Query psy1110
Match_columns 366
No_of_seqs 234 out of 2240
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 17:58:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1110.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1110hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190|consensus 99.9 1.5E-25 3.3E-30 225.7 11.4 311 7-323 58-474 (493)
2 KOG0191|consensus 99.9 9E-23 1.9E-27 203.8 14.3 222 16-366 71-297 (383)
3 PTZ00102 disulphide isomerase; 99.9 1.1E-21 2.3E-26 200.2 17.3 189 14-324 269-467 (477)
4 KOG0190|consensus 99.9 6.2E-22 1.3E-26 199.6 11.8 137 98-365 24-161 (493)
5 cd03006 PDI_a_EFP1_N PDIa fami 99.9 2.7E-21 5.7E-26 161.4 10.6 104 96-318 6-113 (113)
6 TIGR01130 ER_PDI_fam protein d 99.8 3.7E-20 8E-25 187.2 16.3 191 14-325 257-457 (462)
7 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 1.4E-20 3.1E-25 152.7 9.6 100 100-318 2-101 (101)
8 cd02996 PDI_a_ERp44 PDIa famil 99.8 5.5E-20 1.2E-24 151.2 10.1 107 99-318 1-108 (108)
9 PF00085 Thioredoxin: Thioredo 99.8 6.6E-20 1.4E-24 147.6 9.0 102 101-321 1-103 (103)
10 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 1.1E-19 2.4E-24 148.0 9.4 100 100-318 2-104 (104)
11 cd03065 PDI_b_Calsequestrin_N 99.8 5.2E-19 1.1E-23 149.0 9.3 106 98-321 8-118 (120)
12 cd02994 PDI_a_TMX PDIa family, 99.8 8.8E-19 1.9E-23 141.9 10.3 100 100-320 2-101 (101)
13 KOG0910|consensus 99.8 6.7E-19 1.5E-23 151.5 8.1 105 99-322 43-148 (150)
14 cd03005 PDI_a_ERp46 PDIa famil 99.8 1.7E-18 3.7E-23 139.8 9.9 101 101-318 2-102 (102)
15 TIGR01130 ER_PDI_fam protein d 99.8 3E-18 6.6E-23 173.3 13.3 134 100-364 2-137 (462)
16 cd03002 PDI_a_MPD1_like PDI fa 99.8 2.2E-18 4.7E-23 141.1 9.7 100 101-319 2-109 (109)
17 PTZ00443 Thioredoxin domain-co 99.7 3.4E-18 7.5E-23 158.6 9.5 109 98-325 29-142 (224)
18 cd02997 PDI_a_PDIR PDIa family 99.7 8.4E-18 1.8E-22 136.0 10.3 101 101-318 2-104 (104)
19 PHA02278 thioredoxin-like prot 99.7 4.9E-18 1.1E-22 139.4 8.6 93 106-317 4-100 (103)
20 TIGR02187 GlrX_arch Glutaredox 99.7 1.1E-17 2.5E-22 154.4 11.9 176 8-320 34-214 (215)
21 cd02956 ybbN ybbN protein fami 99.7 1.1E-17 2.3E-22 134.2 9.2 52 268-319 45-96 (96)
22 cd03007 PDI_a_ERp29_N PDIa fam 99.7 5.9E-18 1.3E-22 141.4 7.7 54 268-321 52-115 (116)
23 cd02963 TRX_DnaJ TRX domain, D 99.7 1.4E-17 3.1E-22 138.1 9.8 101 103-321 8-111 (111)
24 PTZ00102 disulphide isomerase; 99.7 2.4E-17 5.3E-22 168.2 13.6 111 98-325 31-141 (477)
25 cd03001 PDI_a_P5 PDIa family, 99.7 1.9E-17 4.2E-22 133.8 10.0 99 101-318 2-102 (103)
26 PRK09381 trxA thioredoxin; Pro 99.7 3.1E-17 6.6E-22 134.8 10.7 105 99-322 3-108 (109)
27 PRK10996 thioredoxin 2; Provis 99.7 2.4E-17 5.3E-22 142.3 10.2 105 98-321 34-138 (139)
28 TIGR01126 pdi_dom protein disu 99.7 3E-17 6.6E-22 131.9 9.4 102 104-322 1-102 (102)
29 cd02999 PDI_a_ERp44_like PDIa 99.7 2.4E-17 5.3E-22 134.4 8.6 49 269-318 51-100 (100)
30 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 4.3E-17 9.4E-22 131.6 10.0 100 101-318 2-104 (104)
31 KOG4277|consensus 99.7 1.7E-17 3.7E-22 155.9 8.5 83 266-364 77-161 (468)
32 cd02993 PDI_a_APS_reductase PD 99.7 4.5E-17 9.8E-22 134.4 9.8 101 100-318 2-109 (109)
33 cd02954 DIM1 Dim1 family; Dim1 99.7 1.8E-17 4E-22 138.0 7.2 89 106-313 2-92 (114)
34 cd02985 TRX_CDSP32 TRX family, 99.7 3.9E-17 8.4E-22 133.6 8.9 95 105-320 2-101 (103)
35 cd02948 TRX_NDPK TRX domain, T 99.7 5.7E-17 1.2E-21 132.3 9.6 97 104-320 5-101 (102)
36 KOG0191|consensus 99.7 8.1E-17 1.8E-21 160.9 11.5 141 100-366 30-172 (383)
37 COG3118 Thioredoxin domain-con 99.7 5.1E-17 1.1E-21 153.6 8.5 107 99-324 23-132 (304)
38 cd02998 PDI_a_ERp38 PDIa famil 99.7 1.3E-16 2.8E-21 128.9 9.8 101 101-318 2-105 (105)
39 cd03000 PDI_a_TMX3 PDIa family 99.7 2.2E-16 4.7E-21 129.0 9.6 97 107-321 7-103 (104)
40 cd02965 HyaE HyaE family; HyaE 99.7 2.3E-16 5E-21 130.7 8.7 97 100-315 11-109 (111)
41 cd02961 PDI_a_family Protein D 99.7 3.7E-16 7.9E-21 124.1 8.2 99 103-318 2-101 (101)
42 TIGR01068 thioredoxin thioredo 99.6 9.9E-16 2.2E-20 122.5 9.5 99 104-321 1-100 (101)
43 cd02953 DsbDgamma DsbD gamma f 99.6 1.1E-15 2.3E-20 124.7 8.2 94 107-319 2-104 (104)
44 cd02950 TxlA TRX-like protein 99.6 1.6E-15 3.4E-20 131.5 9.5 102 107-325 11-113 (142)
45 cd02962 TMX2 TMX2 family; comp 99.6 1.6E-15 3.4E-20 132.9 9.3 52 96-147 25-78 (152)
46 cd02984 TRX_PICOT TRX domain, 99.6 2E-15 4.3E-20 120.9 8.9 94 105-318 1-96 (97)
47 cd02957 Phd_like Phosducin (Ph 99.6 1.1E-15 2.4E-20 127.0 7.3 90 99-309 4-96 (113)
48 cd02989 Phd_like_TxnDC9 Phosdu 99.6 2.4E-15 5.3E-20 125.3 8.5 90 99-308 4-94 (113)
49 PLN00410 U5 snRNP protein, DIM 99.6 3.9E-15 8.5E-20 128.6 9.3 97 105-320 10-118 (142)
50 TIGR00424 APS_reduc 5'-adenyly 99.6 5.3E-15 1.2E-19 150.1 10.4 106 98-321 350-462 (463)
51 cd02992 PDI_a_QSOX PDIa family 99.6 1.1E-14 2.5E-19 121.4 10.2 49 100-148 2-51 (114)
52 KOG0912|consensus 99.6 2.5E-15 5.5E-20 141.6 6.8 108 104-325 1-109 (375)
53 PLN02309 5'-adenylylsulfate re 99.6 6.7E-15 1.5E-19 149.2 10.0 105 99-321 345-456 (457)
54 KOG0907|consensus 99.6 8.9E-15 1.9E-19 120.6 8.7 52 269-321 54-105 (106)
55 cd02949 TRX_NTR TRX domain, no 99.6 1.6E-14 3.4E-19 116.5 8.8 52 268-319 46-97 (97)
56 PTZ00051 thioredoxin; Provisio 99.5 2.3E-14 5.1E-19 115.0 8.4 89 105-314 7-95 (98)
57 cd02947 TRX_family TRX family; 99.5 8E-14 1.7E-18 108.3 9.1 52 268-319 42-93 (93)
58 cd02986 DLP Dim1 family, Dim1- 99.5 5.8E-14 1.3E-18 116.5 8.1 43 106-148 2-46 (114)
59 KOG0912|consensus 99.5 8.4E-14 1.8E-18 131.4 9.5 116 12-148 36-155 (375)
60 cd02987 Phd_like_Phd Phosducin 99.5 1.4E-13 3.1E-18 123.3 9.9 49 98-146 61-113 (175)
61 TIGR01295 PedC_BrcD bacterioci 99.5 1.6E-13 3.5E-18 115.9 9.6 59 100-160 7-65 (122)
62 cd02951 SoxW SoxW family; SoxW 99.4 5.1E-13 1.1E-17 112.5 8.7 110 107-322 4-119 (125)
63 cd02975 PfPDO_like_N Pyrococcu 99.4 4.8E-13 1E-17 111.4 7.8 54 268-321 54-109 (113)
64 KOG0908|consensus 99.4 7.3E-13 1.6E-17 122.1 8.4 101 105-326 8-110 (288)
65 TIGR02187 GlrX_arch Glutaredox 99.4 1.2E-12 2.6E-17 120.9 8.8 86 268-366 56-143 (215)
66 cd02988 Phd_like_VIAF Phosduci 99.4 3.3E-12 7.3E-17 116.2 9.6 49 98-146 81-132 (192)
67 PF13848 Thioredoxin_6: Thiore 99.3 2.3E-11 5.1E-16 108.0 13.7 164 15-320 13-184 (184)
68 cd02982 PDI_b'_family Protein 99.3 3.4E-12 7.4E-17 103.2 7.5 54 268-321 45-102 (103)
69 PTZ00062 glutaredoxin; Provisi 99.3 6.2E-12 1.4E-16 115.2 9.3 92 105-325 5-97 (204)
70 cd02952 TRP14_like Human TRX-r 99.3 8.1E-12 1.8E-16 105.1 7.4 54 105-158 8-70 (119)
71 TIGR00411 redox_disulf_1 small 99.3 1.2E-11 2.7E-16 95.7 7.7 50 268-321 32-81 (82)
72 PF13905 Thioredoxin_8: Thiore 99.3 5.2E-12 1.1E-16 100.8 5.1 50 116-165 1-52 (95)
73 cd03010 TlpA_like_DsbE TlpA-li 99.3 1.1E-11 2.3E-16 104.4 7.0 45 115-161 24-68 (127)
74 cd03008 TryX_like_RdCVF Trypar 99.2 1.4E-11 3.1E-16 107.2 5.9 48 115-162 24-79 (146)
75 cd02959 ERp19 Endoplasmic reti 99.2 1.1E-11 2.4E-16 104.0 4.7 40 109-148 12-51 (117)
76 KOG1731|consensus 99.2 1.1E-11 2.3E-16 125.9 4.4 55 94-148 34-89 (606)
77 TIGR00385 dsbE periplasmic pro 99.2 3.5E-11 7.5E-16 107.4 6.9 48 275-322 123-171 (173)
78 PRK14018 trifunctional thiored 99.2 5.3E-11 1.2E-15 122.6 7.7 114 114-320 54-171 (521)
79 PRK03147 thiol-disulfide oxido 99.1 1.9E-10 4.1E-15 101.6 9.3 110 115-321 60-171 (173)
80 PRK15412 thiol:disulfide inter 99.1 1.1E-10 2.4E-15 105.3 7.5 44 115-161 67-110 (185)
81 PRK00293 dipZ thiol:disulfide 99.1 3E-10 6.6E-15 119.2 8.3 54 269-322 510-570 (571)
82 KOG4277|consensus 99.1 2.8E-09 6.1E-14 100.9 13.8 92 16-126 67-163 (468)
83 PF13098 Thioredoxin_2: Thiore 99.1 1.8E-10 4E-15 94.5 5.2 41 278-318 71-112 (112)
84 cd02967 mauD Methylamine utili 99.0 3.4E-10 7.5E-15 93.1 6.0 40 115-154 20-59 (114)
85 cd02964 TryX_like_family Trypa 99.0 3.2E-10 6.9E-15 96.5 6.0 46 115-160 16-64 (132)
86 TIGR02738 TrbB type-F conjugat 99.0 8.1E-10 1.8E-14 97.0 8.6 42 115-158 49-90 (153)
87 cd02955 SSP411 TRX domain, SSP 99.0 7.2E-10 1.6E-14 94.0 7.7 53 106-158 5-60 (124)
88 PHA02125 thioredoxin-like prot 99.0 6.5E-10 1.4E-14 85.7 6.3 44 270-316 27-71 (75)
89 TIGR00412 redox_disulf_2 small 99.0 6.4E-10 1.4E-14 86.0 6.0 29 120-148 2-30 (76)
90 cd03011 TlpA_like_ScsD_MtbDsbE 99.0 1.6E-09 3.5E-14 90.2 8.7 42 276-317 80-121 (123)
91 cd03009 TryX_like_TryX_NRX Try 99.0 1.1E-09 2.5E-14 92.6 7.5 46 115-160 17-65 (131)
92 PLN02919 haloacid dehalogenase 99.0 1.8E-09 3.8E-14 120.6 9.5 43 115-157 419-462 (1057)
93 TIGR02740 TraF-like TraF-like 99.0 1.5E-09 3.2E-14 103.9 7.6 41 116-158 166-206 (271)
94 PF08534 Redoxin: Redoxin; In 98.9 3.2E-09 6.9E-14 91.3 8.2 47 115-161 27-75 (146)
95 PRK13728 conjugal transfer pro 98.9 5.3E-09 1.2E-13 94.0 9.4 38 120-159 73-110 (181)
96 PRK11509 hydrogenase-1 operon 98.9 5.3E-09 1.1E-13 89.3 8.8 58 268-325 70-127 (132)
97 cd03012 TlpA_like_DipZ_like Tl 98.9 1.8E-09 4E-14 90.9 5.3 43 115-157 22-65 (126)
98 PTZ00056 glutathione peroxidas 98.9 5.3E-09 1.2E-13 95.7 8.1 44 115-158 38-82 (199)
99 PLN02412 probable glutathione 98.9 4.4E-09 9.5E-14 93.5 7.0 44 115-158 28-72 (167)
100 cd02966 TlpA_like_family TlpA- 98.9 7.7E-09 1.7E-13 83.1 7.4 45 115-159 18-63 (116)
101 cd00340 GSH_Peroxidase Glutath 98.8 5.8E-09 1.3E-13 91.0 6.8 43 115-158 21-64 (152)
102 PLN02399 phospholipid hydroper 98.8 5.5E-09 1.2E-13 97.9 6.8 44 115-158 98-142 (236)
103 cd02973 TRX_GRX_like Thioredox 98.7 1.8E-08 4E-13 75.2 5.9 33 268-302 31-63 (67)
104 TIGR02540 gpx7 putative glutat 98.7 2.8E-08 6E-13 86.7 7.5 43 115-157 21-64 (153)
105 TIGR02661 MauD methylamine deh 98.7 7.5E-08 1.6E-12 87.2 9.2 39 115-155 73-111 (189)
106 cd02958 UAS UAS family; UAS is 98.7 9E-08 2E-12 79.4 8.3 53 269-321 54-110 (114)
107 PTZ00256 glutathione peroxidas 98.6 8.4E-08 1.8E-12 86.5 7.8 44 115-158 39-84 (183)
108 TIGR01626 ytfJ_HI0045 conserve 98.6 8.7E-08 1.9E-12 86.5 7.6 40 277-316 133-174 (184)
109 cd03007 PDI_a_ERp29_N PDIa fam 98.6 4.1E-08 8.9E-13 82.2 4.7 75 5-80 30-115 (116)
110 KOG0913|consensus 98.6 2.7E-08 6E-13 91.4 2.4 104 99-323 24-127 (248)
111 cd03026 AhpF_NTD_C TRX-GRX-lik 98.6 2.1E-07 4.6E-12 74.3 7.1 44 268-315 44-87 (89)
112 cd03065 PDI_b_Calsequestrin_N 98.5 1.5E-07 3.3E-12 79.4 5.7 63 15-80 54-118 (120)
113 cd02960 AGR Anterior Gradient 98.5 3.9E-07 8.5E-12 77.7 8.1 35 114-148 21-58 (130)
