Query psy111
Match_columns 85
No_of_seqs 114 out of 659
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 17:57:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy111.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/111hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zxd_A Alpha-L-fucosidase, put 99.9 6.3E-25 2.2E-29 169.0 5.3 79 1-84 248-327 (455)
2 2wvv_A Alpha-L-fucosidase; alp 99.9 2.1E-23 7E-28 160.1 7.3 82 1-83 222-318 (450)
3 3eyp_A Putative alpha-L-fucosi 99.8 1.6E-19 5.5E-24 139.4 4.3 77 5-83 205-297 (469)
4 3gza_A Putative alpha-L-fucosi 99.7 8.2E-19 2.8E-23 134.9 4.7 50 33-83 265-318 (443)
5 3ues_A Alpha-1,3/4-fucosidase; 99.7 2.7E-18 9.2E-23 132.9 4.7 48 34-83 278-325 (478)
6 2dt6_A Splicing factor 3 subun 42.9 6.9 0.00024 21.8 0.6 17 61-77 3-19 (64)
7 2nyg_A YOKD protein; PFAM02522 42.3 20 0.00068 25.5 3.1 28 46-80 41-68 (273)
8 1x4o_A Splicing factor 4; stru 42.0 13 0.00043 21.6 1.7 17 61-77 17-33 (78)
9 3sma_A FRBF; N-acetyl transfer 40.0 23 0.00077 25.6 3.0 29 45-80 49-77 (286)
10 3ijw_A Aminoglycoside N3-acety 39.8 23 0.00079 25.2 3.1 28 46-80 43-70 (268)
11 1ssz_A Pulmonary surfactant-as 39.2 16 0.00055 18.0 1.5 18 62-79 5-22 (34)
12 2e5z_A SFRS8 protein, splicing 38.6 14 0.00047 22.3 1.5 17 61-77 24-40 (90)
13 3i9f_A Putative type 11 methyl 32.4 26 0.0009 21.3 2.1 24 58-81 88-111 (170)
14 1ug0_A Splicing factor 4; SURP 31.3 17 0.00057 21.6 1.0 17 61-77 27-43 (88)
15 2gs9_A Hypothetical protein TT 29.1 34 0.0012 21.5 2.3 25 58-82 108-132 (211)
16 3mky_B Protein SOPB; partition 28.2 31 0.0011 23.5 2.0 24 59-83 142-165 (189)
17 3dlc_A Putative S-adenosyl-L-m 25.0 31 0.0011 21.5 1.5 24 58-81 124-147 (219)
18 2e60_A SFRS8 protein, splicing 24.8 32 0.0011 20.9 1.5 17 61-77 27-43 (101)
19 3d2l_A SAM-dependent methyltra 23.7 36 0.0012 21.8 1.7 23 60-82 115-137 (243)
20 3l8d_A Methyltransferase; stru 23.5 49 0.0017 21.1 2.3 25 58-82 129-153 (242)
21 2b2c_A Spermidine synthase; be 23.4 33 0.0011 24.3 1.5 24 62-85 202-225 (314)
22 3ggd_A SAM-dependent methyltra 23.4 69 0.0023 20.6 3.0 22 60-81 141-162 (245)
23 3cgg_A SAM-dependent methyltra 23.3 39 0.0013 20.6 1.7 23 61-83 126-148 (195)
24 3g5l_A Putative S-adenosylmeth 23.0 38 0.0013 22.0 1.7 24 59-82 122-145 (253)
25 3bkw_A MLL3908 protein, S-aden 22.1 41 0.0014 21.5 1.7 24 59-82 121-144 (243)
26 2dwf_A Pulmonary surfactant-as 21.6 50 0.0017 16.5 1.5 18 62-79 5-22 (34)
27 3hnr_A Probable methyltransfer 21.6 67 0.0023 20.2 2.6 19 64-82 127-145 (220)
28 1kpg_A CFA synthase;, cyclopro 21.5 78 0.0027 21.0 3.1 24 59-82 145-168 (287)
29 2ld4_A Anamorsin; methyltransf 21.2 40 0.0014 20.7 1.4 21 60-80 79-99 (176)
30 3hm2_A Precorrin-6Y C5,15-meth 21.0 58 0.002 19.6 2.2 22 62-83 107-128 (178)
31 2pxx_A Uncharacterized protein 20.9 42 0.0014 20.9 1.5 23 60-82 137-159 (215)
32 3h2b_A SAM-dependent methyltra 20.8 48 0.0016 20.7 1.8 23 60-82 119-141 (203)
33 1vlm_A SAM-dependent methyltra 20.7 42 0.0015 21.4 1.5 24 59-82 116-139 (219)
34 2p7i_A Hypothetical protein; p 20.5 30 0.001 22.0 0.8 25 58-82 116-141 (250)
