Query psy111
Match_columns 85
No_of_seqs 114 out of 659
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 17:57:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy111.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/111hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3340|consensus 100.0 2E-32 4.2E-37 206.6 5.3 84 1-84 245-328 (454)
2 smart00812 Alpha_L_fucos Alpha 99.9 1.2E-25 2.6E-30 171.2 7.7 81 1-83 228-308 (384)
3 PF01120 Alpha_L_fucos: Alpha- 99.8 3.3E-21 7.2E-26 144.5 3.5 78 1-83 238-315 (346)
4 COG3669 Alpha-L-fucosidase [Ca 98.7 2.5E-08 5.4E-13 77.2 5.2 49 31-83 239-290 (430)
5 PRK09925 leu operon leader pep 70.7 0.74 1.6E-05 23.0 -1.0 17 69-85 2-18 (28)
6 PHA03364 hypothetical protein; 56.9 5.7 0.00012 29.7 1.1 13 73-85 144-156 (264)
7 PF02522 Antibiotic_NAT: Amino 55.2 15 0.00034 26.1 3.1 21 60-80 15-35 (229)
8 PF01805 Surp: Surp module; I 53.2 11 0.00023 21.0 1.6 16 62-77 2-17 (55)
9 PF03049 Herpes_UL79: UL79 fam 52.6 7.3 0.00016 28.9 1.1 14 72-85 141-154 (253)
10 PF14468 DUF4427: Protein of u 51.3 11 0.00025 25.3 1.7 36 40-83 33-72 (132)
11 PF10104 Brr6_like_C_C: Di-sul 49.6 2.5 5.4E-05 28.2 -1.7 37 34-73 73-109 (135)
12 PF09907 DUF2136: Uncharacteri 47.9 21 0.00045 21.7 2.4 28 56-84 16-45 (76)
13 KOG3493|consensus 47.9 6.4 0.00014 23.9 0.1 12 1-12 3-14 (73)
14 TIGR02469 CbiT precorrin-6Y C5 45.9 30 0.00065 20.8 3.0 23 60-82 100-122 (124)
15 COG2242 CobL Precorrin-6B meth 45.1 29 0.00063 24.6 3.1 25 59-83 112-136 (187)
16 PF14258 DUF4350: Domain of un 42.9 25 0.00054 20.0 2.1 19 62-80 50-68 (70)
17 KOG1136|consensus 42.0 40 0.00086 26.8 3.6 63 14-83 174-240 (501)
18 smart00648 SWAP Suppressor-of- 41.9 14 0.00031 20.4 0.9 15 63-77 2-16 (54)
19 TIGR03675 arCOG00543 arCOG0054 39.1 55 0.0012 27.0 4.2 40 45-84 372-411 (630)
20 PF12847 Methyltransf_18: Meth 37.9 25 0.00055 20.9 1.7 22 60-81 89-110 (112)
21 KOG3439|consensus 37.7 39 0.00085 22.3 2.6 35 45-82 75-109 (116)
22 COG4013 Uncharacterized protei 37.5 37 0.0008 21.5 2.4 29 57-85 6-34 (91)
23 PF08241 Methyltransf_11: Meth 35.1 28 0.00061 19.6 1.5 22 59-80 74-95 (95)
24 PRK08317 hypothetical protein; 34.1 56 0.0012 21.8 3.1 25 57-81 99-123 (241)
25 TIGR00452 methyltransferase, p 31.3 58 0.0013 24.5 3.0 25 57-81 200-224 (314)
26 cd02440 AdoMet_MTases S-adenos 30.3 69 0.0015 17.5 2.7 22 59-80 81-102 (107)
27 PF08532 Glyco_hydro_42M: Beta 29.8 59 0.0013 22.5 2.7 33 49-81 58-90 (207)
28 PF01555 N6_N4_Mtase: DNA meth 29.7 39 0.00084 22.5 1.7 24 61-84 35-58 (231)
29 COG1236 YSH1 Predicted exonucl 29.3 67 0.0015 25.1 3.2 66 15-84 160-225 (427)
30 TIGR00417 speE spermidine synt 26.8 81 0.0018 22.7 3.0 24 61-84 165-188 (270)
31 KOG1270|consensus 26.7 53 0.0011 24.9 2.1 25 56-80 169-193 (282)
32 COG0296 GlgB 1,4-alpha-glucan 26.5 1.2E+02 0.0027 25.3 4.3 38 45-82 194-234 (628)
33 cd03143 A4_beta-galactosidase_ 26.0 74 0.0016 20.6 2.5 34 48-81 53-86 (154)
34 PF14250 AbrB-like: AbrB-like 25.6 34 0.00075 20.8 0.8 11 71-81 34-44 (71)
35 TIGR00438 rrmJ cell division p 25.2 95 0.0021 20.8 3.0 22 61-82 125-146 (188)
36 PF13489 Methyltransf_23: Meth 25.0 30 0.00065 21.7 0.5 25 58-82 91-115 (161)
37 PRK15068 tRNA mo(5)U34 methylt 24.7 92 0.002 23.2 3.1 25 57-81 201-225 (322)
38 TIGR02764 spore_ybaN_pdaB poly 24.2 1.2E+02 0.0027 20.3 3.4 34 48-81 125-158 (191)
39 PLN02232 ubiquinone biosynthes 24.1 1E+02 0.0022 20.3 2.9 23 58-80 57-79 (160)
40 PF09173 eIF2_C: Initiation fa 24.0 44 0.00095 20.9 1.0 16 69-84 24-39 (88)
41 KOG1709|consensus 24.0 75 0.0016 23.8 2.4 22 63-84 89-110 (271)
42 PLN02396 hexaprenyldihydroxybe 23.9 89 0.0019 23.6 2.9 27 56-82 209-235 (322)
43 COG2227 UbiG 2-polyprenyl-3-me 23.9 95 0.0021 23.0 2.9 25 56-80 135-159 (243)
44 PF08003 Methyltransf_9: Prote 23.6 1E+02 0.0022 23.7 3.1 38 34-81 181-218 (315)
45 PRK14103 trans-aconitate 2-met 23.5 1.1E+02 0.0023 21.6 3.1 24 59-82 103-126 (255)
46 TIGR01934 MenG_MenH_UbiE ubiqu 23.4 1.2E+02 0.0026 20.1 3.2 23 58-80 119-141 (223)
47 TIGR01515 branching_enzym alph 22.9 1.7E+02 0.0038 23.9 4.5 38 45-82 186-226 (613)
48 PRK01683 trans-aconitate 2-met 22.9 1.3E+02 0.0028 21.0 3.4 24 59-82 107-130 (258)
49 PF05372 Delta_lysin: Delta ly 22.7 50 0.0011 16.0 0.9 15 60-74 8-22 (25)
50 TIGR03073 release_rtcB release 22.2 31 0.00068 26.6 0.2 20 51-70 325-344 (356)
51 smart00828 PKS_MT Methyltransf 21.9 1.1E+02 0.0025 20.7 2.9 24 58-81 80-103 (224)
52 COG1782 Predicted metal-depend 21.6 1.1E+02 0.0025 25.5 3.2 41 45-85 378-418 (637)
53 PLN02233 ubiquinone biosynthes 21.4 1.3E+02 0.0028 21.5 3.2 23 58-80 158-180 (261)
54 KOG1331|consensus 20.4 1.1E+02 0.0023 23.4 2.7 22 61-82 122-143 (293)
55 PRK11036 putative S-adenosyl-L 20.2 1.1E+02 0.0023 21.6 2.5 22 59-80 126-147 (255)
56 TIGR02752 MenG_heptapren 2-hep 20.2 1.4E+02 0.003 20.4 3.0 23 58-80 127-149 (231)
57 PF11334 DUF3136: Protein of u 20.2 87 0.0019 18.6 1.7 15 55-69 47-61 (64)
58 PF06026 Rib_5-P_isom_A: Ribos 20.2 57 0.0012 22.6 1.1 12 71-82 119-130 (173)
59 PRK07402 precorrin-6B methylas 20.1 1.5E+02 0.0032 20.0 3.1 25 60-84 120-144 (196)
60 PLN02244 tocopherol O-methyltr 20.1 1.3E+02 0.0028 22.5 3.1 24 57-80 198-221 (340)
61 PRK04457 spermidine synthase; 20.1 1.2E+02 0.0026 21.9 2.8 25 59-83 154-178 (262)
No 1
>KOG3340|consensus