114 cd03017 PRX_BCP Peroxiredoxin 98.5 3.9E-07 8.4E-12 77.4 7.7 46 115-160 22-69 (140)
115 cd03006 PDI_a_EFP1_N PDIa fami 98.5 2E-07 4.4E-12 77.7 5.6 59 15-77 52-113 (113)
116 COG0526 TrxA Thiol-disulfide i 98.5 3.9E-07 8.4E-12 72.2 7.1 33 116-148 32-64 (127)
117 smart00594 UAS UAS domain. 98.5 7.6E-07 1.6E-11 75.0 8.8 42 277-318 74-121 (122)
118 PRK00522 tpx lipid hydroperoxi 98.5 6.3E-07 1.4E-11 79.6 8.6 44 115-159 43-87 (167)
119 cd02969 PRX_like1 Peroxiredoxi 98.4 1E-06 2.2E-11 78.1 8.8 44 115-158 24-68 (171)
120 KOG2501|consensus 98.4 2.5E-07 5.4E-12 80.8 4.7 47 115-161 32-81 (157)
121 cd03015 PRX_Typ2cys Peroxiredo 98.4 9E-07 2E-11 78.8 8.3 45 115-159 28-74 (173)
122 PF13899 Thioredoxin_7: Thiore 98.4 3.9E-07 8.5E-12 71.1 5.2 38 111-148 12-52 (82)
123 TIGR03143 AhpF_homolog putativ 98.4 1.2E-06 2.6E-11 91.9 10.4 167 12-318 382-554 (555)
124 PF00578 AhpC-TSA: AhpC/TSA fa 98.4 3E-07 6.5E-12 76.3 4.6 46 115-160 24-71 (124)
125 cd03003 PDI_a_ERdj5_N PDIa fam 98.4 3.8E-07 8.2E-12 73.6 4.9 59 15-77 41-101 (101)
126 PRK09437 bcp thioredoxin-depen 98.4 1.4E-06 3.1E-11 75.7 8.4 45 115-159 29-75 (154)
127 COG4232 Thiol:disulfide interc 98.4 5.2E-07 1.1E-11 93.0 6.3 54 268-321 509-567 (569)
128 KOG0914|consensus 98.4 6.6E-07 1.4E-11 81.6 6.1 54 95-148 120-176 (265)
129 PF00085 Thioredoxin: Thioredo 98.4 8E-07 1.7E-11 70.9 5.8 61 15-79 40-102 (103)
130 TIGR03137 AhpC peroxiredoxin. 98.3 2.8E-06 6E-11 76.9 8.5 46 115-160 30-77 (187)
131 cd02996 PDI_a_ERp44 PDIa famil 98.3 1.1E-06 2.4E-11 71.8 5.2 60 16-77 42-108 (108)
132 cd03018 PRX_AhpE_like Peroxire 98.2 3.7E-06 7.9E-11 72.3 8.0 42 117-158 29-72 (149)
133 cd03014 PRX_Atyp2cys Peroxired 98.2 3.3E-06 7.1E-11 72.3 7.1 44 115-159 25-69 (143)
134 cd03004 PDI_a_ERdj5_C PDIa fam 98.2 1.8E-06 3.9E-11 69.8 4.9 59 15-77 42-104 (104)
135 PF01216 Calsequestrin: Calseq 98.2 7E-05 1.5E-09 72.9 16.4 114 16-151 80-197 (383)
136 cd02970 PRX_like2 Peroxiredoxi 98.2 3E-06 6.4E-11 72.5 6.2 46 116-161 24-70 (149)
137 cd02968 SCO SCO (an acronym fo 98.1 2.1E-06 4.5E-11 73.1 4.0 45 115-159 21-70 (142)
138 PF01216 Calsequestrin: Calseq 98.1 2E-05 4.4E-10 76.6 10.8 81 268-364 91-173 (383)
139 cd02971 PRX_family Peroxiredox 98.1 1.2E-05 2.7E-10 68.0 7.6 44 115-158 21-66 (140)
140 cd03005 PDI_a_ERp46 PDIa famil 98.1 7.9E-06 1.7E-10 65.4 5.8 62 14-77 38-102 (102)
141 cd03002 PDI_a_MPD1_like PDI fa 98.1 6.7E-06 1.5E-10 66.8 5.3 63 14-78 40-109 (109)
142 TIGR01126 pdi_dom protein disu 98.0 8.6E-06 1.9E-10 64.9 5.8 64 15-80 36-101 (102)
143 PRK10606 btuE putative glutath 98.0 1E-05 2.2E-10 73.2 6.7 43 115-158 24-67 (183)
144 cd02997 PDI_a_PDIR PDIa family 98.0 1.1E-05 2.5E-10 64.6 6.3 63 15-77 40-104 (104)
145 PTZ00062 glutaredoxin; Provisi 98.0 2.4E-05 5.3E-10 71.8 9.1 99 16-141 37-141 (204)
146 cd01659 TRX_superfamily Thiore 98.0 1.5E-05 3.3E-10 55.9 5.9 22 120-141 1-22 (69)
147 PRK10382 alkyl hydroperoxide r 98.0 2.7E-05 5.9E-10 70.6 8.9 46 115-160 30-77 (187)
148 TIGR02196 GlrX_YruB Glutaredox 98.0 1.3E-05 2.8E-10 59.7 5.7 34 280-319 41-74 (74)
149 cd02994 PDI_a_TMX PDIa family, 98.0 1.5E-05 3.2E-10 64.1 6.0 60 16-79 40-101 (101)
150 cd03001 PDI_a_P5 PDIa family, 98.0 1.2E-05 2.6E-10 64.5 5.4 59 15-77 41-102 (103)
151 PRK11509 hydrogenase-1 operon 97.9 2.1E-05 4.5E-10 67.3 6.0 65 16-83 60-126 (132)
152 PF02114 Phosducin: Phosducin; 97.9 6.3E-05 1.4E-09 71.9 9.9 49 99-147 125-177 (265)
153 PRK13190 putative peroxiredoxi 97.9 4.3E-05 9.3E-10 70.1 8.3 45 115-159 26-72 (202)
154 cd02963 TRX_DnaJ TRX domain, D 97.9 2.5E-05 5.5E-10 64.4 6.0 62 15-79 47-110 (111)
155 PF13848 Thioredoxin_6: Thiore 97.9 6.1E-05 1.3E-09 66.6 8.4 78 268-364 23-103 (184)
156 cd02998 PDI_a_ERp38 PDIa famil 97.9 2.9E-05 6.4E-10 62.1 5.7 63 14-77 40-105 (105)
157 cd02956 ybbN ybbN protein fami 97.9 3.4E-05 7.3E-10 61.3 5.9 59 16-78 36-96 (96)
158 cd02995 PDI_a_PDI_a'_C PDIa fa 97.8 3.8E-05 8.3E-10 61.4 5.4 61 14-77 40-104 (104)
159 cd02993 PDI_a_APS_reductase PD 97.8 3.9E-05 8.4E-10 63.0 5.4 61 15-77 44-109 (109)
160 cd02961 PDI_a_family Protein D 97.7 4E-05 8.6E-10 60.1 4.7 61 15-77 38-101 (101)
161 PRK15000 peroxidase; Provision 97.7 9E-05 1.9E-09 67.9 7.6 45 115-159 33-79 (200)
162 PRK13599 putative peroxiredoxi 97.7 0.00011 2.3E-09 68.2 8.0 45 116-160 28-74 (215)
163 COG2143 Thioredoxin-related pr 97.7 0.00023 4.9E-09 62.1 9.1 44 278-321 104-151 (182)
164 cd02999 PDI_a_ERp44_like PDIa 97.7 5.1E-05 1.1E-09 61.6 4.9 57 16-77 42-100 (100)
165 TIGR02200 GlrX_actino Glutared 97.7 3.1E-05 6.8E-10 58.6 3.3 22 120-141 2-23 (77)
166 TIGR01068 thioredoxin thioredo 97.7 0.0001 2.2E-09 58.3 6.1 62 15-80 37-100 (101)
167 PTZ00443 Thioredoxin domain-co 97.7 7.1E-05 1.5E-09 69.8 5.8 64 15-82 75-140 (224)
168 KOG0910|consensus 97.6 9.7E-05 2.1E-09 64.2 5.6 63 15-81 84-148 (150)
169 PF13728 TraF: F plasmid trans 97.6 0.00015 3.3E-09 67.2 7.2 40 116-157 120-159 (215)
170 cd03016 PRX_1cys Peroxiredoxin 97.6 0.00015 3.2E-09 66.5 7.0 43 118-160 28-71 (203)
171 PRK09381 trxA thioredoxin; Pro 97.6 0.00019 4E-09 58.5 6.6 61 16-80 45-107 (109)
172 cd03000 PDI_a_TMX3 PDIa family 97.6 0.00017 3.6E-09 58.5 6.2 63 15-80 38-103 (104)
173 PF13192 Thioredoxin_3: Thiore 97.6 0.00025 5.4E-09 54.6 6.8 44 271-319 32-76 (76)
174 KOG0911|consensus 97.5 1.7E-05 3.7E-10 72.9 -0.2 178 112-302 13-205 (227)
175 PF03190 Thioredox_DsbH: Prote 97.5 0.00033 7.2E-09 62.0 6.9 44 105-148 26-72 (163)
176 cd02949 TRX_NTR TRX domain, no 97.5 0.0003 6.5E-09 56.3 6.0 60 15-78 36-97 (97)
177 PRK15317 alkyl hydroperoxide r 97.5 0.00058 1.3E-08 71.1 9.8 52 268-323 148-199 (517)
178 PRK13189 peroxiredoxin; Provis 97.4 0.00028 6E-09 65.7 6.4 45 116-160 35-81 (222)
179 TIGR02180 GRX_euk Glutaredoxin 97.4 0.00015 3.2E-09 55.9 3.9 23 120-142 1-23 (84)
180 PRK10996 thioredoxin 2; Provis 97.4 0.00032 7E-09 60.4 6.2 61 15-79 75-137 (139)
181 PF06110 DUF953: Eukaryotic pr 97.4 0.00043 9.3E-09 58.3 6.7 41 115-155 18-65 (119)
182 cd02965 HyaE HyaE family; HyaE 97.4 0.00035 7.5E-09 58.1 5.7 66 7-74 40-109 (111)
183 PF07449 HyaE: Hydrogenase-1 e 97.4 0.00059 1.3E-08 56.3 6.9 46 268-313 61-106 (107)
184 cd02981 PDI_b_family Protein D 97.3 0.00097 2.1E-08 53.0 7.8 39 107-148 8-46 (97)
185 PRK13191 putative peroxiredoxi 97.3 0.00071 1.5E-08 62.7 7.9 45 116-160 33-79 (215)
186 cd03020 DsbA_DsbC_DsbG DsbA fa 97.3 8.4E-05 1.8E-09 67.5 1.7 42 273-318 156-197 (197)
187 cd02947 TRX_family TRX family; 97.3 0.0004 8.7E-09 53.1 5.2 67 10-78 24-93 (93)
188 PRK10877 protein disulfide iso 97.3 0.00016 3.4E-09 67.9 3.3 44 274-321 187-230 (232)
189 PF07912 ERp29_N: ERp29, N-ter 97.3 0.0015 3.2E-08 54.9 8.5 47 277-323 69-120 (126)
190 KOG1731|consensus 97.3 0.0011 2.3E-08 68.5 9.3 65 16-80 81-152 (606)
191 PTZ00137 2-Cys peroxiredoxin; 97.3 0.0009 1.9E-08 63.8 8.2 45 115-159 97-143 (261)
192 KOG1672|consensus 97.3 0.00072 1.6E-08 61.0 6.7 50 98-147 65-115 (211)
193 TIGR02739 TraF type-F conjugat 97.2 0.0012 2.5E-08 62.8 7.8 40 116-157 150-189 (256)
194 cd02991 UAS_ETEA UAS family, E 97.2 0.0014 3E-08 54.9 7.4 53 269-321 54-112 (116)
195 PRK13703 conjugal pilus assemb 97.2 0.0013 2.7E-08 62.3 7.8 33 116-148 143-175 (248)
196 KOG3425|consensus 97.2 0.0015 3.3E-08 54.5 7.2 52 107-158 13-75 (128)
197 TIGR03140 AhpF alkyl hydropero 97.1 0.0024 5.3E-08 66.5 9.8 51 268-322 149-199 (515)
198 PTZ00253 tryparedoxin peroxida 97.1 0.003 6.5E-08 57.6 9.3 46 115-160 35-82 (199)
199 KOG2603|consensus 97.1 0.0021 4.5E-08 61.9 8.2 117 98-325 39-169 (331)
200 TIGR00424 APS_reduc 5'-adenyly 97.0 0.00096 2.1E-08 68.5 6.0 64 14-79 393-461 (463)
201 PRK11200 grxA glutaredoxin 1; 97.0 0.0012 2.6E-08 51.7 5.3 26 120-145 3-28 (85)
202 cd03067 PDI_b_PDIR_N PDIb fami 97.0 0.0022 4.7E-08 52.1 6.6 54 268-321 51-111 (112)
203 cd03067 PDI_b_PDIR_N PDIb fami 96.9 0.00077 1.7E-08 54.6 3.2 65 14-80 40-111 (112)
204 PLN02309 5'-adenylylsulfate re 96.9 0.0015 3.2E-08 67.1 6.1 63 14-79 387-455 (457)
205 PF14595 Thioredoxin_9: Thiore 96.9 0.0035 7.5E-08 53.5 7.0 30 116-145 41-70 (129)
206 cd02982 PDI_b'_family Protein 96.8 0.0016 3.5E-08 52.1 4.6 62 15-80 35-102 (103)
207 COG3118 Thioredoxin domain-con 96.8 0.0016 3.5E-08 62.5 5.1 65 15-83 66-132 (304)
208 cd03072 PDI_b'_ERp44 PDIb' fam 96.8 0.0039 8.5E-08 51.7 6.4 55 268-322 50-108 (111)
209 cd02992 PDI_a_QSOX PDIa family 96.8 0.0024 5.1E-08 53.0 5.1 61 15-75 42-110 (114)
210 cd02953 DsbDgamma DsbD gamma f 96.7 0.0021 4.6E-08 51.8 4.5 62 15-78 37-104 (104)
211 cd02954 DIM1 Dim1 family; Dim1 96.7 0.0019 4.2E-08 53.9 4.2 51 16-70 38-90 (114)
212 cd02984 TRX_PICOT TRX domain, 96.7 0.0049 1.1E-07 48.6 6.1 57 16-77 38-96 (97)
213 cd02985 TRX_CDSP32 TRX family, 96.6 0.0048 1E-07 50.0 5.9 59 16-78 39-100 (103)
214 KOG0907|consensus 96.6 0.0052 1.1E-07 50.7 6.0 58 16-79 45-104 (106)
215 PHA02278 thioredoxin-like prot 96.6 0.0051 1.1E-07 50.4 5.8 52 25-76 45-100 (103)
216 PF00837 T4_deiodinase: Iodoth 96.4 0.025 5.4E-07 53.0 9.8 65 97-161 80-147 (237)
217 cd02957 Phd_like Phosducin (Ph 96.3 0.0094 2E-07 49.1 5.9 39 25-66 54-94 (113)
218 cd02976 NrdH NrdH-redoxin (Nrd 96.3 0.0089 1.9E-07 44.0 5.2 21 120-140 2-22 (73)
219 cd02948 TRX_NDPK TRX domain, T 96.3 0.012 2.5E-07 47.6 6.2 60 15-79 40-101 (102)
220 cd03073 PDI_b'_ERp72_ERp57 PDI 96.2 0.016 3.5E-07 48.1 6.7 54 268-321 52-110 (111)
221 KOG3414|consensus 96.1 0.028 6.1E-07 47.5 7.6 42 107-148 12-55 (142)
222 cd02989 Phd_like_TxnDC9 Phosdu 96.0 0.017 3.7E-07 47.8 6.1 40 25-66 52-93 (113)
223 cd02962 TMX2 TMX2 family; comp 96.0 0.014 3E-07 51.3 5.7 48 16-66 71-126 (152)
224 PF02966 DIM1: Mitosis protein 95.9 0.056 1.2E-06 46.1 8.7 43 106-148 8-52 (133)
225 cd03419 GRX_GRXh_1_2_like Glut 95.8 0.013 2.7E-07 44.9 4.0 24 120-143 2-25 (82)
226 cd02950 TxlA TRX-like protein 95.8 0.02 4.3E-07 49.4 5.7 66 16-83 44-112 (142)
227 TIGR00411 redox_disulf_1 small 95.6 0.029 6.2E-07 42.7 5.5 64 10-79 13-80 (82)
228 TIGR02183 GRXA Glutaredoxin, G 95.6 0.023 5E-07 44.6 5.0 25 120-144 2-26 (86)
229 cd02975 PfPDO_like_N Pyrococcu 95.5 0.021 4.5E-07 47.3 4.6 71 8-80 34-109 (113)
230 PF00462 Glutaredoxin: Glutare 95.5 0.024 5.2E-07 41.0 4.5 20 120-139 1-20 (60)
231 cd02983 P5_C P5 family, C-term 95.4 0.1 2.2E-06 44.5 8.5 56 268-323 58-116 (130)
232 cd02987 Phd_like_Phd Phosducin 95.4 0.043 9.3E-07 49.2 6.4 58 16-79 107-173 (175)
