 128 ACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGEGL--- 184
Query: 621 KFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQ-GEPSLEGVCSFTVEITDVNDNPP 679
F ++ EV T DRE + + T G + F V + D +D+ P
Sbjct: 185 PFRSAPDSLEVSTRWALDREQRE--KYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAP 242
Query: 680 LFD 682
F+
Sbjct: 243 EFE 245
Score = 136 bits (345), Expect = 2e-36
Identities = 32/251 (12%), Positives = 70/251 (27%), Gaps = 64/251 (25%)
Query: 575 STYYPKVEEGAPNGSPVIKVHAT--DEDKGVNGQVKYSIVQQPNQKGAK---FTVDEETG 629
Y+ K+ G+P++ VHA ++ + ++ + + + + E+TG
Sbjct: 6 DAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTG 65
Query: 630 EVVTNKVFDREGDDG------------KFVSVTIKATDQGEPSLEGVCSFTVEITDVNDN 677
+ + D + ++ V + T E + V + N +
Sbjct: 66 LLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTS 125
Query: 678 PP----------LFDRQKYVENVKQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQM 727
P F + ++++ GT + ++ Y L
Sbjct: 126 FPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEG---- 181
Query: 728 DLEYFEIQPESGWIVLKKPLDVYYYIVDSPRNEGKDFFEINLQSGEVFTKVVFDREKQGA 787
+ F P+S + + L DRE++
Sbjct: 182 EGLPFRSAPDSLEVSTRWAL---------------------------------DREQREK 208
Query: 788 YALEVEARDGA 798
Y L A
Sbjct: 209 YELVAVCTVHA 219
Score = 127 bits (321), Expect = 3e-33
Identities = 36/252 (14%), Positives = 67/252 (26%), Gaps = 42/252 (16%)
Query: 253 FSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGAG 312
FS+ Y + + T + V A + V + + + T + +
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLG------QHLYGTYRTRLHENN 56
Query: 313 TFNIGPTSGIVKLAKELDFED-----LRQPHVYSLIVTAT-------EDSGGFSTSVELT 360
I +G++ L + LD +R L V G
Sbjct: 57 WIRIQEDTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCAR 116
Query: 361 IRVTDVNDNAP----------KFELPDYQAHNIDEDITTGTSILKVKATDADSGTNAEIE 410
+ + N + P F I E+ GT +
Sbjct: 117 VYFSFFNTSFPACSSLKPRELCFPETRPSFR-IRENRPPGTFHQFRLLPVQFLCPQISVA 175
Query: 411 YHVSDDN---FAVDSN-GVINNHKTLDADNNNAYYEFVITAKDK--------DVDVELDV 458
Y + + F + ++ LD + YE V V + V
Sbjct: 176 YRLLEGEGLPFRSAPDSLEVSTRWALDRE-QREKYELVAVCTVHAGAREEVVMVPFPVTV 234
Query: 459 VDRNNKPPLWDN 470
D ++ P ++N
Sbjct: 235 YDEDDSAPEFEN 246
Score = 125 bits (315), Expect = 2e-32
Identities = 41/295 (13%), Positives = 76/295 (25%), Gaps = 73/295 (24%)
Query: 102 YFINRPLPMQAVVQLNAPPNTPVFTLQARDPDSDHNIHYFIV---------RDRTGGRFE 152
YF + ++ TP+ + A + + + R
Sbjct: 2 YFSRDA--YWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIR 59
Query: 153 VDERSGVVRTRGTDPFQLDQEYVLYVKAEDQNGRKDERKFQSTPEERLSIVGGKRAPQFY 212
+ E +G++ + + LD + ++ F
Sbjct: 60 IQEDTGLLYLQRS----LDHSSWEKLSVRNRG--------------------------FP 89
Query: 213 MPSYEAEIPENQKKDTEYPSMTGTATVRIYTKNKNDEEP----------KFSQQVYTPNV 262
+ + ++ R+Y N P F + + +
Sbjct: 90 LLTVYLKV-FLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRI 148
Query: 263 DENAGPNTLVTTVVASDKD-GDNVSIISVKAKSFADREIRYTLKAQGQGAGTFNIGPTSG 321
EN P T + + + Y L F P S
Sbjct: 149 RENRPPGTFHQFRLLPVQFLCPQ-------------ISVAYRL--LEGEGLPFRSAPDSL 193
Query: 322 IVKLAKELDFEDLRQPHVYSLIVTATEDSGG--FSTSVELTIRVTDVNDNAPKFE 374
V LD E + Y L+ T +G V + V D +D+AP+FE
Sbjct: 194 EVSTRWALDREQREK---YELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAPEFE 245
Score = 96.5 bits (240), Expect = 2e-22
Identities = 36/254 (14%), Positives = 65/254 (25%), Gaps = 67/254 (26%)
Query: 373 FELPDYQAHNIDEDITTGTSILKVKAT--DADSGTNAEIEYHV---------SDDNFAVD 421
F Y + D GT +L V A + + + H+ ++ +
Sbjct: 3 FSRDAYWE-KLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQ 61
Query: 422 SN-GVINNHKTLD-------ADNNNAYYEFVITAKDKDVD-------------VELDVVD 460
+ G++ ++LD + N + + K +
Sbjct: 62 EDTGLLYLQRSLDHSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSF 121
Query: 461 RN-NKPPLWDNAIYGP--------IHIRENVTVSTVVTSVKA-----------RFGFVGG 500
N + P IREN T + + G
Sbjct: 122 FNTSFPACSSLKPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEG 181
Query: 501 STSSGQFVIEDITGVIRLNSKSISLDR---DKYELNVTAVDDGACCANGDQSVHTATAVV 557
F + + +LDR +KYEL G +
Sbjct: 182 --EGLPFRSAPDSLEVSTRW---ALDREQREKYELVAVCTVHA-----GARE-EVVMVPF 230
Query: 558 VVFITDVNDNKPVF 571
V + D +D+ P F
Sbjct: 231 PVTVYDEDDSAPEF 244
Score = 69.6 bits (170), Expect = 2e-13
Identities = 20/131 (15%), Positives = 30/131 (22%), Gaps = 19/131 (14%)
Query: 70 QLLDRDVINHEVVHTDNQRVIIHVKDVNDESPYFINRPLPMQAVVQL--------NAPPN 121
++ E ++ N P + + N PP
Sbjct: 96 KVFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFRIRENRPPG 155
Query: 122 TPVFTLQARDPDSDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDPFQLDQE----YV 175
T + Y ++ G F S V TR LD+E Y
Sbjct: 156 TFHQFRLLPVQFLCPQISVAYRLLEG-EGLPFRSAPDSLEVSTRWA----LDREQREKYE 210
Query: 176 LYVKAEDQNGR 186
L G
Sbjct: 211 LVAVCTVHAGA 221
Score = 60.7 bits (147), Expect = 2e-10
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 681 FDRQKYVENVKQDASIGTNILRVSASDEDAD--NNGAIVYTLSAPYNQM--DLEYFEIQP 736
F R Y E + D + GT +L V A + + + + L Y + + IQ
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQE 62
Query: 737 ESGWIVLKKPLD 748
++G + L++ LD
Sbjct: 63 DTGLLYLQRSLD 74
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 145 bits (369), Expect = 5e-40
Identities = 54/230 (23%), Positives = 86/230 (37%), Gaps = 39/230 (16%)
Query: 581 VEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTNKVFDRE 640
+ P V KV +D +G ++ V Q + F ++E TG V + DRE
Sbjct: 12 ENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKG--TFRINENTGSVSVTRTLDRE 69
Query: 641 GDDGKFVSVTIKATDQGEPSLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNI 700
+ ++ TD +LEG V + D NDN P+F Y+ +V + + GT +
Sbjct: 70 TIA--TYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTV 127
Query: 701 LRVSASDEDADN--NGAIVYTL-SAPYNQMDLEYFEIQPESGWIVLKKPLDVYYYIVDSP 757
+R++A D D N + Y + ++ F I PE G IV
Sbjct: 128 MRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVS----------- 176
Query: 758 RNEGKDFFEINLQSGEVFTKVVFDRE--KQGAYALEVEARDGAPSARPNS 805
+ DRE + Y L +EA+D A +
Sbjct: 177 -------------------PALLDRETLENPKYELIIEAQDMAGLDVGLT 207
Score = 134 bits (338), Expect = 8e-36
Identities = 62/223 (27%), Positives = 91/223 (40%), Gaps = 35/223 (15%)
Query: 475 PIHIRENVTVS--TVVTSVKAR------FGFVGGSTSS----GQFVIEDITGVIRLNSKS 522
PI I EN V V + G G F I + TG + +
Sbjct: 7 PILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTR-- 64
Query: 523 ISLDR---DKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKPVFRECSTYYP 579
+LDR Y+L V D + V + D NDN+P+FRE Y
Sbjct: 65 -TLDRETIATYQLYVETTDASG-------KTLEGPVPLEVIVIDQNDNRPIFRE-GPYIG 115
Query: 580 KVEEGAPNGSPVIKVHATDEDK--GVNGQVKYSIVQQPNQKGAK--FTVDEETGEVVT-- 633
V EG+P G+ V+++ A D D N ++Y+I QQ K + F +D E G++VT
Sbjct: 116 HVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVV 175
Query: 634 -NKVFDREGDDGKFVSVTIKATDQG--EPSLEGVCSFTVEITD 673
+ DRE + + I+A D + L G + T+ I D
Sbjct: 176 SPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVIDD 218
Score = 117 bits (294), Expect = 7e-30
Identities = 59/218 (27%), Positives = 85/218 (38%), Gaps = 38/218 (17%)
Query: 254 SQQVYTP-NVDEN--AGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQG 310
S V +P + EN V VV SD+ + ++
Sbjct: 1 SGIVVSPILIPENQRQPFPRDVGKVVDSDRPEGSKFRLT------------GKG-VDQDP 47
Query: 311 AGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGG--FSTSVELTIRVTDVND 368
GTF I +G V + + LD E + Y L V T D+ G V L + V D ND
Sbjct: 48 KGTFRINENTGSVSVTRTLDRETIAT---YQLYVETT-DASGKTLEGPVPLEVIVIDQND 103
Query: 369 NAPKFELPDYQAHNIDEDITTGTSILKVKATDAD--SGTNAEIEYHVSDDN--------F 418
N P F Y H + E TGT+++++ A DAD + NA + Y++ F
Sbjct: 104 NRPIFREGPYIGH-VMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMF 162
Query: 419 AVDSN-GVI---NNHKTLD-ADNNNAYYEFVITAKDKD 451
+D G I + LD N YE +I A+D
Sbjct: 163 YIDPEKGDIVTVVSPALLDRETLENPKYELIIEAQDMA 200
Score = 105 bits (264), Expect = 7e-26
Identities = 55/268 (20%), Positives = 81/268 (30%), Gaps = 83/268 (30%)
Query: 117 NAPPNTPVFTLQARDPDSDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDPFQLDQE- 173
P V + D + V G F ++E +G V T LD+E
Sbjct: 15 RQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRT----LDRET 70
Query: 174 ---YVLYVKAEDQNGRKDERKFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDTEY 230
Y LYV+ D +G
Sbjct: 71 IATYQLYVETTDASG--------------------------------------------- 85
Query: 231 PSMTGTATVRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKD---GDNVSI 287
++ G + + ++ND P F + Y +V E + T V + A D D DN
Sbjct: 86 KTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNA-- 143
Query: 288 ISVKAKSFADREIRYTLKAQ---GQGAGTFNIGPTSGIVKLAK---ELDFEDLRQPHVYS 341
+RY ++ Q F I P G + LD E L P Y