Probab=99.97 E-value=2e-32 Score=206.57 Aligned_cols=84 Identities=49% Similarity=0.949 Sum_probs=82.2
Q ss_pred CEEEcCCCCCCCCcccCCccCCCCcCCCCCCCCCCccccccCCCCCcccccCCCCCCCCCHHHHHHHHHHhhcCCCcEEE
Q psy111 1 SVVVNDRWCNTCLCKHGGYLTCEDKYNPGKFQSRKFENCFTLDKYSWGYRRDANIDDILNMTEVLQTMMNTVSFGDKTLS 80 (85)
Q Consensus 1 ~vvvNdR~g~~~~~~~gdy~t~e~~~~p~~~~~~pWE~c~ti~~~sWGY~~~~~~~~~ks~~~li~~Lv~~vskgGNlLL 80 (85)
+||+|||||.++.|+||+|+||+|++.|+...+++||+|+||+++||||+|++...++.++.|||+.|+++||+||||||
T Consensus 245 ~VV~NDRWG~gt~c~HGgfy~csD~~~Pg~L~~hKWEnc~tlDk~SWG~Rrd~~~Sd~~t~~Eii~qlv~Tvsc~GN~Ll 324 (454)
T KOG3340|consen 245 TVVVNDRWGTGTMCKHGGFYTCSDRYNPGKLLEHKWENCMTLDKHSWGYRRDMKLSDVNTAYEIIKQLVRTVSCNGNLLL 324 (454)
T ss_pred eEEecccccCCcccccCCeeeccccCCCcccchhhhhhceeeeccccchhcccchhhhhhHHHHHHHHHHhEeeCCeEEE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccC
Q psy111 81 ILFS 84 (85)
Q Consensus 81 NIG~ 84 (85)
|||-
T Consensus 325 NvGP 328 (454)
T KOG3340|consen 325 NVGP 328 (454)
T ss_pred eecC
Confidence 9994
No 2
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=99.92 E-value=1.2e-25 Score=171.24 Aligned_cols=81 Identities=40% Similarity=0.712 Sum_probs=71.2
Q ss_pred CEEEcCCCCCCCCcccCCccCCCCcCCCCCCCCCCccccccCCCCCcccccCCCCCCCCCHHHHHHHHHHhhcCCCcEEE
Q psy111 1 SVVVNDRWCNTCLCKHGGYLTCEDKYNPGKFQSRKFENCFTLDKYSWGYRRDANIDDILNMTEVLQTMMNTVSFGDKTLS 80 (85)
Q Consensus 1 ~vvvNdR~g~~~~~~~gdy~t~e~~~~p~~~~~~pWE~c~ti~~~sWGY~~~~~~~~~ks~~~li~~Lv~~vskgGNlLL 80 (85)
+||||+||+ .....+|+|.+++++..|......|||+|+||+ .||||++++.+++|||+++||++|+++|||||||||
T Consensus 228 ~vvvn~R~~-~~~~~~g~~~~~~e~~~p~~~~~~pwE~~~ti~-~sWgy~~~~~~~~~ks~~~li~~l~~~Vsk~GnlLL 305 (384)
T smart00812 228 TVVVNDRWG-GTGCKHGGFYTDEERGAPGKLLPHPWETCTTIG-KSWGYRRNESDSDYKSPKELIRDLVDIVSKGGNLLL 305 (384)
T ss_pred eEEEEcccc-ccCCCCCCcccCcccCCCCCCCCCCcccccccC-CCCCcCCCCCcccCCCHHHHHHHHhhhcCCCceEEE
Confidence 479999997 223347888877777888888899999999999 899999987667899999999999999999999999
Q ss_pred ecc
Q psy111 81 ILF 83 (85)
Q Consensus 81 NIG 83 (85)
|||
T Consensus 306 NVg 308 (384)
T smart00812 306 NVG 308 (384)
T ss_pred ccC
Confidence 998
No 3
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=99.82 E-value=3.3e-21 Score=144.49 Aligned_cols=78 Identities=29% Similarity=0.528 Sum_probs=62.3
Q ss_pred CEEEcCCCCCCCCcccCCccCCCCcCCCCCCCCCCccccccCCCCCcccccCCCCCCCCCHHHHHHHHHHhhcCCCcEEE
Q psy111 1 SVVVNDRWCNTCLCKHGGYLTCEDKYNPGKFQSRKFENCFTLDKYSWGYRRDANIDDILNMTEVLQTMMNTVSFGDKTLS 80 (85)
Q Consensus 1 ~vvvNdR~g~~~~~~~gdy~t~e~~~~p~~~~~~pWE~c~ti~~~sWGY~~~~~~~~~ks~~~li~~Lv~~vskgGNlLL 80 (85)
+||||+|++... ....||.|+|+ ..|......|||+|+||+ .+||| ...+..+||+++||++|+++|||||||||
T Consensus 238 ~~ii~~r~~~~~-~~~~d~~~~E~-~~~~~~~~~pwE~~~ti~-~~W~y--~~~~~~~ks~~~li~~l~~~vs~ngnlLL 312 (346)
T PF01120_consen 238 DVIINNRWGGNE-QGDGDYNTPER-GIPGEIQGRPWETCTTIG-PSWGY--NTPDEKYKSADELIDILVDSVSRNGNLLL 312 (346)
T ss_dssp TSEEECCCSSCS-SCCBSCCEECT-TBTTTEEESEEEEEEESS-SSSS---CGGGCGS--HHHHHHHHHHHHTBTEEEEE
T ss_pred eEEEecccCCCC-Cccccccchhc-cCCCCCCCCCccccCcCC-CCCcc--cCCCCCcCCHHHHHHHHHHHhccCceEEE
Confidence 489999998762 11229999986 567778899999999997 89999 22345899999999999999999999999
Q ss_pred ecc
Q psy111 81 ILF 83 (85)
Q Consensus 81 NIG 83 (85)
|||
T Consensus 313 Nig 315 (346)
T PF01120_consen 313 NIG 315 (346)
T ss_dssp EE-
T ss_pred ecC
Confidence 998
No 4
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=98.69 E-value=2.5e-08 Score=77.21 Aligned_cols=49 Identities=14% Similarity=0.082 Sum_probs=38.9
Q ss_pred CCCCCccccccCCC---CCcccccCCCCCCCCCHHHHHHHHHHhhcCCCcEEEecc
Q psy111 31 FQSRKFENCFTLDK---YSWGYRRDANIDDILNMTEVLQTMMNTVSFGDKTLSILF 83 (85)
Q Consensus 31 ~~~~pWE~c~ti~~---~sWGY~~~~~~~~~ks~~~li~~Lv~~vskgGNlLLNIG 83 (85)
..+.+|.+|...++ ..|+|. +.+|||.+||+..|+++|||||+|||||+
T Consensus 239 ~g~n~~~~~~~~~p~h~~~~~~~----d~~~Ks~~elv~~l~dvVskgg~llLnIp 290 (430)
T COG3669 239 HGDNSWTIFTCGGPDHSLRPGHE----DQDYKSVEELVSILFDVVSKGGPLLLNIP 290 (430)
T ss_pred cccCCCcceeccCCccccccccc----ccccccHHHHhhhhhhhhccCCceEeccC
Confidence 34578998876652 234443 35799999999999999999999999997
No 5
>PRK09925 leu operon leader peptide; Provisional
Probab=70.73 E-value=0.74 Score=22.96 Aligned_cols=17 Identities=24% Similarity=0.032 Sum_probs=13.7
Q ss_pred HHhhcCCCcEEEeccCC
Q psy111 69 MNTVSFGDKTLSILFSV 85 (85)
Q Consensus 69 v~~vskgGNlLLNIG~~ 85 (85)
..+|..+|=||||..||
T Consensus 2 ~hivrf~gllllna~s~ 18 (28)
T PRK09925 2 THIVRFIGLLLLNASSL 18 (28)
T ss_pred ceEEEEeeeeeeehhhh
Confidence 35678899999998875
No 6
>PHA03364 hypothetical protein; Provisional
Probab=56.86 E-value=5.7 Score=29.69 Aligned_cols=13 Identities=31% Similarity=-0.051 Sum_probs=11.6
Q ss_pred cCCCcEEEeccCC
Q psy111 73 SFGDKTLSILFSV 85 (85)
Q Consensus 73 skgGNlLLNIG~~ 85 (85)
-.+||+|.|.|||
T Consensus 144 l~DGN~LFnLGSV 156 (264)
T PHA03364 144 LRDGNILFNLGSV 156 (264)
T ss_pred ccccceEEEccch
Confidence 4689999999997
No 7