233 TIGR02190 GlrX-dom Glutaredoxi 95.3 0.041 8.9E-07 42.4 5.3 25 116-140 6-30 (79)
234 cd02983 P5_C P5 family, C-term 95.3 0.03 6.6E-07 47.7 4.9 68 14-85 46-119 (130)
235 PLN00410 U5 snRNP protein, DIM 95.1 0.056 1.2E-06 46.9 6.0 64 16-83 47-122 (142)
236 PTZ00051 thioredoxin; Provisio 95.1 0.045 9.7E-07 43.2 5.1 41 25-67 48-90 (98)
237 cd03066 PDI_b_Calsequestrin_mi 94.7 0.21 4.5E-06 40.4 8.3 44 102-148 3-48 (102)
238 cd02967 mauD Methylamine utili 94.3 0.0065 1.4E-07 49.4 -1.6 20 240-259 26-45 (114)
239 PRK11657 dsbG disulfide isomer 94.3 0.15 3.3E-06 48.3 7.4 42 277-319 207-249 (251)
240 TIGR03143 AhpF_homolog putativ 94.1 0.27 5.8E-06 51.9 9.7 55 268-322 398-454 (555)
241 cd03023 DsbA_Com1_like DsbA fa 94.1 0.085 1.8E-06 44.7 4.9 39 116-155 5-43 (154)
242 PHA03050 glutaredoxin; Provisi 94.1 0.077 1.7E-06 43.8 4.3 31 109-141 6-36 (108)
243 COG1225 Bcp Peroxiredoxin [Pos 93.9 0.26 5.7E-06 43.4 7.6 65 90-161 11-77 (157)
244 cd02981 PDI_b_family Protein D 93.8 0.088 1.9E-06 41.5 4.1 59 14-79 36-96 (97)
245 PF11009 DUF2847: Protein of u 93.7 0.093 2E-06 43.2 4.1 80 105-184 6-95 (105)
246 cd03027 GRX_DEP Glutaredoxin ( 93.6 0.066 1.4E-06 40.4 2.9 21 120-140 3-23 (73)
247 TIGR01295 PedC_BrcD bacterioci 93.4 0.16 3.4E-06 42.7 5.2 71 8-78 35-121 (122)
248 cd03069 PDI_b_ERp57 PDIb famil 93.4 0.42 9E-06 38.8 7.5 41 105-148 7-47 (104)
249 cd02986 DLP Dim1 family, Dim1- 93.3 0.12 2.5E-06 43.2 4.2 45 16-64 38-85 (114)
250 cd03418 GRX_GRXb_1_3_like Glut 92.8 0.22 4.7E-06 37.3 4.7 21 120-140 2-22 (75)
251 TIGR02181 GRX_bact Glutaredoxi 92.8 0.15 3.2E-06 38.9 3.8 21 121-141 2-22 (79)
252 cd03029 GRX_hybridPRX5 Glutare 92.7 0.41 8.9E-06 35.8 6.1 21 120-140 3-23 (72)
253 cd03019 DsbA_DsbA DsbA family, 92.4 0.17 3.7E-06 44.3 4.2 43 115-157 14-56 (178)
254 TIGR02194 GlrX_NrdH Glutaredox 92.3 0.24 5.2E-06 37.2 4.4 20 121-140 2-21 (72)
255 cd03072 PDI_b'_ERp44 PDIb' fam 92.3 0.19 4.1E-06 41.6 4.0 66 14-83 36-110 (111)
256 cd02951 SoxW SoxW family; SoxW 92.1 0.36 7.8E-06 40.1 5.6 65 16-82 41-120 (125)
257 KOG3171|consensus 91.6 0.7 1.5E-05 42.7 7.2 48 100-147 139-190 (273)
258 TIGR02189 GlrX-like_plant Glut 91.6 0.31 6.7E-06 39.4 4.5 29 111-141 3-31 (99)
259 TIGR00365 monothiol glutaredox 91.3 0.49 1.1E-05 38.1 5.4 34 108-141 4-40 (97)
260 cd02988 Phd_like_VIAF Phosduci 91.1 0.49 1.1E-05 43.1 5.8 55 16-78 126-189 (192)
261 KOG2501|consensus 91.0 0.044 9.4E-07 48.2 -1.1 69 234-302 32-129 (157)
262 cd02066 GRX_family Glutaredoxi 90.9 0.23 5E-06 36.0 2.9 36 120-161 2-37 (72)
263 PF13462 Thioredoxin_4: Thiore 90.4 0.52 1.1E-05 40.4 5.1 43 116-158 12-56 (162)
264 PRK10329 glutaredoxin-like pro 90.2 0.83 1.8E-05 35.5 5.6 21 120-140 3-23 (81)
265 cd03026 AhpF_NTD_C TRX-GRX-lik 89.8 0.43 9.4E-06 37.8 3.8 62 7-74 23-87 (89)
266 cd02972 DsbA_family DsbA famil 89.7 0.4 8.6E-06 36.7 3.5 38 120-157 1-38 (98)
267 PF07912 ERp29_N: ERp29, N-ter 89.6 1.2 2.5E-05 37.7 6.3 69 14-82 41-120 (126)
268 PF05768 DUF836: Glutaredoxin- 89.4 0.73 1.6E-05 35.7 4.7 49 268-319 29-81 (81)
269 PRK10954 periplasmic protein d 89.4 0.38 8.2E-06 44.0 3.6 42 116-157 37-81 (207)
270 KOG0913|consensus 89.2 0.44 9.6E-06 44.5 3.9 60 25-87 71-132 (248)
271 cd03073 PDI_b'_ERp72_ERp57 PDI 89.2 0.6 1.3E-05 38.6 4.3 63 15-80 41-110 (111)
272 KOG0908|consensus 87.7 0.89 1.9E-05 43.0 4.8 66 15-83 40-108 (288)
273 cd03028 GRX_PICOT_like Glutare 87.4 0.73 1.6E-05 36.3 3.6 32 110-141 2-36 (90)
274 COG0695 GrxC Glutaredoxin and 87.0 1.8 3.9E-05 33.5 5.5 20 120-139 3-22 (80)
275 KOG2640|consensus 86.5 0.46 9.9E-06 46.1 2.3 45 278-323 119-163 (319)
276 cd02066 GRX_family Glutaredoxi 86.4 0.26 5.7E-06 35.7 0.5 54 242-303 5-62 (72)
277 COG1331 Highly conserved prote 86.1 1.7 3.7E-05 46.5 6.4 63 104-166 31-96 (667)
278 cd03066 PDI_b_Calsequestrin_mi 85.0 1.5 3.2E-05 35.3 4.3 59 15-80 39-100 (102)
279 PF02114 Phosducin: Phosducin; 84.5 3.1 6.6E-05 39.9 6.9 61 16-82 170-239 (265)
280 PRK10638 glutaredoxin 3; Provi 84.1 1.8 4E-05 33.3 4.4 22 120-141 4-25 (83)
281 cd03013 PRX5_like Peroxiredoxi 83.7 2.1 4.6E-05 37.3 5.1 46 116-161 29-78 (155)
282 COG1651 DsbG Protein-disulfide 82.9 0.6 1.3E-05 43.4 1.3 41 276-321 202-242 (244)
283 PRK00293 dipZ thiol:disulfide 82.7 1.8 3.9E-05 46.0 4.9 61 16-79 501-568 (571)
284 PRK10824 glutaredoxin-4; Provi 80.6 2.7 5.8E-05 35.2 4.3 35 107-141 6-43 (115)
285 cd02973 TRX_GRX_like Thioredox 80.4 1.4 2.9E-05 32.2 2.2 46 7-54 10-58 (67)
286 TIGR00412 redox_disulf_2 small 80.2 4.1 9E-05 30.9 5.0 59 8-77 10-75 (76)
287 KOG3170|consensus 80.2 6.9 0.00015 36.0 7.0 50 99-148 91-143 (240)
288 KOG1752|consensus 79.2 4.3 9.4E-05 33.3 5.0 30 109-140 7-36 (104)
289 PHA02125 thioredoxin-like prot 79.1 4.2 9.1E-05 30.7 4.7 44 27-75 25-71 (75)
290 KOG1672|consensus 78.1 3 6.6E-05 38.0 4.1 39 26-66 115-155 (211)
291 cd03069 PDI_b_ERp57 PDIb famil 77.6 3.5 7.6E-05 33.3 4.1 59 15-80 38-103 (104)
292 COG1999 Uncharacterized protei 77.6 6.8 0.00015 36.0 6.4 52 115-166 66-122 (207)
293 smart00594 UAS UAS domain. 77.3 5.4 0.00012 33.1 5.3 60 16-77 54-121 (122)
294 cd02972 DsbA_family DsbA famil 77.0 0.92 2E-05 34.6 0.4 55 242-296 4-90 (98)
295 PF13098 Thioredoxin_2: Thiore 76.2 3 6.5E-05 33.4 3.3 38 40-77 72-112 (112)
296 cd02958 UAS UAS family; UAS is 76.1 6.3 0.00014 32.1 5.3 63 16-80 44-110 (114)
297 PF13462 Thioredoxin_4: Thiore 75.2 2 4.4E-05 36.7 2.1 37 278-319 125-161 (162)
298 KOG0911|consensus 74.9 1.3 2.8E-05 41.2 0.8 72 240-312 22-93 (227)
299 PRK03147 thiol-disulfide oxido 74.6 8.2 0.00018 33.4 5.9 63 16-79 85-170 (173)
300 TIGR02740 TraF-like TraF-like 74.4 6.2 0.00013 37.9 5.4 78 4-82 175-265 (271)
301 cd03010 TlpA_like_DsbE TlpA-li 73.8 3.3 7.2E-05 34.1 3.1 45 27-73 79-126 (127)
302 cd03068 PDI_b_ERp72 PDIb famil 73.6 22 0.00048 28.9 7.8 41 105-148 7-48 (107)
303 COG3531 Predicted protein-disu 72.1 2.6 5.7E-05 38.5 2.1 44 279-322 164-209 (212)
304 PRK12759 bifunctional gluaredo 71.7 6.6 0.00014 40.0 5.2 22 120-141 4-25 (410)
305 cd03008 TryX_like_RdCVF Trypar 68.9 0.49 1.1E-05 41.2 -3.2 70 235-304 25-128 (146)
306 cd03023 DsbA_Com1_like DsbA fa 68.6 4 8.7E-05 34.2 2.5 37 277-318 117-153 (154)
307 TIGR00385 dsbE periplasmic pro 68.2 6.3 0.00014 34.7 3.7 53 27-81 116-171 (173)
308 PF13192 Thioredoxin_3: Thiore 68.0 4 8.7E-05 30.9 2.1 64 8-78 10-76 (76)
309 cd02964 TryX_like_family Trypa 67.5 0.85 1.8E-05 38.2 -1.9 69 236-304 18-115 (132)
310 cd02959 ERp19 Endoplasmic reti 67.4 0.93 2E-05 37.7 -1.7 82 238-320 22-111 (117)
311 PF02630 SCO1-SenC: SCO1/SenC; 66.1 12 0.00025 33.3 5.0 48 115-162 51-102 (174)
312 COG2761 FrnE Predicted dithiol 64.2 7 0.00015 36.5 3.3 43 280-326 175-217 (225)
313 cd03011 TlpA_like_ScsD_MtbDsbE 63.0 12 0.00026 30.3 4.2 35 41-75 84-120 (123)
314 PF13905 Thioredoxin_8: Thiore 63.0 0.33 7.2E-06 37.9 -5.0 60 240-300 6-94 (95)
315 PRK15317 alkyl hydroperoxide r 61.6 45 0.00098 34.7 9.2 29 116-144 18-46 (517)
316 cd02952 TRP14_like Human TRX-r 60.2 13 0.00027 31.3 3.9 37 25-61 59-103 (119)
317 COG0386 BtuE Glutathione perox 59.8 42 0.00092 29.6 7.1 39 115-157 24-66 (162)
318 TIGR02742 TrbC_Ftype type-F co 59.7 8.3 0.00018 33.0 2.7 44 278-321 60-114 (130)
319 PHA03075 glutaredoxin-like pro 56.8 7.3 0.00016 32.6 1.8 30 117-146 2-31 (123)
320 PF01323 DSBA: DSBA-like thior 56.6 8.7 0.00019 33.8 2.5 26 120-145 2-27 (193)
321 PF13743 Thioredoxin_5: Thiore 55.9 14 0.0003 32.9 3.7 36 122-157 2-37 (176)
322 KOG1651|consensus 53.9 51 0.0011 29.4 6.7 44 115-158 33-77 (171)
323 KOG0914|consensus 53.1 8.8 0.00019 35.8 1.9 47 13-61 161-218 (265)
324 PF00255 GSHPx: Glutathione pe 52.9 56 0.0012 26.9 6.5 53 98-158 10-63 (108)
325 TIGR03140 AhpF alkyl hydropero 52.8 82 0.0018 32.8 9.4 65 289-366 61-127 (515)
326 cd03024 DsbA_FrnE DsbA family, 52.0 12 0.00026 33.2 2.7 37 278-318 164-200 (201)
327 PF07449 HyaE: Hydrogenase-1 e 51.4 17 0.00037 30.0 3.2 43 25-69 59-103 (107)
328 PRK10954 periplasmic protein d 50.9 13 0.00027 33.9 2.6 28 278-307 156-183 (207)
329 PF13743 Thioredoxin_5: Thiore 49.9 6.7 0.00015 35.0 0.6 21 277-297 135-155 (176)
330 cd03068 PDI_b_ERp72 PDIb famil 48.9 31 0.00068 28.0 4.4 58 15-79 39-106 (107)
331 cd02966 TlpA_like_family TlpA- 48.0 43 0.00092 25.7 5.0 42 25-66 51-116 (116)
332 COG2143 Thioredoxin-related pr 47.5 22 0.00047 31.6 3.3 40 38-77 103-145 (182)
333 PRK13728 conjugal transfer pro 47.1 4.6 0.0001 36.5 -0.9 81 242-322 76-171 (181)
334 PRK15412 thiol:disulfide inter 44.5 33 0.00071 30.5 4.2 41 41-81 133-176 (185)
335 COG0821 gcpE 1-hydroxy-2-methy 42.7 46 0.00099 33.0 5.1 104 215-322 236-351 (361)
336 PRK14018 trifunctional thiored 40.6 30 0.00065 36.4 3.8 49 31-81 122-173 (521)
337 cd02977 ArsC_family Arsenate R 40.1 19 0.0004 28.9 1.7 32 121-158 2-33 (105)
338 cd03022 DsbA_HCCA_Iso DsbA fam 40.0 21 0.00045 31.3 2.2 36 278-318 156-191 (192)
339 cd03019 DsbA_DsbA DsbA family, 39.8 21 0.00046 30.8 2.2 29 277-307 131-159 (178)
340 cd03035 ArsC_Yffb Arsenate Red 38.7 20 0.00044 29.1 1.7 34 121-160 2-35 (105)
341 COG4232 Thiol:disulfide interc 38.7 35 0.00077 36.2 3.9 57 24-80 506-567 (569)
342 PF09673 TrbC_Ftype: Type-F co 37.7 31 0.00067 28.5 2.7 22 277-298 59-80 (113)
343 cd03074 PDI_b'_Calsequestrin_C 35.0 2.3E+02 0.005 23.6 7.2 40 116-155 20-61 (120)
344 cd03037 GST_N_GRX2 GST_N famil 34.5 31 0.00066 25.1 2.0 67 242-319 4-70 (71)
345 TIGR02738 TrbB type-F conjugat 34.3 8 0.00017 33.8 -1.4 81 241-321 56-152 (153)
346 cd02991 UAS_ETEA UAS family, E 33.7 1.1E+02 0.0023 25.4 5.4 62 17-80 45-112 (116)
347 PRK10877 protein disulfide iso 33.5 41 0.00088 31.4 3.1 39 37-79 189-229 (232)
348 PF04592 SelP_N: Selenoprotein 33.1 47 0.001 31.3 3.4 42 115-156 25-70 (238)
349 TIGR01617 arsC_related transcr 33.0 38 0.00081 27.9 2.5 35 121-161 2-36 (117)
350 PF05768 DUF836: Glutaredoxin- 30.8 48 0.001 25.3 2.6 66 11-78 13-81 (81)
351 KOG2792|consensus 30.7 49 0.0011 31.7 3.1 26 297-322 250-275 (280)
352 cd03036 ArsC_like Arsenate Red 30.4 33 0.00072 28.0 1.8 33 121-159 2-34 (111)
353 PRK01655 spxA transcriptional 29.6 41 0.0009 28.4 2.3 35 120-160 2-36 (131)
354 KOG2603|consensus 29.0 54 0.0012 32.2 3.1 56 26-83 104-168 (331)
355 cd03060 GST_N_Omega_like GST_N 26.8 47 0.001 24.2 1.9 21 121-141 2-22 (71)
356 KOG2507|consensus 26.6 2.4E+02 0.0051 29.1 7.2 52 268-319 54-108 (506)
