BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1110
(366 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IDV|A Chain A, Crystal Structure Of The A0a Fragment Of Erp72
Length = 241
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 115/251 (45%), Gaps = 32/251 (12%)
Query: 80 PQATSEEVKKKEQDWADTESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYE 139
P + ++++ KE E+ V+ L D NFD + ++ +VL+ FYAPWCGHCK+ PEYE
Sbjct: 2 PLGSEDDLEVKE------ENGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYE 55
Query: 140 EAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGEPTTHPSGTPQTSDT--PRTQC 197
+ A +K + + + A++ +V++S + +G PT Q D RTQ
Sbjct: 56 KIANILKDKDPPIPVAKI----DATSASVLASRFDVSGYPTIKILKKGQAVDYEGSRTQ- 110
Query: 198 CHPAAHSPASPIRQTPHPEPHRPVRSXXXXXXGSYWRPESVGRGWELRQV-------GTG 250
+ +R+ P+ P ++ + V ++ V G
Sbjct: 111 -----EEIVAKVREVSQPDWTPPPEVTLVLTKENF---DEVVNDADIILVEFYAPWCGHC 162
Query: 251 KRIK---SINSGSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGH 307
K++ + S R LA VD T E L KRFD+ G+PTLK FR G +D
Sbjct: 163 KKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGR-PYDYNG 221
Query: 308 LRDASRLVEFM 318
R+ +V++M
Sbjct: 222 PREKYGIVDYM 232
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 9/85 (10%)
Query: 64 YENGNTKDKIIEFVRNPQATSEEVKKKEQDWADTESEVVHLTDDNFDLVIQEESSVLVMF 123
YE T+++I+ VR + + DW + LT +NFD V+ + +LV F
Sbjct: 104 YEGSRTQEEIVAKVR---------EVSQPDWTPPPEVTLVLTKENFDEVVNDADIILVEF 154
Query: 124 YAPWCGHCKKLKPEYEEAAATMKQQ 148
YAPWCGHCKKL PEYE+AA + ++
Sbjct: 155 YAPWCGHCKKLAPEYEKAAKELSKR 179
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDXXXXXXXXX 329
+A +D T L RFD+ G+PT+K + G A D R +V +R+
Sbjct: 70 VAKIDATSASVLASRFDVSGYPTIKILKKGQ-AVDYEGSRTQEEIVAKVREVSQPDWTPP 128
Query: 330 XXXXXXXXXXXVYHLGADNFASTLRKKKHALVMFYAP 366
L +NF + LV FYAP
Sbjct: 129 PEVTLV--------LTKENFDEVVNDADIILVEFYAP 157
>pdb|2DJ2|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 120
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 34/47 (72%)
Query: 102 VHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
+ LT DNFD V+ +LV FYAPWCGHCKKL PEYE+AA + ++
Sbjct: 10 LSLTKDNFDDVVNNADIILVEFYAPWCGHCKKLAPEYEKAAKELSKR 56
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFM 318
LA VD T + L KRFD+ G+PTLK FR G FD R+ +V++M
Sbjct: 62 LAKVDATEQTDLAKRFDVSGYPTLKIFRKGR-PFDYNGPREKYGIVDYM 109
>pdb|2DJ1|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 140
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Query: 98 ESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGML 157
E+ V L D NFD + ++ +VL+ FYAPWCGHCK+ PEYE+ A+T+K + +
Sbjct: 16 ENGVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKI 75
Query: 158 RHRPQASNVAVVSSLRNKNGEPT 180
A++ ++++S + +G PT
Sbjct: 76 ----DATSASMLASKFDVSGYPT 94
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRD 320
+A +D T L +FD+ G+PT+K + G A D R +V +R+
Sbjct: 72 VAKIDATSASMLASKFDVSGYPTIKILKKGQ-AVDYDGSRTQEEIVAKVRE 121
>pdb|2ALB|A Chain A, Nmr Structure Of The N-Terminal Domain A Of The
Glycoprotein Chaperone Erp57
Length = 113
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/51 (56%), Positives = 37/51 (72%), Gaps = 3/51 (5%)
Query: 99 SEVVHLTDDNFDLVIQEESS---VLVMFYAPWCGHCKKLKPEYEEAAATMK 146
S+V+ LTDDNF+ I + S +LV F+APWCGHCK+L PEYE AA +K
Sbjct: 1 SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHCKRLAPEYEAAATRLK 51
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMR 319
LA VD T + ++ + G+PTLK FR G A R A +V ++
Sbjct: 56 LAKVDCTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLK 105
>pdb|1X5D|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase A6
Length = 133
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Query: 97 TESEVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
+ +V+ LTDD+FD V+ E +V FYAPWCGHCK L+PE+ AA+ +K+Q
Sbjct: 5 SSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQ 57
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGS--VAFDAGHLRD--ASRLVEFMRD 320
LAAVD T + L R+ I+GFPT+K F+ G V +D G R SR ++ D
Sbjct: 64 LAAVDATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSD 118
>pdb|3F8U|A Chain A, TapasinERP57 HETERODIMER
pdb|3F8U|C Chain C, TapasinERP57 HETERODIMER
Length = 481
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 36/51 (70%), Gaps = 3/51 (5%)
Query: 99 SEVVHLTDDNFDLVIQEESS---VLVMFYAPWCGHCKKLKPEYEEAAATMK 146
S+V+ LTDDNF+ I + S +LV F+APWCGH K+L PEYE AA +K
Sbjct: 1 SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLK 51
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 107 DNFDLVIQEES-SVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
+NFD ++ E+ VL+ FYAPWCGHCK L+P+Y+E + +
Sbjct: 360 ENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKD 402
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 265 QITGI--LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVA 302
++ GI LA VD T + ++ + G+PTLK FR G A
Sbjct: 49 RLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIFRDGEEA 88
>pdb|2DML|A Chain A, The Solution Structure Of The First Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A6
Length = 130
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 36/51 (70%), Gaps = 1/51 (1%)
Query: 97 TESEVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
+ +V+ LT NF+ VIQ + LV FYAPWCGHC++L PE+++AA +K
Sbjct: 15 SSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALK 65
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRA 298
+ AV+ + +SLG ++ ++GFPT+K F A
Sbjct: 70 VGAVNADKHQSLGGQYGVQGFPTIKIFGA 98
>pdb|2B5E|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
pdb|3BOA|A Chain A, Crystal Structure Of Yeast Protein Disulfide Isomerase
Length = 504
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%)
Query: 98 ESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQR 149
+S VV L D+F+ IQ VL F+APWCGHCK + PEY +AA T+ ++
Sbjct: 13 DSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKN 64
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 87 VKKKEQDWADTESEVVHLTDDNFDLVIQE-ESSVLVMFYAPWCGHCKKLKPEYEEAAATM 145
+ K ++ + + +S V L N D ++ + + VLV++YAPWCGHCK+L P Y+E A T
Sbjct: 346 IVKSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTY 405
Query: 146 KQQRAYYGMGMLRH 159
+ + L H
Sbjct: 406 ANATSDVLIAKLDH 419
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSV--AFDAGHLRDASRLVEFM 318
LA +D T + L +I GFP+LK F+ V + D R A +V+FM
Sbjct: 67 LAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFM 117
>pdb|1MEK|A Chain A, Human Protein Disulfide Isomerase, Nmr, 40 Structures
Length = 120
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 32/56 (57%)