>PF02522 Antibiotic_NAT: Aminoglycoside 3-N-acetyltransferase; InterPro: IPR003679 This family consists of bacterial aminoglycoside 3-N-acetyltransferases (2.3.1.81 from EC) that catalyse the reaction []: Acetyl-Co + a 2-deoxystreptamine antibiotic = CoA + N3'-acetyl-2-deoxystreptamine antibiotic The enzyme can use a range of antibiotics with 2-deoxystreptamine rings as acceptor for its acetyltransferase activity, this inactivates and confers resistance to gentamicin, kanamycin, tobramycin, neomycin and apramycin amongst others. For the kanamycin group antibiotics acetylation occurred at the 3"-amino group in arbekacin and amikacin, and at the 3-amino group in dibekacin as in the case of kanamycin reflecting the effect of the (S)-4-amino-2-hydroxybutyryl side chain which is present in arbekacin and amikacin, but absent in dibekacin and kanamycin [].; GO: 0046353 aminoglycoside 3-N-acetyltransferase activity, 0046677 response to antibiotic; PDB: 3SMA_D 3N0M_B 3IJW_B 3N0S_D 3SLB_C 3SLF_A 3KZL_D 3E4F_B 2NYG_E.
Probab=55.18 E-value=15 Score=26.10 Aligned_cols=21 Identities=10% Similarity=0.196 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHhhcCCCcEEE
Q psy111 60 NMTEVLQTMMNTVSFGDKTLS 80 (85)
Q Consensus 60 s~~~li~~Lv~~vskgGNlLL 80 (85)
.++.+|+.|.++|...|.|++
T Consensus 15 g~~~vi~aL~~~vg~~GTlvm 35 (229)
T PF02522_consen 15 GAETVIDALLEVVGPEGTLVM 35 (229)
T ss_dssp HHHHHHHHHHHHHTTTSEEEE
T ss_pred cHHHHHHHHHHHhccCCeEEE
Confidence 588999999999999999986
No 8
>PF01805 Surp: Surp module; InterPro: IPR000061 SWAP is derived from the Suppressor-of-White-APricot splicing regulator from Drosophila melanogaster. The domain is found in regulators responsible for pervasive, nonsex-specific alternative pre-mRNA splicing characteristics and has been found in splicing regulatory proteins []. These ancient, conserved SWAP proteins share a colinearly arrayed series of novel sequence motifs [].; GO: 0003723 RNA binding, 0006396 RNA processing; PDB: 2E5Z_A 2DT7_B 2DT6_A 1UG0_A 1X4P_A 2E60_A 1X4O_A 4DGW_B.
Probab=53.19 E-value=11 Score=21.05 Aligned_cols=16 Identities=13% Similarity=0.185 Sum_probs=14.1
Q ss_pred HHHHHHHHHhhcCCCc
Q psy111 62 TEVLQTMMNTVSFGDK 77 (85)
Q Consensus 62 ~~li~~Lv~~vskgGN 77 (85)
.++|+.++..|+++|.
T Consensus 2 ~~~I~~tA~~Va~~G~ 17 (55)
T PF01805_consen 2 REIIDKTAEFVAKNGP 17 (55)
T ss_dssp HHHHHHHHHHHHHCSH
T ss_pred hHHHHHHHHHHHhcCH
Confidence 4789999999999994
No 9
>PF03049 Herpes_UL79: UL79 family; InterPro: IPR004290 Members of the herpesvirus UL79 family also contain proteins annotated as U52; these are functionally uncharacterised.
Probab=52.62 E-value=7.3 Score=28.94 Aligned_cols=14 Identities=29% Similarity=-0.100 Sum_probs=12.0
Q ss_pred hcCCCcEEEeccCC
Q psy111 72 VSFGDKTLSILFSV 85 (85)
Q Consensus 72 vskgGNlLLNIG~~ 85 (85)
.-.+||+|.|.|||
T Consensus 141 ~l~DGN~LFnLGsv 154 (253)
T PF03049_consen 141 NLRDGNILFNLGSV 154 (253)
T ss_pred hccccceEEEccch
Confidence 34699999999997
No 10
>PF14468 DUF4427: Protein of unknown function (DUF4427)
Probab=51.33 E-value=11 Score=25.35 Aligned_cols=36 Identities=19% Similarity=0.308 Sum_probs=27.8
Q ss_pred ccCCCCCcccccCCCCCCCCCHHHHHHHHHHh----hcCCCcEEEecc
Q psy111 40 FTLDKYSWGYRRDANIDDILNMTEVLQTMMNT----VSFGDKTLSILF 83 (85)
Q Consensus 40 ~ti~~~sWGY~~~~~~~~~ks~~~li~~Lv~~----vskgGNlLLNIG 83 (85)
+..+ ++|=|..+. ..++++.|+.. |+|-|.+||.|-
T Consensus 33 ~e~G-~~wvWi~DN-------~~~~vRALl~~grV~v~~eGRYLl~l~ 72 (132)
T PF14468_consen 33 REFG-NAWVWIHDN-------QSEVVRALLQAGRVKVNKEGRYLLDLD 72 (132)
T ss_pred hhcC-ceEEEEecC-------cCHHHHHHHHcCceeeccCceeeeecc
Confidence 3456 788888654 56888888874 899999999873
No 11
>PF10104 Brr6_like_C_C: Di-sulfide bridge nucleocytoplasmic transport domain; InterPro: IPR018767 This entry represents the highly conserved C-terminal region of Brr6-like proteins, including Brl1, which are found in fungi. Brr6 from Saccharomyces cerevisiae (Baker's yeast) is an essential nuclear envelope integral membrane protein that is required for mRNA nuclear export []. Brr6 is involved in the nuclear pore complex (NPC) distribution and nuclear envelope morphology. Brr6 interacts with Brl1, which is also involved in mRNA and protein export from the nucleus []. The conserved C-terminal region carries four highly conserved cysteine residues. It is suggested that members of the family interact with each other via di-sulphide bridges to form a complex that is involved in nucleocytoplasmic transport.; GO: 0015031 protein transport, 0051028 mRNA transport, 0016021 integral to membrane
Probab=49.62 E-value=2.5 Score=28.18 Aligned_cols=37 Identities=19% Similarity=0.400 Sum_probs=26.2
Q ss_pred CCccccccCCCCCcccccCCCCCCCCCHHHHHHHHHHhhc
Q psy111 34 RKFENCFTLDKYSWGYRRDANIDDILNMTEVLQTMMNTVS 73 (85)
Q Consensus 34 ~pWE~c~ti~~~sWGY~~~~~~~~~ks~~~li~~Lv~~vs 73 (85)
..||.||.-|+.+.|..+-- ..++..|+|..+++..|
T Consensus 73 ~~We~CMn~Dp~~~~~~~~l---~ae~laeiiN~Fie~is 109 (135)
T PF10104_consen 73 DEWEKCMNRDPDSIGRSSIL---SAETLAEIINSFIEPIS 109 (135)
T ss_pred HHHHHHHcCChHHhhHHHHH---HHHHHHHHHHHHHhHhH
Confidence 56999999987777765421 24567778888777655
No 12
>PF09907 DUF2136: Uncharacterized protein conserved in bacteria (DUF2136); InterPro: IPR018669 HigB (YgjN) is the toxin of the HigB-HigA toxin-antitoxin system, acting as a translation-dependent mRNA interferase. HigB inhibits protein synthesis by cleaving translated mRNAs within the coding region []. ; GO: 0016788 hydrolase activity, acting on ester bonds
Probab=47.94 E-value=21 Score=21.65 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHHHH--hhcCCCcEEEeccC
Q psy111 56 DDILNMTEVLQTMMN--TVSFGDKTLSILFS 84 (85)
Q Consensus 56 ~~~ks~~~li~~Lv~--~vskgGNlLLNIG~ 84 (85)
.+|+++.||.+.+-+ .|. ++.+..|||.