35 3rqz_A Metallophosphoesterase; 20.4 43 0.0015 22.2 1.6 11 75-85 181-191 (246)
36 1dtc_A Acetyl-delta-toxin; NMR 20.3 38 0.0013 15.9 0.9 15 60-74 8-22 (26)
37 3e05_A Precorrin-6Y C5,15-meth 20.2 98 0.0034 19.3 3.2 23 60-82 120-142 (204)
No 1
>2zxd_A Alpha-L-fucosidase, putative; TIM barrel, hydrolase; HET: ZXD; 2.15A {Thermotoga maritima} PDB: 2zwy_A* 2zx5_A* 2zx6_A* 2zx7_A* 2zwz_A* 2zx9_A* 2zxa_A* 2zxb_A* 2zx8_A* 1hl9_A* 1hl8_A* 1odu_A* 2wsp_A*
Probab=99.90 E-value=6.3e-25 Score=168.98 Aligned_cols=79 Identities=29% Similarity=0.464 Sum_probs=71.7
Q ss_pred CEEEcCCCCCCCCcccCCccCCCCcCC-CCCCCCCCccccccCCCCCcccccCCCCCCCCCHHHHHHHHHHhhcCCCcEE
Q psy111 1 SVVVNDRWCNTCLCKHGGYLTCEDKYN-PGKFQSRKFENCFTLDKYSWGYRRDANIDDILNMTEVLQTMMNTVSFGDKTL 79 (85)
Q Consensus 1 ~vvvNdR~g~~~~~~~gdy~t~e~~~~-p~~~~~~pWE~c~ti~~~sWGY~~~~~~~~~ks~~~li~~Lv~~vskgGNlL 79 (85)
+||||+|||.. +|||.|+|+... |+.+...|||+|+||+ .||||++++.+.+|||+++||++|+++||||||||
T Consensus 248 ~~vvn~R~g~~----~gd~~t~e~~~~~~~~~~~~~WE~~~ti~-~sWgY~~~~~~~~~ks~~~Li~~lv~~VskgGnlL 322 (455)
T 2zxd_A 248 EGSVNDRWGVP----HWDFKTAEYHVNYPGDLPGYKWEFTRGIG-LSFGYNRNEGPEHMLSVEQLVYTLVDVVSKGGNLL 322 (455)
T ss_dssp TCCBCSCSSSS----CCSSEEEBTTBBCCSSCCSSCEEEEEESS-SCSSCCTTCCGGGSCCHHHHHHHHHHHHHTTEEEE
T ss_pred CEEEEcccCCC----cccccccccccCCcCcCCCCCceeeeeEC-CCCCcCCCCCccCcCCHHHHHHHHHHHHhcCCeEE
Confidence 47899999854 899999998765 8788899999999999 89999998766789999999999999999999999
Q ss_pred EeccC
Q psy111 80 SILFS 84 (85)
Q Consensus 80 LNIG~ 84 (85)
||||-
T Consensus 323 LNvgP 327 (455)
T 2zxd_A 323 LNVGP 327 (455)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99983
No 2
>2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase family 29; 1.73A {Bacteroides thetaiotaomicron} PDB: 2xii_A* 2xib_A* 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A*
Probab=99.88 E-value=2.1e-23 Score=160.14 Aligned_cols=82 Identities=23% Similarity=0.407 Sum_probs=68.5
Q ss_pred CEEEcCCCCCCC---------CcccCCccC-CCCcCCCCCC-----CCCCccccccCCCCCcccccCCCCCCCCCHHHHH
Q psy111 1 SVVVNDRWCNTC---------LCKHGGYLT-CEDKYNPGKF-----QSRKFENCFTLDKYSWGYRRDANIDDILNMTEVL 65 (85)
Q Consensus 1 ~vvvNdR~g~~~---------~~~~gdy~t-~e~~~~p~~~-----~~~pWE~c~ti~~~sWGY~~~~~~~~~ks~~~li 65 (85)
+||||+||+.+. .+.+|||.| +|+ ..|... ...|||+|+||++.||||++++....|||+++||
T Consensus 222 ~~vv~~r~~~~~~g~~~~~~~~~~~gD~~t~~e~-~~p~~~~~~~~~~~pwE~~~ti~~~sWgY~~~~~~~~~ks~~~Li 300 (450)
T 2wvv_A 222 GVAINSRLRADDKGKRHFDSNGRLMGDYESGYER-RLPDPVKDLKVTQWDWEACMTIPENQWGYHKDWSLSYVKTPIEVI 300 (450)
T ss_dssp TCEEBGGGCBCTTSCBSBCTTSCBCSSBBCCCBS-CCCCTTTCGGGGGSCBEEEECSBSSCCSCCSCGGGSCBCCHHHHH
T ss_pred cEEEEcccCCCccccccccccccccCCccccccc-cCCccccccCCCcccceeeeeeCCCCccccCCCCccccCCHHHHH
Confidence 489999998652 245789999 776 466532 3579999999996699999876546899999999
Q ss_pred HHHHHhhcCCCcEEEecc
Q psy111 66 QTMMNTVSFGDKTLSILF 83 (85)
Q Consensus 66 ~~Lv~~vskgGNlLLNIG 83 (85)
++|+++||||||||||||
T Consensus 301 ~~lv~~VskgGnlLLNvg 318 (450)
T 2wvv_A 301 DRIVHAVSMGGNMVVNFG 318 (450)
T ss_dssp HHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHhcCCceEEEeeC
Confidence 999999999999999998
No 3