Sbjct: 144 -----------LLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPALLDRETLENP-KYE 191
Query: 342 LIVTATEDSGG----FSTSVELTIRVTD 365
LI+ A D G + + TI + D
Sbjct: 192 LIIEAQ-DMAGLDVGLTGTATATIVIDD 218
Score = 70.5 bits (173), Expect = 8e-14
Identities = 28/111 (25%), Positives = 41/111 (36%), Gaps = 17/111 (15%)
Query: 89 VIIHVKDVNDESPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDSDHN----IHYFIV- 143
+ + V D ND P F P V +P T V + A D D + Y I
Sbjct: 94 LEVIVIDQNDNRPIFREGP--YIGHVMEGSPTGTTVMRMTAFDADDPATDNALLRYNIRQ 151
Query: 144 ---RDRTGGRFEVDERSGVVRTRGTDPFQLDQE------YVLYVKAEDQNG 185
+ F +D G + T + LD+E Y L ++A+D G
Sbjct: 152 QTPDKPSPNMFYIDPEKGDIVTVVSPA-LLDRETLENPKYELIIEAQDMAG 201
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 142 bits (361), Expect = 5e-39
Identities = 51/223 (22%), Positives = 81/223 (36%), Gaps = 41/223 (18%)
Query: 581 VEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQP--NQKGAKFTVDEETGEVVTNKVFD 638
E G + ++ +V YSI Q F ++ ETG + + D
Sbjct: 9 CPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLD 67
Query: 639 REGDDGKFVSVTIKATDQGEPSLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGT 698
RE + A ++E + +TD NDN P F ++ + +V + A GT
Sbjct: 68 REAIA--KYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGT 125
Query: 699 NILRVSASDEDAD---NNGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLDVYYYIVD 755
++++VSA+D D D N AI YT+ +
Sbjct: 126 SVMKVSATDADDDVNTYNAAIAYTIVS--------------------------------Q 153
Query: 756 SPRNEGKDFFEINLQSGEVFTKV-VFDREKQGAYALEVEARDG 797
P K+ F +N +G + DRE Y L V+A D
Sbjct: 154 DPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADL 196
Score = 137 bits (346), Expect = 7e-37
Identities = 58/226 (25%), Positives = 83/226 (36%), Gaps = 38/226 (16%)
Query: 471 AIYGPIHIRENVTVSTVVTSVKARF--------------GFVGGSTSSGQFVIEDITGVI 516
I I EN + G G F+IE TG +
Sbjct: 3 VIA-AISCPENEKGEFPKN-LVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWL 60
Query: 517 RLNSKSISLDR---DKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKPVFRE 573
++ LDR KY L AV +V+ +TD NDN+P F +
Sbjct: 61 KVTQ---PLDREAIAKYILYSHAVSSN-------GEAVEDPMEIVITVTDQNDNRPEFTQ 110
Query: 574 CSTYYPKVEEGAPNGSPVIKVHATDEDKGV---NGQVKYSIVQQPNQKGAK--FTVDEET 628
+ V EGA G+ V+KV ATD D V N + Y+IV Q + K FTV+ +T
Sbjct: 111 -EVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDT 169
Query: 629 GEVVT-NKVFDREGDDGKFVSVTIKATDQGEPSLEGVCSFTVEITD 673
G + DRE ++ ++A D L + + D
Sbjct: 170 GVISVLTSGLDRE--SYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 125 bits (317), Expect = 5e-33
Identities = 56/213 (26%), Positives = 87/213 (40%), Gaps = 37/213 (17%)
Query: 257 VYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQG---AGT 313
+ + EN +V + D + ++ Y++ QG G
Sbjct: 4 IAAISCPENE-KGEFPKNLVQIKSNRDK------------ETKVFYSITGQGADKPPVGV 50
Query: 314 FNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGG--FSTSVELTIRVTDVNDNAP 371
F I +G +K+ + LD E + + Y L A S G +E+ I VTD NDN P
Sbjct: 51 FIIERETGWLKVTQPLDREAIAK---YILYSHAV-SSNGEAVEDPMEIVITVTDQNDNRP 106
Query: 372 KFELPDYQAHNIDEDITTGTSILKVKATDADSGT---NAEIEYHVSDDN--------FAV 420
+F ++ + E GTS++KV ATDAD NA I Y + + F V
Sbjct: 107 EFTQEVFEGS-VAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTV 165
Query: 421 DSN-GVIN-NHKTLDADNNNAYYEFVITAKDKD 451
+ + GVI+ LD + + Y V+ A D
Sbjct: 166 NRDTGVISVLTSGLDRE-SYPTYTLVVQAADLQ 197
Score = 103 bits (260), Expect = 2e-25
Identities = 57/274 (20%), Positives = 90/274 (32%), Gaps = 81/274 (29%)
Query: 111 QAVVQLNAP---PNTPVFTLQARDPDSDHN--IHYFI----VRDRTGGRFEVDERSGVVR 161
+ ++ P L + D + Y I G F ++ +G ++
Sbjct: 2 WVIAAISCPENEKGEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLK 61
Query: 162 TRGTDPFQLDQE----YVLYVKAEDQNGRKDERKFQSTPEERLSIVGGKRAPQFYMPSYE 217
LD+E Y+LY A NG
Sbjct: 62 VTQP----LDREAIAKYILYSHAVSSNG-------------------------------- 85
Query: 218 AEIPENQKKDTEYPSMTGTATVRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVA 277
++ + I ++ND P+F+Q+V+ +V E A P T V V A
Sbjct: 86 -------------EAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSA 132
Query: 278 SDKDGDNVSIISVKAKSFADREIRYTLKAQ---GQGAGTFNIGPTSG-IVKLAKELDFED 333
+D D D + + I YT+ +Q F + +G I L LD E
Sbjct: 133 TDADDDVNTYNA---------AIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRES 183
Query: 334 LRQPHVYSLIVTATEDSGG--FSTSVELTIRVTD 365
Y+L+V A D G ST+ + I V D
Sbjct: 184 YPT---YTLVVQAA-DLQGEGLSTTAKAVITVKD 213
Score = 67.4 bits (165), Expect = 9e-13
Identities = 35/115 (30%), Positives = 45/115 (39%), Gaps = 18/115 (15%)
Query: 84 TDNQRVIIHVKDVNDESPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDSDHN-----I 138
D ++I V D ND P F + V A P T V + A D D D N I
Sbjct: 89 EDPMEIVITVTDQNDNRPEFTQEVF--EGSVAEGAVPGTSVMKVSATDADDDVNTYNAAI 146
Query: 139 HYFIV----RDRTGGRFEVDERSGVVRTRGTDPFQLDQE----YVLYVKAEDQNG 185
Y IV F V+ +GV+ + LD+E Y L V+A D G
Sbjct: 147 AYTIVSQDPELPHKNMFTVNRDTGVISVLTS---GLDRESYPTYTLVVQAADLQG 198
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 140 bits (356), Expect = 2e-38
Identities = 50/217 (23%), Positives = 86/217 (39%), Gaps = 31/217 (14%)
Query: 472 IYGPIHIRENVTVS--TVVTSVKARFG------FVGGSTSSGQFVIEDITGVIRLNSKSI 523
I+ +HIRE + V + + G + G +++ F ++ G I
Sbjct: 3 IWNRMHIREEIDSPLPHHVGKLTSSVGNKNAMYIIEGESANTIFKVQGYDGDIYAFE--- 59
Query: 524 SLDR---DKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKPVFRECSTYYPK 580
LDR +YEL +D ++S+ + ++ ++D+NDN P+F + +
Sbjct: 60 RLDREKKAEYELTAHIIDRR-----NNRSL-EPPSKFIIKVSDINDNAPIFVQ-KIFNGS 112
Query: 581 VEEGAPNGSPVIKVHATDED---KGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTNKVF 637
V E + G+ V KV A D D + V Y I++ FTVD+
Sbjct: 113 VPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNEY----FTVDDSGVIFTARADL 168
Query: 638 DREGDDGKFVSVTIKATDQ-GEPSLEGVCSFTVEITD 673
DRE + +KA D G + + +TD
Sbjct: 169 DRE--SQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203
Score = 135 bits (341), Expect = 2e-36
Identities = 44/221 (19%), Positives = 83/221 (37%), Gaps = 50/221 (22%)
Query: 582 EEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTNKVFDREG 641
E +P V K+ ++ N Y I + F V G++ + DRE
Sbjct: 12 EIDSPLPHHVGKLTSSVG----NKNAMYIIEGESA--NTIFKVQGYDGDIYAFERLDREK 65
Query: 642 DDGKFVSVTIKATDQ-GEPSLEGVCSFTVEITDVNDNPPLFDRQKYVENVKQDASIGTNI 700
+T D+ SLE F ++++D+NDN P+F ++ + +V + + +GT++
Sbjct: 66 KA--EYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSV 123
Query: 701 LRVSASDEDADN---NGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLDVYYYIVDSP 757
+V+A D D + + Y +
Sbjct: 124 TKVTAEDADDPTVAGHATVTYQII------------------------------------ 147
Query: 758 RNEGKDFFEINLQSGEVFTKVVFDREKQGAYALEVEARDGA 798
+G ++F ++ + DRE Q AY + V+A+D
Sbjct: 148 --KGNEYFTVDDSGVIFTARADLDRESQSAYEIIVKAKDAL 186
Score = 122 bits (309), Expect = 5e-32
Identities = 44/207 (21%), Positives = 77/207 (37%), Gaps = 35/207 (16%)
Query: 257 VYTP-NVDEN--AGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGAGT 313
++ ++ E + V + +S + Y ++ +
Sbjct: 3 IWNRMHIREEIDSPLPHHVGKLTSSVGNK----------------NAMYIIEGESAN-TI 45
Query: 314 FNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGF---STSVELTIRVTDVNDNA 370
F + G + + LD E + Y L D + I+V+D+NDNA
Sbjct: 46 FKVQGYDGDIYAFERLDREKKAE---YELTAHII-DRRNNRSLEPPSKFIIKVSDINDNA 101
Query: 371 PKFELPDYQAHNIDEDITTGTSILKVKATDADS---GTNAEIEYHVSDDN--FAVDSN-G 424
P F + ++ E GTS+ KV A DAD +A + Y + N F VD +
Sbjct: 102 PIFVQKIFNG-SVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQIIKGNEYFTVDDSGV 160
Query: 425 VINNHKTLDADNNNAYYEFVITAKDKD 451
+ LD + + + YE ++ AKD
Sbjct: 161 IFTARADLDRE-SQSAYEIIVKAKDAL 186
Score = 118 bits (297), Expect = 2e-30
Identities = 48/262 (18%), Positives = 80/262 (30%), Gaps = 71/262 (27%)
Query: 111 QAVVQLNAPPNTPVFTLQARDPDSDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDPFQL 170
+ ++ P + + N Y I + F+V G + L
Sbjct: 6 RMHIREEIDSPLPHHVGKLTSSVGNKNAMYIIEGESANTIFKVQGYDGDIYAFER----L 61
Query: 171 DQE----YVLYVKAEDQNGRKDERKFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKK 226
D+E Y L D+
Sbjct: 62 DREKKAEYELTAHIIDRRNN---------------------------------------- 81
Query: 227 DTEYPSMTGTATVRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVS 286
S+ + I + ND P F Q+++ +V E + T VT V A D D V+
Sbjct: 82 ----RSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVA 137
Query: 287 IISVKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTA 346
+ + Y + +G F + + I +LD E Y +IV A
Sbjct: 138 GHA---------TVTYQII---KGNEYFTVDDSGVIFTARADLDRESQSA---YEIIVKA 182
Query: 347 TEDSGG---FSTSVELTIRVTD 365
D+ G S++ + IR+TD
Sbjct: 183 K-DALGLTGESSTATVIIRLTD 203