T Consensus 16 a~w~~~~elk~~f~~ad~v~-~~~~vFnI~G 45 (76)
T PF09907_consen 16 ADWKNPAELKQQFPSADIVK-NNRVVFNIGG 45 (76)
T ss_pred ccCCCHHHHHHHCcchhhhc-CCEEEEEcCC
Confidence 479999999999855 555 9999999974
No 13
>KOG3493|consensus
Probab=47.85 E-value=6.4 Score=23.86 Aligned_cols=12 Identities=42% Similarity=0.562 Sum_probs=9.9
Q ss_pred CEEEcCCCCCCC
Q psy111 1 SVVVNDRWCNTC 12 (85)
Q Consensus 1 ~vvvNdR~g~~~ 12 (85)
+|++|||+|...
T Consensus 3 ev~~nDrLGKKV 14 (73)
T KOG3493|consen 3 EVVLNDRLGKKV 14 (73)
T ss_pred eehhhhhcCceE
Confidence 588999999764
No 14
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=45.93 E-value=30 Score=20.77 Aligned_cols=23 Identities=13% Similarity=0.244 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHhhcCCCcEEEec
Q psy111 60 NMTEVLQTMMNTVSFGDKTLSIL 82 (85)
Q Consensus 60 s~~~li~~Lv~~vskgGNlLLNI 82 (85)
...++++.+.+.+.+||.+++++
T Consensus 100 ~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 100 LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hHHHHHHHHHHHcCCCCEEEEEe
Confidence 35689999999999999999986
No 15
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=45.09 E-value=29 Score=24.63 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHhhcCCCcEEEecc
Q psy111 59 LNMTEVLQTMMNTVSFGDKTLSILF 83 (85)
Q Consensus 59 ks~~~li~~Lv~~vskgGNlLLNIG 83 (85)
++.++|++...+.+.+||.+++|.-
T Consensus 112 ~~i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 112 GNIEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred CCHHHHHHHHHHHcCcCCeEEEEee
Confidence 4578999999999999999999973
No 16
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=42.89 E-value=25 Score=19.98 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhcCCCcEEE
Q psy111 62 TEVLQTMMNTVSFGDKTLS 80 (85)
Q Consensus 62 ~~li~~Lv~~vskgGNlLL 80 (85)
.+=++.|.+-|.+||.|+|
T Consensus 50 ~~~~~~l~~~v~~G~~lvl 68 (70)
T PF14258_consen 50 PEEAEALLEWVEAGNTLVL 68 (70)
T ss_pred hHHHHHHHHHHHcCCEEEE
Confidence 3667789999999999886
No 17
>KOG1136|consensus
Probab=41.97 E-value=40 Score=26.83 Aligned_cols=63 Identities=14% Similarity=0.184 Sum_probs=38.2
Q ss_pred cccCCccCCCCcCCCCCCCCCCcccc----ccCCCCCcccccCCCCCCCCCHHHHHHHHHHhhcCCCcEEEecc
Q psy111 14 CKHGGYLTCEDKYNPGKFQSRKFENC----FTLDKYSWGYRRDANIDDILNMTEVLQTMMNTVSFGDKTLSILF 83 (85)
Q Consensus 14 ~~~gdy~t~e~~~~p~~~~~~pWE~c----~ti~~~sWGY~~~~~~~~~ks~~~li~~Lv~~vskgGNlLLNIG 83 (85)
-..|||....|+..- ..|-.| .-|.+..++- ...+..+--..+.++..-++|++||..|+=|-
T Consensus 174 vYTGDYnmTpDrHLG-----aA~id~~rpdlLIsESTYat--tiRdskr~rERdFLk~VhecVa~GGkvlIPvF 240 (501)
T KOG1136|consen 174 VYTGDYNMTPDRHLG-----AAWIDKCRPDLLISESTYAT--TIRDSKRCRERDFLKKVHECVARGGKVLIPVF 240 (501)
T ss_pred EEecCccCCcccccc-----hhhhccccCceEEeecccee--eeccccchhHHHHHHHHHHHHhcCCeEEEEee
Confidence 345777666655432 123222 1233233332 23334556678999999999999999998664
No 18
>smart00648 SWAP Suppressor-of-White-APricot splicing regulator. domain present in regulators which are responsible for pre-mRNA splicing processes
Probab=41.87 E-value=14 Score=20.37 Aligned_cols=15 Identities=7% Similarity=0.180 Sum_probs=13.1
Q ss_pred HHHHHHHHhhcCCCc
Q psy111 63 EVLQTMMNTVSFGDK 77 (85)
Q Consensus 63 ~li~~Lv~~vskgGN 77 (85)
++|+.++.-|+++|-
T Consensus 2 ~iI~~tA~~Va~~G~ 16 (54)
T smart00648 2 DIIDKTAQFVARNGP 16 (54)
T ss_pred cHHHHHHHHHHHhhH
Confidence 689999999999983
No 19
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=39.10 E-value=55 Score=27.04 Aligned_cols=40 Identities=23% Similarity=0.299 Sum_probs=25.3
Q ss_pred CCcccccCCCCCCCCCHHHHHHHHHHhhcCCCcEEEeccC
Q psy111 45 YSWGYRRDANIDDILNMTEVLQTMMNTVSFGDKTLSILFS 84 (85)
Q Consensus 45 ~sWGY~~~~~~~~~ks~~~li~~Lv~~vskgGNlLLNIG~ 84 (85)
.++|-..+..+..-....++++.+.+++.+||++|+=+.+
T Consensus 372 STYg~~~~~~~~r~~~e~~l~~~I~~tl~~gG~VLIP~fa 411 (630)
T TIGR03675 372 STYGGRDDYQPSREEAEKELIKVVNETIKRGGKVLIPVFA 411 (630)
T ss_pred CccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEech
Confidence 5666432111222234566788888889999999986654
No 20
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=37.90 E-value=25 Score=20.94 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHhhcCCCcEEEe
Q psy111 60 NMTEVLQTMMNTVSFGDKTLSI 81 (85)
Q Consensus 60 s~~~li~~Lv~~vskgGNlLLN 81 (85)
...++++.+.+.+.+||-|+++
T Consensus 89 ~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 89 ERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEE
Confidence 4678899999999999999986
No 21
>KOG3439|consensus
Probab=37.67 E-value=39 Score=22.35 Aligned_cols=35 Identities=6% Similarity=0.020 Sum_probs=27.7
Q ss_pred CCcccccCCCCCCCCCHHHHHHHHHHhhcCCCcEEEec
Q psy111 45 YSWGYRRDANIDDILNMTEVLQTMMNTVSFGDKTLSIL 82 (85)
Q Consensus 45 ~sWGY~~~~~~~~~ks~~~li~~Lv~~vskgGNlLLNI 82 (85)
.-|-|.-+. ---||+|+|..|-++-+-+|-|+||-
T Consensus 75 slflYVN~s---FAPsPDq~v~~Ly~cf~~d~~Lvl~Y 109 (116)
T KOG3439|consen 75 SLFLYVNNS---FAPSPDQIVGNLYECFGTDGKLVLNY 109 (116)
T ss_pred eEEEEEcCc---cCCCchhHHHHHHHhcCCCCEEEEEE
Confidence 456776332 34589999999999999999999983
No 22