>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase, lipoprotein, PSI-2, protein initiative; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.77 E-value=1.6e-19 Score=139.36 Aligned_cols=77 Identities=13% Similarity=0.087 Sum_probs=58.4
Q ss_pred cCCCCCCCCcccCC----ccCCCC------------cCCCCCCCCCCccccccCCCCCcccccCCCCCCCCCHHHHHHHH
Q psy111 5 NDRWCNTCLCKHGG----YLTCED------------KYNPGKFQSRKFENCFTLDKYSWGYRRDANIDDILNMTEVLQTM 68 (85)
Q Consensus 5 NdR~g~~~~~~~gd----y~t~e~------------~~~p~~~~~~pWE~c~ti~~~sWGY~~~~~~~~~ks~~~li~~L 68 (85)
|.||+.++.+..|+ +.|++. +..+......|||+|+||+ .||||+++ .+..|||+++||++|
T Consensus 205 ~~Rw~g~e~g~~~~~~w~~~~~~~~~~~~~~~~~~~~G~~~~~~~~pwE~~~ti~-~~W~y~~~-~~~~~ks~~~li~~l 282 (469)
T 3eyp_A 205 DVRWMGNEAGEAGDPCWATTDSVAIRDEAQYYKGLNEGMLDGDAYIPAETDVSIR-PSWFYHAE-EDSRVKSVRELWDIY 282 (469)
T ss_dssp SBBCCSCSSSCCCSSCCSEECHHHHHTGGGCHHHHHTCCTTCSEECCBEEEEESS-SSSSCCGG-GGGGCCCHHHHHHHH
T ss_pred ccccccccccccCCcccceecccccccCcccccccccCCcCCCCCCccceeeccC-CccCcCcC-CcCCcCCHHHHHHHH
Confidence 77886665555553 344431 1122233458999999998 89999986 346899999999999
Q ss_pred HHhhcCCCcEEEecc
Q psy111 69 MNTVSFGDKTLSILF 83 (85)
Q Consensus 69 v~~vskgGNlLLNIG 83 (85)
+++||||||||||||
T Consensus 283 ~~~Vs~~gnlLLNvg 297 (469)
T 3eyp_A 283 CTSVGRNSVLLLNFP 297 (469)
T ss_dssp HTTTTBTSEEEEECC
T ss_pred HHHhcCCCcEEEccC
Confidence 999999999999998
No 4
>3gza_A Putative alpha-L-fucosidase; NP_812709.1, structural genomic center for structural genomics, JCSG; HET: MSE EPE; 1.60A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.74 E-value=8.2e-19 Score=134.88 Aligned_cols=50 Identities=12% Similarity=0.113 Sum_probs=44.7
Q ss_pred CCCccccccCCC----CCcccccCCCCCCCCCHHHHHHHHHHhhcCCCcEEEecc
Q psy111 33 SRKFENCFTLDK----YSWGYRRDANIDDILNMTEVLQTMMNTVSFGDKTLSILF 83 (85)
Q Consensus 33 ~~pWE~c~ti~~----~sWGY~~~~~~~~~ks~~~li~~Lv~~vskgGNlLLNIG 83 (85)
-.|||+|+||++ +||||++++. .+|||+++||++|+++||||||||||||
T Consensus 265 w~p~E~d~ti~~~n~~~sW~y~~~~~-~~~ks~~~Li~~l~~sV~~ngnLLLNVg 318 (443)
T 3gza_A 265 WVPAMADTPLRGANGRHEWFWEPDDE-NNIYPLNTLMDKYEKSVGRNATLILGLT 318 (443)
T ss_dssp ECCEEEEEESBCCTTCCBSSCCTTCG-GGSCCHHHHHHHHHTTTTBTCEEEEEEC
T ss_pred cccceeeccccCCCCCCccCCccCCc-ccCCCHHHHHHHHHHHhcCCceEEEecC
Confidence 378999999994 3999998653 5699999999999999999999999998
No 5
>3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor complex; HET: DFU; 1.60A {Bifidobacterium longum subsp} PDB: 3mo4_A* 3uet_A*
Probab=99.72 E-value=2.7e-18 Score=132.94 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=44.3
Q ss_pred CCccccccCCCCCcccccCCCCCCCCCHHHHHHHHHHhhcCCCcEEEecc
Q psy111 34 RKFENCFTLDKYSWGYRRDANIDDILNMTEVLQTMMNTVSFGDKTLSILF 83 (85)
Q Consensus 34 ~pWE~c~ti~~~sWGY~~~~~~~~~ks~~~li~~Lv~~vskgGNlLLNIG 83 (85)
.|||+|+||+ .+|||++.+ +..|||+++||++|+++||||||||||||
T Consensus 278 ~P~E~~~ti~-~~W~y~~~~-d~~~ks~~~li~~l~~~V~~ngnlLLNvg 325 (478)
T 3ues_A 278 YPAEVDTSIR-PGWFYHQSE-DDKVMSADQLFDLWLSAVGGNSSLLLNIP 325 (478)
T ss_dssp CCEEEEEESS-SSSSCCGGG-TTCCCCHHHHHHHHHHHHTBTEEEEEECC
T ss_pred CccccccccC-CCCCCCcCC-CCCcCCHHHHHHHHHHHhccCceEEECCC
Confidence 6889999999 899999853 45799999999999999999999999998
No 6