Score = 67.7 bits (166), Expect = 5e-13
Identities = 28/106 (26%), Positives = 41/106 (38%), Gaps = 17/106 (16%)
Query: 89 VIIHVKDVNDESPYFINRPLPMQAVVQLNAPPNTPVFTLQARDPDSDHN-----IHYFIV 143
II V D+ND +P F+ + V + T V + A D D + Y I+
Sbjct: 90 FIIKVSDINDNAPIFVQK--IFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVTYQII 147
Query: 144 RDRTGGRFEVDERSGVVRTRGTDPFQLD----QEYVLYVKAEDQNG 185
+ F VD+ + R LD Y + VKA+D G
Sbjct: 148 KG--NEYFTVDDSGVIFTARA----DLDRESQSAYEIIVKAKDALG 187
Score = 41.9 bits (99), Expect = 3e-04
Identities = 20/121 (16%), Positives = 34/121 (28%), Gaps = 44/121 (36%)
Query: 688 ENVKQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPL 747
E D+ + ++ ++++S N +Y + F++Q G I + L
Sbjct: 11 EE--IDSPLPHHVGKLTSSVG----NKNAMYIIEGES---ANTIFKVQGYDGDIYAFERL 61
Query: 748 DVYYYIVDSPRNEGKDFFEINLQSGEVFTKVVFDREKQGAYALEVEARD--GAPSARPNS 805
D REK+ Y L D S P S
Sbjct: 62 D---------------------------------REKKAEYELTAHIIDRRNNRSLEPPS 88
Query: 806 D 806
Sbjct: 89 K 89
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 130 bits (329), Expect = 8e-36
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 3/121 (2%)
Query: 559 VFITDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQK 618
+ NDN P F + S Y + E + G+P++++ A D D GVNGQ++Y
Sbjct: 2 SSGSSGNDNSPRFEK-SVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESV 60
Query: 619 GAKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEGVCSFTVEITDVNDNP 678
+DE +G + DRE + + T+ A D+G+P + + I D NDN
Sbjct: 61 RRLLRLDETSGWLSVLHRIDRE--EVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNV 118
Query: 679 P 679
P
Sbjct: 119 P 119
Score = 92.9 bits (232), Expect = 1e-22
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 16/120 (13%)
Query: 361 IRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSGTNAEIEYHVSDDN--- 417
+ NDN+P+FE Y+A ++ E+ GT IL+++A D D G N +IEY
Sbjct: 2 SSGSSGNDNSPRFEKSVYEA-DLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESV 60
Query: 418 ---FAVDSN-GVINNHKTLDADNNNAYYEFVITAKDK-------DVDVELDVVDRNNKPP 466
+D G ++ +D + N F + A+D+ V L++ D N+ P
Sbjct: 61 RRLLRLDETSGWLSVLHRIDREEVNQ-LRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119
Score = 91.4 bits (228), Expect = 4e-22
Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 21/129 (16%)
Query: 247 NDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKD-GDNVSIISVKAKSFADREIRYTL- 304
ND P+F + VY ++ EN+ P T + + A+D D G N +I Y
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVN-------------GQIEYVFG 54
Query: 305 KAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGF--STSVELTIR 362
A + TSG + + +D E++ V A D G + + +
Sbjct: 55 AATESVRRLLRLDETSGWLSVLHRIDREEVN---QLRFTVMAR-DRGQPPKTDKATVVLN 110
Query: 363 VTDVNDNAP 371
+ D NDN P
Sbjct: 111 IKDENDNVP 119
Score = 86.8 bits (216), Expect = 1e-20
Identities = 27/133 (20%), Positives = 45/133 (33%), Gaps = 34/133 (25%)
Query: 669 VEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMD 728
+ NDN P F++ Y ++ ++++ GT IL++ A+D D NG I Y +
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFG-AATESV 60
Query: 729 LEYFEIQPESGWIVLKKPLDVYYYIVDSPRNEGKDFFEINLQSGEVFTKVVFDREKQGAY 788
+ SGW+ + + DRE+
Sbjct: 61 RRLLRLDETSGWLSVLHRI---------------------------------DREEVNQL 87
Query: 789 ALEVEARDGAPSA 801
V ARD
Sbjct: 88 RFTVMARDRGQPP 100
Score = 59.4 bits (145), Expect = 6e-11
Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 26/127 (20%)
Query: 458 VVDRNNKPPLWDNAIYGPIHIRENVTVSTVVTSVKAR-----------FGFVGGSTSSGQ 506
N+ P ++ ++Y + EN T + ++A + F + S +
Sbjct: 4 GSSGNDNSPRFEKSVYE-ADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRR 62
Query: 507 -FVIEDITGVIRLNSKSISLDR---DKYELNVTAVDDGACCANGDQSVHTATAVVVVFIT 562
+++ +G + + +DR ++ V A D G Q T A VV+ I
Sbjct: 63 LLRLDETSGWLSVLH---RIDREEVNQLRFTVMARDRG-------QPPKTDKATVVLNIK 112
Query: 563 DVNDNKP 569
D NDN P
Sbjct: 113 DENDNVP 119
Score = 58.3 bits (142), Expect = 2e-10
Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 14/99 (14%)
Query: 93 VKDVNDESPYFINRPLPMQAV--VQL--NAPPNTPVFTLQARDPDSDHN--IHYFI--VR 144
ND SP F ++V L N+ P TP+ L+A D D N I Y
Sbjct: 4 GSSGNDNSPRFE------KSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAAT 57
Query: 145 DRTGGRFEVDERSGVVRTRGTDPFQLDQEYVLYVKAEDQ 183
+ +DE SG + + + V A D+
Sbjct: 58 ESVRRLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDR 96
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 110 bits (278), Expect = 6e-29
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 6/118 (5%)
Query: 559 VFITDVNDNKPVFRECSTYYPKVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQK 618
+ NDN+PVF+E + E AP G+ VI++HATD D G N +++Y Q
Sbjct: 2 SSGSSGNDNRPVFKE-GQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPA 60
Query: 619 GAK-FTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQGEPSLEGVCSFTVEITDVN 675
+ F ++ TG + + DRE + VT+ A+D S + T+ +TDVN
Sbjct: 61 TKRLFALNNTTGLITVQRSLDRE--ETAIHKVTVLASDGS--STPARATVTINVTDVN 114
Score = 90.2 bits (225), Expect = 9e-22
Identities = 27/135 (20%), Positives = 51/135 (37%), Gaps = 34/135 (25%)
Query: 669 VEITDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMD 728
+ NDN P+F + ++ ++A +GT+++++ A+D D +N I Y A
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61
Query: 729 LEYFEIQPESGWIVLKKPLDVYYYIVDSPRNEGKDFFEINLQSGEVFTKVVFDREKQGAY 788
F + +G I +++ L DRE+ +
Sbjct: 62 KRLFALNNTTGLITVQRSL---------------------------------DREETAIH 88
Query: 789 ALEVEARD-GAPSAR 802
+ V A D + AR
Sbjct: 89 KVTVLASDGSSTPAR 103
Score = 89.4 bits (223), Expect = 2e-21
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 15/115 (13%)
Query: 361 IRVTDVNDNAPKFELPDYQAHNIDEDITTGTSILKVKATDADSGTNAEIEY----HVSDD 416
+ NDN P F+ + +I E+ GTS++++ ATDAD G+NAEI Y V+
Sbjct: 2 SSGSSGNDNRPVFKEGQVEV-HIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPA 60
Query: 417 N---FAVDSN-GVINNHKTLDADNNNAYYEFVITAKDK-----DVDVELDVVDRN 462
FA+++ G+I ++LD + ++ + A D V ++V D N
Sbjct: 61 TKRLFALNNTTGLITVQRSLDREETAI-HKVTVLASDGSSTPARATVTINVTDVN 114
Score = 81.7 bits (203), Expect = 8e-19
Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 20/124 (16%)
Query: 247 NDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKD-GDNVSIISVKAKSFADREIRYTL- 304
ND P F + ++ ENA T V + A+D D G N EIRY
Sbjct: 8 NDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSN-------------AEIRYIFG 54
Query: 305 -KAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTSVELTIRV 363
+ F + T+G++ + + LD E+ ++ + V A+ D +TI V
Sbjct: 55 AQVAPATKRLFALNNTTGLITVQRSLDREETA---IHKVTVLAS-DGSSTPARATVTINV 110
Query: 364 TDVN 367
TDVN
Sbjct: 111 TDVN 114
Score = 57.9 bits (141), Expect = 2e-10
Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 15/104 (14%)
Query: 91 IHVKDVNDESPYFINRPLPMQAV--VQL--NAPPNTPVFTLQARDPDSDHN--IHYFI-- 142
ND P F + V + NAP T V L A D D N I Y
Sbjct: 2 SSGSSGNDNRPVFK------EGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGA 55
Query: 143 -VRDRTGGRFEVDERSGVVRTRGTDPFQLDQEYVLYVKAEDQNG 185
V T F ++ +G++ + + + + + V A D +
Sbjct: 56 QVAPATKRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSS 99
Score = 52.5 bits (127), Expect = 1e-08
Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 29/124 (23%)
Query: 458 VVDRNNKPPLWDNAIYGPIHIRENVTVSTVVTSVKAR-------------FGFVGGSTSS 504
N+ P++ +HI EN V T V + A FG +
Sbjct: 4 GSSGNDNRPVFKEGQV-EVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK 62
Query: 505 GQFVIEDITGVIRLNSKSISLDR---DKYELNVTAVDDGACCANGDQSVHTATAVVVVFI 561
F + + TG+I + LDR +++ V A D + A A V + +
Sbjct: 63 RLFALNNTTGLITVQRS---LDREETAIHKVTVLASDGSS---------TPARATVTINV 110
Query: 562 TDVN 565
TDVN
Sbjct: 111 TDVN 114
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 95.9 bits (239), Expect = 1e-23
Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 575 STYYPKVEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAK--FTVDEETGEVV 632
+ + E +P+ K+H +D + ++ Y + + F +++TGE+
Sbjct: 15 APVALREGEDLSKKNPIAKIH-SDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELN 73
Query: 633 TNKVFDREGDDGKFVSVTIKATDQGEPSLEGVCSFTVEITDVNDNPPLFDR 683
+ DRE F +T A D ++E +++ D+NDN P+F +
Sbjct: 74 VTSILDREETP--FFLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQ 122
Score = 74.3 bits (183), Expect = 4e-16
Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 22/118 (18%)
Query: 262 VDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQG---AGTFNIGP 318
E+ + + + + + +I Y +G G F
Sbjct: 21 EGEDLSKKNPIAKIHSDLAEERGL-------------KITYKYTGKGITEPPFGIFVFNK 67
Query: 319 TSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGG--FSTSVELTIRVTDVNDNAPKFE 374