Query: 93 DWADTESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
D + E V+ L NF + +LV FYAPWCGHCK L PEY +AA +K +
Sbjct: 1 DAPEEEDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAE 56
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 6/54 (11%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVA----FDAGHLRDASRLVEFMR 319
LA VD T E L +++ ++G+PT+K+FR G A + AG R+A +V +++
Sbjct: 62 LAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAG--READDIVNWLK 113
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 100 EVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
+++HLTDD+FD V++ + ++LV F+A WCGHCK + P +E A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGHCKMIAPILDEIA 46
>pdb|2DMM|A Chain A, The Solution Structure Of The Second Thioredoxin Domain Of
Human Protein Disulfide-Isomerase A3
Length = 142
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 107 DNFDLVIQEES-SVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
+NFD ++ E+ VL+ FYAPWCGHCK L+P+Y+E + +
Sbjct: 35 ENFDEIVNNENKDVLIEFYAPWCGHCKNLEPKYKELGEKLSKD 77
>pdb|3UVT|A Chain A, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|B Chain B, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|C Chain C, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|D Chain D, Crystal Structure Of The Third Catalytic Domain Of Erp46
pdb|3UVT|E Chain E, Crystal Structure Of The Third Catalytic Domain Of Erp46
Length = 111
Score = 52.8 bits (125), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 99 SEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEE 140
S V+ LT++NFD I E + FYAPWCGHCK L P +EE
Sbjct: 5 STVLALTENNFDDTIAE-GITFIKFYAPWCGHCKTLAPTWEE 45
Score = 35.8 bits (81), Expect = 0.042, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFM 318
+A VD T E+++ ++ ++G+PTL FR G + RD L F+
Sbjct: 59 IAEVDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFV 107
>pdb|3UJ1|A Chain A, Crystal Structure Of The Third Thioredoxin Domain Of Human
Erp46
Length = 110
Score = 51.6 bits (122), Expect = 7e-07, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 101 VVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEE 140
V+ LT++NFD I E + FYAPWCGHCK L P +EE
Sbjct: 2 VLALTENNFDDTIAE-GITFIKFYAPWCGHCKTLAPTWEE 40
Score = 35.8 bits (81), Expect = 0.042, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFM 318
+A VD T E+++ ++ ++G+PTL FR G + RD L F+
Sbjct: 54 IAEVDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFV 102
>pdb|2DIZ|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Human Thioredoxin Domain-Containing Protein 5
Length = 117
Score = 51.6 bits (122), Expect = 7e-07, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 97 TESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEE 140
+ V+ LT++NFD I E + FYAPWCGHCK L P +EE
Sbjct: 5 SSGTVLALTENNFDDTIAE-GITFIKFYAPWCGHCKTLAPTWEE 47
Score = 35.4 bits (80), Expect = 0.045, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFM 318
+A VD T E+++ ++ ++G+PTL FR G + RD L F+
Sbjct: 61 IAEVDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFV 109
>pdb|2DJJ|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
pdb|2KP1|A Chain A, Solution Structure Of The A' Domain Of Thermophilic Fungal
Protein Disulfide Isomerase
Length = 121
Score = 51.2 bits (121), Expect = 8e-07, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 97 TESEVVHLTDDNF-DLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAA 143
+E V + N+ ++V+ + VL+ FYAPWCGHCK L P+YEE A
Sbjct: 5 SEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGA 52
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 69 TKDKIIEFVR-------NPQATSEEVKKKEQDWADTESEVVHLTDDNF-DLVIQEESSVL 120
T ++I EF P S+E+ +DW +V L NF D+ E+ +V
Sbjct: 217 TAERITEFCHRFLEGKIKPHLMSQELP---EDWDKQPVKV--LVGKNFEDVAFDEKKNVF 271
Query: 121 VMFYAPWCGHCKKLKPEYEEAAATMKQQR 149
V FYAPWCGHCK+L P +++ T K
Sbjct: 272 VEFYAPWCGHCKQLAPIWDKLGETYKDHE 300
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 100 EVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
+++HLTDD+FD V++ + ++LV F+A WCG CK + P EE A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIA 46
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Query: 101 VVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
++HLTDD+FD V++ + ++LV F+A WCG CK + P +E A
Sbjct: 14 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA 56
>pdb|3ED3|A Chain A, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
pdb|3ED3|B Chain B, Crystal Structure Of The Yeast DithiolDISULFIDE
Oxidoreductase Mpd1p
Length = 298
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 93 DWADTESEVVHLTDDNFDLVIQEES-SVLVMFYAPWCGHCKKLKPEYEEAAATM 145
++ D++ + LT +FD I + + LV FYAPWCGHCKKL + +AA +
Sbjct: 11 NFYDSDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRL 64
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 26/38 (68%), Gaps = 4/38 (10%)
Query: 264 RQITGIL--AAV--DVTREKSLGKRFDIKGFPTLKYFR 297
+++ G++ AAV D+ + K+L ++D+ GFPTL FR
Sbjct: 62 KRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVFR 99
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 100 EVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
+++HLTDD+FD V++ + ++LV F+A WCG CK + P +E A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA 46
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 100 EVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
+++HLTDD+FD V++ + ++LV F+A WCG CK + P +E A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA 46
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 100 EVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
+++HLTDD+FD V++ + ++LV F+A WCG CK + P +E A
Sbjct: 4 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA 47
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 100 EVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
+++HLTDD+FD V++ + ++LV F+A WCG CK + P +E A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA 46
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 100 EVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
+++HLTDD+FD V++ + ++LV F+A WCG CK + P +E A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA 46
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 100 EVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
+++HLTDD+FD V++ + ++LV F+A WCG CK + P +E A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA 46
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 100 EVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
+++HLTDD+FD V++ + ++LV F+A WCG CK + P +E A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA 46