357 cd03025 DsbA_FrnE_like DsbA fa 26.1 82 0.0018 27.5 3.7 29 120-148 3-31 (193)
358 cd03020 DsbA_DsbC_DsbG DsbA fa 24.4 57 0.0012 29.2 2.4 36 38-77 160-197 (197)
359 cd02955 SSP411 TRX domain, SSP 24.2 1.1E+02 0.0023 25.8 3.8 39 16-58 42-90 (124)
360 TIGR00612 ispG_gcpE 1-hydroxy- 24.0 76 0.0017 31.5 3.2 68 240-307 255-334 (346)
361 KOG3171|consensus 23.3 68 0.0015 30.0 2.6 55 25-82 189-252 (273)
362 COG3634 AhpF Alkyl hydroperoxi 22.8 3.7E+02 0.008 27.4 7.6 51 266-320 146-196 (520)
363 PRK00366 ispG 4-hydroxy-3-meth 22.5 1E+02 0.0022 30.9 3.8 80 240-319 264-354 (360)
364 cd03032 ArsC_Spx Arsenate Redu 22.0 71 0.0015 26.1 2.3 33 120-158 2-34 (115)
365 cd03025 DsbA_FrnE_like DsbA fa 21.7 54 0.0012 28.7 1.6 24 277-300 157-180 (193)
366 PF04551 GcpE: GcpE protein; 21.5 1.1E+02 0.0025 30.6 3.9 55 266-320 297-357 (359)
367 PRK12559 transcriptional regul 21.3 73 0.0016 27.0 2.3 35 120-160 2-36 (131)
368 PF11009 DUF2847: Protein of u 20.8 77 0.0017 26.1 2.2 48 26-73 51-104 (105)
369 PF00737 PsbH: Photosystem II 20.5 43 0.00094 23.9 0.5 7 2-8 18-24 (52)
No 1
>KOG0190|consensus
Probab=99.92 E-value=1.5e-25 Score=225.66 Aligned_cols=311 Identities=15% Similarity=0.181 Sum_probs=209.3
Q ss_pred ccCCCCCCchHHHhhcCC-CCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHHhCcCCc
Q psy1110 7 GTLNKEDTSPLAKEIVKP-KAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFVRNPQAT 83 (366)
Q Consensus 7 ~~~~~~~~~~la~e~~~~-~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi~~~~~~ 83 (366)
..|.+|.+ ..|.+|... +.|++++|||.++ .++|++|+|+ ||+++|++|.....|.|+|+.+.|+.||++...+
T Consensus 58 k~LaPey~-kAA~~Lke~~s~i~LakVDat~~--~~~~~~y~v~gyPTlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gP 134 (493)
T KOG0190|consen 58 KALAPEYE-KAATELKEEGSPVKLAKVDATEE--SDLASKYEVRGYPTLKIFRNGRSAQDYNGPREADGIVKWLKKQSGP 134 (493)
T ss_pred hhhCcHHH-HHHHHhhccCCCceeEEeecchh--hhhHhhhcCCCCCeEEEEecCCcceeccCcccHHHHHHHHHhccCC
Confidence 34555544 677777755 6899999999776 4999999999 9999999998789999999999999999987665
Q ss_pred chhhhccCC---------Cc------------C------------C--------------CCC---c---eEE-------
Q psy1110 84 SEEVKKKEQ---------DW------------A------------D--------------TES---E---VVH------- 103 (366)
Q Consensus 84 ~~~~~~~~~---------~~------------~------------~--------------~~~---~---v~~------- 103 (366)
....-.... +. . + ... . ++.
T Consensus 135 a~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~~~~~~~~a~~l~~d~~F~~ts~~~~~~~~~~~~~~~~~i~l~kk~d~~ 214 (493)
T KOG0190|consen 135 ASKTLKTVDEAEEFLSKKDVVVIGFFKDLESLAESFFDAASKLRDDYKFAHTSDSDVAKKLELNTEGTFPIVLFKKFDEL 214 (493)
T ss_pred CceecccHHHHHhhccCCceEEEEEecccccchHHHHHHHHhccccceeeccCcHhHHhhccCCCCCcceEEeccccccc
Confidence 322100000 00 0 0 000 0 111
Q ss_pred -------ecchhhhhhhcc--------------------CCeEEEEEE-CCCChhhhcccHHHHHHHHHHhccccEEEee
Q psy1110 104 -------LTDDNFDLVIQE--------------------ESSVLVMFY-APWCGHCKKLKPEYEEAAATMKQQRAYYGMG 155 (366)
Q Consensus 104 -------l~~~~~~~~i~~--------------------~k~vlV~F~-a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~ 155 (366)
++.+.+.++|.. .-..-+.|| ..-|..-...++.+.++|++|++.+.|+.+|
T Consensus 215 ~~~~~~~~~~~~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~vAk~f~~~l~Fi~~d 294 (493)
T KOG0190|consen 215 LVKYDGSFTPELLKKFIQENSLPLVTEFTVANNAKIYSSFVKLGLDFFVFFKCNRFEELRKKFEEVAKKFKGKLRFILID 294 (493)
T ss_pred hhhcccccCHHHHHHHHHHhcccccceecccccceeeccccccceeEEeccccccHHHHHHHHHHHHHhcccceEEEEEC
Confidence 111112222211 001111122 2246566778889999999999999999997
Q ss_pred ccCCcccccccceee------eeecCCCcccccCCCCCCCCCCCccc-cCCCCCCCCCCCCCCCCCCCCC-CChhhhH--
Q psy1110 156 MLRHRPQASNVAVVS------SLRNKNGEPTTHPSGTPQTSDTPRTQ-CCHPAAHSPASPIRQTPHPEPH-RPVRSLL-- 225 (366)
Q Consensus 156 ~~~~~~~~~~~~v~~------~l~~~~G~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-- 225 (366)
-.+.......+|+.. ++...+.+..+...+........+.. ....+.....+..+|+.++..- .+|+.+.
T Consensus 295 ~e~~~~~~~~~Gl~~~~~~~~~v~~~~~~~Ky~~~~e~~~~~~ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgk 374 (493)
T KOG0190|consen 295 PESFARVLEFFGLEEEQLPIRAVILNEDGSKYPLEEEELDQENIESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGK 374 (493)
T ss_pred hHHhhHHHHhcCcccccCCeeEEeeccccccccCccccccHHHHHHHHHHHhcCccccccccCCCCcccccCCeEEEeec
Confidence 766666777777652 33333333333333322111111111 1112222455566777777754 6776653
Q ss_pred hhhhcccCCCCCcCCcceeeeccccccccccC---CCCCCCCccceeEEEEecccccccccccccccCCeEEEecCCc--
Q psy1110 226 LLLLGSYWRPESVGRGWELRQVGTGKRIKSIN---SGSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGS-- 300 (366)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~---~~~~~~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~-- 300 (366)
.+..-.++..++|=..|+++|||||++++|+| |++|++ ..++.+|+||.+.|+. ....+++||||++|+.|.
T Consensus 375 nfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~-~~~vviAKmDaTaNd~--~~~~~~~fPTI~~~pag~k~ 451 (493)
T KOG0190|consen 375 NFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKD-DENVVIAKMDATANDV--PSLKVDGFPTILFFPAGHKS 451 (493)
T ss_pred CHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcC-CCCcEEEEeccccccC--ccccccccceEEEecCCCCC
Confidence 45556677788888999999999999999995 889998 6789999999999975 456788899999999886
Q ss_pred eeeecCCCCCHHHHHHHHhCCCC
Q psy1110 301 VAFDAGHLRDASRLVEFMRDPTE 323 (366)
Q Consensus 301 ~~~~~~g~~~~e~l~~fi~~~~~ 323 (366)
....|.|.|+.+.|..|+..+..
T Consensus 452 ~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 452 NPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred CCcccCCCcchHHHHhhhccCCC
Confidence 46789999999999999998876
No 2
>KOG0191|consensus
Probab=99.89 E-value=9e-23 Score=203.77 Aligned_cols=222 Identities=31% Similarity=0.539 Sum_probs=176.1
Q ss_pred hHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHHhCcCCcchhhhccCCC
Q psy1110 16 PLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFVRNPQATSEEVKKKEQD 93 (366)
Q Consensus 16 ~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi~~~~~~~~~~~~~~~~ 93 (366)
.+|+.|+ +.+.+|.|||.+ +.++|++++|. ||+.+|.++.....|.|.++.+++.+|+.+........
T Consensus 71 ~~~~~l~--~~~~~~~vd~~~--~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 140 (383)
T KOG0191|consen 71 KLAKALK--GKVKIGAVDCDE--HKDLCEKYGIQGFPTLKVFRPGKKPIDYSGPRNAESLAEFLIKELEPSVKK------ 140 (383)
T ss_pred HHHHHhc--CceEEEEeCchh--hHHHHHhcCCccCcEEEEEcCCCceeeccCcccHHHHHHHHHHhhcccccc------
Confidence 5777777 689999999966 55999999999 99999999856789999999999999998877763221
Q ss_pred cCCCCCceEEecchhhhhhh-ccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeee
Q psy1110 94 WADTESEVVHLTDDNFDLVI-QEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSL 172 (366)
Q Consensus 94 ~~~~~~~v~~l~~~~~~~~i-~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l 172 (366)
..+..+..|+..+|+..+ +.+..++|.||+|||+||+.+.|.|++++..++..
T Consensus 141 --~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~------------------------ 194 (383)
T KOG0191|consen 141 --LVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSK------------------------ 194 (383)
T ss_pred --ccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccC------------------------
Confidence 111259999999999866 56889999999999999999999999999987643
Q ss_pred ecCCCcccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeecccccc
Q psy1110 173 RNKNGEPTTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKR 252 (366)
Q Consensus 173 ~~~~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~ 252 (366)
T Consensus 195 -------------------------------------------------------------------------------- 194 (383)
T KOG0191|consen 195 -------------------------------------------------------------------------------- 194 (383)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCCccceeEEEEecccccccccccccccCCeEEEecCCce-eeecCCCCCHHHHHHHHhCCCCCCCCCCCC
Q psy1110 253 IKSINSGSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSV-AFDAGHLRDASRLVEFMRDPTEPPPPPPPE 331 (366)
Q Consensus 253 ~~p~~~~~~~~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~-~~~~~g~~~~e~l~~fi~~~~~~~~~~~~~ 331 (366)
..+.++.+|++....++.+++|++|||+++|++|.. ...|.|.|+.+.+++|+........+++..
T Consensus 195 -------------~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~~~~~ 261 (383)
T KOG0191|consen 195 -------------ENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIPEPEL 261 (383)
T ss_pred -------------cceEEEeeccchHHHHhhhhcccCCceEEEecCCCcccccccccccHHHHHHHHHhhcCCCCCCccc
Confidence 227899999999999999999999999999999987 889999999999999999998876444443
Q ss_pred CCCCCCCCeeEEe-chhcHHHHhhccCceEEEEecC
Q psy1110 332 PAWAEEPSEVYHL-GADNFASTLRKKKHALVMFYAP 366 (366)
Q Consensus 332 ~~~~~~~~~v~~l-t~~~~~~~~~~~~~~~v~fy~~ 366 (366)
..+.........+ +.+++.........+++.||+|
T Consensus 262 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 297 (383)
T KOG0191|consen 262 KEIEDKDTFSPTFLDTAEFLDSLEKKKNKFVKFYAP 297 (383)
T ss_pred ccccCccccccchhhhhhhhhhhHHhhhhHhhhhcc
Confidence 3332221111111 1155555665666778888764
No 3
>PTZ00102 disulphide isomerase; Provisional
Probab=99.88 E-value=1.1e-21 Score=200.20 Aligned_cols=189 Identities=21% Similarity=0.399 Sum_probs=159.4
Q ss_pred CchHHHhhcCCCCeEEEEeeecccCCcc-hhccCCcc--ceEEeeecCeeeEeecCC----ccHHHHHHHHhCcCCcchh
Q psy1110 14 TSPLAKEIVKPKAITLGLIERLTEKADP-VCTREKAK--KKVRRQKNAEVKYVYENG----NTKDKIIEFVRNPQATSEE 86 (366)
Q Consensus 14 ~~~la~e~~~~~~I~~~~Vdc~~~~~~~-lc~~~~I~--Pti~~f~~g~~~~~y~g~----r~~~~i~~fi~~~~~~~~~ 86 (366)
...+|+.+. +++.|+.+|+.. +.. ++..+|++ |++.+...++ .+.|.+. ++.++|.+|+.+...+...
T Consensus 269 ~~~~A~~~~--~~~~f~~vd~~~--~~~~~~~~~gi~~~P~~~i~~~~~-~y~~~~~~~~~~~~~~l~~Fv~~~~~gk~~ 343 (477)
T PTZ00102 269 VRKVARKLR--EKYAFVWLDTEQ--FGSHAKEHLLIEEFPGLAYQSPAG-RYLLPPAKESFDSVEALIEFFKDVEAGKVE 343 (477)
T ss_pred HHHHHHhcc--CceEEEEEechh--cchhHHHhcCcccCceEEEEcCCc-ccCCCccccccCCHHHHHHHHHHHhCCCCC
Confidence 346777777 789999999954 555 89999999 9998877433 4555554 7899999999999988888
Q ss_pred hhccCCCcCC-CCCceEEecchhhhhh-hccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCccccc
Q psy1110 87 VKKKEQDWAD-TESEVVHLTDDNFDLV-IQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQAS 164 (366)
Q Consensus 87 ~~~~~~~~~~-~~~~v~~l~~~~~~~~-i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~ 164 (366)
+..++++++. ..+.+..|++++|++. ++++++++|.|||+||++|+.+.|.|+++++.+.+.