>2dt6_A Splicing factor 3 subunit 1; structure genomics, SF3A120, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.217.1.1
Probab=42.92 E-value=6.9 Score=21.85 Aligned_cols=17 Identities=6% Similarity=0.135 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhhcCCCc
Q psy111 61 MTEVLQTMMNTVSFGDK 77 (85)
Q Consensus 61 ~~~li~~Lv~~vskgGN 77 (85)
...+|+.++.-|+++|-
T Consensus 3 i~~iI~ktA~fVarnG~ 19 (64)
T 2dt6_A 3 VRNIVDKTASFVARNGP 19 (64)
T ss_dssp HHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCH
Confidence 57899999999999984
No 7
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=42.34 E-value=20 Score=25.51 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=23.8
Q ss_pred CcccccCCCCCCCCCHHHHHHHHHHhhcCCCcEEE
Q psy111 46 SWGYRRDANIDDILNMTEVLQTMMNTVSFGDKTLS 80 (85)
Q Consensus 46 sWGY~~~~~~~~~ks~~~li~~Lv~~vskgGNlLL 80 (85)
+.||-. ..+..+|+.|.++|...|.|++
T Consensus 41 ~lG~v~-------gg~~~vi~AL~~~vg~~GTLvm 68 (273)
T 2nyg_A 41 SIGWVN-------GGAVAVIQALIDVVTEEGTIVM 68 (273)
T ss_dssp GGCCBT-------THHHHHHHHHHHHHTTTSEEEE
T ss_pred HhCCCC-------CCHHHHHHHHHHHhCCCCeEEE
Confidence 677752 3499999999999999999987
No 8
>1x4o_A Splicing factor 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.217.1.1
Probab=42.02 E-value=13 Score=21.62 Aligned_cols=17 Identities=6% Similarity=0.173 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhhcCCCc
Q psy111 61 MTEVLQTMMNTVSFGDK 77 (85)
Q Consensus 61 ~~~li~~Lv~~vskgGN 77 (85)
...+|+.++.-|+|+|-
T Consensus 17 ~~~iIdktA~fVaknG~ 33 (78)
T 1x4o_A 17 AKNLAEKLARFIADGGP 33 (78)
T ss_dssp HHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHcCH
Confidence 57899999999999984
No 9
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=39.99 E-value=23 Score=25.62 Aligned_cols=29 Identities=10% Similarity=0.095 Sum_probs=24.4
Q ss_pred CCcccccCCCCCCCCCHHHHHHHHHHhhcCCCcEEE
Q psy111 45 YSWGYRRDANIDDILNMTEVLQTMMNTVSFGDKTLS 80 (85)
Q Consensus 45 ~sWGY~~~~~~~~~ks~~~li~~Lv~~vskgGNlLL 80 (85)
.+.||.. ..++.+|+.|.++|.+.|.|++
T Consensus 49 ~~lG~v~-------Gga~~vi~AL~~~vg~~GTLvm 77 (286)
T 3sma_A 49 SALGWVC-------GGAQAVVLALQDAVGKEGTLVM 77 (286)
T ss_dssp TTSCEET-------THHHHHHHHHHHHHCTTCEEEE
T ss_pred HHhCCCC-------CCHHHHHHHHHHHhcCCCEEEE
Confidence 3788863 2489999999999999999987
No 10
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=39.79 E-value=23 Score=25.21 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=23.6
Q ss_pred CcccccCCCCCCCCCHHHHHHHHHHhhcCCCcEEE
Q psy111 46 SWGYRRDANIDDILNMTEVLQTMMNTVSFGDKTLS 80 (85)
Q Consensus 46 sWGY~~~~~~~~~ks~~~li~~Lv~~vskgGNlLL 80 (85)
+.||.. ..++.+|+.|.++|...|.|++
T Consensus 43 ~lG~v~-------gg~~~vi~AL~~~vg~~GTLvm 70 (268)
T 3ijw_A 43 SIGWIS-------GGAVAVVEALMEVITEEGTIIM 70 (268)
T ss_dssp GGCCBT-------THHHHHHHHHHHHHCTTSEEEE
T ss_pred HhCCCC-------CCHHHHHHHHHHHhCCCCeEEE
Confidence 677753 2489999999999999999986
No 11
>1ssz_A Pulmonary surfactant-associated protein B; LUNG surfactant protein, saposin, surface active protein; NMR {Synthetic}
Probab=39.21 E-value=16 Score=18.04 Aligned_cols=18 Identities=11% Similarity=0.359 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhcCCCcEE
Q psy111 62 TEVLQTMMNTVSFGDKTL 79 (85)
Q Consensus 62 ~~li~~Lv~~vskgGNlL 79 (85)
..+|+.+-.++.|+|.+|
T Consensus 5 r~likriqa~ipk~grml 22 (34)
T 1ssz_A 5 RALIKRIQAMIPKGGRML 22 (34)
T ss_dssp HHHHHHHHHHCSSSCCCC
T ss_pred HHHHHHHHHHccccchhh
Confidence 467888888999999886
No 12
>2e5z_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.65 E-value=14 Score=22.35 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhcCCCc
Q psy111 61 MTEVLQTMMNTVSFGDK 77 (85)
Q Consensus 61 ~~~li~~Lv~~vskgGN 77 (85)
...+|+.+++-|+|||-
T Consensus 24 ir~iIdktA~fVaknG~ 40 (90)
T 2e5z_A 24 VQPVIDKLAEYVARNGL 40 (90)
T ss_dssp THHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHccH
Confidence 58999999999999994
No 13
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=32.41 E-value=26 Score=21.28 Aligned_cols=24 Identities=8% Similarity=0.157 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHHhhcCCCcEEEe
Q psy111 58 ILNMTEVLQTMMNTVSFGDKTLSI 81 (85)
Q Consensus 58 ~ks~~~li~~Lv~~vskgGNlLLN 81 (85)
......+++.+.+++..||.+++-
T Consensus 88 ~~~~~~~l~~~~~~L~pgG~l~~~ 111 (170)
T 3i9f_A 88 MDDKQHVISEVKRILKDDGRVIII 111 (170)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCHHHHHHHHHHhcCCCCEEEEE
Confidence 346889999999999999999875
No 14
>1ug0_A Splicing factor 4; SURP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: a.217.1.1
Probab=31.35 E-value=17 Score=21.65 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhhcCCCc
Q psy111 61 MTEVLQTMMNTVSFGDK 77 (85)
Q Consensus 61 ~~~li~~Lv~~vskgGN 77 (85)
...+|+.++.-|+|+|-
T Consensus 27 ~~~iIdktA~fVaknG~ 43 (88)
T 1ug0_A 27 TRRVIEKLARFVAEGGP 43 (88)
T ss_dssp HHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHcCH
Confidence 57899999999999983
No 15
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}
Probab=29.09 E-value=34 Score=21.54 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHhhcCCCcEEEec
Q psy111 58 ILNMTEVLQTMMNTVSFGDKTLSIL 82 (85)
Q Consensus 58 ~ks~~~li~~Lv~~vskgGNlLLNI 82 (85)
...+.++++.+.+++..||.+++.+
T Consensus 108 ~~~~~~~l~~~~~~L~pgG~l~i~~ 132 (211)
T 2gs9_A 108 VEDVERVLLEARRVLRPGGALVVGV 132 (211)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEEe
Confidence 4468899999999999999999864
No 16
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=28.20 E-value=31 Score=23.52 Aligned_cols=24 Identities=17% Similarity=0.041 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHhhcCCCcEEEecc
Q psy111 59 LNMTEVLQTMMNTVSFGDKTLSILF 83 (85)
Q Consensus 59 ks~~~li~~Lv~~vskgGNlLLNIG 83 (85)
+++.++..- +.+..+||++.||+-
T Consensus 142 ~~~~~l~~G-at~~~kG~kl~L~l~ 165 (189)
T 3mky_B 142 SSRHQFAPG-ATVLYKGDKMVLNLD 165 (189)
T ss_dssp -------------------------
T ss_pred CCCeecccc-eEEEecCCeEEEecC
Confidence 344444442 555558999999873
No 17
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}
Probab=24.96 E-value=31 Score=21.52 Aligned_cols=24 Identities=13% Similarity=0.147 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHhhcCCCcEEEe
Q psy111 58 ILNMTEVLQTMMNTVSFGDKTLSI 81 (85)
Q Consensus 58 ~ks~~~li~~Lv~~vskgGNlLLN 81 (85)
+..+.++++.+.+++..||-+++.