>COG4013 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.49 E-value=37 Score=21.46 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHHhhcCCCcEEEeccCC
Q psy111 57 DILNMTEVLQTMMNTVSFGDKTLSILFSV 85 (85)
Q Consensus 57 ~~ks~~~li~~Lv~~vskgGNlLLNIG~~ 85 (85)
+.||++|+++.|-+-|..|-.+=||.|-|
T Consensus 6 ~~~~peEl~eY~~eeV~~gd~vel~~grV 34 (91)
T COG4013 6 DVKNPEELIEYLNEEVDVGDYVELYFGRV 34 (91)
T ss_pred hhcCHHHHHHHHHhcCCCCCEEEEEEEEE
Confidence 68999999999999999999998888754
No 23
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=35.08 E-value=28 Score=19.63 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHhhcCCCcEEE
Q psy111 59 LNMTEVLQTMMNTVSFGDKTLS 80 (85)
Q Consensus 59 ks~~~li~~Lv~~vskgGNlLL 80 (85)
.....+++.+.+++.+||-+.+
T Consensus 74 ~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCcCeEEeC
Confidence 4689999999999999998864
No 24
>PRK08317 hypothetical protein; Provisional
Probab=34.06 E-value=56 Score=21.83 Aligned_cols=25 Identities=8% Similarity=0.240 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHhhcCCCcEEEe
Q psy111 57 DILNMTEVLQTMMNTVSFGDKTLSI 81 (85)
Q Consensus 57 ~~ks~~~li~~Lv~~vskgGNlLLN 81 (85)
....+..+++.+.+++..||.+++-
T Consensus 99 ~~~~~~~~l~~~~~~L~~gG~l~~~ 123 (241)
T PRK08317 99 HLEDPARALAEIARVLRPGGRVVVL 123 (241)
T ss_pred ccCCHHHHHHHHHHHhcCCcEEEEE
Confidence 3456899999999999999999863
No 25
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=31.31 E-value=58 Score=24.49 Aligned_cols=25 Identities=8% Similarity=0.009 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHHhhcCCCcEEEe
Q psy111 57 DILNMTEVLQTMMNTVSFGDKTLSI 81 (85)
Q Consensus 57 ~~ks~~~li~~Lv~~vskgGNlLLN 81 (85)
++.++.+.++.+.+++.+||-|+|-
T Consensus 200 H~~dp~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 200 HRKSPLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred ccCCHHHHHHHHHHhcCCCCEEEEE
Confidence 4567899999999999999999984
No 26
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=30.35 E-value=69 Score=17.47 Aligned_cols=22 Identities=9% Similarity=0.108 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHhhcCCCcEEE
Q psy111 59 LNMTEVLQTMMNTVSFGDKTLS 80 (85)
Q Consensus 59 ks~~~li~~Lv~~vskgGNlLL 80 (85)
.....+++.+.+.+..||-+++
T Consensus 81 ~~~~~~l~~~~~~l~~~g~~~~ 102 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVL 102 (107)
T ss_pred hHHHHHHHHHHHHcCCCCEEEE
Confidence 3578999999999999998875
No 27
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=29.83 E-value=59 Score=22.46 Aligned_cols=33 Identities=12% Similarity=0.024 Sum_probs=17.5
Q ss_pred cccCCCCCCCCCHHHHHHHHHHhhcCCCcEEEe
Q psy111 49 YRRDANIDDILNMTEVLQTMMNTVSFGDKTLSI 81 (85)
Q Consensus 49 Y~~~~~~~~~ks~~~li~~Lv~~vskgGNlLLN 81 (85)
|.---.+..+.-..+..+.|.+-|..||.|++-
T Consensus 58 Ykllv~P~~~~l~~~~~~~L~~yV~~GG~li~~ 90 (207)
T PF08532_consen 58 YKLLVLPSLYILSPEFAERLRAYVENGGTLILT 90 (207)
T ss_dssp -SEEEES--SC--HHH---HHHHHT-SS-EEE-
T ss_pred CcEEEEeeEEEEChHHHHHHHHHHHCCCEEEEE
Confidence 554344455778899999999999999999974
No 28
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=29.67 E-value=39 Score=22.47 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhcCCCcEEEeccC
Q psy111 61 MTEVLQTMMNTVSFGDKTLSILFS 84 (85)
Q Consensus 61 ~~~li~~Lv~~vskgGNlLLNIG~ 84 (85)
..+++..+.+++..||.+.++|+.
T Consensus 35 ~~~~~~~~~rvLk~~g~~~i~~~~ 58 (231)
T PF01555_consen 35 MEEWLKECYRVLKPGGSIFIFIDD 58 (231)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEE-C
T ss_pred HHHHHHHHHhhcCCCeeEEEEecc
Confidence 678889999999999999999874
No 29
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=29.30 E-value=67 Score=25.09 Aligned_cols=66 Identities=14% Similarity=0.098 Sum_probs=37.9
Q ss_pred ccCCccCCCCcCCCCCCCCCCccccccCCCCCcccccCCCCCCCCCHHHHHHHHHHhhcCCCcEEEeccC
Q psy111 15 KHGGYLTCEDKYNPGKFQSRKFENCFTLDKYSWGYRRDANIDDILNMTEVLQTMMNTVSFGDKTLSILFS 84 (85)
Q Consensus 15 ~~gdy~t~e~~~~p~~~~~~pWE~c~ti~~~sWGY~~~~~~~~~ks~~~li~~Lv~~vskgGNlLLNIG~ 84 (85)
.-|||.+-+++...+...... .+.=|-+..+|=.... +.+. .-+++++.+.+++++||.+|+=+.+
T Consensus 160 ytGD~~~~~~~l~~~a~~~~~--~DvLI~EsTYg~~~~~-~r~~-~e~~f~~~v~~~l~~GG~vlipafa 225 (427)
T COG1236 160 YTGDVKRRKDRLLNGAELPPC--IDVLIVESTYGDRLHP-NRDE-VERRFIESVKAALERGGTVLIPAFA 225 (427)
T ss_pred EEeccCCCcCCCCCccccCCC--CcEEEEecccCCccCC-CHHH-HHHHHHHHHHHHHhCCCEEEEeccc
Confidence 458888877655433222222 2222223566754322 1111 2334789999999999999986654
No 30
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=26.77 E-value=81 Score=22.68 Aligned_cols=24 Identities=8% Similarity=-0.021 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhhcCCCcEEEeccC
Q psy111 61 MTEVLQTMMNTVSFGDKTLSILFS 84 (85)
Q Consensus 61 ~~~li~~Lv~~vskgGNlLLNIG~ 84 (85)
..+.++.+.+.++.||-++++.++
T Consensus 165 ~~ef~~~~~~~L~pgG~lv~~~~~ 188 (270)
T TIGR00417 165 TKEFYELLKKALNEDGIFVAQSES 188 (270)
T ss_pred HHHHHHHHHHHhCCCcEEEEcCCC
Confidence 478889999999999999998765
No 31
>KOG1270|consensus
Probab=26.73 E-value=53 Score=24.89 Aligned_cols=25 Identities=8% Similarity=0.159 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHHHHHhhcCCCcEEE
Q psy111 56 DDILNMTEVLQTMMNTVSFGDKTLS 80 (85)