T Consensus 344 ~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~---------------- 407 (477)
T PTZ00102 344 KSIKSEPIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDN---------------- 407 (477)
T ss_pred cccccCCCCCCCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccC----------------
Confidence 8877777654 4667999999999987 577899999999999999999999999999988654
Q ss_pred ccceeeeeecCCCcccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCccee
Q psy1110 165 NVAVVSSLRNKNGEPTTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWEL 244 (366)
Q Consensus 165 ~~~v~~~l~~~~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 244 (366)
T Consensus 408 -------------------------------------------------------------------------------- 407 (477)
T PTZ00102 408 -------------------------------------------------------------------------------- 407 (477)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccccccccccCCCCCCCCccceeEEEEecccccccccccccccCCeEEEecCCcee-eecCCCCCHHHHHHHHhCCCC
Q psy1110 245 RQVGTGKRIKSINSGSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVA-FDAGHLRDASRLVEFMRDPTE 323 (366)
Q Consensus 245 ~~c~~c~~~~p~~~~~~~~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~-~~~~g~~~~e~l~~fi~~~~~ 323 (366)
..+.++++|++.+...+..++|+++||+++|++|..+ .+|.|.++.+.|.+||+++..
T Consensus 408 ---------------------~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 408 ---------------------DSIIVAKMNGTANETPLEEFSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHAT 466 (477)
T ss_pred ---------------------CcEEEEEEECCCCccchhcCCCcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCC
Confidence 2378899999999999999999999999999888644 689999999999999999885
Q ss_pred C
Q psy1110 324 P 324 (366)
Q Consensus 324 ~ 324 (366)
-
T Consensus 467 ~ 467 (477)
T PTZ00102 467 N 467 (477)
T ss_pred C
Confidence 3
No 4
>KOG0190|consensus
Probab=99.87 E-value=6.2e-22 Score=199.63 Aligned_cols=137 Identities=41% Similarity=0.719 Sum_probs=125.0
Q ss_pred CCceEEecchhhhhhhccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCC
Q psy1110 98 ESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNG 177 (366)
Q Consensus 98 ~~~v~~l~~~~~~~~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G 177 (366)
++.|..|+.+||+.+|.++..++|.|||||||||++++|.++++|..++..
T Consensus 24 ~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~----------------------------- 74 (493)
T KOG0190|consen 24 EEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEE----------------------------- 74 (493)
T ss_pred ccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhcc-----------------------------
Confidence 458999999999999999999999999999999999999999999998775
Q ss_pred cccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccC
Q psy1110 178 EPTTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSIN 257 (366)
Q Consensus 178 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~ 257 (366)
T Consensus 75 -------------------------------------------------------------------------------- 74 (493)
T KOG0190|consen 75 -------------------------------------------------------------------------------- 74 (493)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccceeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q psy1110 258 SGSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTEPPPPPPPEPAWAEE 337 (366)
Q Consensus 258 ~~~~~~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~~~~~~~~~~~~~~~~~~ 337 (366)
.+.+.++++||+.+..+|.+|+|+|||||.+|++|+....|.|.|+.+.|+.||.+.++|.
T Consensus 75 -------~s~i~LakVDat~~~~~~~~y~v~gyPTlkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa------------ 135 (493)
T KOG0190|consen 75 -------GSPVKLAKVDATEESDLASKYEVRGYPTLKIFRNGRSAQDYNGPREADGIVKWLKKQSGPA------------ 135 (493)
T ss_pred -------CCCceeEEeecchhhhhHhhhcCCCCCeEEEEecCCcceeccCcccHHHHHHHHHhccCCC------------
Confidence 2458999999999999999999999999999999998899999999999999999999988
Q ss_pred CCeeEEec-hhcHHHHhhccCceEEEEec
Q psy1110 338 PSEVYHLG-ADNFASTLRKKKHALVMFYA 365 (366)
Q Consensus 338 ~~~v~~lt-~~~~~~~~~~~~~~~v~fy~ 365 (366)
+..|. .+.+..++.++..+++.|+.
T Consensus 136 ---~~~l~~~~~a~~~l~~~~~~vig~F~ 161 (493)
T KOG0190|consen 136 ---SKTLKTVDEAEEFLSKKDVVVIGFFK 161 (493)
T ss_pred ---ceecccHHHHHhhccCCceEEEEEec
Confidence 66674 68888888887777777763
No 5
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.85 E-value=2.7e-21 Score=161.37 Aligned_cols=104 Identities=19% Similarity=0.350 Sum_probs=95.2
Q ss_pred CCCCceEEecchhhhhh---hccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeee
Q psy1110 96 DTESEVVHLTDDNFDLV---IQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSL 172 (366)
Q Consensus 96 ~~~~~v~~l~~~~~~~~---i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l 172 (366)
+..+.|..|++.||+++ +++++.++|.|||+||+||+.+.|.|+++++.+++.
T Consensus 6 ~~~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~------------------------ 61 (113)
T cd03006 6 SQRSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ------------------------ 61 (113)
T ss_pred CCCCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC------------------------
Confidence 44568999999999986 578999999999999999999999999999998665
Q ss_pred ecCCCcccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeecccccc
Q psy1110 173 RNKNGEPTTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKR 252 (366)
Q Consensus 173 ~~~~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~ 252 (366)
T Consensus 62 -------------------------------------------------------------------------------- 61 (113)
T cd03006 62 -------------------------------------------------------------------------------- 61 (113)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCCccceeEEEEecccccccc-cccccccCCeEEEecCCceeeecCCCCCHHHHHHHH
Q psy1110 253 IKSINSGSFSPRQITGILAAVDVTREKSLG-KRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFM 318 (366)
Q Consensus 253 ~~p~~~~~~~~~~~~v~~a~vd~~~~~~l~-~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi 318 (366)
+.++++||+.+..+| ++|+|+++|||++|++|+...+|.|.++.+.|+.|+
T Consensus 62 ---------------v~~~~Vd~d~~~~l~~~~~~I~~~PTl~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 62 ---------------VLFVAINCWWPQGKCRKQKHFFYFPVIHLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred ---------------eEEEEEECCCChHHHHHhcCCcccCEEEEEECCccceEEeCCCCHHHHHhhC
Confidence 778999999999999 589999999999999999889999999999999885
No 6
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.84 E-value=3.7e-20 Score=187.21 Aligned_cols=191 Identities=27% Similarity=0.417 Sum_probs=158.6
Q ss_pred CchHHHhhcCCCCeEEEEeeecccCCcchhccCCcc----ceEEeeecCe-eeEeecC-CccHHHHHHHHhCcCCcchhh
Q psy1110 14 TSPLAKEIVKPKAITLGLIERLTEKADPVCTREKAK----KKVRRQKNAE-VKYVYEN-GNTKDKIIEFVRNPQATSEEV 87 (366)
Q Consensus 14 ~~~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~----Pti~~f~~g~-~~~~y~g-~r~~~~i~~fi~~~~~~~~~~ 87 (366)
...+|+.+.. ..+.|+.+||.. +..+|..+|+. |++.++.... ..+.|.+ .++.++|.+|+.+...+...|
T Consensus 257 ~~~~a~~~~~-~~i~f~~~d~~~--~~~~~~~~~~~~~~~P~~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~ 333 (462)
T TIGR01130 257 FLEAAKKFRG-KFVNFAVADEED--FGRELEYFGLKAEKFPAVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKP 333 (462)
T ss_pred HHHHHHHCCC-CeEEEEEecHHH--hHHHHHHcCCCccCCceEEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCe
Confidence 3456666652 389999999954 66899999997 9999998654 4566666 789999999999999998888
Q ss_pred hccCCCcCC-CCCceEEecchhhhhhh-ccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccc
Q psy1110 88 KKKEQDWAD-TESEVVHLTDDNFDLVI-QEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASN 165 (366)
Q Consensus 88 ~~~~~~~~~-~~~~v~~l~~~~~~~~i-~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~ 165 (366)
..++++++. ..+.+..|+..+|++++ +.+++++|.|||+||++|+.+.|.|+++++.+.+.
T Consensus 334 ~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~----------------- 396 (462)
T TIGR01130 334 YLKSEPIPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDA----------------- 396 (462)
T ss_pred eeccCCCCccCCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcC-----------------
Confidence 888888866 46689999999999976 56899999999999999999999999999998762
Q ss_pred cceeeeeecCCCcccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceee
Q psy1110 166 VAVVSSLRNKNGEPTTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELR 245 (366)
Q Consensus 166 ~~v~~~l~~~~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 245 (366)
T Consensus 397 -------------------------------------------------------------------------------- 396 (462)
T TIGR01130 397 -------------------------------------------------------------------------------- 396 (462)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccccccccccCCCCCCCCccceeEEEEecccccccccccccccCCeEEEecCCcee--eecCCCCCHHHHHHHHhCCCC
Q psy1110 246 QVGTGKRIKSINSGSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVA--FDAGHLRDASRLVEFMRDPTE 323 (366)
Q Consensus 246 ~c~~c~~~~p~~~~~~~~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~--~~~~g~~~~e~l~~fi~~~~~ 323 (366)
..++.++.+|++.+.. .. ++|+++||+++|++|+.. ..+.|.++.+.|++||.++..
T Consensus 397 -------------------~~~i~~~~id~~~n~~-~~-~~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 455 (462)
T TIGR01130 397 -------------------ESDVVIAKMDATANDV-PP-FEVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHAT 455 (462)
T ss_pred -------------------CCcEEEEEEECCCCcc-CC-CCccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCC
Confidence 0127889999987753 33 999999999999988753 688999999999999998876
Q ss_pred CC
Q psy1110 324 PP 325 (366)
Q Consensus 324 ~~ 325 (366)
..
T Consensus 456 ~~ 457 (462)
T TIGR01130 456 FP 457 (462)
T ss_pred CC
Confidence 44
No 7
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.83 E-value=1.4e-20 Score=152.74 Aligned_cols=100 Identities=28% Similarity=0.486 Sum_probs=93.2
Q ss_pred ceEEecchhhhhhhccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCCcc
Q psy1110 100 EVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGEP 179 (366)
Q Consensus 100 ~v~~l~~~~~~~~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~~ 179 (366)
.+..|+.++|++.+.++++++|+|||+||++|+.+.|.|+++++.+++.
T Consensus 2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~------------------------------- 50 (101)
T cd03003 2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV------------------------------- 50 (101)
T ss_pred CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc-------------------------------
Confidence 5788999999999988899999999999999999999999999998765
Q ss_pred cccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCCC
Q psy1110 180 TTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINSG 259 (366)
Q Consensus 180 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~~ 259 (366)
T Consensus 51 -------------------------------------------------------------------------------- 50 (101)
T cd03003 51 -------------------------------------------------------------------------------- 50 (101)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccceeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHH
Q psy1110 260 SFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFM 318 (366)
Q Consensus 260 ~~~~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi 318 (366)
+.++++||+++..+|++++|+++||+++|++|+...+|.|.++.+.|.+|+
T Consensus 51 --------~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 51 --------IRIGAVNCGDDRMLCRSQGVNSYPSLYVFPSGMNPEKYYGDRSKESLVKFA 101 (101)
T ss_pred --------eEEEEEeCCccHHHHHHcCCCccCEEEEEcCCCCcccCCCCCCHHHHHhhC
Confidence 778999999999999999999999999999999889999999999998874
No 8
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.82 E-value=5.5e-20 Score=151.20 Aligned_cols=107 Identities=37% Similarity=0.617 Sum_probs=94.5
Q ss_pred CceEEecchhhhhhhccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCCc
Q psy1110 99 SEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGE 178 (366)
Q Consensus 99 ~~v~~l~~~~~~~~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~ 178 (366)
+.+..|++++|+++++++++++|.|||+||++|+.+.|.|+++++.+++..
T Consensus 1 ~~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~----------------------------- 51 (108)
T cd02996 1 SEIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEF----------------------------- 51 (108)
T ss_pred CceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhcc-----------------------------
Confidence 368899999999999889999999999999999999999999999886540
Q ss_pred ccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCC
Q psy1110 179 PTTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINS 258 (366)
Q Consensus 179 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~ 258 (366)
T Consensus 52 -------------------------------------------------------------------------------- 51 (108)
T cd02996 52 -------------------------------------------------------------------------------- 51 (108)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccceeEEEEecccccccccccccccCCeEEEecCCc-eeeecCCCCCHHHHHHHH
Q psy1110 259 GSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGS-VAFDAGHLRDASRLVEFM 318 (366)
Q Consensus 259 ~~~~~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~-~~~~~~g~~~~e~l~~fi 318 (366)
. ...++.++++||+.+..++.+|+|+++||+++|++|+ ....|.|.++.++|.+||
T Consensus 52 ---~-~~~~~~~~~vd~d~~~~l~~~~~v~~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 52 ---P-DAGKVVWGKVDCDKESDIADRYRINKYPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred ---C-CCCcEEEEEEECCCCHHHHHhCCCCcCCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 0 0013789999999999999999999999999999998 458899999999999986
No 9
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.81 E-value=6.6e-20 Score=147.59 Aligned_cols=102 Identities=38% Similarity=0.699 Sum_probs=95.4
Q ss_pred eEEecchhhhhhhcc-CCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCCcc
Q psy1110 101 VVHLTDDNFDLVIQE-ESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGEP 179 (366)
Q Consensus 101 v~~l~~~~~~~~i~~-~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~~ 179 (366)
|..||+++|++.+.+ +++++|+||++||++|+.+.|.|+++++.+.+.
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~------------------------------- 49 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDN------------------------------- 49 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTT-------------------------------
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccc-------------------------------
Confidence 468999999999876 999999999999999999999999999998765
Q ss_pred cccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCCC
Q psy1110 180 TTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINSG 259 (366)
Q Consensus 180 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~~ 259 (366)
T Consensus 50 -------------------------------------------------------------------------------- 49 (103)
T PF00085_consen 50 -------------------------------------------------------------------------------- 49 (103)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccceeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhCC
Q psy1110 260 SFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDP 321 (366)
Q Consensus 260 ~~~~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~~ 321 (366)
+.++.+|++.+..++++|+|+++||+++|++|+...++.|.++.++|.+||+++
T Consensus 50 --------v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 50 --------VKFAKVDCDENKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp --------SEEEEEETTTSHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred --------cccchhhhhccchhhhccCCCCCCEEEEEECCcEEEEEECCCCHHHHHHHHHcC
Confidence 789999999999999999999999999999999999999999999999999753
No 10
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.81 E-value=1.1e-19 Score=148.02 Aligned_cols=100 Identities=31% Similarity=0.626 Sum_probs=90.9
Q ss_pred ceEEecchhhhhhh-ccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCCc
Q psy1110 100 EVVHLTDDNFDLVI-QEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGE 178 (366)
Q Consensus 100 ~v~~l~~~~~~~~i-~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~ 178 (366)
.+..|+.++|++++ +++++++|.|||+||++|+.+.|.|+++++++.+.
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~------------------------------ 51 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGK------------------------------ 51 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC------------------------------
Confidence 57789999999876 55789999999999999999999999999988655
Q ss_pred ccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCC
Q psy1110 179 PTTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINS 258 (366)
Q Consensus 179 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~ 258 (366)
T Consensus 52 -------------------------------------------------------------------------------- 51 (104)
T cd03004 52 -------------------------------------------------------------------------------- 51 (104)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccceeEEEEecccccccccccccccCCeEEEecCC-ceeeecCCCCC-HHHHHHHH
Q psy1110 259 GSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAG-SVAFDAGHLRD-ASRLVEFM 318 (366)
Q Consensus 259 ~~~~~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G-~~~~~~~g~~~-~e~l~~fi 318 (366)
+.++++||+.+..++++++|+++||+++|++| +...+|.|.++ .++|.+||
T Consensus 52 ---------~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 52 ---------VKVGSVDCQKYESLCQQANIRAYPTIRLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred ---------cEEEEEECCchHHHHHHcCCCcccEEEEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 67899999999999999999999999999998 88899999987 99999885
No 11
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.78 E-value=5.2e-19 Score=148.96 Aligned_cols=106 Identities=19% Similarity=0.217 Sum_probs=92.4
Q ss_pred CCceEEecchhhhhhh-ccCCeEEEEEECCCChh--hh--cccHHHHHHHHHHhccccEEEeeccCCcccccccceeeee
Q psy1110 98 ESEVVHLTDDNFDLVI-QEESSVLVMFYAPWCGH--CK--KLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSL 172 (366)
Q Consensus 98 ~~~v~~l~~~~~~~~i-~~~k~vlV~F~a~wC~~--Ck--~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l 172 (366)
...+..||++||++.+ +++.++++.|||+||++ |+ .+.|.++++|..+-..