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 100 EVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
+++HLTDD+FD V++ + ++LV F+A WCG CK + P +E A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA 46
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 100 EVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
+++HLTDD+FD V++ + ++LV F+A WCG CK + P +E A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA 46
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 100 EVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
+++HLTDD+FD V++ + ++LV F+A WCG CK + P +E A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA 46
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 100 EVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
+++HLTDD+FD V++ + ++LV F+A WCG CK + P +E A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA 46
>pdb|2DJ3|A Chain A, The Solution Structure Of The Third Thioredoxin Domain Of
Mouse Protein Disulfide-Isomerase A4
Length = 133
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 109 FDLVIQE-ESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQR 149
FD ++ + + VL+ FYAPWCGHCK+L+P Y K Q+
Sbjct: 17 FDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQK 58
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 269 ILAAVDVTREKSLGKRFDIKGFPTLKYFRAGS----VAFDAGHLRDASRLVEFM 318
++A +D T ++ ++GFPT+ + +G + F+ G+ RD L +F+
Sbjct: 61 VIAKMDATANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGN-RDLEHLSKFI 113
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 48.5 bits (114), Expect = 5e-06, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 100 EVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
+++HLTDD+FD +++ + ++LV F+A WCG CK + P +E A
Sbjct: 3 KIIHLTDDSFDTDLVKADGAILVDFWAEWCGPCKMIAPILDEIA 46
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 48.5 bits (114), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 104 LTDDNF-DLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
L NF D+ E+ +V V FYAPWCGHCK+L P +++ T K
Sbjct: 12 LVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDH 57
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 48.1 bits (113), Expect = 7e-06, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 100 EVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
+++H+TDD+FD V++ + ++LV F+A WCG CK + P +E A
Sbjct: 3 KIIHVTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA 46
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 48.1 bits (113), Expect = 8e-06, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 100 EVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
+++HLTDD+FD V++ + ++LV F+A WCG CK + P ++ A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDDIA 46
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 48.1 bits (113), Expect = 8e-06, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 100 EVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
+++HLTDD+FD V++ + ++LV F+A WCG C+ + P +E A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCEMIAPILDEIA 46
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 100 EVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
+++HLTD++FD V++ + ++LV F+A WCG CK + P +E A
Sbjct: 3 KIIHLTDESFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA 46
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 100 EVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
+++HLTDD+F+ V++ + ++LV F+A WCG CK + P +E A
Sbjct: 3 KIIHLTDDSFETDVLKADGAILVDFWAEWCGPCKMIAPILDEIA 46
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 100 EVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
+++HLT+D+FD V++ + ++LV F+A WCG CK + P +E A
Sbjct: 3 KIIHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIA 46
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 99 SEVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
+++HLTDD+FD V++ + ++LV F+A WCG K + P +E A
Sbjct: 22 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIA 66
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 101 VVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
V+ +TD+NF+ V++ + VLV F+APWCG C+ + P EE A
Sbjct: 3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELA 45
>pdb|3P2A|A Chain A, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|B Chain B, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|C Chain C, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
pdb|3P2A|D Chain D, Crystal Structure Of Thioredoxin 2 From Yersinia Pestis
Length = 148
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 98 ESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAA 143
+ EV++ T + D ++Q++ ++ F+APWCG C+ P + E AA
Sbjct: 37 DGEVINATAETLDKLLQDDLPXVIDFWAPWCGPCRSFAPIFAETAA 82
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 100 EVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
+++HLTDD+FD V++ + ++LV F+A WC CK + P +E A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCVWCKMIAPILDEIA 46
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 100 EVVHLTDDNFDL-VIQEESSVLVMFYAPWCGH-CKKLKPEYEEAA 142
+++HLTDD+FD V++ + ++LV F+A WCG CK + P +E A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGRPCKMIAPILDEIA 47
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 45.8 bits (107), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 100 EVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
+++HLTDD+FD V++ + ++LV F+A WCG CK + +E A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKLIASILDEIA 46
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 45.4 bits (106), Expect = 5e-05, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 100 EVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
+++HLTDD+FD V++ + ++LV F+A WCG K + P +E A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPSKMIAPILDEIA 46
>pdb|3VFI|A Chain A, Crystal Structure Of A Metagenomic Thioredoxin
Length = 104
Score = 45.1 bits (105), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 104 LTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
L+D +F L V Q +++MF WC CKK+KP +EE A+ M+
Sbjct: 4 LSDSDFQLEVRQHPDPIIIMFTGSWCQPCKKMKPTFEEMASQME 47
>pdb|1T00|A Chain A, The Structure Of Thioredoxin From S. Coelicolor
Length = 112
Score = 44.7 bits (104), Expect = 8e-05, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 103 HLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAAA 143
H+TDD+F+ V++ + VLV F+A WCG C+++ P E AA
Sbjct: 9 HVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAA 50