T Consensus 124 ~~~~~~~l~~~~~~L~pgG~l~~~ 147 (219)
T 3dlc_A 124 WEDVATAFREIYRILKSGGKTYIG 147 (219)
T ss_dssp CSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCHHHHHHHHHHhCCCCCEEEEE
Confidence 345889999999999999999985
No 18
>2e60_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.85 E-value=32 Score=20.95 Aligned_cols=17 Identities=12% Similarity=0.155 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhhcCCCc
Q psy111 61 MTEVLQTMMNTVSFGDK 77 (85)
Q Consensus 61 ~~~li~~Lv~~vskgGN 77 (85)
...||+.++.-|+|+|-
T Consensus 27 ~~~iI~ktA~fVarnG~ 43 (101)
T 2e60_A 27 MHAIIERTASFVCRQGA 43 (101)
T ss_dssp HHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHhCH
Confidence 67899999999999984
No 19
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Probab=23.74 E-value=36 Score=21.76 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHhhcCCCcEEEec
Q psy111 60 NMTEVLQTMMNTVSFGDKTLSIL 82 (85)
Q Consensus 60 s~~~li~~Lv~~vskgGNlLLNI 82 (85)
...++++.+.+++.+||-+++.+
T Consensus 115 ~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 115 DVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCeEEEEEc
Confidence 46778899999999999999865
No 20
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}
Probab=23.50 E-value=49 Score=21.15 Aligned_cols=25 Identities=4% Similarity=-0.040 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHhhcCCCcEEEec
Q psy111 58 ILNMTEVLQTMMNTVSFGDKTLSIL 82 (85)
Q Consensus 58 ~ks~~~li~~Lv~~vskgGNlLLNI 82 (85)
...+..+++.+.+++..||.+++..
T Consensus 129 ~~~~~~~l~~~~~~L~pgG~l~i~~ 153 (242)
T 3l8d_A 129 TEEPLRALNEIKRVLKSDGYACIAI 153 (242)
T ss_dssp SSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCHHHHHHHHHHHhCCCeEEEEEE
Confidence 4567899999999999999999865
No 21
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=23.36 E-value=33 Score=24.26 Aligned_cols=24 Identities=13% Similarity=-0.085 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhcCCCcEEEeccCC
Q psy111 62 TEVLQTMMNTVSFGDKTLSILFSV 85 (85)
Q Consensus 62 ~~li~~Lv~~vskgGNlLLNIG~~ 85 (85)
.++++.+.++++.||-|+++.|++
T Consensus 202 ~~~l~~~~~~LkpgG~lv~~~~~~ 225 (314)
T 2b2c_A 202 QSYYELLRDALKEDGILSSQGESV 225 (314)
T ss_dssp --HHHHHHHHEEEEEEEEEECCCT
T ss_pred HHHHHHHHhhcCCCeEEEEECCCc
Confidence 789999999999999999998763
No 22
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}
Probab=23.35 E-value=69 Score=20.63 Aligned_cols=22 Identities=9% Similarity=-0.093 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHhhcCCCcEEEe
Q psy111 60 NMTEVLQTMMNTVSFGDKTLSI 81 (85)
Q Consensus 60 s~~~li~~Lv~~vskgGNlLLN 81 (85)
....+++.+.+++..||.|++-
T Consensus 141 ~~~~~l~~~~~~LkpgG~l~i~ 162 (245)
T 3ggd_A 141 KRELLGQSLRILLGKQGAMYLI 162 (245)
T ss_dssp GHHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHHHHcCCCCEEEEE
Confidence 4689999999999999997653
No 23
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=23.33 E-value=39 Score=20.57 Aligned_cols=23 Identities=4% Similarity=0.001 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhcCCCcEEEecc
Q psy111 61 MTEVLQTMMNTVSFGDKTLSILF 83 (85)
Q Consensus 61 ~~~li~~Lv~~vskgGNlLLNIG 83 (85)
..++++.+.+++..||-+++.+.