T Consensus 8 ~~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~------------------------ 63 (120)
T cd03065 8 KDRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLED------------------------ 63 (120)
T ss_pred CcceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhc------------------------
Confidence 4578999999999876 55679999999999976 99 8899999999888322
Q ss_pred ecCCCcccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeecccccc
Q psy1110 173 RNKNGEPTTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKR 252 (366)
Q Consensus 173 ~~~~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~ 252 (366)
T Consensus 64 -------------------------------------------------------------------------------- 63 (120)
T cd03065 64 -------------------------------------------------------------------------------- 63 (120)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCCccceeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhCC
Q psy1110 253 IKSINSGSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDP 321 (366)
Q Consensus 253 ~~p~~~~~~~~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~~ 321 (366)
.++.++++|++++..++++|+|+++|||++|++|+.+. |.|.++.+.|.+||++.
T Consensus 64 -------------~~v~~~kVD~d~~~~La~~~~I~~iPTl~lfk~G~~v~-~~G~~~~~~l~~~l~~~ 118 (120)
T cd03065 64 -------------KGIGFGLVDSKKDAKVAKKLGLDEEDSIYVFKDDEVIE-YDGEFAADTLVEFLLDL 118 (120)
T ss_pred -------------CCCEEEEEeCCCCHHHHHHcCCccccEEEEEECCEEEE-eeCCCCHHHHHHHHHHH
Confidence 12789999999999999999999999999999999775 99999999999999864
No 12
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.78 E-value=8.8e-19 Score=141.94 Aligned_cols=100 Identities=37% Similarity=0.620 Sum_probs=88.8
Q ss_pred ceEEecchhhhhhhccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCCcc
Q psy1110 100 EVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGEP 179 (366)
Q Consensus 100 ~v~~l~~~~~~~~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~~ 179 (366)
.|..|+.++|++++++ . ++|+|||+||++|+.+.|.|+++++.++..
T Consensus 2 ~v~~l~~~~f~~~~~~-~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~------------------------------- 48 (101)
T cd02994 2 NVVELTDSNWTLVLEG-E-WMIEFYAPWCPACQQLQPEWEEFADWSDDL------------------------------- 48 (101)
T ss_pred ceEEcChhhHHHHhCC-C-EEEEEECCCCHHHHHHhHHHHHHHHhhccC-------------------------------
Confidence 6889999999998854 3 799999999999999999999999876432
Q ss_pred cccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCCC
Q psy1110 180 TTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINSG 259 (366)
Q Consensus 180 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~~ 259 (366)
T Consensus 49 -------------------------------------------------------------------------------- 48 (101)
T cd02994 49 -------------------------------------------------------------------------------- 48 (101)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccceeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhC
Q psy1110 260 SFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRD 320 (366)
Q Consensus 260 ~~~~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~ 320 (366)
++.++++|++.+..++++|+|+++||+++|++|+ +.+|.|.++.++|.+|+++
T Consensus 49 -------~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~-~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 49 -------GINVAKVDVTQEPGLSGRFFVTALPTIYHAKDGV-FRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred -------CeEEEEEEccCCHhHHHHcCCcccCEEEEeCCCC-EEEecCCCCHHHHHHHHhC
Confidence 2778999999999999999999999999999998 4789999999999999864
No 13
>KOG0910|consensus
Probab=99.77 E-value=6.7e-19 Score=151.49 Aligned_cols=105 Identities=28% Similarity=0.403 Sum_probs=96.4
Q ss_pred CceEEecchhhhh-hhccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCC
Q psy1110 99 SEVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNG 177 (366)
Q Consensus 99 ~~v~~l~~~~~~~-~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G 177 (366)
..+..++..+|++ +++++.||+|+|||+|||||+.+.|.+++++.+|.+.
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~----------------------------- 93 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK----------------------------- 93 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe-----------------------------
Confidence 3577888999986 6688999999999999999999999999999999777
Q ss_pred cccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccC
Q psy1110 178 EPTTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSIN 257 (366)
Q Consensus 178 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~ 257 (366)
T Consensus 94 -------------------------------------------------------------------------------- 93 (150)
T KOG0910|consen 94 -------------------------------------------------------------------------------- 93 (150)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccceeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhCCC
Q psy1110 258 SGSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPT 322 (366)
Q Consensus 258 ~~~~~~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~~~ 322 (366)
++++++|.++..+++.+|+|+.+||+++|++|+.+.+..|..+.+.|.+||++..
T Consensus 94 ----------~k~~kvdtD~~~ela~~Y~I~avPtvlvfknGe~~d~~vG~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 94 ----------FKLYKVDTDEHPELAEDYEISAVPTVLVFKNGEKVDRFVGAVPKEQLRSLIKKFL 148 (150)
T ss_pred ----------EEEEEEccccccchHhhcceeeeeEEEEEECCEEeeeecccCCHHHHHHHHHHHh
Confidence 7888888888889999999999999999999999999999999999999998765
No 14
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.77 E-value=1.7e-18 Score=139.79 Aligned_cols=101 Identities=40% Similarity=0.748 Sum_probs=90.6
Q ss_pred eEEecchhhhhhhccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCCccc
Q psy1110 101 VVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGEPT 180 (366)
Q Consensus 101 v~~l~~~~~~~~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~~~ 180 (366)
+..|++++|+..+..+ .++|.|||+||++|+.+.|.|+++++++.+.
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~-------------------------------- 48 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNE-------------------------------- 48 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhcc--------------------------------
Confidence 6789999999998765 5999999999999999999999999998762
Q ss_pred ccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCCCC
Q psy1110 181 THPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINSGS 260 (366)
Q Consensus 181 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~~~ 260 (366)
T Consensus 49 -------------------------------------------------------------------------------- 48 (102)
T cd03005 49 -------------------------------------------------------------------------------- 48 (102)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccceeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHH
Q psy1110 261 FSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFM 318 (366)
Q Consensus 261 ~~~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi 318 (366)
..++.++++|++.+..++++|+|+++||+++|++|+.+.++.|.++.+.|.+||
T Consensus 49 ----~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 49 ----NPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred ----CCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeCCCeeeEeeCCCCHHHHHhhC
Confidence 012778999999999999999999999999999999889999999999998885
No 15
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.77 E-value=3e-18 Score=173.26 Aligned_cols=134 Identities=41% Similarity=0.733 Sum_probs=121.1
Q ss_pred ceEEecchhhhhhhccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCCcc
Q psy1110 100 EVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGEP 179 (366)
Q Consensus 100 ~v~~l~~~~~~~~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~~ 179 (366)
.|..|++++|+.++++++.++|.|||+||++|+.+.|.|.++++.+.+.
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~------------------------------- 50 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKK------------------------------- 50 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhc-------------------------------
Confidence 5788999999999999999999999999999999999999999988664
Q ss_pred cccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCCC
Q psy1110 180 TTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINSG 259 (366)
Q Consensus 180 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~~ 259 (366)
T Consensus 51 -------------------------------------------------------------------------------- 50 (462)
T TIGR01130 51 -------------------------------------------------------------------------------- 50 (462)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccceeEEEEecccccccccccccccCCeEEEecCCce-eeecCCCCCHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q psy1110 260 SFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSV-AFDAGHLRDASRLVEFMRDPTEPPPPPPPEPAWAEEP 338 (366)
Q Consensus 260 ~~~~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~-~~~~~g~~~~e~l~~fi~~~~~~~~~~~~~~~~~~~~ 338 (366)
..++.++++||+.+..+|++++|+++||+++|++|+. +..|.|.++.+.|.+|+.+.+.+.
T Consensus 51 -----~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~------------- 112 (462)
T TIGR01130 51 -----GPPIKLAKVDATEEKDLAQKYGVSGYPTLKIFRNGEDSVSDYNGPRDADGIVKYMKKQSGPA------------- 112 (462)
T ss_pred -----CCceEEEEEECCCcHHHHHhCCCccccEEEEEeCCccceeEecCCCCHHHHHHHHHHhcCCC-------------
Confidence 1338899999999999999999999999999999997 789999999999999999999877
Q ss_pred CeeEEec-hhcHHHHhhccCceEEEEe
Q psy1110 339 SEVYHLG-ADNFASTLRKKKHALVMFY 364 (366)
Q Consensus 339 ~~v~~lt-~~~~~~~~~~~~~~~v~fy 364 (366)
+.+++ .+++..++..+...+|.|+
T Consensus 113 --~~~i~~~~~~~~~~~~~~~~vi~~~ 137 (462)
T TIGR01130 113 --VKEIETVADLEAFLADDDVVVIGFF 137 (462)
T ss_pred --ceeecCHHHHHHHHhcCCcEEEEEE
Confidence 78885 6889999988778888776
No 16
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.76 E-value=2.2e-18 Score=141.09 Aligned_cols=100 Identities=45% Similarity=0.775 Sum_probs=88.1
Q ss_pred eEEecchhhhhhhc-cCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCCcc
Q psy1110 101 VVHLTDDNFDLVIQ-EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGEP 179 (366)
Q Consensus 101 v~~l~~~~~~~~i~-~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~~ 179 (366)
+..|++++|+..+. ++++++|.|||+||++|+.+.|.|+++++.+.+.
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~------------------------------- 50 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL------------------------------- 50 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC-------------------------------
Confidence 67899999999874 4778999999999999999999999999988655
Q ss_pred cccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCCC
Q psy1110 180 TTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINSG 259 (366)
Q Consensus 180 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~~ 259 (366)
T Consensus 51 -------------------------------------------------------------------------------- 50 (109)
T cd03002 51 -------------------------------------------------------------------------------- 50 (109)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccceeEEEEeccc--ccccccccccccCCeEEEecCCc-----eeeecCCCCCHHHHHHHHh
Q psy1110 260 SFSPRQITGILAAVDVTR--EKSLGKRFDIKGFPTLKYFRAGS-----VAFDAGHLRDASRLVEFMR 319 (366)
Q Consensus 260 ~~~~~~~~v~~a~vd~~~--~~~l~~~~~I~~~Ptl~~fk~G~-----~~~~~~g~~~~e~l~~fi~ 319 (366)
+.++.+|++. +..++++|+|+++||+++|++|+ ....|.|.++.++|++||.
T Consensus 51 --------~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 51 --------VQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred --------ceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCCcccccccccccCccCHHHHHHHhC
Confidence 5567777777 77899999999999999998886 5688999999999999984
No 17
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.75 E-value=3.4e-18 Score=158.62 Aligned_cols=109 Identities=38% Similarity=0.662 Sum_probs=97.3
Q ss_pred CCceEEecchhhhhhhcc-----CCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeee
Q psy1110 98 ESEVVHLTDDNFDLVIQE-----ESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSL 172 (366)
Q Consensus 98 ~~~v~~l~~~~~~~~i~~-----~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l 172 (366)
.+.+..|++++|++++.. +++++|+|||+||++|+.+.|.|+++++.+++.
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~------------------------ 84 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ------------------------ 84 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC------------------------
Confidence 457999999999998743 589999999999999999999999999988765
Q ss_pred ecCCCcccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeecccccc
Q psy1110 173 RNKNGEPTTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKR 252 (366)
Q Consensus 173 ~~~~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~ 252 (366)
T Consensus 85 -------------------------------------------------------------------------------- 84 (224)
T PTZ00443 85 -------------------------------------------------------------------------------- 84 (224)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCCccceeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhCCCCCC
Q psy1110 253 IKSINSGSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTEPP 325 (366)
Q Consensus 253 ~~p~~~~~~~~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~~~~~~ 325 (366)
+.++++|++++..++++|+|+++||+++|++|+.+..+.|.++.++|.+|+.+.....
T Consensus 85 ---------------v~~~~VD~~~~~~l~~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~~~ 142 (224)
T PTZ00443 85 ---------------VNVADLDATRALNLAKRFAIKGYPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFKKA 142 (224)
T ss_pred ---------------eEEEEecCcccHHHHHHcCCCcCCEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHHhh
Confidence 6788899999999999999999999999999998877789999999999998765433
No 18
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.75 E-value=8.4e-18 Score=136.01 Aligned_cols=101 Identities=50% Similarity=0.961 Sum_probs=91.3
Q ss_pred eEEecchhhhhhhccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCCccc
Q psy1110 101 VVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGEPT 180 (366)
Q Consensus 101 v~~l~~~~~~~~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~~~ 180 (366)
+..|++.+|+.+++.+++++|.||++||++|+++.|.++++++.+...
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~-------------------------------- 49 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKED-------------------------------- 49 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhC--------------------------------
Confidence 678899999999988899999999999999999999999999988643
Q ss_pred ccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCCCC
Q psy1110 181 THPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINSGS 260 (366)
Q Consensus 181 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~~~ 260 (366)
T Consensus 50 -------------------------------------------------------------------------------- 49 (104)
T cd02997 50 -------------------------------------------------------------------------------- 49 (104)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccceeEEEEeccc--ccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHH
Q psy1110 261 FSPRQITGILAAVDVTR--EKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFM 318 (366)
Q Consensus 261 ~~~~~~~v~~a~vd~~~--~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi 318 (366)
..+.++.+|++. +..++.+++|+++||+++|++|+.+.++.|..+.+.|++||
T Consensus 50 -----~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 50 -----GKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred -----CceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCCeeEEeCCCCCHHHHHhhC
Confidence 126778888887 88999999999999999999999899999999999999886
No 19
>PHA02278 thioredoxin-like protein
Probab=99.74 E-value=4.9e-18 Score=139.44 Aligned_cols=93 Identities=20% Similarity=0.295 Sum_probs=79.7
Q ss_pred chhhhhhhccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCCcccccCCC
Q psy1110 106 DDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGEPTTHPSG 185 (366)
Q Consensus 106 ~~~~~~~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~~~~~~~g 185 (366)
..+|.+.+.++++++|+|||+|||+|+.+.|.++++++.+...
T Consensus 4 ~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~------------------------------------- 46 (103)
T PHA02278 4 LVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIK------------------------------------- 46 (103)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCC-------------------------------------
Confidence 4678888888999999999999999999999999999876544
Q ss_pred CCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCCCCCCCCc
Q psy1110 186 TPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINSGSFSPRQ 265 (366)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~~~~~~~~ 265 (366)
T Consensus 47 -------------------------------------------------------------------------------- 46 (103)
T PHA02278 47 -------------------------------------------------------------------------------- 46 (103)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeEEEEecccc----cccccccccccCCeEEEecCCceeeecCCCCCHHHHHHH
Q psy1110 266 ITGILAAVDVTRE----KSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEF 317 (366)
Q Consensus 266 ~~v~~a~vd~~~~----~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~f 317 (366)
+.+.++|.+.+ ..++.+|+|.++|||++|++|+.+.+..|..+.+.|.++
T Consensus 47 --~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 47 --KPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred --ceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEEEEEeCCCCHHHHHhh
Confidence 34566666654 578899999999999999999999999999898887765
No 20
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.74 E-value=1.1e-17 Score=154.36 Aligned_cols=176 Identities=10% Similarity=0.133 Sum_probs=131.3
Q ss_pred cCCCCCCchHHHhhcCC-CCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeee-EeecCCccHHHHHHHHhCcCCc
Q psy1110 8 TLNKEDTSPLAKEIVKP-KAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVK-YVYENGNTKDKIIEFVRNPQAT 83 (366)
Q Consensus 8 ~~~~~~~~~la~e~~~~-~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~-~~y~g~r~~~~i~~fi~~~~~~ 83 (366)
|-.+....|+-+++++. +++.+..++++.....+++.+++|. ||+.+|++|... ..|.|..+.+.+.+|+.....-
T Consensus 34 C~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~~~~l~~~i~~~~~~ 113 (215)
T TIGR02187 34 CQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIPAGYEFAALIEDIVRV 113 (215)
T ss_pred CCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecCCHHHHHHHHHHHHHh
Confidence 33455556666666533 3455555555434566999999999 999999998876 4889988888899998765322
Q ss_pred chhhhccCCCcCCCCCceEEecchhhhhhhccCCeEEE-EEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCccc
Q psy1110 84 SEEVKKKEQDWADTESEVVHLTDDNFDLVIQEESSVLV-MFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQ 162 (366)
Q Consensus 84 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~k~vlV-~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~ 162 (366)
+ +....|+..+.+.+-..++++.| .||++||++|+.+.|.+++++... ..