>pdb|1SYR|A Chain A, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|B Chain B, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|C Chain C, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|D Chain D, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|E Chain E, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|F Chain F, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|G Chain G, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|H Chain H, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|I Chain I, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|J Chain J, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|K Chain K, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
pdb|1SYR|L Chain L, Initial Structural Analysis Of Plasmodium Falciparum
Thioredoxin
Length = 112
Score = 44.7 bits (104), Expect = 8e-05, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 109 FDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAAT 144
FD +I + V+V F+A WCG CK++ P YEE + T
Sbjct: 19 FDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKT 54
>pdb|1RQM|A Chain A, Solution Structure Of The K18gR82E ALICYCLOBACILLUS
Acidocaldarius Thioredoxin Mutant
Length = 105
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 104 LTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
LTD NF IQ + VLV F+A WCG C+ + P EE A
Sbjct: 5 LTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFA 43
>pdb|1NSW|A Chain A, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|B Chain B, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|C Chain C, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
pdb|1NSW|D Chain D, The Crystal Structure Of The K18g Mutant Of The
Thioredoxin From Alicyclobacillus Acidocaldarius
Length = 105
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 104 LTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
LTD NF IQ + VLV F+A WCG C+ + P EE A
Sbjct: 5 LTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFA 43
>pdb|2PPT|A Chain A, Crystal Structure Of Thioredoxin-2
pdb|2PPT|B Chain B, Crystal Structure Of Thioredoxin-2
Length = 155
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 27/35 (77%)
Query: 114 QEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
+++ +LV F+APWCG C+++ P+++ AAAT+ Q
Sbjct: 62 RDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQ 96
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMR 319
LA +D ++ R I+G P F G A R AS LV F+R
Sbjct: 99 LAKIDTQAHPAVAGRHRIQGIPAFILFHKGRELARAAGARPASELVGFVR 148
>pdb|1NW2|A Chain A, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|B Chain B, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|C Chain C, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|D Chain D, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|E Chain E, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|F Chain F, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|G Chain G, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
pdb|1NW2|H Chain H, The Crystal Structure Of The Mutant R82e Of Thioredoxin
From Alicyclobacillus Acidocaldarius
Length = 105
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 104 LTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
LTD NF IQ + VLV F+A WCG C+ + P EE A
Sbjct: 5 LTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFA 43
>pdb|1QUW|A Chain A, Solution Structure Of The Thioredoxin From Bacillus
Acidocaldarius
Length = 105
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 24/39 (61%)
Query: 104 LTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
LTD NF IQ + VLV F+A WCG C+ + P EE A
Sbjct: 5 LTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFA 43
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 100 EVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
+++HLTDD+FD V++ + ++LV F+A WC K + P +E A
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCACAKMIAPILDEIA 46
>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
Length = 382
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 99 SEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
SE+ L +N D ++ LV FYA WC + L P +EEA+ +K++
Sbjct: 5 SEITSLDTENIDEILNNADVALVNFYADWCRFSQXLHPIFEEASDVIKEE 54
>pdb|1DBY|A Chain A, Nmr Structures Of Chloroplast Thioredoxin M Ch2 From The
Green Alga Chlamydomonas Reinhardtii
Length = 107
Score = 42.0 bits (97), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 104 LTDDNFDLVIQEES-SVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
+ DD F V+ E S VLV F+APWCG C+ + P +E A K +
Sbjct: 6 VNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK 51
>pdb|3APS|A Chain A, Crystal Structure Of Trx4 Domain Of Erdj5
pdb|3APS|B Chain B, Crystal Structure Of Trx4 Domain Of Erdj5
Length = 122
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 102 VHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
+ LT F+ V+Q ++ +V FYAPWCG C+ PE+E A +K
Sbjct: 6 IDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIK 51
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 41.6 bits (96), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 12/87 (13%)
Query: 100 EVVHLTDDNF-DLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLR 158
EV + D ++ + V++ E V+V F+APWCG CK + P +E A + A Y +
Sbjct: 1 EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKL---- 56
Query: 159 HRPQASNVAVVSSLRN-------KNGE 178
+ +A +A ++R+ KNGE
Sbjct: 57 NTDEAPGIATQYNIRSIPTVLFFKNGE 83
>pdb|1X5E|A Chain A, The Solution Structure Of The Thioredoxin-Like Domain Of
Human Thioredoxin-Related Transmembrane Protein
Length = 126
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 104 LTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQA 163
+TD+N+ ++ E ++ FYAPWC C+ L+PE+E A + + +P
Sbjct: 12 ITDENWRELL--EGDWMIEFYAPWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGL 69
Query: 164 SNVAVVSSL 172
S ++++L
Sbjct: 70 SGRFIINAL 78
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 110 DLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVV 169
+ V++ E V+V F+APWCG CK + P +E A + A Y + + +A +A
Sbjct: 11 EFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKL----NTDEAPGIATQ 66
Query: 170 SSLRN-------KNGE 178
++R+ KNGE
Sbjct: 67 YNIRSIPTVLFFKNGE 82
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 15/59 (25%)
Query: 99 SEVVHLTDDNFDL-VIQEESSVLVMFYAPWC--------------GHCKKLKPEYEEAA 142
+++HLTDD+FD V++ + ++LV F+A WC G CK + P +E A
Sbjct: 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIA 61
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 101 VVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAA 143
+V +TD +FD + E LV F+A WCG CK + P EE AA
Sbjct: 5 IVKVTDADFDSKV-ESGVQLVDFWATWCGSCKMIAPVLEELAA 46
