RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy111
         (85 letters)



>d1hl9a2 c.1.8.11 (A:7-356) Putative alpha-L-fucosidase, catalytic
           domain {Thermotoga maritima [TaxId: 2336]}
          Length = 350

 Score = 46.7 bits (110), Expect = 3e-08
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 6/75 (8%)

Query: 2   VVVNDRWCNTCLCKHGGYLTCEDKYN-PGKFQSRKFENCFTLDKYSWGYRRDANIDDILN 60
             VNDRW       H  + T E   N PG     K+E    +   S+GY R+   + +L+
Sbjct: 243 GSVNDRWG----VPHWDFKTAEYHVNYPGDLPGYKWEFTRGIGL-SFGYNRNEGPEHMLS 297

Query: 61  MTEVLQTMMNTVSFG 75
           + +++ T+++ VS G
Sbjct: 298 VEQLVYTLVDVVSKG 312


>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
          synthase {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 427

 Score = 24.4 bits (52), Expect = 2.5
 Identities = 4/28 (14%), Positives = 14/28 (50%)

Query: 54 NIDDILNMTEVLQTMMNTVSFGDKTLSI 81
            +D+L+  +V + +   +   D  +++
Sbjct: 44 RGEDVLSTMQVFRDLGVEIEDKDGVITV 71


>d2hg6a1 d.364.1.1 (A:1-106) Hypothetical protein PA1123
          {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 106

 Score = 23.0 bits (49), Expect = 4.5
 Identities = 6/19 (31%), Positives = 11/19 (57%)

Query: 52 DANIDDILNMTEVLQTMMN 70
          + NI++ LN+ E L   + 
Sbjct: 74 EQNINERLNIGEPLLVYLR 92


>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 126

 Score = 22.7 bits (47), Expect = 6.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 15 KHGGYLTCEDKYNPGKFQSRKF 36
          +  G+L  ED  N GKF  R F
Sbjct: 16 RICGFLDIEDNENSGKFLRRYF 37


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.449 

Gapped
Lambda     K      H
   0.267   0.0586    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 332,472
Number of extensions: 13300
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 7
Length of query: 85
Length of database: 2,407,596
Length adjustment: 50
Effective length of query: 35
Effective length of database: 1,721,096
Effective search space: 60238360
Effective search space used: 60238360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.2 bits)