T Consensus 114 ~--------------~~~~~L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~-~~-------------- 164 (215)
T TIGR02187 114 S--------------QGEPGLSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAN-DK-------------- 164 (215)
T ss_pred c--------------CCCCCCCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhc-Cc--------------
Confidence 1 01235555555555444555544 499999999999999999888763 23
Q ss_pred ccccceeeeeecCCCcccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcc
Q psy1110 163 ASNVAVVSSLRNKNGEPTTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGW 242 (366)
Q Consensus 163 ~~~~~v~~~l~~~~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 242 (366)
T Consensus 165 -------------------------------------------------------------------------------- 164 (215)
T TIGR02187 165 -------------------------------------------------------------------------------- 164 (215)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeeccccccccccCCCCCCCCccceeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhC
Q psy1110 243 ELRQVGTGKRIKSINSGSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRD 320 (366)
Q Consensus 243 ~~~~c~~c~~~~p~~~~~~~~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~ 320 (366)
+.+.++|...+..++.+|+|.++||++++++|.. +.|..+.++|.+||.+
T Consensus 165 -------------------------i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 165 -------------------------ILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAYPEEQFLEYILS 214 (215)
T ss_pred -------------------------eEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCCCHHHHHHHHHh
Confidence 6677899999999999999999999999988863 8898999999999975
No 21
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.73 E-value=1.1e-17 Score=134.18 Aligned_cols=52 Identities=19% Similarity=0.350 Sum_probs=48.5
Q ss_pred eeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHh
Q psy1110 268 GILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMR 319 (366)
Q Consensus 268 v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~ 319 (366)
+.++++|++.+..++++|+|+++||+++|++|+.+.++.|.++.++|.+||+
T Consensus 45 ~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 45 FVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPVDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred EEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEeeeecCCCCHHHHHHHhC
Confidence 6789999999999999999999999999999998899999999999999874
No 22
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.73 E-value=5.9e-18 Score=141.39 Aligned_cols=54 Identities=19% Similarity=0.414 Sum_probs=48.0
Q ss_pred eeEEEEec-----ccccccccccccc--cCCeEEEecCCc--eeeecCCC-CCHHHHHHHHhCC
Q psy1110 268 GILAAVDV-----TREKSLGKRFDIK--GFPTLKYFRAGS--VAFDAGHL-RDASRLVEFMRDP 321 (366)
Q Consensus 268 v~~a~vd~-----~~~~~l~~~~~I~--~~Ptl~~fk~G~--~~~~~~g~-~~~e~l~~fi~~~ 321 (366)
+.++++|| +++..||.+|+|+ +||||++|++|. ....|.|. |+.+.|++||+++
T Consensus 52 v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 52 LLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred eEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 67899999 5678999999999 999999999995 34689996 9999999999876
No 23
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.73 E-value=1.4e-17 Score=138.06 Aligned_cols=101 Identities=19% Similarity=0.392 Sum_probs=88.9
Q ss_pred Eecchhhhh-hhc--cCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCCcc
Q psy1110 103 HLTDDNFDL-VIQ--EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGEP 179 (366)
Q Consensus 103 ~l~~~~~~~-~i~--~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~~ 179 (366)
.++.++|++ ++. .+++++|+|||+||++|+.+.|.|+++++.+.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~------------------------------- 56 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPL------------------------------- 56 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhc-------------------------------
Confidence 457788875 443 5799999999999999999999999999998653
Q ss_pred cccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCCC
Q psy1110 180 TTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINSG 259 (366)
Q Consensus 180 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~~ 259 (366)
T Consensus 57 -------------------------------------------------------------------------------- 56 (111)
T cd02963 57 -------------------------------------------------------------------------------- 56 (111)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccceeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhCC
Q psy1110 260 SFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDP 321 (366)
Q Consensus 260 ~~~~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~~ 321 (366)
++.++++|++.+..++.+++|+++||+++|++|+.+.++.|.++.+.|.+||.+.
T Consensus 57 -------~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 57 -------GVGIATVNAGHERRLARKLGAHSVPAIVGIINGQVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred -------CceEEEEeccccHHHHHHcCCccCCEEEEEECCEEEEEecCCCCHHHHHHHHhcC
Confidence 1678899999899999999999999999999999888899999999999999763
No 24
>PTZ00102 disulphide isomerase; Provisional
Probab=99.73 E-value=2.4e-17 Score=168.20 Aligned_cols=111 Identities=42% Similarity=0.802 Sum_probs=102.0
Q ss_pred CCceEEecchhhhhhhccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCC
Q psy1110 98 ESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNG 177 (366)
Q Consensus 98 ~~~v~~l~~~~~~~~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G 177 (366)
.+.+..|+..+|+.++++++.++|.|||+||++|+++.|.|+++++.+...
T Consensus 31 ~~~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~----------------------------- 81 (477)
T PTZ00102 31 SEHVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEK----------------------------- 81 (477)
T ss_pred CCCcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhc-----------------------------
Confidence 357899999999999988999999999999999999999999999888654
Q ss_pred cccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccC
Q psy1110 178 EPTTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSIN 257 (366)
Q Consensus 178 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~ 257 (366)
T Consensus 82 -------------------------------------------------------------------------------- 81 (477)
T PTZ00102 82 -------------------------------------------------------------------------------- 81 (477)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccceeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhCCCCCC
Q psy1110 258 SGSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTEPP 325 (366)
Q Consensus 258 ~~~~~~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~~~~~~ 325 (366)
..++.++++||+.+..+|++|+|+++||+++|++|+.+ +|.|.++.+.|++|+.+.++|.
T Consensus 82 -------~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~-~y~g~~~~~~l~~~l~~~~~~~ 141 (477)
T PTZ00102 82 -------KSEIVLASVDATEEMELAQEFGVRGYPTIKFFNKGNPV-NYSGGRTADGIVSWIKKLTGPA 141 (477)
T ss_pred -------CCcEEEEEEECCCCHHHHHhcCCCcccEEEEEECCceE-EecCCCCHHHHHHHHHHhhCCC
Confidence 13488999999999999999999999999999999866 9999999999999999999877
No 25
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.73 E-value=1.9e-17 Score=133.79 Aligned_cols=99 Identities=43% Similarity=0.744 Sum_probs=88.9
Q ss_pred eEEecchhhhhhhcc-CCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCCcc
Q psy1110 101 VVHLTDDNFDLVIQE-ESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGEP 179 (366)
Q Consensus 101 v~~l~~~~~~~~i~~-~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~~ 179 (366)
+..+++++|++.+.+ +++++|+||++||++|+.+.|.|.++++++.+.
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~------------------------------- 50 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI------------------------------- 50 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-------------------------------
Confidence 678899999988744 566999999999999999999999999988655
Q ss_pred cccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCCC
Q psy1110 180 TTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINSG 259 (366)
Q Consensus 180 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~~ 259 (366)
T Consensus 51 -------------------------------------------------------------------------------- 50 (103)
T cd03001 51 -------------------------------------------------------------------------------- 50 (103)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccceeEEEEecccccccccccccccCCeEEEecCC-ceeeecCCCCCHHHHHHHH
Q psy1110 260 SFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAG-SVAFDAGHLRDASRLVEFM 318 (366)
Q Consensus 260 ~~~~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G-~~~~~~~g~~~~e~l~~fi 318 (366)
+.++.+|++.+..++++++|+++||+++|++| +....|.|.++.++|.+|+
T Consensus 51 --------~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 51 --------VKVGAVDADVHQSLAQQYGVRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred --------ceEEEEECcchHHHHHHCCCCccCEEEEECCCCcceeecCCCCCHHHHHHHh
Confidence 67888999999999999999999999999999 5567899999999999997
No 26
>PRK09381 trxA thioredoxin; Provisional
Probab=99.72 E-value=3.1e-17 Score=134.81 Aligned_cols=105 Identities=31% Similarity=0.640 Sum_probs=94.5
Q ss_pred CceEEecchhhhh-hhccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCC
Q psy1110 99 SEVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNG 177 (366)
Q Consensus 99 ~~v~~l~~~~~~~-~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G 177 (366)
..++.+++++|++ +++.+++++|+||++||++|+.+.|.|+++++.+.+.
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~----------------------------- 53 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK----------------------------- 53 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC-----------------------------
Confidence 3688999999986 5567899999999999999999999999999988665
Q ss_pred cccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccC
Q psy1110 178 EPTTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSIN 257 (366)
Q Consensus 178 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~ 257 (366)
T Consensus 54 -------------------------------------------------------------------------------- 53 (109)
T PRK09381 54 -------------------------------------------------------------------------------- 53 (109)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccceeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhCCC
Q psy1110 258 SGSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPT 322 (366)
Q Consensus 258 ~~~~~~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~~~ 322 (366)
+.++.+|++....++.+|+|+++||+++|++|+.+.++.|..+.+.|.+||...+
T Consensus 54 ----------~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 54 ----------LTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred ----------cEEEEEECCCChhHHHhCCCCcCCEEEEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 6688888888889999999999999999999999999999999999999998654
No 27
>PRK10996 thioredoxin 2; Provisional
Probab=99.72 E-value=2.4e-17 Score=142.25 Aligned_cols=105 Identities=27% Similarity=0.589 Sum_probs=96.1
Q ss_pred CCceEEecchhhhhhhccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCC
Q psy1110 98 ESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNG 177 (366)
Q Consensus 98 ~~~v~~l~~~~~~~~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G 177 (366)
++.+..++..+|+.+++++++++|+||++||++|+.+.|.++++++.+.+.
T Consensus 34 ~~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~----------------------------- 84 (139)
T PRK10996 34 DGEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK----------------------------- 84 (139)
T ss_pred CCCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC-----------------------------
Confidence 456778999999999988999999999999999999999999999887655
Q ss_pred cccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccC
Q psy1110 178 EPTTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSIN 257 (366)
Q Consensus 178 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~ 257 (366)
T Consensus 85 -------------------------------------------------------------------------------- 84 (139)
T PRK10996 85 -------------------------------------------------------------------------------- 84 (139)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccceeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhCC
Q psy1110 258 SGSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDP 321 (366)
Q Consensus 258 ~~~~~~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~~ 321 (366)
+.++++|++.+..++++|+|+++||+++|++|+.+.++.|..+.+.|.+|++++
T Consensus 85 ----------v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 85 ----------VRFVKVNTEAERELSARFRIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred ----------eEEEEEeCCCCHHHHHhcCCCccCEEEEEECCEEEEEEcCCCCHHHHHHHHHHh
Confidence 678888998899999999999999999999999999999999999999999865
No 28
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.71 E-value=3e-17 Score=131.92 Aligned_cols=102 Identities=47% Similarity=0.839 Sum_probs=92.0
Q ss_pred ecchhhhhhhccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCCcccccC
Q psy1110 104 LTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGEPTTHP 183 (366)
Q Consensus 104 l~~~~~~~~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~~~~~~ 183 (366)
|++++|+.++.++++++|+||++||++|+.+.|.|+++++.+++.
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~----------------------------------- 45 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGD----------------------------------- 45 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccC-----------------------------------
Confidence 577899999888999999999999999999999999999988663
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCCCCCCC
Q psy1110 184 SGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINSGSFSP 263 (366)
Q Consensus 184 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~~~~~~ 263 (366)
T Consensus 46 -------------------------------------------------------------------------------- 45 (102)
T TIGR01126 46 -------------------------------------------------------------------------------- 45 (102)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccceeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhCCC
Q psy1110 264 RQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPT 322 (366)
Q Consensus 264 ~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~~~ 322 (366)
.++.++.+|++.+..++++|+|+++|++++|++|+....|.|.++.+.|..||++++
T Consensus 46 --~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 46 --PDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKGKKPVDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred --CceEEEEEEccchHHHHHhCCCCcCCEEEEecCCCcceeecCCCCHHHHHHHHHhcC
Confidence 127889999999999999999999999999998887889999999999999998753
No 29
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.71 E-value=2.4e-17 Score=134.36 Aligned_cols=49 Identities=24% Similarity=0.362 Sum_probs=43.3
Q ss_pred eEEEEecc-cccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHH
Q psy1110 269 ILAAVDVT-REKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFM 318 (366)
Q Consensus 269 ~~a~vd~~-~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi 318 (366)
.++.+|.+ .+..++++|+|+++||+++|++| .+.++.|.++.+.|.+|+
T Consensus 51 ~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 51 RHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRTLDSLAAFY 100 (100)
T ss_pred ceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCCHHHHHhhC
Confidence 35667777 67889999999999999999999 788999999999999986
No 30
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.71 E-value=4.3e-17 Score=131.64 Aligned_cols=100 Identities=39% Similarity=0.732 Sum_probs=88.2
Q ss_pred eEEecchhhhhhhcc-CCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCCcc
Q psy1110 101 VVHLTDDNFDLVIQE-ESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGEP 179 (366)
Q Consensus 101 v~~l~~~~~~~~i~~-~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~~ 179 (366)
|..|+..+|++.+.+ +++++|+||++||++|+.+.|.|+++++.+++.
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~------------------------------- 50 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD------------------------------- 50 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC-------------------------------
Confidence 678999999998744 689999999999999999999999999988663
Q ss_pred cccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCCC
Q psy1110 180 TTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINSG 259 (366)
Q Consensus 180 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~~ 259 (366)
T Consensus 51 -------------------------------------------------------------------------------- 50 (104)
T cd02995 51 -------------------------------------------------------------------------------- 50 (104)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccceeEEEEecccccccccccccccCCeEEEecCCc--eeeecCCCCCHHHHHHHH
Q psy1110 260 SFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGS--VAFDAGHLRDASRLVEFM 318 (366)
Q Consensus 260 ~~~~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~--~~~~~~g~~~~e~l~~fi 318 (366)
.++.++++|++.+ .++..+++.++||+++|++|+ ...+|.|.++.+.|.+||
T Consensus 51 ------~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 51 ------DNVVIAKMDATAN-DVPSEFVVDGFPTILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred ------CCEEEEEEeCcch-hhhhhccCCCCCEEEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 1278899999887 578889999999999999887 567899999999999986
No 31
>KOG4277|consensus
Probab=99.71 E-value=1.7e-17 Score=155.91 Aligned_cols=83 Identities=22% Similarity=0.428 Sum_probs=70.2
Q ss_pred cceeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhCCCCCCCCCCCCCCCCCCCCeeEEec
Q psy1110 266 ITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTEPPPPPPPEPAWAEEPSEVYHLG 345 (366)
Q Consensus 266 ~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~~~~~~~~~~~~~~~~~~~~~v~~lt 345 (366)
..+++.++||+....++.+++|+||||+.+||+|- .+.|.|.|+.++|++|.++...+. |..++
T Consensus 77 ~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~-a~dYRG~R~Kd~iieFAhR~a~ai---------------I~pi~ 140 (468)
T KOG4277|consen 77 LPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDH-AIDYRGGREKDAIIEFAHRCAAAI---------------IEPIN 140 (468)
T ss_pred CceeecccccccchhhHhhhccCCCceEEEecCCe-eeecCCCccHHHHHHHHHhcccce---------------eeecC
Confidence 34899999999999999999999999999998777 889999999999999999999888 77777
Q ss_pred hh--cHHHHhhccCceEEEEe
Q psy1110 346 AD--NFASTLRKKKHALVMFY 364 (366)
Q Consensus 346 ~~--~~~~~~~~~~~~~v~fy 364 (366)
.. .|..+-..+.+.+|+|=
T Consensus 141 enQ~~fehlq~Rhq~ffVf~G 161 (468)
T KOG4277|consen 141 ENQIEFEHLQARHQPFFVFFG 161 (468)
T ss_pred hhHHHHHHHhhccCceEEEEe
Confidence 63 35555555567777663
No 32
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.71 E-value=4.5e-17 Score=134.41 Aligned_cols=101 Identities=27% Similarity=0.573 Sum_probs=86.4
Q ss_pred ceEEecchhhhhhhc---cCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCC
Q psy1110 100 EVVHLTDDNFDLVIQ---EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKN 176 (366)
Q Consensus 100 ~v~~l~~~~~~~~i~---~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~ 176 (366)
.|+.|+.++|+.++. ++++++|.||++||++|+.+.|.|+++++.+++.