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 101 VVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAA 143
+V +TD +FD + E LV F+A WCG CK + P EE AA
Sbjct: 6 IVKVTDADFDSKV-ESGVQLVDFWATWCGTCKMIAPVLEELAA 47
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 101 VVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAA 143
+V +TD +FD + E LV F+A WCG CK + P EE AA
Sbjct: 6 IVKVTDADFDSKV-ESGVQLVDFWATWCGPCKMIAPVLEELAA 47
>pdb|3TCO|A Chain A, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|B Chain B, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
pdb|3TCO|C Chain C, Crystallographic And Spectroscopic Characterization Of
Sulfolobus Solfataricus Trxa1 Provide Insights Into The
Determinants Of Thioredoxin Fold Stability
Length = 109
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 104 LTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAY 151
LT++NFD VI+ VLV +A WC C +P Y++ A K + +
Sbjct: 9 LTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGKAVF 56
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 102 VHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
+ +TD NFD + + VLV F+A WC C+ + P EE A
Sbjct: 5 IEVTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIA 45
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 102 VHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
+ +TD NFD + + VLV F+A WC C+ + P EE A
Sbjct: 4 IEVTDQNFDETLGQHPLVLVDFWAEWCAPCRXIAPILEEIA 44
>pdb|3H79|A Chain A, Crystal Structure Of Trypanosoma Cruzi Thioredoxin-like
Hypothetical Protein Q4dv70
Length = 127
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 99 SEVVHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQR 149
S VV LTD+ FD +V+ E V V++Y PW H +++ + + Q+R
Sbjct: 15 SRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKR 66
>pdb|1THX|A Chain A, Thioredoxin-2
Length = 115
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 101 VVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAAAT 144
V+ +TD F+ V++ E VLV F+A WCG C+ + P AA T
Sbjct: 9 VITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANT 53
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 23/47 (48%)
Query: 101 VVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQ 147
V HL NFD I + V+V F+A WC C L P EE A Q
Sbjct: 8 VKHLNSKNFDEFITKNKIVVVDFWAEWCAPCLILAPVIEELANDYPQ 54
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 105 TDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAY 151
T FD I ++ V+V FYA WCG CK + P E+ + Q Y
Sbjct: 7 TASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFY 53
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%)
Query: 105 TDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAY 151
T FD I ++ V+V FYA WCG CK + P E+ + Q Y
Sbjct: 13 TASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFY 59
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 101 VVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLR-- 158
V+HL NFD + +V F+A WC C L P EE A Q G G L
Sbjct: 1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ----VGFGKLNSD 56
Query: 159 HRPQASNVAVVSSLRN----KNGEP 179
P + V SL K+GEP
Sbjct: 57 ENPDIAARYGVMSLPTVIFFKDGEP 81
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin C
From M. Tb
Length = 116
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 98 ESEVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGM 156
+S + +TD +F V+ VLV F+A WCG CK + P EE A + +
Sbjct: 6 KSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDV 65
Query: 157 LRHRPQASNVAVVSS---LRNKNGEPTTHPSG 185
+ A N VVS + K+G+P G
Sbjct: 66 DTNPETARNFQVVSIPTLILFKDGQPVKRIVG 97
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 98 ESEVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGM 156
+S + +TD +F V+ VLV F+A WCG CK + P EE A + +
Sbjct: 11 KSATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDV 70
Query: 157 LRHRPQASNVAVVSS---LRNKNGEPTTHPSG 185
+ A N VVS + K+G+P G
Sbjct: 71 DTNPETARNFQVVSIPTLILFKDGQPVKRIVG 102
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 110 DLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAA 143
D V+ E+ V+V F+A WCG CK L P E+ A
Sbjct: 25 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVA 58
>pdb|2GZY|A Chain A, Solution Structures Of The Reduced Form Of Thioredoxin
From Bacillus Subtilis
pdb|2GZZ|A Chain A, Solution Structures Of The Oxidized Form Of Thioredoxin
From Bacillus Subtilis
Length = 104
Score = 38.1 bits (87), Expect = 0.009, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 101 VVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATM 145
+V TD +F E VL F+APWCG CK + P EE M
Sbjct: 3 IVKATDQSFS-AETSEGVVLADFWAPWCGPCKMIAPVLEELDQEM 46
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 37.4 bits (85), Expect = 0.012, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 100 EVVHLTDDNF-DLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLR 158
EV + D ++ + V++ E V+V F+APWCG K + P +E A + A Y +
Sbjct: 1 EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPSKLIAPVIDELAKEYSGKIAVYKL---- 56
Query: 159 HRPQASNVAVVSSLRN-------KNGE 178
+ +A +A ++R+ KNGE
Sbjct: 57 NTDEAPGIATQYNIRSIPTVLFFKNGE 83
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 96 DTESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
D + E++ L FD + V FY+P C HC L P + E A
Sbjct: 94 DDDPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFA 140
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 37.0 bits (84), Expect = 0.017, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATM 145
V++ FYA WCG CK + P+ EE + +M
Sbjct: 23 VVIDFYATWCGPCKMIAPKLEELSQSM 49
>pdb|2O89|A Chain A, S. Aureus Thioredoxin P31tC32S MUTANT
Length = 107
Score = 36.2 bits (82), Expect = 0.027, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 101 VVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAA 143
+V +TD +FD + E LV F+A WCG K + P EE AA
Sbjct: 6 IVKVTDADFDSKV-ESGVQLVDFWATWCGTSKMIAPVLEELAA 47
>pdb|3T58|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T58|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|A Chain A, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|B Chain B, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|C Chain C, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
pdb|3T59|D Chain D, C76aC455S MUTANT OF MOUSE QSOX1 CONTAINING AN INTERDOMAIN
DISULFIDE
Length = 519
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 112 VIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSS 171
V+ S+ V F+A WCGH P ++E A +K R + +L + +N AV
Sbjct: 26 VLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVL-DCAEETNSAVCRE 84
Query: 172 LRNKNGEPTT 181