+G + + LD E + + L A D+ G +EL I+V D+NDN P F
Sbjct: 68 DTGELNVTSILDRE---ETPFFLLTGYAL-DARGNNVEKPLELRIKVLDINDNEPVFT 121
Score = 60.0 bits (146), Expect = 4e-11
Identities = 23/117 (19%), Positives = 43/117 (36%), Gaps = 28/117 (23%)
Query: 475 PIHIREN--VTVSTVVTSVKA----------RFGFVG---GSTSSGQFVIEDITGVIRLN 519
P+ +RE ++ + + + + + G G FV TG + +
Sbjct: 16 PVALREGEDLSKKNPIAKIHSDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVT 75
Query: 520 SKSISLDR---DKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKPVFRE 573
S LDR + L A+D + + + + D+NDN+PVF +
Sbjct: 76 S---ILDREETPFFLLTGYALDAR-------GNNVEKPLELRIKVLDINDNEPVFTQ 122
Score = 51.2 bits (123), Expect = 5e-08
Identities = 17/121 (14%), Positives = 31/121 (25%), Gaps = 38/121 (31%)
Query: 688 ENVKQDASIGTNILRVSASDEDADNNGAIVYTLSAPY-NQMDLEYFEIQPESGWIVLKKP 746
E +D S I ++ SD + I Y + + F ++G + +
Sbjct: 21 EG--EDLSKKNPIAKIH-SDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSI 77
Query: 747 LDVYYYIVDSPRNEGKDFFEINLQSGEVFTKVVFDREKQGAYALEVEARD-GAPSARPNS 805
L DRE+ + L A D +
Sbjct: 78 L---------------------------------DREETPFFLLTGYALDARGNNVEKPL 104
Query: 806 D 806
+
Sbjct: 105 E 105
Score = 50.0 bits (120), Expect = 1e-07
Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 19/98 (19%)
Query: 385 EDITTGTSILKVKATDADSGTNAEIEYHVSDDN--------FAVDSN-GVINNHKTLDAD 435
ED++ I K+ +D +I Y + F + + G +N LD +
Sbjct: 23 EDLSKKNPIAKIH-SDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDRE 81
Query: 436 NNNAYYEFVITAKDKD-------VDVELDVVDRN-NKP 465
++ A D +++ + V+D N N+P
Sbjct: 82 -ETPFFLLTGYALDARGNNVEKPLELRIKVLDINDNEP 118
Score = 46.6 bits (111), Expect = 2e-06
Identities = 23/157 (14%), Positives = 43/157 (27%), Gaps = 60/157 (38%)
Query: 109 PMQAVVQLNAPPNTPVFTLQARDPDSDHN--IHYFI----VRDRTGGRFEVDERSGVVRT 162
P+ + P+ + + D + I Y + + G F ++ +G +
Sbjct: 16 PVALREGEDLSKKNPIAKIHS-DLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNV 74
Query: 163 RGTDPFQLDQE----YVLYVKAEDQNGRKDERKFQSTPEERLSIVGGKRAPQFYMPSYEA 218
LD+E ++L A D G
Sbjct: 75 TS----ILDREETPFFLLTGYALDARG--------------------------------- 97
Query: 219 EIPENQKKDTEYPSMTGTATVRIYTKNKNDEEPKFSQ 255
++ +RI + ND EP F+Q
Sbjct: 98 ------------NNVEKPLELRIKVLDINDNEPVFTQ 122
Score = 28.1 bits (63), Expect = 5.9
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 89 VIIHVKDVNDESPYF 103
+ I V D+ND P F
Sbjct: 106 LRIKVLDINDNEPVF 120
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 95.0 bits (237), Expect = 1e-23
Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 5/103 (4%)
Query: 581 VEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQP--NQKGAKFTVDEETGEVVTNKVFD 638
+ E + G ++ + N ++YS+ F ++ +G++ K D
Sbjct: 11 LPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLD 69
Query: 639 REGDDGKFVSVTIKATDQGEPSLEGVCSFTVEITDVNDNPPLF 681
RE + A D +E + + D+NDN P F
Sbjct: 70 RELIA--RFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 79.6 bits (197), Expect = 4e-18
Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 22/118 (18%)
Query: 261 NVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQG---AGTFNIG 317
N+ EN+ +V D + +RY++ G G F I
Sbjct: 10 NLPENS-RGPFPQELVRIRSGRDK------------NLSLRYSVTGPGADQPPTGIFIIN 56
Query: 318 PTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGG--FSTSVELTIRVTDVNDNAPKF 373
P SG + + K LD E + + + L A D G +++ I V D+NDN P+F
Sbjct: 57 PISGQLSVTKPLDRELIAR---FHLRAHAV-DINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 59.2 bits (144), Expect = 5e-11
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 26/113 (23%)
Query: 475 PIHIRENVTVSTV--VTSVKA--------RFGFVGGSTSS---GQFVIEDITGVIRLNSK 521
PI++ EN + +++ R+ G G F+I I+G + +
Sbjct: 8 PINLPENSRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTK- 66
Query: 522 SISLDR---DKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKPVF 571
LDR ++ L AVD V +V+ + D+NDN+P F
Sbjct: 67 --PLDRELIARFHLRAHAVD------INGNQV-ENPIDIVINVIDMNDNRPEF 110
Score = 53.8 bits (130), Expect = 4e-09
Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 19/101 (18%)
Query: 382 NIDEDITTGTSILKVKATDADSGTNAEIEYHVSDDN--------FAVDSN-GVINNHKTL 432
N+ E+ + G ++ + N + Y V+ F ++ G ++ K L
Sbjct: 10 NLPEN-SRGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL 68
Query: 433 DADNNNAYYEFVITAKDKD-------VDVELDVVDRN-NKP 465
D + A + A D + +D+ ++V+D N N+P
Sbjct: 69 DRE-LIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRP 108
Score = 52.7 bits (127), Expect = 1e-08
Identities = 20/102 (19%), Positives = 30/102 (29%), Gaps = 34/102 (33%)
Query: 697 GTNILRVSASDEDADNNGAIVYTLSAPY-NQMDLEYFEIQPESGWIVLKKPLDVYYYIVD 755
G + D N ++ Y+++ P +Q F I P SG + + KPL
Sbjct: 17 GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPL-------- 68
Query: 756 SPRNEGKDFFEINLQSGEVFTKVVFDREKQGAYALEVEARDG 797
DRE + L A D
Sbjct: 69 -------------------------DRELIARFHLRAHAVDI 85
Score = 45.3 bits (108), Expect = 4e-06
Identities = 16/77 (20%), Positives = 23/77 (29%), Gaps = 14/77 (18%)
Query: 120 PNTPVFTLQARDPDSDHN--IHYFI----VRDRTGGRFEVDERSGVVRTRGTDPFQLDQE 173
L D N + Y + G F ++ SG + LD+E
Sbjct: 16 RGPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP----LDRE 71
Query: 174 ----YVLYVKAEDQNGR 186
+ L A D NG
Sbjct: 72 LIARFHLRAHAVDINGN 88
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor,
lipoprotein, membrane; 1.81A {Mus musculus}
Length = 100
Score = 82.0 bits (203), Expect = 4e-19
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
Query: 581 VEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTNKVFDRE 640
+ P V KV +D +G ++ V Q + F ++E TG V + DRE
Sbjct: 12 ENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKG--TFRINENTGSVSVTRTLDRE 69
Query: 641 GDDGKFVSVTIKATDQGEPSLEGVCSFTVEITD 673
+ ++ TD +LEG V + D
Sbjct: 70 TIA--TYQLYVETTDASGKTLEGPVPLEVIVID 100
Score = 53.9 bits (130), Expect = 3e-09
Identities = 28/114 (24%), Positives = 39/114 (34%), Gaps = 22/114 (19%)
Query: 257 VYTP-NVDENAGPN--TLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGAGT 313
V +P + EN V VV SD+ + + GT
Sbjct: 4 VVSPILIPENQRQPFPRDVGKVVDSDRPEGSKF------------RLTGKG-VDQDPKGT 50
Query: 314 FNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGG--FSTSVELTIRVTD 365
F I +G V + + LD E + Y L V T D+ G V L + V D
Sbjct: 51 FRINENTGSVSVTRTLDRETIAT---YQLYVETT-DASGKTLEGPVPLEVIVID 100
Score = 53.5 bits (129), Expect = 4e-09
Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 13/88 (14%)
Query: 385 EDITTGTSILKVKATDADSGTNAEIEYHVSDDN----FAVDSN-GVINNHKTLDADNNNA 439
+ + KV +D G+ + D + F ++ N G ++ +TLD + A
Sbjct: 14 QRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRTLDRE-TIA 72
Query: 440 YYEFVITAKDKD-------VDVELDVVD 460
Y+ + D V +E+ V+D
Sbjct: 73 TYQLYVETTDASGKTLEGPVPLEVIVID 100
Score = 53.5 bits (129), Expect = 5e-09
Identities = 22/110 (20%), Positives = 28/110 (25%), Gaps = 38/110 (34%)
Query: 688 ENVKQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPL 747
EN Q ++ +V SD + +
Sbjct: 12 EN--QRQPFPRDVGKVVDSDRPEGSKFRLTGK---------------------------- 41
Query: 748 DVYYYIVDSPRNEGKDFFEINLQSGEVFTKVVFDREKQGAYALEVEARDG 797
VD K F IN +G V DRE Y L VE D
Sbjct: 42 -----GVDQD---PKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDA 83
Score = 49.3 bits (118), Expect = 1e-07
Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 10/76 (13%)
Query: 117 NAPPNTPVFTLQARDPDSDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDPFQLDQE- 173
P V + D + V G F ++E +G V T LD+E
Sbjct: 15 RQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTRT----LDRET 70
Query: 174 ---YVLYVKAEDQNGR 186
Y LYV+ D +G+
Sbjct: 71 IATYQLYVETTDASGK 86
Score = 42.4 bits (100), Expect = 4e-05
Identities = 22/104 (21%), Positives = 33/104 (31%), Gaps = 25/104 (24%)
Query: 475 PIHIRENVTVS--TVVTSVKAR------FGFVGGS----TSSGQFVIEDITGVIRLNSKS 522
PI I EN V V + G G F I + TG + +
Sbjct: 7 PILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTGSVSVTR-- 64
Query: 523 ISLDR---DKYELNVTAVDDGACCANGDQSVHTATAVVVVFITD 563
+LDR Y+L V D +++ + V + D
Sbjct: 65 -TLDRETIATYQLYVETTD------ASGKTL-EGPVPLEVIVID 100
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 78.6 bits (194), Expect = 7e-18
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 582 EEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTNKVFDREG 641
+ P V +V +D G ++ V Q + F ++E +GEV K DRE
Sbjct: 12 NQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKG--IFKINENSGEVSVTKALDREA 69
Query: 642 DDGKFVSVTIKATDQGEPSLEGVCSFTVEITD 673
+ + ++ TD+ ++EG + + D
Sbjct: 70 IP-SYQ-LQVETTDENGKTIEGPVDLEILVID 99
Score = 54.7 bits (132), Expect = 2e-09
Identities = 28/109 (25%), Positives = 39/109 (35%), Gaps = 21/109 (19%)