T Consensus 126 ~~~~l~~~~~~l~~~G~l~~~~~ 148 (195)
T 3cgg_A 126 REPALANIHRALGADGRAVIGFG 148 (195)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEEeC
Confidence 47899999999999999998754
No 24
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=23.01 E-value=38 Score=22.05 Aligned_cols=24 Identities=0% Similarity=0.055 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHhhcCCCcEEEec
Q psy111 59 LNMTEVLQTMMNTVSFGDKTLSIL 82 (85)
Q Consensus 59 ks~~~li~~Lv~~vskgGNlLLNI 82 (85)
....++++.+.+++..||-|++.+
T Consensus 122 ~~~~~~l~~~~~~LkpgG~l~~~~ 145 (253)
T 3g5l_A 122 ASFDDICKKVYINLKSSGSFIFSV 145 (253)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHcCCCcEEEEEe
Confidence 458999999999999999999864
No 25
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=22.10 E-value=41 Score=21.50 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHhhcCCCcEEEec
Q psy111 59 LNMTEVLQTMMNTVSFGDKTLSIL 82 (85)
Q Consensus 59 ks~~~li~~Lv~~vskgGNlLLNI 82 (85)
....++++.+.+++..||-+++.+
T Consensus 121 ~~~~~~l~~~~~~L~pgG~l~~~~ 144 (243)
T 3bkw_A 121 EDVARLFRTVHQALSPGGHFVFST 144 (243)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred chHHHHHHHHHHhcCcCcEEEEEe
Confidence 358899999999999999999864
No 26
>2dwf_A Pulmonary surfactant-associated protein B; mini-B, SP-B, surfactant protein B, lipid associated protein, surface active protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 2jou_A
Probab=21.59 E-value=50 Score=16.48 Aligned_cols=18 Identities=11% Similarity=0.359 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhcCCCcEE
Q psy111 62 TEVLQTMMNTVSFGDKTL 79 (85)
Q Consensus 62 ~~li~~Lv~~vskgGNlL 79 (85)
..+|+.+-.++-|+|.+|
T Consensus 5 rtlikriq~vIPk~~r~l 22 (34)
T 2dwf_A 5 RALIKRIQAMIPKGGRML 22 (34)
T ss_dssp HHHHHHHHHHCTTCCSCC
T ss_pred HHHHHHHHhhcCCcccch
Confidence 467888888999998875
No 27
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=21.59 E-value=67 Score=20.21 Aligned_cols=19 Identities=11% Similarity=0.064 Sum_probs=17.5
Q ss_pred HHHHHHHhhcCCCcEEEec
Q psy111 64 VLQTMMNTVSFGDKTLSIL 82 (85)
Q Consensus 64 li~~Lv~~vskgGNlLLNI 82 (85)
+++.+.+++..||-+++..
T Consensus 127 ~l~~~~~~LkpgG~l~i~~ 145 (220)
T 3hnr_A 127 AIAKYSQLLNKGGKIVFAD 145 (220)
T ss_dssp HHHHHHHHSCTTCEEEEEE
T ss_pred HHHHHHHhcCCCCEEEEEe
Confidence 9999999999999999863
No 28
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=21.48 E-value=78 Score=20.97 Aligned_cols=24 Identities=4% Similarity=-0.115 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHhhcCCCcEEEec
Q psy111 59 LNMTEVLQTMMNTVSFGDKTLSIL 82 (85)
Q Consensus 59 ks~~~li~~Lv~~vskgGNlLLNI 82 (85)
.....+++.+.+++..||.+++..
T Consensus 145 ~~~~~~l~~~~~~LkpgG~l~~~~ 168 (287)
T 1kpg_A 145 ERYDAFFSLAHRLLPADGVMLLHT 168 (287)
T ss_dssp TTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEE
Confidence 457899999999999999999853
No 29
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=21.20 E-value=40 Score=20.71 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHhhcCCCcEEE
Q psy111 60 NMTEVLQTMMNTVSFGDKTLS 80 (85)
Q Consensus 60 s~~~li~~Lv~~vskgGNlLL 80 (85)
...++++.+.+++..||.|++
T Consensus 79 ~~~~~l~~~~r~LkpgG~l~~ 99 (176)
T 2ld4_A 79 HSAEILAEIARILRPGGCLFL 99 (176)
T ss_dssp CCHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHCCCCEEEEE
Confidence 358999999999999999987
No 30
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=21.00 E-value=58 Score=19.64 Aligned_cols=22 Identities=9% Similarity=0.205 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhcCCCcEEEecc
Q psy111 62 TEVLQTMMNTVSFGDKTLSILF 83 (85)
Q Consensus 62 ~~li~~Lv~~vskgGNlLLNIG 83 (85)
.++++.+.+++.+||.+++...