Q Consensus 56 ~~~ks~~~li~~Lv~~vskgGNlLL 80 (85)
++++.+.++++.|+..+..||.|.|
T Consensus 169 eHV~dp~~~l~~l~~~lkP~G~lfi 193 (282)
T KOG1270|consen 169 EHVKDPQEFLNCLSALLKPNGRLFI 193 (282)
T ss_pred HHHhCHHHHHHHHHHHhCCCCceEe
Confidence 5789999999999999999999987
No 32
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=26.47 E-value=1.2e+02 Score=25.34 Aligned_cols=38 Identities=16% Similarity=0.137 Sum_probs=27.7
Q ss_pred CCcccccC---CCCCCCCCHHHHHHHHHHhhcCCCcEEEec
Q psy111 45 YSWGYRRD---ANIDDILNMTEVLQTMMNTVSFGDKTLSIL 82 (85)
Q Consensus 45 ~sWGY~~~---~~~~~~ks~~~li~~Lv~~vskgGNlLLNI 82 (85)
.||||..- ...+.|-|++++.+.+-.+-+.|=..+|++
T Consensus 194 ~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~ 234 (628)
T COG0296 194 RSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDW 234 (628)
T ss_pred CCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 69999842 223579999999887777777776666654
No 33
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=26.05 E-value=74 Score=20.56 Aligned_cols=34 Identities=18% Similarity=0.087 Sum_probs=24.3
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHhhcCCCcEEEe
Q psy111 48 GYRRDANIDDILNMTEVLQTMMNTVSFGDKTLSI 81 (85)
Q Consensus 48 GY~~~~~~~~~ks~~~li~~Lv~~vskgGNlLLN 81 (85)
+|.----+.-+.-..+..+.|.+-|..||.+++-
T Consensus 53 ~y~~vi~P~~~~~~~~~~~~l~~~v~~GG~li~~ 86 (154)
T cd03143 53 GYKLVVLPDLYLLSDATAAALRAYVENGGTLVAG 86 (154)
T ss_pred cCCEEEECchhcCCHHHHHHHHHHHHCCCEEEEe
Confidence 4553333344555678899999999999988763
No 34
>PF14250 AbrB-like: AbrB-like transcriptional regulator
Probab=25.60 E-value=34 Score=20.77 Aligned_cols=11 Identities=18% Similarity=-0.070 Sum_probs=8.3
Q ss_pred hhcCCCcEEEe
Q psy111 71 TVSFGDKTLSI 81 (85)
Q Consensus 71 ~vskgGNlLLN 81 (85)
.|-+|||||+.
T Consensus 34 ~Vq~NGnLLIG 44 (71)
T PF14250_consen 34 SVQGNGNLLIG 44 (71)
T ss_pred EEecCCCEEEc
Confidence 36789999863
No 35
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=25.16 E-value=95 Score=20.75 Aligned_cols=22 Identities=5% Similarity=-0.026 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhcCCCcEEEec
Q psy111 61 MTEVLQTMMNTVSFGDKTLSIL 82 (85)
Q Consensus 61 ~~~li~~Lv~~vskgGNlLLNI 82 (85)
...+++.+.+++++||.+++.+
T Consensus 125 ~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 125 VELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred HHHHHHHHHHHccCCCEEEEEE
Confidence 3678999999999999999854
No 36
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=25.04 E-value=30 Score=21.73 Aligned_cols=25 Identities=12% Similarity=0.073 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHhhcCCCcEEEec
Q psy111 58 ILNMTEVLQTMMNTVSFGDKTLSIL 82 (85)
Q Consensus 58 ~ks~~~li~~Lv~~vskgGNlLLNI 82 (85)
...+.++++.|.+++..||-+++-+
T Consensus 91 ~~d~~~~l~~l~~~LkpgG~l~~~~ 115 (161)
T PF13489_consen 91 LPDPEEFLKELSRLLKPGGYLVISD 115 (161)
T ss_dssp SSHHHHHHHHHHHCEEEEEEEEEEE
T ss_pred cccHHHHHHHHHHhcCCCCEEEEEE
Confidence 3459999999999999999998864
No 37
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=24.66 E-value=92 Score=23.24 Aligned_cols=25 Identities=8% Similarity=0.048 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHHHhhcCCCcEEEe
Q psy111 57 DILNMTEVLQTMMNTVSFGDKTLSI 81 (85)
Q Consensus 57 ~~ks~~~li~~Lv~~vskgGNlLLN 81 (85)
+..++.++++.+.+++.+||-+++.
T Consensus 201 H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 201 HRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred ccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 3457899999999999999999875
No 38
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=24.24 E-value=1.2e+02 Score=20.25 Aligned_cols=34 Identities=12% Similarity=0.098 Sum_probs=23.2
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHhhcCCCcEEEe
Q psy111 48 GYRRDANIDDILNMTEVLQTMMNTVSFGDKTLSI 81 (85)
Q Consensus 48 GY~~~~~~~~~ks~~~li~~Lv~~vskgGNlLLN 81 (85)
.|+.+..+-...+++++++.+++.+..|.-+||-
T Consensus 125 ~w~~~~~D~~~~~~~~i~~~~~~~~~~g~Iil~H 158 (191)
T TIGR02764 125 HWSVDSRDWKNPGVESIVDRVVKNTKPGDIILLH 158 (191)
T ss_pred EecCCCCccCCCCHHHHHHHHHhcCCCCCEEEEe
Confidence 3443343333468899999999998877667765
No 39
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=24.10 E-value=1e+02 Score=20.30 Aligned_cols=23 Identities=9% Similarity=0.251 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHhhcCCCcEEE
Q psy111 58 ILNMTEVLQTMMNTVSFGDKTLS 80 (85)
Q Consensus 58 ~ks~~~li~~Lv~~vskgGNlLL 80 (85)
+....++++.+.+++..||.+++
T Consensus 57 ~~d~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 57 VVDRLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred CCCHHHHHHHHHHHcCcCeEEEE
Confidence 34688999999999999999974
No 40
>PF09173 eIF2_C: Initiation factor eIF2 gamma, C terminal; InterPro: IPR015256 This entry represents a domain which is found in the initiation factors eIF2 and EF-Tu, adopting a beta barrel structure with Greek key topology. It is required for formation of the ternary complex with GTP and initiator tRNA []. ; PDB: 1S0U_A 1KK1_A 1KK0_A 1KK2_A 1KJZ_A 1KK3_A 2D74_A 2DCU_A 3P3M_A 3V11_A ....