N G PT
Sbjct: 85 F-NIAGFPTV 93
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 101 VVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
VV + F + LV F+APWCG C+ + P EE A
Sbjct: 35 VVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELA 76
>pdb|2I4A|A Chain A, Crystal Structure Of Thioredoxin From The Acidophile
Acetobacter Aceti
Length = 107
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 102 VHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEE 140
+ ++D +FD V++ VLV F+A WCG CK + P E
Sbjct: 5 LAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGE 44
>pdb|3Q6O|A Chain A, Oxidoreductase Fragment Of Human Qsox1
Length = 244
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 112 VIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSS 171
V+ S+ V F+A WCGHC P + A +K R + L + +N AV
Sbjct: 26 VLGSRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAAL-DCAEETNSAVCRD 84
Query: 172 LRNKNGEPTT 181
N G PT
Sbjct: 85 F-NIPGFPTV 93
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 34.7 bits (78), Expect = 0.076, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 105 TDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAY 151
T FD I ++ V+V FYA WCG K + P E+ + Q Y
Sbjct: 13 TASEFDSAIAQDKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQADFY 59
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 34.7 bits (78), Expect = 0.086, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 99 SEVVHLTDD-NFDLVIQEESSVLVM--FYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMG 155
SE++ L D + + ++++ + LV+ F+A WCG CK + P ++E + +
Sbjct: 13 SELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAIFVKVDVD 72
Query: 156 MLRHRPQASNVAVVSS-LRNKNGE 178
L + N++ + + + KNGE
Sbjct: 73 KLEETARKYNISAMPTFIAIKNGE 96
>pdb|3DIE|A Chain A, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
pdb|3DIE|B Chain B, Domain Swapping Of Staphylococcus Aureus Thioredoxin W28a
Mutant
Length = 106
Score = 34.7 bits (78), Expect = 0.088, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 101 VVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAA 143
+V +TD +FD + E LV F+A CG CK + P EE AA
Sbjct: 5 IVKVTDADFDSKV-ESGVQLVDFWATACGPCKMIAPVLEELAA 46
>pdb|2J23|A Chain A, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
pdb|2J23|B Chain B, Cross-Reactivity And Crystal Structure Of Malassezia
Sympodialis Thioredoxin (Mala S 13), A Member Of A New
Pan- Allergen Family
Length = 121
Score = 34.7 bits (78), Expect = 0.092, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 107 DNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAAT 144
D F V + V++ F+A WCG CK + P +E+ + T
Sbjct: 24 DQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDT 61
>pdb|3GNJ|A Chain A, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|B Chain B, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|C Chain C, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
pdb|3GNJ|D Chain D, The Crystal Structure Of A Thioredoxin-Related Protein
From Desulfitobacterium Hafniense Dcb
Length = 111
Score = 34.3 bits (77), Expect = 0.10, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 273 VDVTREKSLGKRFDIKGFPTLKYFRAG 299
VDV EK+L +RF +KG P + YF+ G
Sbjct: 60 VDVEEEKTLFQRFSLKGVPQILYFKDG 86
>pdb|3NOF|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3NOF|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant
pdb|3O6T|A Chain A, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|B Chain B, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|C Chain C, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
pdb|3O6T|D Chain D, Mycobacterium Tuberculosis Thioredoxin C C40s Mutant In
Complex With Quinol Inhibitor Pmx464
Length = 118
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 98 ESEVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGM 156
+S + +TD +F V+ VLV F+A WCG K + P EE A + +
Sbjct: 8 KSATIKVTDASFATDVLSSNKPVLVDFWATWCGPSKMVAPVLEEIATERATDLTVAKLDV 67
Query: 157 LRHRPQASNVAVVSS---LRNKNGEPTTHPSG 185
+ A N VVS + K+G+P G
Sbjct: 68 DTNPETARNFQVVSIPTLILFKDGQPVKRIVG 99
>pdb|2OE0|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE0|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae
pdb|2OE1|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE1|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Reduced Form)
pdb|2OE3|A Chain A, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
pdb|2OE3|B Chain B, Crystal Structure Of Mitochondrial Thioredoxin 3 From
Saccharomyces Cerevisiae (Oxidized Form)
Length = 114
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 99 SEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKP 136
+++ +LT+ F +I++ +++ FYA WCG CK ++P
Sbjct: 15 TKLTNLTE--FRNLIKQNDKLVIDFYATWCGPCKMMQP 50
>pdb|2IPA|A Chain A, Solution Structure Of Trx-Arsc Complex
Length = 104
Score = 33.9 bits (76), Expect = 0.15, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 101 VVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATM 145
+V TD +F E VL F+APWCG K + P EE M
Sbjct: 3 IVKATDQSFS-AETSEGVVLADFWAPWCGPSKMIAPVLEELDQEM 46
>pdb|2VOC|A Chain A, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
pdb|2VOC|B Chain B, Thioredoxin A Active Site Mutants Form Mixed Disulfide
Dimers That Resemble Enzyme-substrate Reaction
Intermediate
Length = 112
Score = 33.9 bits (76), Expect = 0.17, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 101 VVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATM 145
+V TD +F E VL F+APWCG K + P EE M
Sbjct: 3 IVKATDQSFS-AETSEGVVLADFWAPWCGPSKMIAPVLEELDQEM 46
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 33.1 bits (74), Expect = 0.28, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 99 SEVVHLTDD-NFDLVIQEESSVLVM--FYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMG 155
S+++ L D + + ++++ + LV+ F+A WCG CK + P ++E + +
Sbjct: 4 SKLIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYDAIFVKVDVD 63
Query: 156 MLRHRPQASNVAVVSS-LRNKNGE 178
L + N++ + + + KNGE
Sbjct: 64 KLEETARKYNISAMPTFIAIKNGE 87
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 102 VHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
+ LT F+ V+Q ++ +V FYAPW G + PE+E A +K
Sbjct: 660 IDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFELLARMIK 705
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 25/88 (28%)
Query: 64 YENGNTKDKIIEFV---RNPQATSEEVKKKEQDWADTESEVVHLTDDNFDLVIQE---ES 117
YE ++ ++I+EF+ RNP VV LT F+ ++++ +
Sbjct: 524 YEGHHSAEQILEFIEDLRNPS-------------------VVSLTPSTFNELVKQRKHDE 564
Query: 118 SVLVMFYAPWCGHCKKLKPEYEEAAATM 145
+V FY+PW + L PE++ A T+