Query: 261 NVDENAGPN--TLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGAGTFNIGP 318
++ EN +V VV SD+ + ++ + G F I
Sbjct: 8 SIPENQRIPFPKIVGRVVVSDRIPGSKI------------KLYGKG-VDQEPKGIFKINE 54
Query: 319 TSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGG--FSTSVELTIRVTD 365
SG V + K LD E + Y L V T D G V+L I V D
Sbjct: 55 NSGEVSVTKALDREAIPS---YQLQVETT-DENGKTIEGPVDLEILVID 99
Score = 52.0 bits (125), Expect = 1e-08
Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 13/89 (14%)
Query: 384 DEDITTGTSILKVKATDADSGTNAEIEYHVSDDN----FAVDSN-GVINNHKTLDADNNN 438
++ I + +V +D G+ ++ D F ++ N G ++ K LD +
Sbjct: 12 NQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKALDRE-AI 70
Query: 439 AYYEFVITAKDKD-------VDVELDVVD 460
Y+ + D++ VD+E+ V+D
Sbjct: 71 PSYQLQVETTDENGKTIEGPVDLEILVID 99
Score = 50.1 bits (120), Expect = 7e-08
Identities = 22/110 (20%), Positives = 31/110 (28%), Gaps = 38/110 (34%)
Query: 688 ENVKQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPL 747
EN Q + RV SD + + +Q F+I SG + + K L
Sbjct: 11 EN--QRIPFPKIVGRVVVSDRIPGSKIKLYGKGV---DQEPKGIFKINENSGEVSVTKAL 65
Query: 748 DVYYYIVDSPRNEGKDFFEINLQSGEVFTKVVFDREKQGAYALEVEARDG 797
DRE +Y L+VE D
Sbjct: 66 ---------------------------------DREAIPSYQLQVETTDE 82
Score = 49.3 bits (118), Expect = 1e-07
Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 10/73 (13%)
Query: 119 PPNTPVFTLQARDPDSDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDPFQLDQE--- 173
P V + D ++ V G F+++E SG V LD+E
Sbjct: 16 PFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTKA----LDREAIP 71
Query: 174 -YVLYVKAEDQNG 185
Y L V+ D+NG
Sbjct: 72 SYQLQVETTDENG 84
Score = 42.0 bits (99), Expect = 5e-05
Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 25/104 (24%)
Query: 475 PIHIREN--VTVSTVVTSVKAR----------FGFVGGSTSSGQFVIEDITGVIRLNSKS 522
I I EN + +V V +G G F I + +G + +
Sbjct: 6 SISIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSGEVSVTK-- 63
Query: 523 ISLDR---DKYELNVTAVDDGACCANGDQSVHTATAVVVVFITD 563
+LDR Y+L V D+ + + + D
Sbjct: 64 -ALDREAIPSYQLQVETTDEN-------GKTIEGPVDLEILVID 99
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 75.2 bits (185), Expect = 1e-16
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
Query: 581 VEEGAPNGSP--VIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTNKVFD 638
+ E P V KV ++ +G ++ V Q + F ++E +G+V + D
Sbjct: 9 IPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKG--IFRINEISGDVSVTRPLD 66
Query: 639 REGDDGKFVSVTIKATDQGEPSLEGVCSFTVEITD 673
RE + ++ TD ++G + + D
Sbjct: 67 REAIA--NYELEVEVTDLSGKIIDGPVRLDISVID 99
Score = 52.8 bits (127), Expect = 8e-09
Identities = 27/116 (23%), Positives = 34/116 (29%), Gaps = 21/116 (18%)
Query: 254 SQQVYTPNVDENAGPN--TLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGA 311
S + EN P V V+ S+ +
Sbjct: 1 SILATPILIPENQRPPFPRSVGKVIRSEGTEGAKF------------RLSGKG-VDQDPK 47
Query: 312 GTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGG--FSTSVELTIRVTD 365
G F I SG V + + LD E + Y L V T D G V L I V D
Sbjct: 48 GIFRINEISGDVSVTRPLDREAIAN---YELEVEVT-DLSGKIIDGPVRLDISVID 99
Score = 47.8 bits (114), Expect = 5e-07
Identities = 16/89 (17%), Positives = 34/89 (38%), Gaps = 13/89 (14%)
Query: 384 DEDITTGTSILKVKATDADSGTNAEIEYHVSDDN----FAVDSN-GVINNHKTLDADNNN 438
++ S+ KV ++ G + D + F ++ G ++ + LD +
Sbjct: 12 NQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTRPLDRE-AI 70
Query: 439 AYYEFVITAKDKD-------VDVELDVVD 460
A YE + D V +++ V+D
Sbjct: 71 ANYELEVEVTDLSGKIIDGPVRLDISVID 99
Score = 46.6 bits (111), Expect = 1e-06
Identities = 21/110 (19%), Positives = 30/110 (27%), Gaps = 38/110 (34%)
Query: 688 ENVKQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPL 747
EN Q ++ +V S+ + +Q F I SG + + +PL
Sbjct: 11 EN--QRPPFPRSVGKVIRSEGTEGAKFRLSGKGV---DQDPKGIFRINEISGDVSVTRPL 65
Query: 748 DVYYYIVDSPRNEGKDFFEINLQSGEVFTKVVFDREKQGAYALEVEARDG 797
DRE Y LEVE D
Sbjct: 66 ---------------------------------DREAIANYELEVEVTDL 82
Score = 44.3 bits (105), Expect = 8e-06
Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 12/78 (15%)
Query: 117 NAPPNTP--VFTLQARDPDSDHN--IHYFIVRDRTGGRFEVDERSGVVRTRGTDPFQLDQ 172
N P P V + + + V G F ++E SG V LD+
Sbjct: 12 NQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTR----PLDR 67
Query: 173 E----YVLYVKAEDQNGR 186
E Y L V+ D +G+
Sbjct: 68 EAIANYELEVEVTDLSGK 85
Score = 37.4 bits (87), Expect = 0.002
Identities = 22/104 (21%), Positives = 31/104 (29%), Gaps = 25/104 (24%)
Query: 475 PIHIREN--VTVSTVVTSVKA------RFGFVGGSTSS----GQFVIEDITGVIRLNSKS 522
PI I EN V V + G G F I +I+G + +
Sbjct: 6 PILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGDVSVTR-- 63
Query: 523 ISLDR---DKYELNVTAVDDGACCANGDQSVHTATAVVVVFITD 563
LDR YEL V D + + + + D
Sbjct: 64 -PLDREAIANYELEVEVTDLS-------GKIIDGPVRLDISVID 99
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 74.3 bits (183), Expect = 2e-16
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 581 VEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTNKVFDRE 640
+EE + +D D+G +G +KY + + G FT+D+ TG++ + DRE
Sbjct: 11 LEEYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEGA--GIVFTIDDTTGDIHAIQRLDRE 67
Query: 641 GDDGKFVSVTIKATDQG-EPSLEGVCSFTVEITD 673
++ +A D+ +E F ++I D
Sbjct: 68 ERS--QYTLRAQALDRRTGRPMEPESEFIIKIQD 99
Score = 64.3 bits (157), Expect = 7e-13
Identities = 25/104 (24%), Positives = 38/104 (36%), Gaps = 19/104 (18%)
Query: 264 ENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIV 323
E G + L + SD D + I+Y L +G G F I T+G +
Sbjct: 13 EYTGTDPLYVGKLHSDMDRGD-------------GSIKYILSGEGAG-IVFTIDDTTGDI 58
Query: 324 KLAKELDFEDLRQPHVYSLIVTATEDSGG--FSTSVELTIRVTD 365
+ LD E + Y+L A + G E I++ D
Sbjct: 59 HAIQRLDRE---ERSQYTLRAQALDRRTGRPMEPESEFIIKIQD 99
Score = 48.5 bits (116), Expect = 2e-07
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 9/74 (12%)
Query: 117 NAPPNTPVFTLQARDPDSDHN-IHYFIVRDRTGGRFEVDERSGVVRTRGTDPFQLDQE-- 173
+ D D I Y + + G F +D+ +G + +LD+E
Sbjct: 14 YTGTDPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQ----RLDREER 69
Query: 174 --YVLYVKAEDQNG 185
Y L +A D+
Sbjct: 70 SQYTLRAQALDRRT 83
Score = 48.2 bits (115), Expect = 4e-07
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 379 QAHNIDEDITTGTSILKVKATDADSGTNAEIEYHVSDDN----FAVDSN-GVINNHKTLD 433
Q ++E T + +D D G + I+Y +S + F +D G I+ + LD
Sbjct: 7 QFFVLEEYTGTDPLYVGKLHSDMDRG-DGSIKYILSGEGAGIVFTIDDTTGDIHAIQRLD 65
Query: 434 ADNNNAYYEFVITAKDKDVDVELD 457
+ + Y A D+ ++
Sbjct: 66 RE-ERSQYTLRAQALDRRTGRPME 88
Score = 46.6 bits (111), Expect = 1e-06
Identities = 20/104 (19%), Positives = 28/104 (26%), Gaps = 37/104 (35%)
Query: 693 DASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLDVYYY 752
+ SD D + G+I Y LS F I +G I + L
Sbjct: 14 YTGTDPLYVGKLHSDMDRGD-GSIKYILSGEGAG---IVFTIDDTTGDIHAIQRL----- 64
Query: 753 IVDSPRNEGKDFFEINLQSGEVFTKVVFDREKQGAYALEVEARD 796
DRE++ Y L +A D
Sbjct: 65 ----------------------------DREERSQYTLRAQALD 80
Score = 40.5 bits (95), Expect = 2e-04
Identities = 18/103 (17%), Positives = 30/103 (29%), Gaps = 24/103 (23%)
Query: 475 PIHIRENVT-VSTVVTSVKA----------RFGFVGGSTSSGQFVIEDITGVIRLNSKSI 523
+ E T + ++ G + F I+D TG I
Sbjct: 7 QFFVLEEYTGTDPLYVGKLHSDMDRGDGSIKYILSGEG-AGIVFTIDDTTGDIHAIQ--- 62
Query: 524 SLDRDK---YELNVTAVDDGACCANGDQSVHTATAVVVVFITD 563
LDR++ Y L A+D + ++ I D
Sbjct: 63 RLDREERSQYTLRAQALD------RRTGRPMEPESEFIIKIQD 99
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 70.5 bits (173), Expect = 5e-15
Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 5/95 (5%)
Query: 581 VEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAK--FTVDEETGEVVTNKVFD 638
E P + +K G+V YSI Q F ++ ETG + + D
Sbjct: 13 CPENEKGPFPK-NLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLD 71
Query: 639 REGDDGKFVSVTIKATDQGEPSLEGVCSFTVEITD 673
RE + + A ++E + +TD
Sbjct: 72 RERIA-TYT-LFSHAVSSNGNAVEDPMEILITVTD 104
Score = 67.0 bits (164), Expect = 9e-14
Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 22/120 (18%)
Query: 251 PKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQG 310
P S + + EN +V + D + ++ Y++ QG
Sbjct: 2 PLGSWVIPPISCPENE-KGPFPKNLVQIKSNKDK------------EGKVFYSITGQGAD 48
Query: 311 ---AGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGG--FSTSVELTIRVTD 365
G F I +G +K+ + LD E + Y+L A S G +E+ I VTD
Sbjct: 49 TPPVGVFIIERETGWLKVTEPLDRE---RIATYTLFSHAV-SSNGNAVEDPMEILITVTD 104
Score = 50.1 bits (120), Expect = 8e-08
Identities = 19/122 (15%), Positives = 39/122 (31%), Gaps = 39/122 (31%)
Query: 679 PLFDRQKYVENVK--QDASIGTNILRVSASDEDADNNGAIVYTLSAP-YNQMDLEYFEIQ 735