T Consensus 107 ~~~l~~~~~~L~~gG~l~~~~~ 128 (178)
T 3hm2_A 107 PGVFAAAWKRLPVGGRLVANAV 128 (178)
T ss_dssp TTHHHHHHHTCCTTCEEEEEEC
T ss_pred HHHHHHHHHhcCCCCEEEEEee
Confidence 6789999999999999998653
No 31
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}
Probab=20.90 E-value=42 Score=20.87 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHhhcCCCcEEEec
Q psy111 60 NMTEVLQTMMNTVSFGDKTLSIL 82 (85)
Q Consensus 60 s~~~li~~Lv~~vskgGNlLLNI 82 (85)
...++++.+.+++..||.+++-.
T Consensus 137 ~~~~~l~~~~~~LkpgG~li~~~ 159 (215)
T 2pxx_A 137 TVDQVLSEVSRVLVPGGRFISMT 159 (215)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCcCCCEEEEEe
Confidence 45889999999999999998854
No 32
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=20.80 E-value=48 Score=20.68 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHhhcCCCcEEEec
Q psy111 60 NMTEVLQTMMNTVSFGDKTLSIL 82 (85)
Q Consensus 60 s~~~li~~Lv~~vskgGNlLLNI 82 (85)
....+++.+.+++..||.+++..
T Consensus 119 ~~~~~l~~~~~~L~pgG~l~i~~ 141 (203)
T 3h2b_A 119 ELPDALVALRMAVEDGGGLLMSF 141 (203)
T ss_dssp THHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCcEEEEEE
Confidence 58999999999999999999865
No 33
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41
Probab=20.70 E-value=42 Score=21.44 Aligned_cols=24 Identities=8% Similarity=0.036 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHhhcCCCcEEEec
Q psy111 59 LNMTEVLQTMMNTVSFGDKTLSIL 82 (85)
Q Consensus 59 ks~~~li~~Lv~~vskgGNlLLNI 82 (85)
..+.++++.+.+++.+||-+++..
T Consensus 116 ~~~~~~l~~~~~~L~pgG~l~i~~ 139 (219)
T 1vlm_A 116 DDPERALKEAYRILKKGGYLIVGI 139 (219)
T ss_dssp SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCHHHHHHHHHHHcCCCcEEEEEE
Confidence 457899999999999999999854
No 34
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=20.55 E-value=30 Score=22.01 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHH-HhhcCCCcEEEec
Q psy111 58 ILNMTEVLQTMM-NTVSFGDKTLSIL 82 (85)
Q Consensus 58 ~ks~~~li~~Lv-~~vskgGNlLLNI 82 (85)
...+.++++.+. +++..||-|++-+
T Consensus 116 ~~~~~~~l~~~~~~~LkpgG~l~i~~ 141 (250)
T 2p7i_A 116 IDDPVALLKRINDDWLAEGGRLFLVC 141 (250)
T ss_dssp CSSHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hcCHHHHHHHHHHHhcCCCCEEEEEc
Confidence 346789999999 9999999999865
No 35
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0
Probab=20.44 E-value=43 Score=22.19 Aligned_cols=11 Identities=9% Similarity=-0.103 Sum_probs=9.5
Q ss_pred CCcEEEeccCC
Q psy111 75 GDKTLSILFSV 85 (85)
Q Consensus 75 gGNlLLNIG~~ 85 (85)
.|.+++|.|||
T Consensus 181 ~g~~ivNpGSV 191 (246)
T 3rqz_A 181 SGRYIINPGAV 191 (246)
T ss_dssp SSCEEEEECCS
T ss_pred CCeEEEECCcc
Confidence 36999999997
No 36
>1dtc_A Acetyl-delta-toxin; NMR {Staphylococcus aureus} SCOP: j.7.1.1 PDB: 2dtb_A 2kam_A*
Probab=20.30 E-value=38 Score=15.88 Aligned_cols=15 Identities=13% Similarity=0.377 Sum_probs=10.3
Q ss_pred CHHHHHHHHHHhhcC
Q psy111 60 NMTEVLQTMMNTVSF 74 (85)
Q Consensus 60 s~~~li~~Lv~~vsk 74 (85)
+..++++.++++|.|
T Consensus 8 TIgdfvKlI~~TV~K 22 (26)
T 1dtc_A 8 TIGDLVKWIIDTVNK 22 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345777788887764
No 37
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=20.20 E-value=98 Score=19.32 Aligned_cols=23 Identities=4% Similarity=0.031 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHhhcCCCcEEEec
Q psy111 60 NMTEVLQTMMNTVSFGDKTLSIL 82 (85)
Q Consensus 60 s~~~li~~Lv~~vskgGNlLLNI 82 (85)
...++++.+.+++.+||.+++..
T Consensus 120 ~~~~~l~~~~~~LkpgG~l~~~~ 142 (204)
T 3e05_A 120 MLEEIIDAVDRRLKSEGVIVLNA 142 (204)
T ss_dssp CHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CHHHHHHHHHHhcCCCeEEEEEe
Confidence 58899999999999999999864
Done!