Sbjct: 565 VWMVDFYSPWSHPSQVLMPEWKRMARTL 592
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 19/100 (19%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDXXXXXXXXX 329
+ +D T + L ++I+ +PT F S+ GH A +++EF+ D
Sbjct: 490 VGTLDCTIHEGLCNMYNIQAYPTTVVFNQSSIHEYEGH-HSAEQILEFIED--------- 539
Query: 330 XXXXXXXXXXXVYHLGADNFASTLRKKKHA---LVMFYAP 366
V L F ++++KH +V FY+P
Sbjct: 540 ------LRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSP 573
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 96 DTESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
D + E++ L FD + V FY+P H L P + E A
Sbjct: 113 DDDPEIITLERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFA 159
>pdb|2L5L|A Chain A, Solution Structure Of Thioredoxin From Bacteroides
Vulgatus
Length = 136
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 4/75 (5%)
Query: 120 LVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSS----LRNK 175
+V FYA WCG CK + P +E A Q Y + + + A + S
Sbjct: 42 IVDFYADWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPSILFIPM 101
Query: 176 NGEPTTHPSGTPQTS 190
G+P P+ S
Sbjct: 102 EGKPEMAQGAMPKAS 116
>pdb|3HZ4|A Chain A, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
pdb|3HZ4|B Chain B, Crystal Structure Of Thioredoxin From Methanosarcina Mazei
Length = 140
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 99 SEVVHLTDDNFDLVIQE-ESSVLVMFYAPWCGHCKKLKPEYEEAA 142
S ++ D + +++ + V+V FY+P C +CK +P +EE A
Sbjct: 6 SSIIEFEDXTWSQQVEDSKKPVVVXFYSPACPYCKAXEPYFEEYA 50
>pdb|2K8V|A Chain A, Solution Structure Of Oxidised Erp18
Length = 157
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEA 141
++V+ + WCG CK LKP++ E+
Sbjct: 42 LMVIIHKSWCGACKALKPKFAES 64
>pdb|1SEN|A Chain A, Endoplasmic Reticulum Protein Rp19 O95881
Length = 164
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEA 141
++V+ + WCG CK LKP++ E+
Sbjct: 49 LMVIIHKSWCGACKALKPKFAES 71
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 32.0 bits (71), Expect = 0.53, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 114 QEESSVLVMFYAPWCGHCKKLKPEYE 139
+E ++V F A WCG CK + P +E
Sbjct: 22 EEHKPIVVAFTATWCGPCKMIAPLFE 47
>pdb|2A8B|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Phosphatase Receptor, Type R
Length = 283
Score = 32.0 bits (71), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 90 KEQDWADTESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQR 149
KE+ + T+ +++ DD + +V QE+S V+VM KLK + E+ ++R
Sbjct: 86 KEKAFIATQGPMINTVDDFWQMVWQEDSPVIVMI--------TKLKEKNEKCVLYWPEKR 137
Query: 150 AYYG-MGMLRHRPQASNVAVVSSLRNKNGEPTTH 182
YG + +L + + +L K G T H
Sbjct: 138 GIYGKVEVLVISVNECDNYTIRNLVLKQGSHTQH 171
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 31.6 bits (70), Expect = 0.74, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 100 EVVHLTDDNFDLVIQE--ESSVLVMFYAPWCGHCKKLKPEYEEAA 142
+V + D F +++ + V++ + WCG CK + P+YE+ A
Sbjct: 7 KVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLA 51
>pdb|3HYP|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
pdb|3HYP|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp_s105g
Mutant
Length = 141
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 10/60 (16%)
Query: 83 TSEEVKKKEQDWADTESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
T E KK D+ + E +L D +V FYA WCG CK + P EE +
Sbjct: 28 TRAEFLKKIADYENHSKEWKYLGD----------KPAIVDFYADWCGPCKMVAPILEELS 77
>pdb|3HXS|A Chain A, Crystal Structure Of Bacteroides Fragilis Trxp
pdb|3HXS|B Chain B, Crystal Structure Of Bacteroides Fragilis Trxp
Length = 141
Score = 31.6 bits (70), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 120 LVMFYAPWCGHCKKLKPEYEEAA 142
+V FYA WCG CK + P EE +
Sbjct: 55 IVDFYADWCGPCKMVAPILEELS 77
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 31.6 bits (70), Expect = 0.81, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 260 SFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFM 318
S S + I VDV + + ++ I+G PTL F+ G VA +L EF+
Sbjct: 44 SLSEKYSNVIFLEVDVDDAQDVAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFL 102
Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 119 VLVMFYAPWCGHCKKLKP 136
V+V F A WCG CK +KP
Sbjct: 23 VVVDFSATWCGPCKMIKP 40
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 31.2 bits (69), Expect = 0.96, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 114 QEESSVLVMFYAPWCGHCKKLKPEYE 139
+E ++V F A WCG CK + P +E
Sbjct: 22 EEHKPIVVDFTATWCGPCKMIAPLFE 47
>pdb|3D21|A Chain A, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
pdb|3D21|B Chain B, Crystal Structure Of A Poplar Wild-Type Thioredoxin H,
Pttrxh4
Length = 139
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 12/68 (17%)
Query: 87 VKKKEQDWADTESEV------VHL--TDDNFDLVIQEESS----VLVMFYAPWCGHCKKL 134
+ K+ D D E + VHL T + +D + E S VL F A WCG CK++
Sbjct: 5 LAKRNHDADDDEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQI 64
Query: 135 KPEYEEAA 142
P Y E +
Sbjct: 65 APYYIELS 72
>pdb|2FA4|A Chain A, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
pdb|2FA4|B Chain B, Crystal Structure Of Oxidized Form From Saccharomyces
Cerevisiae
Length = 111
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAA 142
V+V F+A WCG CK + P E+ A
Sbjct: 29 VVVDFFATWCGPCKMIAPMIEKFA 52
>pdb|2HSY|A Chain A, Solution Structure Of Thioredoxin 2 From Saccharomyces
Cerevisiae
Length = 104
Score = 30.8 bits (68), Expect = 1.3, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAA 142
V+V F+A WCG CK + P E+ A
Sbjct: 22 VVVDFFATWCGPCKMIAPMIEKFA 45
>pdb|1JLN|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase Ptp-SlBR7
Length = 297
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 90 KEQDWADTESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQR 149
KE+ + T+ +++ +D + +V QE+S V+VM KLK + E+ ++R
Sbjct: 99 KEKAFIATQGPMINTVNDFWQMVWQEDSPVIVMI--------TKLKEKNEKCVLYWPEKR 150
Query: 150 AYYG 153
YG
Sbjct: 151 GIYG 154
>pdb|2A7N|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase
pdb|2A7P|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase In Complex With Its
Substrate 3-Indolelactate
pdb|2A85|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera
Of (S)- Mandelate Dehydrogenase In Complex With Its
Substrate 2- Hydroxyoctanoate
pdb|3GIY|A Chain A, Crystal Structures Of The G81a Mutant Of The Active
Chimera Of (S)-Mandelate Dehydrogenase And Its Complex
With Two Of Its Substrates
Length = 380
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 245 RQVGTGKRIKSINSGSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYF 296
R++ G +K++++G + T + AV+ RE+ L RF I F TLK F