PL + + N++++ + + D G + Y+++ + + F I+
Sbjct: 2 PLGSWVIPPISCPENEKGPFPKNLVQIKS---NKDKEGKVFYSITGQGADTPPVGVFIIE 58
Query: 736 PESGWIVLKKPLDVYYYIVDSPRNEGKDFFEINLQSGEVFTKVVFDREKQGAYALEVEAR 795
E+GW+ + +PL DRE+ Y L A
Sbjct: 59 RETGWLKVTEPL---------------------------------DRERIATYTLFSHAV 85
Query: 796 DG 797
Sbjct: 86 SS 87
Score = 49.7 bits (119), Expect = 1e-07
Identities = 13/107 (12%), Positives = 31/107 (28%), Gaps = 19/107 (17%)
Query: 370 APKFELPDYQAHNIDEDITTGTSILKVKATDADSGTNAEIEYHVSDDN--------FAVD 421
P E+ G + ++ ++ Y ++ F ++
Sbjct: 1 GPLGSWVIPPIS-CPEN-EKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIE 58
Query: 422 SN-GVINNHKTLDADNNNAYYEFVITAKDKD-------VDVELDVVD 460
G + + LD + A Y A + +++ + V D
Sbjct: 59 RETGWLKVTEPLDRE-RIATYTLFSHAVSSNGNAVEDPMEILITVTD 104
Score = 40.4 bits (95), Expect = 2e-04
Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 26/105 (24%)
Query: 475 PIHIREN--VTVSTVVTSVKA--------RFGFVG---GSTSSGQFVIEDITGVIRLNSK 521
PI EN + +K+ + G + G F+IE TG +++
Sbjct: 10 PISCPENEKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTE- 68
Query: 522 SISLDR---DKYELNVTAVDDGACCANGDQSVHTATAVVVVFITD 563
LDR Y L AV + +++ +TD
Sbjct: 69 --PLDRERIATYTLFSHAVSSN-------GNAVEDPMEILITVTD 104
Score = 39.7 bits (93), Expect = 4e-04
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 17/92 (18%)
Query: 107 PLPMQAVVQLNAP---PNTPVFTLQARDPDSDHN--IHYFIVRDRTG----GRFEVDERS 157
PL + ++ P L + D + Y I G F ++ +
Sbjct: 2 PLGSWVIPPISCPENEKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERET 61
Query: 158 GVVRTRGTDPFQLDQE----YVLYVKAEDQNG 185
G ++ LD+E Y L+ A NG
Sbjct: 62 GWLKVTEP----LDRERIATYTLFSHAVSSNG 89
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB:
2a4c_A
Length = 98
Score = 64.4 bits (157), Expect = 7e-13
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 581 VEEGAPNGSPVIKVHATDEDKGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTNKVFDRE 640
+EE + ++ TD D G + ++KY + G F +++ TG++ K DRE
Sbjct: 10 LEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGA--GTIFQINDITGDIHAIKRLDRE 66
Query: 641 GDDGKFVSVTIKATDQ-GEPSLEGVCSFTVEITD 673
++T +A D LE F +++ D
Sbjct: 67 EKA--EYTLTAQAVDFETNKPLEPPSEFIIKVQD 98
Score = 62.4 bits (152), Expect = 3e-12
Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 19/104 (18%)
Query: 264 ENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIV 323
E +GP ++ + +D D + ++I+Y L G G F I +G +
Sbjct: 12 EFSGPEPILVGRLHTDLDPGS-------------KKIKYILSGDGAG-TIFQINDITGDI 57
Query: 324 KLAKELDFEDLRQPHVYSLIVTATEDSGG--FSTSVELTIRVTD 365
K LD E + Y+L A + E I+V D
Sbjct: 58 HAIKRLDRE---EKAEYTLTAQAVDFETNKPLEPPSEFIIKVQD 98
Score = 46.3 bits (110), Expect = 2e-06
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 9/74 (12%)
Query: 117 NAPPNTPVFTLQARDPDSDHN-IHYFIVRDRTGGRFEVDERSGVVRTRGTDPFQLDQE-- 173
+ P + D D I Y + D G F++++ +G + +LD+E
Sbjct: 13 FSGPEPILVGRLHTDLDPGSKKIKYILSGDGAGTIFQINDITGDIHAIK----RLDREEK 68
Query: 174 --YVLYVKAEDQNG 185
Y L +A D
Sbjct: 69 AEYTLTAQAVDFET 82
Score = 44.0 bits (104), Expect = 1e-05
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 7/84 (8%)
Query: 379 QAHNIDEDITTGTSILKVKATDADSGTNAEIEYHVSDDN----FAVDSN-GVINNHKTLD 433
Q ++E ++ TD D G + +I+Y +S D F ++ G I+ K LD
Sbjct: 6 QMFVLEEFSGPEPILVGRLHTDLDPG-SKKIKYILSGDGAGTIFQINDITGDIHAIKRLD 64
Query: 434 ADNNNAYYEFVITAKDKDVDVELD 457
+ A Y A D + + L+
Sbjct: 65 RE-EKAEYTLTAQAVDFETNKPLE 87
Score = 42.8 bits (101), Expect = 2e-05
Identities = 19/100 (19%), Positives = 28/100 (28%), Gaps = 37/100 (37%)
Query: 697 GTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFEIQPESGWIVLKKPLDVYYYIVDS 756
++ +D D + I Y LS F+I +G I K L
Sbjct: 17 EPILVGRLHTDLDP-GSKKIKYILS---GDGAGTIFQINDITGDIHAIKRL--------- 63
Query: 757 PRNEGKDFFEINLQSGEVFTKVVFDREKQGAYALEVEARD 796
DRE++ Y L +A D
Sbjct: 64 ------------------------DREEKAEYTLTAQAVD 79
Score = 38.9 bits (91), Expect = 6e-04
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 24/106 (22%)
Query: 472 IYGPIHIRENVTVSTVVT-----------SVKARFGFVGGSTSSGQFVIEDITGVIRLNS 520
++ + + E + + S K ++ G + F I DITG I
Sbjct: 3 VWNQMFVLEEFSGPEPILVGRLHTDLDPGSKKIKYILSGDG-AGTIFQINDITGDIHAIK 61
Query: 521 KSISLDR---DKYELNVTAVDDGACCANGDQSVHTATAVVVVFITD 563
LDR +Y L AVD ++ + + ++ + D
Sbjct: 62 ---RLDREEKAEYTLTAQAVD-----FETNKPL-EPPSEFIIKVQD 98
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.5 bits (156), Expect = 1e-10
Identities = 92/673 (13%), Positives = 187/673 (27%), Gaps = 238/673 (35%)
Query: 11 VNESLKQNMTR------YRTRYKIMNSKYLMNCI-----------VNESLKQNMTSIPWI 53
V + K +++ ++ + + L + V E L+ N ++
Sbjct: 38 VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY---KFL 94
Query: 54 --QITDDAFIIVVNWVIEQLLDRDVIN--HEVVHTDNQRVIIHVKDVNDESPYFINRPLP 109
I + + + + + ++ DNQ + Y ++R P
Sbjct: 95 MSPIKTEQ--------RQPSMMTRMYIEQRDRLYNDNQVF----------AKYNVSRLQP 136
Query: 110 M----QAVVQLNAPPNTPVFTLQARDPDSDHNIHYFIVRDRTG--GRFEVDERSG----- 158
QA+++L P V I G G SG
Sbjct: 137 YLKLRQALLELR--PAKNVL------------ID--------GVLG-------SGKTWVA 167
Query: 159 --VVRTRGTD---PFQLDQEYVLYVKAEDQNGRKDERKFQSTPEERLSIVGGKRAPQFY- 212
V + F+ + ++ + +PE L ++ +
Sbjct: 168 LDVCLSYKVQCKMDFK-----IFWLNL----KNCN------SPETVLEML-----QKLLY 207
Query: 213 --MPSYEAEIPENQKKDTEYPSMTGTATVRIYTKNKN--------DEEPKFSQQVYTPNV 262
P++ + + + + + A +R K+K V
Sbjct: 208 QIDPNWTSR--SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN-------VQNAKA 258
Query: 263 DE--NAGPNTLVTT---VVASDKDGDNVSIISVK--AKSFADREIRYTLKAQGQGAGTFN 315
N L+TT V + IS+ + + E
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE---------------- 302
Query: 316 IGPTSGIVKLAK--ELDFEDLRQ------PHVYSLIVTATEDSGG------------FST 355
+ L K + +DL + P S+I + D +T
Sbjct: 303 ---VKSL--LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 356 SVELTIRVTDVNDNAPKFE----LPDYQAHNIDEDITTGT-SIL--KVKATDADSGTNAE 408
+E ++ V + + F+ P I T S++ V +D N
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPP------SAHIPTILLSLIWFDVIKSDVMVVVN-- 409
Query: 409 IEYHVSDDNFAVDSNGVINNHKTLDADNNNAYYE-----FVITAK-DKDVDVELDVVDRN 462
+ H + ++ + + K + + + +VD
Sbjct: 410 -KLH---------------KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY 453
Query: 463 NK----------PPLWDNAIYGPI--HIR--ENVTVSTVVTSVKARFGFVG------GST 502
N PP D Y I H++ E+ T+ V F F+ +
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513
Query: 503 SSGQFVIEDITGVIRLNSKSISLDRDKYELNVTAVDD--GACCANGDQSVHTATAVVVVF 560
+ I + ++ I + KYE V A+ D N S +T ++
Sbjct: 514 WNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD----LLR 569
Query: 561 ITDVNDNKPVFRE 573
I + +++ +F E
Sbjct: 570 IALMAEDEAIFEE 582
Score = 53.7 bits (128), Expect = 2e-07
Identities = 65/498 (13%), Positives = 128/498 (25%), Gaps = 190/498 (38%)
Query: 329 LDFEDLRQPHVYSLIVTATEDSGGFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDIT 388
+DFE + Y I++ F + ++ ++ +D+
Sbjct: 7 MDFETGEHQYQYKDILS----------------------VFEDAF-VDNFDCKDV-QDMP 42
Query: 389 TGTSILKVKATDADSGTNAEIEYHVSDDNFAVDSNGVINNHKTLDADNNNAYYEFVITAK 448
SIL + EI++ + + +G + TL + +FV
Sbjct: 43 K--SIL----------SKEEIDHIIMSKD---AVSGTLRLFWTLLSKQEEMVQKFVEEVL 87
Query: 449 DKDVDVELDVV-DRNNKP------------PLW-DNAIYGPIHI-RE------------- 480
+ + + +P L+ DN ++ ++ R
Sbjct: 88 RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 481 ----NVTV--------STVVTSV------KARFGF------VGGSTSSGQFVIEDITGVI 516
NV + + V V + + F + S E + +
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP-----ETV--LE 200
Query: 517 RLNSKSISLDRDKYELNVTAVDDGACCANGDQSVHTATAVVVVFIT------------DV 564
L +D N T+ D + N +H+ A + + +V
Sbjct: 201 MLQKLLYQIDP-----NWTSRSDHSS--NIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 565 NDNKPV--FR-ECSTYYPKVEEGAPNGSPVIKVHATDEDKGV----NGQVKYSIVQQPNQ 617
+ K F C K+ T K V + I +
Sbjct: 254 QNAKAWNAFNLSC------------------KILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 618 KGAKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATD------QGEPSLEGVCSFTVEI 671
T DE + K++ + D P + +
Sbjct: 296 MT--LTPDE------VKSLL------LKYLD--CRPQDLPREVLTTNPRRLSIIA----- 334
Query: 672 TDVNDNPPLFDRQKYVENVKQDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEY 731
+ D +D K+V K T I+ S + L + +
Sbjct: 335 ESIRDGLATWDNWKHVNCDKL-----TTIIESS------------LNVLEPAEYRKMFDR 377
Query: 732 FEIQPESGWIVLKKPLDV 749
+ P S I P +
Sbjct: 378 LSVFPPSAHI----PTIL 391
Score = 32.1 bits (72), Expect = 0.84
Identities = 19/136 (13%), Positives = 43/136 (31%), Gaps = 30/136 (22%)
Query: 675 NDNPPLFDRQKYVENVK-QDASIGTNILRVSASDEDADNNGAIVYTLSAPYNQMDLEYFE 733
D +F +V+N +D ++ + S E+ D+ + + +
Sbjct: 19 KDILSVF-EDAFVDNFDCKDVQ---DMPKSILSKEEIDH----IIMSKDAVSGTLRLF-- 68