Probab=24.02 E-value=44 Score=20.89 Aligned_cols=16 Identities=13% Similarity=0.137 Sum_probs=10.1
Q ss_pred HHhhcCCCcEEEeccC
Q psy111 69 MNTVSFGDKTLSILFS 84 (85)
Q Consensus 69 v~~vskgGNlLLNIG~ 84 (85)
++-..+|=.|+|||||
T Consensus 24 v~~i~~~E~LmlnIGs 39 (88)
T PF09173_consen 24 VEPIKKGEVLMLNIGS 39 (88)
T ss_dssp -----TTEEEEEEETT
T ss_pred cccCCCCCEEEEEEcc
Confidence 4456788899999997
No 41
>KOG1709|consensus
Probab=23.95 E-value=75 Score=23.77 Aligned_cols=22 Identities=5% Similarity=0.037 Sum_probs=18.9
Q ss_pred HHHHHHHHhhcCCCcEEEeccC
Q psy111 63 EVLQTMMNTVSFGDKTLSILFS 84 (85)
Q Consensus 63 ~li~~Lv~~vskgGNlLLNIG~ 84 (85)
-+.+.+++++|-+|-=+||||-
T Consensus 89 piMha~A~ai~tkggrvLnVGF 110 (271)
T KOG1709|consen 89 PIMHALAEAISTKGGRVLNVGF 110 (271)
T ss_pred HHHHHHHHHHhhCCceEEEecc
Confidence 4778899999999999999984
No 42
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=23.95 E-value=89 Score=23.56 Aligned_cols=27 Identities=11% Similarity=0.071 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHHHHhhcCCCcEEEec
Q psy111 56 DDILNMTEVLQTMMNTVSFGDKTLSIL 82 (85)
Q Consensus 56 ~~~ks~~~li~~Lv~~vskgGNlLLNI 82 (85)
++...+.++++.+.+++..||-+++..
T Consensus 209 eHv~d~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 209 EHVANPAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred HhcCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 356678999999999999999999763
No 43
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=23.92 E-value=95 Score=22.98 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHHHHhhcCCCcEEE
Q psy111 56 DDILNMTEVLQTMMNTVSFGDKTLS 80 (85)
Q Consensus 56 ~~~ks~~~li~~Lv~~vskgGNlLL 80 (85)
+++-.++.+++.+...|+.||-+++
T Consensus 135 EHv~dp~~~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 135 EHVPDPESFLRACAKLVKPGGILFL 159 (243)
T ss_pred HccCCHHHHHHHHHHHcCCCcEEEE
Confidence 5788899999999999999999886
No 44
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=23.62 E-value=1e+02 Score=23.70 Aligned_cols=38 Identities=13% Similarity=0.238 Sum_probs=29.1
Q ss_pred CCccccccCCCCCcccccCCCCCCCCCHHHHHHHHHHhhcCCCcEEEe
Q psy111 34 RKFENCFTLDKYSWGYRRDANIDDILNMTEVLQTMMNTVSFGDKTLSI 81 (85)
Q Consensus 34 ~pWE~c~ti~~~sWGY~~~~~~~~~ks~~~li~~Lv~~vskgGNlLLN 81 (85)
..+-++..|| ==|+ -++|-+.++.|-+.+.+||-|+|-
T Consensus 181 ~~FDtVF~MG---VLYH-------rr~Pl~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 181 GAFDTVFSMG---VLYH-------RRSPLDHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred CCcCEEEEee---ehhc-------cCCHHHHHHHHHHhhCCCCEEEEE
Confidence 4466666665 2354 467999999999999999999984
No 45
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=23.48 E-value=1.1e+02 Score=21.57 Aligned_cols=24 Identities=8% Similarity=0.102 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHhhcCCCcEEEec
Q psy111 59 LNMTEVLQTMMNTVSFGDKTLSIL 82 (85)
Q Consensus 59 ks~~~li~~Lv~~vskgGNlLLNI 82 (85)
.....+++.+.+++..||-+++.+
T Consensus 103 ~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 103 PEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred CCHHHHHHHHHHhCCCCcEEEEEc
Confidence 357889999999999999999865
No 46
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=23.35 E-value=1.2e+02 Score=20.11 Aligned_cols=23 Identities=13% Similarity=0.346 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHHHhhcCCCcEEE
Q psy111 58 ILNMTEVLQTMMNTVSFGDKTLS 80 (85)
Q Consensus 58 ~ks~~~li~~Lv~~vskgGNlLL 80 (85)
...+.++++.+...++.||-+++
T Consensus 119 ~~~~~~~l~~~~~~L~~gG~l~~ 141 (223)
T TIGR01934 119 VTDIQKALREMYRVLKPGGRLVI 141 (223)
T ss_pred cccHHHHHHHHHHHcCCCcEEEE
Confidence 45688999999999999999876
No 47
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=22.91 E-value=1.7e+02 Score=23.85 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=28.8
Q ss_pred CCcccccCC---CCCCCCCHHHHHHHHHHhhcCCCcEEEec
Q psy111 45 YSWGYRRDA---NIDDILNMTEVLQTMMNTVSFGDKTLSIL 82 (85)
Q Consensus 45 ~sWGY~~~~---~~~~~ks~~~li~~Lv~~vskgGNlLLNI 82 (85)
.+|||.... .+..|-+++++.+++-.+-.+|=.++|++
T Consensus 186 ~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~ 226 (613)
T TIGR01515 186 GSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDW 226 (613)
T ss_pred CCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 579997432 23468889998888888888888888875
No 48
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=22.86 E-value=1.3e+02 Score=21.03 Aligned_cols=24 Identities=8% Similarity=0.138 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHhhcCCCcEEEec
Q psy111 59 LNMTEVLQTMMNTVSFGDKTLSIL 82 (85)
Q Consensus 59 ks~~~li~~Lv~~vskgGNlLLNI 82 (85)
+....+++.+.+++.+||-+++.+
T Consensus 107 ~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 107 PDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred CCHHHHHHHHHHhcCCCcEEEEEC
Confidence 346889999999999999999865
No 49
>PF05372 Delta_lysin: Delta lysin family; InterPro: IPR008034 Delta-lysin is a 26 amino acid, hemolytic peptide toxin secreted by Staphylococcus aureus. It is thought that delta-toxin forms an amphipathic helix upon binding to lipid bilayers []. The precise mode of action of delta-lysis is unclear.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region; PDB: 2KAM_A 2DTB_A 1DTC_A.
Probab=22.66 E-value=50 Score=16.01 Aligned_cols=15 Identities=13% Similarity=0.341 Sum_probs=10.3
Q ss_pred CHHHHHHHHHHhhcC
Q psy111 60 NMTEVLQTMMNTVSF 74 (85)
Q Consensus 60 s~~~li~~Lv~~vsk 74 (85)
+..++++.++++|.|
T Consensus 8 TIgdfvKlI~~TV~K 22 (25)
T PF05372_consen 8 TIGDFVKLIIETVKK 22 (25)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345777788887754
No 50
>TIGR03073 release_rtcB release factor H-coupled RctB family protein. Members of this family are related to RctB. RctB a protein of known structure but unknown function that often is encoded near RNA cyclase and therefore is suggested to be a tRNA or mRNA processing enzyme. This family of RctB-like proteins in encoded upstream of, and apparently is translationally coupled to, the putative peptide chain release factor RF-H (TIGR03072), product of the prfH gene. Note that a large deletion at the junction between this gene and the prfH gene in Escherichia coli K-12 marks both as probable pseudogenes.