Sbjct: 135 REIAQGMVLKALHTGYTTLVLTTDV--AVNGYRERDLHNRFKIPPFLTLKNF 184
>pdb|2VIM|A Chain A, X-Ray Structure Of Fasciola Hepatica Thioredoxin
Length = 104
Score = 30.0 bits (66), Expect = 2.3, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQ 147
++V F+A WCG C+ + P+ E A + +
Sbjct: 22 IVVDFFAQWCGPCRNIAPKVEALAKEIPE 50
>pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The
Membrane-Associated (S)- Mandelate Dehydrogenase From
Pseudomonas Putida At 2.15a Resolution
pdb|1P4C|A Chain A, High Resolution Structure Of Oxidized Active Mutant Of
(S)- Mandelate Dehydrogenase
pdb|1P5B|A Chain A, High Resolution Structure Of Reduced Active Mutant Of
(S)-Mandelate Dehydrogenase
Length = 380
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 245 RQVGTGKRIKSINSGSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYF 296
R++ G +K++++G + T + AV+ RE+ L RF I F TLK F
Sbjct: 135 REIAQGMVLKALHTGYTTLVLTTDV--AVNGYRERDLHNRFKIPPFLTLKNF 184
>pdb|1FAA|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Long Form)
Length = 124
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAA 142
V++ + WCG CK + P+YE+ A
Sbjct: 40 VVLDMFTQWCGPCKAMAPKYEKLA 63
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 119 VLVMFYAPWCGHCKKLKP 136
V+V F A WCG CK +KP
Sbjct: 23 VVVDFSATWCGPCKMIKP 40
>pdb|3QCP|A Chain A, Qsox From Trypanosoma Brucei
Length = 470
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 98 ESEVVHLTDDNFDLV--IQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
+S VV L+ D+F V + +V+FY CG C++ + + A +K +
Sbjct: 22 DSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVE 74
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 119 VLVMFYAPWCGHCKKLKP 136
V+V F A WCG CK +KP
Sbjct: 23 VVVDFSATWCGPCKMIKP 40
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 29.6 bits (65), Expect = 2.9, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 119 VLVMFYAPWCGHCKKLKP 136
V+V F A WCG CK +KP
Sbjct: 23 VVVDFSATWCGPCKMIKP 40
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 29.6 bits (65), Expect = 3.0, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 119 VLVMFYAPWCGHCKKLKP 136
V+V F A WCG CK +KP
Sbjct: 23 VVVDFSATWCGPCKMIKP 40
>pdb|1XWA|A Chain A, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|B Chain B, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|C Chain C, Drospohila Thioredoxin, Oxidized, P41212
pdb|1XWA|D Chain D, Drospohila Thioredoxin, Oxidized, P41212
Length = 111
Score = 29.6 bits (65), Expect = 3.0, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEE 140
V++ F+A WCG CK + P+ E
Sbjct: 28 VVLDFFATWCGPCKMISPKLVE 49
>pdb|1XW9|A Chain A, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|B Chain B, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|C Chain C, Drospohila Thioredoxin, Oxidized, P21
pdb|1XW9|D Chain D, Drospohila Thioredoxin, Oxidized, P21
pdb|1XWB|A Chain A, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|B Chain B, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|C Chain C, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWB|D Chain D, Drospohila Thioredoxin, Oxidized, P42212
pdb|1XWC|A Chain A, Drosophila Thioredoxin, Reduced, P6522
Length = 106
Score = 29.6 bits (65), Expect = 3.0, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEE 140
V++ F+A WCG CK + P+ E
Sbjct: 23 VVLDFFATWCGPCKMISPKLVE 44
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 29.6 bits (65), Expect = 3.1, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 119 VLVMFYAPWCGHCKKLKP 136
V+V F A WCG CK +KP
Sbjct: 23 VVVDFSATWCGPCKMIKP 40
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 29.3 bits (64), Expect = 3.5, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 119 VLVMFYAPWCGHCKKLKP 136
V+V F A WCG CK +KP
Sbjct: 23 VVVDFSATWCGPCKMIKP 40
>pdb|1PRX|A Chain A, Horf6 A Novel Human Peroxidase Enzyme
pdb|1PRX|B Chain B, Horf6 A Novel Human Peroxidase Enzyme
Length = 224
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 26 AITLGLIE--RLTEKADPVCTREKAKKKVRRQKNAEVKYVYENGNTKDKIIEFVRNPQAT 83
AI LG+++ EK PV R ++ + Y G D+I+ V + Q T
Sbjct: 111 AILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTGRNFDEILRVVISLQLT 170
Query: 84 SEEVKKKEQDWADTESEVV 102
+E+ DW D +S +V
Sbjct: 171 AEKRVATPVDWKDGDSVMV 189
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 29.3 bits (64), Expect = 3.7, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 119 VLVMFYAPWCGHCKKLKP 136
V+V F A WCG CK +KP
Sbjct: 23 VVVDFSATWCGPCKMIKP 40
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution Structures
Of The Oxidized And Reduced States Of Human Thioredoxin
Length = 105
Score = 29.3 bits (64), Expect = 3.9, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 119 VLVMFYAPWCGHCKKLKP 136
V+V F A WCG CK +KP
Sbjct: 23 VVVDFSATWCGPCKMIKP 40
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 29.3 bits (64), Expect = 4.0, Method: Composition-based stats.
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 119 VLVMFYAPWCGHCKKL 134
VLV F+A WCG C++L
Sbjct: 26 VLVDFFATWCGPCQRL 41
>pdb|2VM1|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM1|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Ammonium Sulfate As Precipitant
pdb|2VM2|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|C Chain C, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
pdb|2VM2|D Chain D, Crystal Structure Of Barley Thioredoxin H Isoform 1
Crystallized Using Peg As Precipitant
Length = 118
Score = 28.9 bits (63), Expect = 4.7, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAA 142
V++ F A WCG C+ + P + E A
Sbjct: 31 VIIDFTASWCGPCRVIAPVFAEYA 54
>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
pdb|3CXG|B Chain B, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
Length = 133
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Query: 115 EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGML 157
+ SS+++ F A WC C K+K EY K Q YY + ++
Sbjct: 39 QNSSIVIKFGAVWCKPCNKIK-EY------FKNQLNYYYVTLV 74
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,168,165
Number of Sequences: 62578
Number of extensions: 404429
Number of successful extensions: 1412
Number of sequences better than 100.0: 143
Number of HSP's better than 100.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1161
Number of HSP's gapped (non-prelim): 241
length of query: 366
length of database: 14,973,337
effective HSP length: 100
effective length of query: 266
effective length of database: 8,715,537
effective search space: 2318332842
effective search space used: 2318332842
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)