Query: 734 IQPESGWIVLKKPLDVYYYIVDSPRNEGKDFFEINLQSGEVFTKVVFDREKQGAYALEVE 793
W +L K ++ V+ F +++ R+ + +E
Sbjct: 69 ------WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE--------QRQPSMMTRMYIE 114
Query: 794 ARDGAPSARPNSDGEP 809
RD R +D +
Sbjct: 115 QRD-----RLYNDNQV 125
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 61.6 bits (149), Expect = 9e-10
Identities = 73/511 (14%), Positives = 154/511 (30%), Gaps = 160/511 (31%)
Query: 2 NSKYLMN----CIVNESLKQNMTRYRTRYKIMNSKYLMNCIVNESLKQNMTSIPWIQITD 57
+ YL + + L++N T +++ + + + S + + +
Sbjct: 92 ENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151
Query: 58 -DAFIIVV-----NWVIEQLLD--RDV------INHEVVHTDNQRVIIHVKDVNDESPYF 103
+A ++ + N + + RD+ + +++ + + ++ D F
Sbjct: 152 GNAQLVAIFGGQGN--TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 104 INRPLPMQAVVQLNAPPNTP--------------VFTLQARDPDSDHNIHYFIVRDRTG- 148
+ + L P NTP + +Q HY + G
Sbjct: 210 ---TQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQL--------AHYVVTAKLLGF 258
Query: 149 --GRFEVDERSGVVRTRGT------------DPF--QLDQ--EYVLYVKAEDQNGRKDER 190
G + ++G + F + + + ++
Sbjct: 259 TPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY------- 311
Query: 191 KFQSTPEERLSIVGGKRAPQFYMPSYEAEIPENQKKDTEYPS-M---TGT--ATVRIYTK 244
++ P L PS + EN + PS M + V+ Y
Sbjct: 312 --EAYPNTSLP------------PSILEDSLENNEGV---PSPMLSISNLTQEQVQDYVN 354
Query: 245 NKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKS--------FA 296
N P +QV V N G LV + G N+++ KA S F+
Sbjct: 355 KTNSHLPA-GKQVEISLV--N-GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFS 410
Query: 297 DREIRYTLKAQGQGAGTF-NIG-P---------TSGIVK--LAKELDF--EDLRQPHVYS 341
+R+++++ + F + P + I K + + F +D++ P VY
Sbjct: 411 ERKLKFSNR--------FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP-VYD 461
Query: 342 LIVTATEDSGGF-STSVELTIRVTD------VN-DNAPKFELPDYQAHNID--------- 384
T D S ++ R+ D V + +F+ H +D
Sbjct: 462 -----TFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT----HILDFGPGGASGL 512
Query: 385 ----EDITTGTSILKVKATDADSGTNAEIEY 411
GT + + A D + + +
Sbjct: 513 GVLTHRNKDGTGVRVIVAGTLDINPDDDYGF 543
Score = 50.4 bits (120), Expect = 2e-06
Identities = 56/320 (17%), Positives = 83/320 (25%), Gaps = 151/320 (47%)
Query: 467 LWDNA------IYG--PIHI-RENVTVSTVVTSVKARFGFVGG-------------STSS 504
+W+ A YG + I N T+ FG G +
Sbjct: 1645 VWNRADNHFKDTYGFSILDIVINNPVNLTI------HFGGEKGKRIRENYSAMIFETIVD 1698
Query: 505 GQFVIEDITGVIRLNSKSISLDRDKYELNVTA----------------------VDDGAC 542
G+ E I I +S S + +K L+ T + A
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADAT 1758
Query: 543 CANGDQSVH-----TA-----------TAVVVVFITDVNDNKPVFRECSTYYPKVEEGAP 586
A G H A + V VVF +R G
Sbjct: 1759 FA-G----HSLGEYAALASLADVMSIESLVEVVF----------YR-----------G-- 1790
Query: 587 NGSPVIKVHATDEDKGVNGQVKYSIVQ-QPNQKGAKFTVDEETGEVVTNKVFDREGDDGK 645
+ G+ Y ++ P + A F +E + V +V R G
Sbjct: 1791 ------MTMQVAVPRDELGRSNYGMIAINPGRVAASF--SQEALQYVVERVGKRTG---- 1838
Query: 646 FVSVTIKATDQGEPSLEGVCSFTVEITDVNDNPPLFDRQKYV-----ENVKQDA------ 694
+ VEI VN N ++Q YV + D
Sbjct: 1839 ---------------------WLVEI--VNYNVE--NQQ-YVAAGDLRAL--DTVTNVLN 1870
Query: 695 SIGT-NI----LRVSASDED 709
I I L+ S S E+
Sbjct: 1871 FIKLQKIDIIELQKSLSLEE 1890
Score = 48.1 bits (114), Expect = 1e-05
Identities = 82/543 (15%), Positives = 159/543 (29%), Gaps = 163/543 (30%)
Query: 134 SDHNIHYFIVRDRTGGRFEVDERSGVVRTRGTDPFQLDQEYVLYVKAEDQNGRKDERK-- 191
++IH + + + +++ Y+ A R ++K
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIKN--------------YITARIMAKRPFDKKSN 142
Query: 192 ---FQSTPEERLSIV---GGKRAPQFYMPSYEAEIPENQKKDTEYPSMTG------TATV 239
F++ E +V GG Q Y E+ + Y + G T+
Sbjct: 143 SALFRAVGEGNAQLVAIFGG----QGNTDDYFEEL---RDLYQTYHVLVGDLIKFSAETL 195
Query: 240 RIYTKNKNDEEPKFSQQVYTPNV-----DENAGPNTLVTTVVASDKDGDNVS--IISVKA 292
+ D E F+Q + N+ + + P+ + +S +I V
Sbjct: 196 SELIRTTLDAEKVFTQGL---NILEWLENPSNTPDKDYLLSIP-------ISCPLIGV-- 243
Query: 293 KSFADREIRY--TLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDS 350
A Y T K G G G ++ + + + A DS
Sbjct: 244 IQLA----HYVVTAKLLGFTPGELR-SYLKGATGHSQG----------LVTAVAIAETDS 288
Query: 351 G-GFSTSVELTIRV-----TDVNDNAPKFEL-PDYQAHNIDEDITTGTSILKVKATDADS 403
F SV I V + P L P +++ + + +L +
Sbjct: 289 WESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL---- 344
Query: 404 GTNAEIEYHVSDDNFAVDSNGVINNHKTLDADNNNAYYEFVITAKDKDVDVELDVVDRNN 463
T +++ +V+ N + + + +L N V++
Sbjct: 345 -TQEQVQDYVNKTNSHLPAGKQV--EISL----VNGAKNLVVSG---------------- 381
Query: 464 KPPLWDNAIYG-PIHIRENVTVSTVVTS----------VKARFGFVGG---S---TSSGQ 506
PP ++YG + +R+ S + S RF V S +
Sbjct: 382 -PPQ---SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASD 437
Query: 507 FVIEDITGVIRLNSKSISLDRDKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVND 566
+ +D L ++S + ++ V DG+ D V + + + I D
Sbjct: 438 LINKD------LVKNNVSFNAKDIQIPVYDTFDGS-----DLRVLSGS--ISERIVDCII 484
Query: 567 NKPVFRECSTYYP--------------------KVEEGAPNGSPVIKVHATDEDKGVNGQ 606
PV E +T + + ++G G VI A D +
Sbjct: 485 RLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT--GVRVI--VAGTLDINPDDD 540
Query: 607 VKY 609
+
Sbjct: 541 YGF 543
Score = 39.3 bits (91), Expect = 0.006
Identities = 31/208 (14%), Positives = 60/208 (28%), Gaps = 62/208 (29%)
Query: 416 DNFAVDSNG------VINNHKTLDADNN-------NAYYEFVITAKDKDVDVELDVVDRN 462
DN D+ G VINN L Y +I D ++ + + +
Sbjct: 1650 DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKE 1709
Query: 463 NKPPLWDNAIYGPIHIRE--NVTVST----VVTSV------KARFGFVGGST----S--- 503
+ + T T + K++ +T S
Sbjct: 1710 INEHSTSYTFRSE---KGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE 1766
Query: 504 -------SGQFVIEDITGVIRL-----NSKSISLDRDKY---ELNVTAVDDGACCANGDQ 548
+ IE ++ + + +++ RD+ + A++ G A+ Q
Sbjct: 1767 YAALASLADVMSIES---LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ 1823
Query: 549 -SVHTATAVV------VVFITDVNDNKP 569
++ V +V I VN N
Sbjct: 1824 EALQYVVERVGKRTGWLVEI--VNYNVE 1849
Score = 35.0 bits (80), Expect = 0.13
Identities = 41/284 (14%), Positives = 80/284 (28%), Gaps = 111/284 (39%)
Query: 206 KRAPQFYMPSYEAEIPE----NQKKDTEYPSMTGTATVRI-YTK----NKNDEEPKFSQQ 256
RA + +Y I + N T + +R Y+ D + K +++
Sbjct: 1647 NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLK-TEK 1705
Query: 257 VYTPNVDENA------GP--------NT---LVTTVVASDKDGDNVSIISVKAKSFADR- 298
++ ++E++ T L A+ +D +K+K
Sbjct: 1706 IF-KEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFED--------LKSKGLIPAD 1756
Query: 299 ---------EIRYT-LKAQGQGAGTFNIGPTSGIVKL----------------------- 325
E Y L + A +I +V
Sbjct: 1757 ATFAGHSLGE--YAALASL---ADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA 1811
Query: 326 ------AKELDFEDLRQPHVYSLIVTATEDSGGFSTSVELTIRVTDVNDNAPKFELPDYQ 379
A E L+ ++ + +G VE+ VN N + Q
Sbjct: 1812 INPGRVAASFSQEALQY-----VVERVGKRTGWL---VEI------VNYNV-----ENQQ 1852
Query: 380 ------AHNIDEDITTGTSILKVKATD----ADSGTNAEIEYHV 413
+D +T + +K++ D S + E+E H+
Sbjct: 1853 YVAAGDLRALDT-VTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 30.8 bits (69), Expect = 2.5
Identities = 35/182 (19%), Positives = 56/182 (30%), Gaps = 70/182 (38%)
Query: 159 VVRTRGTDPFQLDQEYVLYVKAEDQNGRKDERKFQSTPEERLSIVGGKRAPQFYMPSYEA 218
VV RG Q V D+ GR + ++I G+ A F + +
Sbjct: 1785 VVFYRG----MTMQVAV----PRDELGRSNYG--------MIAINPGRVAASFSQEALQY 1828
Query: 219 EIPENQKKDTEYPSMTGTATVRIYTKNKNDEEPKFSQQVYTPNVDENAGPNTLVTTVVAS 278
+ K+ V I N N E +QQ V A
Sbjct: 1829 VVERVGKRTGWL--------VEI--VNYNVE----NQQY-----------------VAA- 1856
Query: 279 DKDGDNVSIISVKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPH 338
GD ++A + + +K Q I I++L K L E++ H
Sbjct: 1857 ---GD------LRALDTVTNVLNF-IKLQ-------KID----IIELQKSLSLEEVEG-H 1894
Query: 339 VY 340
++
Sbjct: 1895 LF 1896
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Mus musculus}
Length = 125
Score = 43.4 bits (103), Expect = 3e-05
Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 14/107 (13%)
Query: 581 VEEGAPNGSPVIKVHATDEDKGVNGQV--KYSIVQQPNQKGAKFTVDEETGEVVTNKVFD 638
V E GS V + A D + + I+ + N++ +++++G ++ + D
Sbjct: 17 VLEETDRGSLVGNL-AKDLGLSLRELITRGAQILSKGNKQ--LLQLEQKSGNLLLKEKLD 73
Query: 639 RE---GDDGK-FVSVTIKATDQGEPSLEGVCSFTVEITDVNDNPPLF 681
RE G + + + +++ DVND+ P F
Sbjct: 74 REELCGSTNPCILHFQVLLKSPVQ-----FIQGEIQLQDVNDHAPEF 115
Score = 31.1 bits (71), Expect = 0.58
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 360 TIRVTDVNDNAPKF 373
I++ DVND+AP+F
Sbjct: 102 EIQLQDVNDHAPEF 115
Score = 30.7 bits (70), Expect = 0.60
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 557 VVVFITDVNDNKPVFRE 573
+ + DVND+ P F E
Sbjct: 101 GEIQLQDVNDHAPEFME 117