Probab=22.17 E-value=31 Score=26.56 Aligned_cols=20 Identities=5% Similarity=0.207 Sum_probs=16.9
Q ss_pred cCCCCCCCCCHHHHHHHHHH
Q psy111 51 RDANIDDILNMTEVLQTMMN 70 (85)
Q Consensus 51 ~~~~~~~~ks~~~li~~Lv~ 70 (85)
.++.|..||+.+++|+.+.+
T Consensus 325 ~dEaP~AYKdi~~Vi~~~~~ 344 (356)
T TIGR03073 325 YEEAPEAYKSIDSVVGALLQ 344 (356)
T ss_pred cccChhccCCHHHHHHhhhh
Confidence 46788899999999999655
No 51
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=21.90 E-value=1.1e+02 Score=20.68 Aligned_cols=24 Identities=8% Similarity=0.178 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHhhcCCCcEEEe
Q psy111 58 ILNMTEVLQTMMNTVSFGDKTLSI 81 (85)
Q Consensus 58 ~ks~~~li~~Lv~~vskgGNlLLN 81 (85)
.....++++.+.+++..||-+++-
T Consensus 80 ~~~~~~~l~~~~~~LkpgG~l~i~ 103 (224)
T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLA 103 (224)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEE
Confidence 445789999999999999999873
No 52
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=21.57 E-value=1.1e+02 Score=25.46 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=28.5
Q ss_pred CCcccccCCCCCCCCCHHHHHHHHHHhhcCCCcEEEeccCC
Q psy111 45 YSWGYRRDANIDDILNMTEVLQTMMNTVSFGDKTLSILFSV 85 (85)
Q Consensus 45 ~sWGY~~~~~~~~~ks~~~li~~Lv~~vskgGNlLLNIG~~ 85 (85)
..+|=+.+..+..-...++|++.+-+++.+||.+|+=+-+|
T Consensus 378 sTYGg~~d~q~~R~eaE~~L~~vi~~t~~rGGKvLIP~fAV 418 (637)
T COG1782 378 STYGGRDDVQPPREEAEKELIKVINDTLKRGGKVLIPVFAV 418 (637)
T ss_pred eccCCccccCccHHHHHHHHHHHHHHHHhcCCeEEEEeeec
Confidence 46663333333344567788888999999999999876554
No 53
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=21.44 E-value=1.3e+02 Score=21.53 Aligned_cols=23 Identities=13% Similarity=0.280 Sum_probs=20.2
Q ss_pred CCCHHHHHHHHHHhhcCCCcEEE
Q psy111 58 ILNMTEVLQTMMNTVSFGDKTLS 80 (85)
Q Consensus 58 ~ks~~~li~~Lv~~vskgGNlLL 80 (85)
+..+.++++.+.+++..||.+++
T Consensus 158 ~~d~~~~l~ei~rvLkpGG~l~i 180 (261)
T PLN02233 158 VVDRLKAMQEMYRVLKPGSRVSI 180 (261)
T ss_pred CCCHHHHHHHHHHHcCcCcEEEE
Confidence 44689999999999999999865
No 54
>KOG1331|consensus
Probab=20.39 E-value=1.1e+02 Score=23.37 Aligned_cols=22 Identities=14% Similarity=0.308 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhcCCCcEEEec
Q psy111 61 MTEVLQTMMNTVSFGDKTLSIL 82 (85)
Q Consensus 61 ~~~li~~Lv~~vskgGNlLLNI 82 (85)
...+++.+++++-.|||.|+=+
T Consensus 122 R~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 122 RERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred HHHHHHHHHHHhcCCCceEEEE
Confidence 5789999999999999999744
No 55
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=20.22 E-value=1.1e+02 Score=21.64 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.7
Q ss_pred CCHHHHHHHHHHhhcCCCcEEE
Q psy111 59 LNMTEVLQTMMNTVSFGDKTLS 80 (85)
Q Consensus 59 ks~~~li~~Lv~~vskgGNlLL 80 (85)
..+.++++.+.+++.+||-+++
T Consensus 126 ~~~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 126 ADPKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred CCHHHHHHHHHHHcCCCeEEEE
Confidence 4578999999999999999976
No 56
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=20.17 E-value=1.4e+02 Score=20.37 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHhhcCCCcEEE
Q psy111 58 ILNMTEVLQTMMNTVSFGDKTLS 80 (85)
Q Consensus 58 ~ks~~~li~~Lv~~vskgGNlLL 80 (85)
.....++++.+.+++.+||.+++
T Consensus 127 ~~~~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 127 VPDYMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred CCCHHHHHHHHHHHcCcCeEEEE
Confidence 34577899999999999999875
No 57
>PF11334 DUF3136: Protein of unknown function (DUF3136); InterPro: IPR021483 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=20.17 E-value=87 Score=18.64 Aligned_cols=15 Identities=0% Similarity=-0.148 Sum_probs=12.1
Q ss_pred CCCCCCHHHHHHHHH
Q psy111 55 IDDILNMTEVLQTMM 69 (85)
Q Consensus 55 ~~~~ks~~~li~~Lv 69 (85)
+..||||+.|+..|-
T Consensus 47 P~~YksP~~L~~~~q 61 (64)
T PF11334_consen 47 PRRYKSPEYLMLLLQ 61 (64)
T ss_pred ccccCCHHHHHHHHh
Confidence 467999999987763
No 58
>PF06026 Rib_5-P_isom_A: Ribose 5-phosphate isomerase A (phosphoriboisomerase A); InterPro: IPR004788 Ribose 5-phosphate isomerase, also known as phosphoriboisomerase, catalyses the reversible conversion of D-ribose 5-phosphate to D-ribulose 5-phosphate, the first step in the non-oxidative branch of the pentose phosphate pathway []. This reaction enables ribose to be synthesized from sugars, as well as the recycling of sugars during the degradation of nucleotides. There are two unrelated types of ribose 5-phosphate isomerases: type A (RpiA) is the most common and is found in most organisms, while type B (RpiB) is restricted to specific eukaryotic and prokaryotic species. Escherichia coli produces both RpiA and RpiB (also known as AlsB), although RpiA accounts for 99% of total RPI enzymes []. This entry represents type A (RpiA) enzymes found in eukaryotes (plants, Metazoa and fungi), bacteria and archaea.; GO: 0004751 ribose-5-phosphate isomerase activity, 0009052 pentose-phosphate shunt, non-oxidative branch; PDB: 1M0S_B 3HHE_B 1LKZ_B 1KS2_A 1O8B_A 3UW1_A 3U7J_A 3L7O_A 1XTZ_A 1UJ6_A ....
Probab=20.16 E-value=57 Score=22.65 Aligned_cols=12 Identities=8% Similarity=-0.100 Sum_probs=8.1
Q ss_pred hhcCCCcEEEec
Q psy111 71 TVSFGDKTLSIL 82 (85)
Q Consensus 71 ~vskgGNlLLNI 82 (85)
+++.|||++|++
T Consensus 119 ~vTDnGN~IlD~ 130 (173)
T PF06026_consen 119 FVTDNGNYILDV 130 (173)
T ss_dssp -B-TTS-EEEEE
T ss_pred EEeCCCCEEEEe
Confidence 788899999986
No 59
>PRK07402 precorrin-6B methylase; Provisional
Probab=20.10 E-value=1.5e+02 Score=19.97 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHhhcCCCcEEEeccC
Q psy111 60 NMTEVLQTMMNTVSFGDKTLSILFS 84 (85)
Q Consensus 60 s~~~li~~Lv~~vskgGNlLLNIG~ 84 (85)
...++++.+.+.+..||.+++...+
T Consensus 120 ~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 120 PIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred CHHHHHHHHHHhcCCCeEEEEEeec
Confidence 4578999999999999999987643
No 60
>PLN02244 tocopherol O-methyltransferase
Probab=20.07 E-value=1.3e+02 Score=22.50 Aligned_cols=24 Identities=8% Similarity=0.231 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHHhhcCCCcEEE
Q psy111 57 DILNMTEVLQTMMNTVSFGDKTLS 80 (85)
Q Consensus 57 ~~ks~~~li~~Lv~~vskgGNlLL 80 (85)
++....++++.+.+++..||.+++
T Consensus 198 h~~d~~~~l~e~~rvLkpGG~lvi 221 (340)
T PLN02244 198 HMPDKRKFVQELARVAAPGGRIII 221 (340)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEE
Confidence 455678999999999999999987
No 61
>PRK04457 spermidine synthase; Provisional
Probab=20.07 E-value=1.2e+02 Score=21.91 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHhhcCCCcEEEecc
Q psy111 59 LNMTEVLQTMMNTVSFGDKTLSILF 83 (85)
Q Consensus 59 ks~~~li~~Lv~~vskgGNlLLNIG 83 (85)
....++++.+.++++.||-|++|+.
T Consensus 154 l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 154 LCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred cCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 3468999999999999999999964
Done!