Score = 28.4 bits (64), Expect = 4.3
Identities = 8/32 (25%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 76 VINHEVVHTDNQ----RVIIHVKDVNDESPYF 103
+++ +V+ + + I ++DVND +P F
Sbjct: 85 ILHFQVL-LKSPVQFIQGEIQLQDVNDHAPEF 115
Score = 27.6 bits (62), Expect = 7.4
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 759 NEGKDFFEINLQSGEVFTKVVFDRE 783
K ++ +SG + K DRE
Sbjct: 51 KGNKQLLQLEQKSGNLLLKEKLDRE 75
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin,
cell adhesion; NMR {Mus musculus}
Length = 103
Score = 35.6 bits (83), Expect = 0.009
Identities = 21/103 (20%), Positives = 40/103 (38%), Gaps = 14/103 (13%)
Query: 581 VEEGAPNGSPVIKVHATDEDKGVNGQV--KYSIVQQPNQKGAKFTVDEETGEVVTNKVFD 638
+ E A +G+ V ++ A D + V + + + V+ + G + N D
Sbjct: 9 IPEEAKHGTFVGRI-AQDLGLELTELVPRLFRVASKDRGD--LLEVNLQNGILFVNSRID 65
Query: 639 RE---GDDGK-FVSVTIKATDQGEPSLEGVCSFTVEITDVNDN 677
RE G + + + + + V VE+ D+NDN
Sbjct: 66 REELCGRSAECSIHLEVIVDRPLQ-----VFHVEVEVRDINDN 103
Score = 27.2 bits (61), Expect = 8.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 759 NEGKDFFEINLQSGEVFTKVVFDREK 784
+ D E+NLQ+G +F DRE+
Sbjct: 43 KDRGDLLEVNLQNGILFVNSRIDREE 68
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.045
Identities = 6/24 (25%), Positives = 12/24 (50%), Gaps = 4/24 (16%)
Query: 580 KVEEG----APNGSPVIKVHATDE 599
K++ A + +P + + AT E
Sbjct: 24 KLQASLKLYADDSAPALAIKATME 47
Score = 32.6 bits (73), Expect = 0.24
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 110 MQAVVQLNAPPNTPVFTLQA 129
+QA ++L A + P ++A
Sbjct: 25 LQASLKLYADDSAPALAIKA 44
Score = 30.3 bits (67), Expect = 1.5
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 783 EKQGAYALEVE----ARDGAPSARPNSDGE 808
EKQ L+ A D AP+ + E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide,
immune system; HET: NAG; 2.70A {Anopheles gambiae}
Length = 1325
Score = 33.8 bits (76), Expect = 0.30
Identities = 50/435 (11%), Positives = 103/435 (23%), Gaps = 54/435 (12%)
Query: 104 INRPLPMQAVVQLNAPPNTPVFTLQARDPDSDHNIHYFIVRDRTGGRFEVDER-SGVVRT 162
+ L F +A +I I D+ + +V
Sbjct: 66 MPEDLTAGNYKITIDGQRGFSFHKEAELVYLSKSISGLIQVDKPVFKPGDTVNFRVIVLD 125
Query: 163 RGTDPFQLDQEYVLYVKAEDQNGRKDERKFQSTPEERLSIVGGKRAPQFYMPSYEAEIPE 222
P + + + D + + G +
Sbjct: 126 TELKPPARVKSVYVTI--RDPQRNVIRKWSTAKLY------AGVFESDLQIAPT------ 171
Query: 223 NQKKDTEYPSMTGTATVRIYTKNKNDEEPKFSQQVYTPN---VDENAGPNTLVT------ 273
M G + + + + F + Y + V L
Sbjct: 172 ---------PMLGVWNISVEVEGEELVSKTFEVKEYVLSTFDVQVMPSVIPLEEHQAVNL 222
Query: 274 TVVASDKDGDNVSIISVKAKSFADREIRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFED 333
T+ A+ G V ++ D +++ + G G + +F
Sbjct: 223 TIEANYHFGKPVQGVAKVELYLDDDKLKLKKELTVYGKGQVELRFD----------NFAM 272
Query: 334 LRQPHVYSLIVTATEDSGGFSTSVELTIRVTDVNDNAPKFELPDYQAHNIDEDITTGTSI 393
+ V+ E + + I V A + EL G
Sbjct: 273 DADQQDVPVKVSFVEQYTNRTVVKQSQITVY---RYAYRVELIKE-----SPQFRPGLPF 324
Query: 394 -LKVKATDADSGTNAEIEYHVSDDNFAVDSNGVINNHK--TLDADNNNAYYEFVITAKDK 450
++ T D I V + ++ +N L+ + + I
Sbjct: 325 KCALQFTHHDGTPAKGISGKVEVSDVRFETTTTSDNDGLIKLELQPSEGTEQLSIHFNAV 384
Query: 451 DVDVELDVVDRNNKPPLWDNAIYGPIHIRENVTVSTVVTSVKARFGFVGGSTSSGQFVIE 510
D + V++ + I+ N + +VT + FV S G +
Sbjct: 385 DGFFFYEDVNKVETVTDAYIKLELKSPIKRNKLMRFMVTCTERMTFFVYYVMSKGNIIDA 444
Query: 511 DITGVIRLNSKSISL 525
+ + L
Sbjct: 445 GFMRPNKQPKYLLQL 459
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 2.7
Identities = 17/104 (16%), Positives = 29/104 (27%), Gaps = 31/104 (29%)
Query: 167 PFQLDQEYVLYVK-AEDQNGR---KDERKFQSTPEERLSIVGGKRAPQFYMPSYEAEIPE 222
+L QE K E+Q R D E+ K ++ ++ E
Sbjct: 77 ADRLTQEPESIRKWREEQRKRLQELDAA--SKVMEQEWREKAKKDLEEWNQ-RQSEQV-E 132
Query: 223 NQKKDTEYPSMTGTATVRIYTKNKNDEEPKFSQQVYTPNVDENA 266
K + N+ ++ F QQ D +
Sbjct: 133 KNKIN-----------------NRIADK-AFYQQ-----PDADI 153
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar;
HET: T4K; 2.10A {Streptomyces venezuelae}
Length = 424
Score = 29.5 bits (67), Expect = 4.4
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 121 NTPVFTLQARDPDSDHNIHYFIVR 144
+ P + D +N Y IV
Sbjct: 279 DLPGVLVADHDRHGLNNHQYVIVE 302
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding
protein; 1.9A {Mus musculus}
Length = 383
Score = 29.2 bits (65), Expect = 5.3
Identities = 13/71 (18%), Positives = 20/71 (28%), Gaps = 5/71 (7%)
Query: 111 QAVVQLNAPPNTPVFTLQARDPDSD---HNIHYFIVRDRTGGRFEVDERSGVVRTRGTDP 167
V A T + +A D H + + + VD S + T
Sbjct: 258 LFHVNNGAGRITATYQPRAARALCDGKWHTLQ--AHKSKHRIVLTVDGNSVRAESPHTHS 315
Query: 168 FQLDQEYVLYV 178
D +YV
Sbjct: 316 TSADTNDPIYV 326
>2iru_A Putative DNA ligase-like protein RV0938/MT0965; polymerase,
primase, NHEJ, transferase; 1.65A {Mycobacterium
tuberculosis} PDB: 2irx_A* 2iry_A* 2r9l_A* 3pky_A*
Length = 303
Score = 29.0 bits (65), Expect = 5.7
Identities = 9/57 (15%), Positives = 15/57 (26%), Gaps = 9/57 (15%)
Query: 101 PYFINRPLPM---------QAVVQLNAPPNTPVFTLQARDPDSDHNIHYFIVRDRTG 148
+ RP A + + P + +A Y I+ TG
Sbjct: 45 GHIAGRPATRKRWPNGVDQPAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATG 101
>3tkv_A FDEC fragment B, attaching and effacing protein, pathogenesis FACT;
invasin, intimin, adhesion vaccination, bacterial
immunoglob domain; 1.90A {Escherichia coli} PDB: 4e9l_A
Length = 414
Score = 29.1 bits (64), Expect = 6.4
Identities = 46/337 (13%), Positives = 89/337 (26%), Gaps = 46/337 (13%)
Query: 259 TPNVDENAGPNTLVTTVVASDKDGDNVSIISVKAKSFADREIRYTL------KAQGQGAG 312
T N D+ T+ A D + + V+ ++ A S + + G
Sbjct: 97 TLNPDKPVVGGTVTAIWTAKDANDNPVTGLNPDAPSLSGAAAAGSTASGWTDNGDGTWTA 156
Query: 313 TFNIGPTSGIVKLAKELDFEDLRQ-----------PHVYSLIVTATEDSGGFSTSVELTI 361
++G T+G + + +L+ +D V+ ED S +T+
Sbjct: 157 QISLGTTAGELDVMPKLNGQDAAANAAKVTVVADALSSNQSKVSVAEDHVKAGESTTVTL 216
Query: 362 RVTDVNDN-----APKFELPDYQAHNIDEDITT--GTSILKVKATDADSGTNAEIEYHVS 414
D + N + L + T G T + +
Sbjct: 217 VAKDAHGNAISGLSLSASLTGTASEGATVSSWTEKGDGSYVATLTTGGKTGELRVMPLFN 276
Query: 415 DDNFAVDSNGVINNHKTLDADNNNAYYEFVITAKDKDVDVELDVVDRNNKPPLWDNAIYG 474
A ++ + + + N+ + ++ + D P
Sbjct: 277 GQPAATEAAQLTVIAGEMSSANSTLVADNKTPTVKTTTELTFTMKDAYGNP--------- 327
Query: 475 PIHIRENVTVSTVVTSVKARFGFVGGSTSSGQFVIEDITGVIRLNSKSISLDRDKYELNV 534
VT V + G S E GV S L+V
Sbjct: 328 -------VTGLKPDAPVFSGAASTGSERPSAGNWTEKGNGVYVSTLTLGSAAGQ---LSV 377
Query: 535 TAVDDGACCANGDQSVHTATAVVVVFITDV---NDNK 568
+G ++ A I D+ +N+
Sbjct: 378 MPRVNGQNAVAQPLVLNVAGDASKAEIRDMTVKVNNQ 414
>1c44_A Protein (sterol carrier protein 2); non specific lipid transfer
protein, fatty acid binding, fatty acyl COA binding,
lipid binding protein; 1.80A {Oryctolagus cuniculus}
SCOP: d.106.1.1 PDB: 1qnd_A 2c0l_B
Length = 123
Score = 27.6 bits (61), Expect = 6.7
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 6/56 (10%)
Query: 601 KGVNGQVKYSIVQQPNQKGAKFTVDEETGEVVTNKVFDREGDDGKFVSVTIKATDQ 656
K + G + + P K A + VD + G+ D++ D TI D
Sbjct: 29 KKIGGIFAFKVKDGPGGKEATWVVDVKNGKGSVLPNSDKKAD------CTITMADS 78
>2kpn_A Bacillolysin; solution structure, BIG_3 domain, PF07523, PSI
BIG-open NESG, cell WALL, hydrolase,
peptidoglycan-anchor; NMR {Bacillus cereus atcc 14579}
Length = 103
Score = 27.1 bits (60), Expect = 9.3
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 333 DLRQPHVYSLIVTATEDSGGFSTSVELTIRVTD---VNDNAPKFELPDYQ 379
D + Y L T T DS G + + T+ V V ++ P E +
Sbjct: 54 DTTKAGTYVLTYTVT-DSKGHEVTAKQTVTVKVREEVKNDKPILEHHHHH 102
>3kpt_A Collagen adhesion protein; intramolecular amide bond, pilin
subunit, beta sheet; 2.10A {Bacillus cereus atcc 14579}
Length = 355
Score = 28.4 bits (62), Expect = 9.9
Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 4/134 (2%)
Query: 526 DRDKYELNVTAVDDGACCANGDQSVHTATAVVVVFITDVNDNKPVFRECSTYYPKVEEGA 585
+R + DGA V V + D +V+EG
Sbjct: 156 NRLVIQGKPIVKIDGAEVNANVVEVAIEGQKVTATVKDFTKMDGKKEFHLQIKSQVKEGV 215
Query: 586 PNGSPVI---KVHATDEDKGVNGQVKYSIVQQPNQKGAKFT-VDEETGEVVTNKVFDREG 641
P+GS ++ K+H T+++ + + +V P + T +D + F +
Sbjct: 216 PSGSEILNTAKIHFTNKNDVIGEKESKPVVVIPTTGIIELTKIDSANKNKMKGAEFVLKD 275
Query: 642 DDGKFVSVTIKATD 655
++GK V V K
Sbjct: 276 NNGKIVVVAGKEVT 289
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.379
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,377,018
Number of extensions: 779534
Number of successful extensions: 2140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1412
Number of HSP's successfully gapped: 279
Length of query: 817
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 716
Effective length of database: 3,881,772
Effective search space: 2779348752
Effective search space used: 2779348752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (27.8 bits)