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~---------------------------- 53 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGS---------------------------- 53 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccC----------------------------
Confidence 578999999999873 5799999999999999999999999999988753
Q ss_pred CcccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeecccccccccc
Q psy1110 177 GEPTTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSI 256 (366)
Q Consensus 177 G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~ 256 (366)
T Consensus 54 -------------------------------------------------------------------------------- 53 (109)
T cd02993 54 -------------------------------------------------------------------------------- 53 (109)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCccceeEEEEeccc-cccccc-ccccccCCeEEEecCC-ceeeecCCC-CCHHHHHHHH
Q psy1110 257 NSGSFSPRQITGILAAVDVTR-EKSLGK-RFDIKGFPTLKYFRAG-SVAFDAGHL-RDASRLVEFM 318 (366)
Q Consensus 257 ~~~~~~~~~~~v~~a~vd~~~-~~~l~~-~~~I~~~Ptl~~fk~G-~~~~~~~g~-~~~e~l~~fi 318 (366)
++.++.+|++. +..++. .++|+++||+++|++| .....|.|. |+.++|+.||
T Consensus 54 ----------~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 54 ----------NVKVAKFNADGEQREFAKEELQLKSFPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred ----------CeEEEEEECCccchhhHHhhcCCCcCCEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 16778888887 567776 5999999999999776 457889984 8999999986
No 33
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.71 E-value=1.8e-17 Score=137.99 Aligned_cols=89 Identities=17% Similarity=0.246 Sum_probs=78.5
Q ss_pred chhhhhhhc--cCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCCcccccC
Q psy1110 106 DDNFDLVIQ--EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGEPTTHP 183 (366)
Q Consensus 106 ~~~~~~~i~--~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~~~~~~ 183 (366)
.++|+..+. ++++++|+|||+||++|+.+.|.+++++.++.+.
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~----------------------------------- 46 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF----------------------------------- 46 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-----------------------------------
Confidence 456777775 5789999999999999999999999999998765
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCCCCCCC
Q psy1110 184 SGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINSGSFSP 263 (366)
Q Consensus 184 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~~~~~~ 263 (366)
T Consensus 47 -------------------------------------------------------------------------------- 46 (114)
T cd02954 47 -------------------------------------------------------------------------------- 46 (114)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccceeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHH
Q psy1110 264 RQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASR 313 (366)
Q Consensus 264 ~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~ 313 (366)
+.++++|.+++..++.+|+|+++||+++|++|+.+.+..|..+..+
T Consensus 47 ----v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~~v~~~~G~~~~~~ 92 (114)
T cd02954 47 ----AVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNKHMKIDLGTGNNNK 92 (114)
T ss_pred ----eEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEEEEcCCCCCce
Confidence 6788999999999999999999999999999999988888766443
No 34
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.71 E-value=3.9e-17 Score=133.62 Aligned_cols=95 Identities=15% Similarity=0.250 Sum_probs=78.3
Q ss_pred cchhhhhhhcc--CCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCCccccc
Q psy1110 105 TDDNFDLVIQE--ESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGEPTTH 182 (366)
Q Consensus 105 ~~~~~~~~i~~--~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~~~~~ 182 (366)
+.++|++++.+ +++++|+|||+||++|+.+.|.++++++.+ ..
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~---------------------------------- 46 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-ND---------------------------------- 46 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CC----------------------------------
Confidence 35678887743 899999999999999999999999999988 44
Q ss_pred CCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCCCCCC
Q psy1110 183 PSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINSGSFS 262 (366)
Q Consensus 183 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~~~~~ 262 (366)
T Consensus 47 -------------------------------------------------------------------------------- 46 (103)
T cd02985 47 -------------------------------------------------------------------------------- 46 (103)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccceeEEEEeccccc---ccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhC
Q psy1110 263 PRQITGILAAVDVTREK---SLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRD 320 (366)
Q Consensus 263 ~~~~~v~~a~vd~~~~~---~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~ 320 (366)
+.++++|++++. .++++|+|+++||+++|++|+.+.++.|. +.++|.+-+..
T Consensus 47 -----v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~v~~~~G~-~~~~l~~~~~~ 101 (103)
T cd02985 47 -----VVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEKIHEEEGI-GPDELIGDVLY 101 (103)
T ss_pred -----CEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeEEEEEeCC-CHHHHHHHHHh
Confidence 456666666553 78899999999999999999999999995 56777766543
No 35
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.70 E-value=5.7e-17 Score=132.33 Aligned_cols=97 Identities=16% Similarity=0.349 Sum_probs=85.3
Q ss_pred ecchhhhhhhccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCCcccccC
Q psy1110 104 LTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGEPTTHP 183 (366)
Q Consensus 104 l~~~~~~~~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~~~~~~ 183 (366)
-+.++|+.+++++++++|+|||+||++|+.+.|.++++++.+.+.
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~----------------------------------- 49 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDD----------------------------------- 49 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCC-----------------------------------
Confidence 467889999988999999999999999999999999999888643
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCCCCCCC
Q psy1110 184 SGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINSGSFSP 263 (366)
Q Consensus 184 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~~~~~~ 263 (366)
T Consensus 50 -------------------------------------------------------------------------------- 49 (102)
T cd02948 50 -------------------------------------------------------------------------------- 49 (102)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccceeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhC
Q psy1110 264 RQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRD 320 (366)
Q Consensus 264 ~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~ 320 (366)
.+.++.+|.+ ..+++++|+|+++||+++|++|+.+.+..|. +.+.|.++|.+
T Consensus 50 ---~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~-~~~~~~~~i~~ 101 (102)
T cd02948 50 ---LLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNGELVAVIRGA-NAPLLNKTITE 101 (102)
T ss_pred ---cEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECCEEEEEEecC-ChHHHHHHHhh
Confidence 1567888887 6678999999999999999999999999885 88999998875
No 36
>KOG0191|consensus
Probab=99.69 E-value=8.1e-17 Score=160.94 Aligned_cols=141 Identities=44% Similarity=0.759 Sum_probs=118.9
Q ss_pred ceEEecchhh-hhhhccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCCc
Q psy1110 100 EVVHLTDDNF-DLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGE 178 (366)
Q Consensus 100 ~v~~l~~~~~-~~~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~ 178 (366)
....++..++ +.++..+++++|.||+|||+||+++.|+|+++++.+++.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~------------------------------ 79 (383)
T KOG0191|consen 30 VVSELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK------------------------------ 79 (383)
T ss_pred chhhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCc------------------------------
Confidence 3344444444 456677999999999999999999999999999998776
Q ss_pred ccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCC
Q psy1110 179 PTTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINS 258 (366)
Q Consensus 179 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~ 258 (366)
T Consensus 80 -------------------------------------------------------------------------------- 79 (383)
T KOG0191|consen 80 -------------------------------------------------------------------------------- 79 (383)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccceeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q psy1110 259 GSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTEPPPPPPPEPAWAEEP 338 (366)
Q Consensus 259 ~~~~~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~~~~~~~~~~~~~~~~~~~ 338 (366)
+.++.+||+.+..+|..|+|++|||+.+|+.|.....|.|.++.+.+.+|+...+.+........
T Consensus 80 ---------~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 144 (383)
T KOG0191|consen 80 ---------VKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPIDYSGPRNAESLAEFLIKELEPSVKKLVEG------ 144 (383)
T ss_pred ---------eEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCceeeccCcccHHHHHHHHHHhhccccccccCC------
Confidence 78999999999999999999999999999999667899999999999999999988764332222
Q ss_pred CeeEEechhcHHHHhhc-cCceEEEEecC
Q psy1110 339 SEVYHLGADNFASTLRK-KKHALVMFYAP 366 (366)
Q Consensus 339 ~~v~~lt~~~~~~~~~~-~~~~~v~fy~~ 366 (366)
++.+++.++|..+... ++.++|+||+|
T Consensus 145 -~v~~l~~~~~~~~~~~~~~~~lv~f~aP 172 (383)
T KOG0191|consen 145 -EVFELTKDNFDETVKDSDADWLVEFYAP 172 (383)
T ss_pred -ceEEccccchhhhhhccCcceEEEEecc
Confidence 5999999999987654 55899999998
No 37
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=5.1e-17 Score=153.64 Aligned_cols=107 Identities=31% Similarity=0.539 Sum_probs=98.7
Q ss_pred CceEEecchhhhhhh--cc-CCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecC
Q psy1110 99 SEVVHLTDDNFDLVI--QE-ESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNK 175 (366)
Q Consensus 99 ~~v~~l~~~~~~~~i--~~-~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~ 175 (366)
..|.++|+.||.+.+ .+ .+||+|+||+|||++|+.+.|.+++++..|++.
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~--------------------------- 75 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK--------------------------- 75 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc---------------------------
Confidence 359999999999755 23 569999999999999999999999999999888
Q ss_pred CCcccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccc
Q psy1110 176 NGEPTTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKS 255 (366)
Q Consensus 176 ~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p 255 (366)
T Consensus 76 -------------------------------------------------------------------------------- 75 (304)
T COG3118 76 -------------------------------------------------------------------------------- 75 (304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCccceeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhCCCCC
Q psy1110 256 INSGSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTEP 324 (366)
Q Consensus 256 ~~~~~~~~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~~~~~ 324 (366)
+++++|||+....+...|+|+.+||++.|++|+.+--+.|....+.|.+|+.++..+
T Consensus 76 ------------f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 76 ------------FKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred ------------eEEEEecCCcchhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 789999999999999999999999999999999999999999999999999998865
No 38
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.69 E-value=1.3e-16 Score=128.89 Aligned_cols=101 Identities=48% Similarity=0.866 Sum_probs=89.2
Q ss_pred eEEecchhhhhhhcc-CCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCCcc
Q psy1110 101 VVHLTDDNFDLVIQE-ESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGEP 179 (366)
Q Consensus 101 v~~l~~~~~~~~i~~-~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~~ 179 (366)
+..|++++|+..+.+ +++++|.||++||++|+.+.|.|+++++.+...
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~------------------------------- 50 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANE------------------------------- 50 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCC-------------------------------
Confidence 578899999998864 569999999999999999999999999988632
Q ss_pred cccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCCC
Q psy1110 180 TTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINSG 259 (366)
Q Consensus 180 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~~ 259 (366)
T Consensus 51 -------------------------------------------------------------------------------- 50 (105)
T cd02998 51 -------------------------------------------------------------------------------- 50 (105)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccceeEEEEeccc-ccccccccccccCCeEEEecCC-ceeeecCCCCCHHHHHHHH
Q psy1110 260 SFSPRQITGILAAVDVTR-EKSLGKRFDIKGFPTLKYFRAG-SVAFDAGHLRDASRLVEFM 318 (366)
Q Consensus 260 ~~~~~~~~v~~a~vd~~~-~~~l~~~~~I~~~Ptl~~fk~G-~~~~~~~g~~~~e~l~~fi 318 (366)
.++.++.+|+.. +..++++++|+++||+++|++| +....|.|.++.++|.+||
T Consensus 51 ------~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 51 ------DDVVIAKVDADEANKDLAKKYGVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred ------CCEEEEEEECCCcchhhHHhCCCCCcCEEEEEeCCCCCccccCCccCHHHHHhhC
Confidence 227889999999 8999999999999999999877 6678899999999999986
No 39
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.67 E-value=2.2e-16 Score=128.98 Aligned_cols=97 Identities=36% Similarity=0.674 Sum_probs=83.5
Q ss_pred hhhhhhhccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCCcccccCCCC
Q psy1110 107 DNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGEPTTHPSGT 186 (366)
Q Consensus 107 ~~~~~~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~~~~~~~g~ 186 (366)
++|+++. +++.++|.|||+||++|+.+.|.|+++++.+++.
T Consensus 7 ~~~~~~~-~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~-------------------------------------- 47 (104)
T cd03000 7 DSFKDVR-KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSS-------------------------------------- 47 (104)
T ss_pred hhhhhhc-cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhc--------------------------------------
Confidence 6677754 4679999999999999999999999999988654
Q ss_pred CCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCCCCCCCCcc
Q psy1110 187 PQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINSGSFSPRQI 266 (366)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~~~~~~~~~ 266 (366)
+.
T Consensus 48 ------------------------------------------------------------------------------~~ 49 (104)
T cd03000 48 ------------------------------------------------------------------------------GS 49 (104)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 11
Q ss_pred ceeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhCC
Q psy1110 267 TGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDP 321 (366)
Q Consensus 267 ~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~~ 321 (366)
++.++.+|++....++++|+|+++||+++|++|. ..++.|.++.+.|.+|+++.
T Consensus 50 ~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~-~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 50 PVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDL-AYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred cEEEEEEECccCHhHHhhcCCccccEEEEEcCCC-ceeecCCCCHHHHHHHHHhh
Confidence 2778899999999999999999999999998774 67899999999999999864
No 40
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.66 E-value=2.3e-16 Score=130.68 Aligned_cols=97 Identities=16% Similarity=0.171 Sum_probs=89.7
Q ss_pred ceEEecchhhhhhhccCCeEEEEEECCC--ChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCC
Q psy1110 100 EVVHLTDDNFDLVIQEESSVLVMFYAPW--CGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNG 177 (366)
Q Consensus 100 ~v~~l~~~~~~~~i~~~k~vlV~F~a~w--C~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G 177 (366)
....++..||++.++.++.++|.|||+| |++|..+.|.+++++++|.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~----------------------------- 61 (111)
T cd02965 11 GWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR----------------------------- 61 (111)
T ss_pred CCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-----------------------------
Confidence 4678999999999988999999999997 999999999999999999876
Q ss_pred cccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccC
Q psy1110 178 EPTTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSIN 257 (366)
Q Consensus 178 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~ 257 (366)
T Consensus 62 -------------------------------------------------------------------------------- 61 (111)
T cd02965 62 -------------------------------------------------------------------------------- 61 (111)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccceeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHH
Q psy1110 258 SGSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLV 315 (366)
Q Consensus 258 ~~~~~~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~ 315 (366)
+.++++|++++..++.+|+|+++|||++|++|+.+.+..|..+.+++.
T Consensus 62 ----------v~f~kVdid~~~~la~~f~V~sIPTli~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 62 ----------FRAAVVGRADEQALAARFGVLRTPALLFFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred ----------EEEEEEECCCCHHHHHHcCCCcCCEEEEEECCEEEEEEeCccCHHHHh
Confidence 678899999999999999999999999999999999999998887764
No 41
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.65 E-value=3.7e-16 Score=124.08 Aligned_cols=99 Identities=43% Similarity=0.810 Sum_probs=88.4
Q ss_pred EecchhhhhhhccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCCccccc
Q psy1110 103 HLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGEPTTH 182 (366)
Q Consensus 103 ~l~~~~~~~~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~~~~~ 182 (366)
.|+..+|.+.+.++++++|.||++||++|+.+.|.|+++++.+...
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---------------------------------- 47 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGD---------------------------------- 47 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccC----------------------------------
Confidence 5778899999988889999999999999999999999999988421
Q ss_pred CCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCCCCCC
Q psy1110 183 PSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINSGSFS 262 (366)
Q Consensus 183 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~~~~~ 262 (366)
T Consensus 48 -------------------------------------------------------------------------------- 47 (101)
T cd02961 48 -------------------------------------------------------------------------------- 47 (101)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccceeEEEEecccccccccccccccCCeEEEecCC-ceeeecCCCCCHHHHHHHH
Q psy1110 263 PRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAG-SVAFDAGHLRDASRLVEFM 318 (366)
Q Consensus 263 ~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G-~~~~~~~g~~~~e~l~~fi 318 (366)
.++.++.+|++.+..++++|+|+++||+++|++| +...+|.|.++.++|.+|+
T Consensus 48 ---~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 48 ---GKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred ---CceEEEEeeccchHHHHHhCCCCCCCEEEEEcCCCcccccCCCCcCHHHHHhhC
Confidence 1278999999999999999999999999999888 7789999999999998885
No 42
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.64 E-value=9.9e-16 Score=122.49 Aligned_cols=99 Identities=30% Similarity=0.563 Sum_probs=87.8
Q ss_pred ecchhhhhhhcc-CCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCCccccc
Q psy1110 104 LTDDNFDLVIQE-ESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGEPTTH 182 (366)
Q Consensus 104 l~~~~~~~~i~~-~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~~~~~ 182 (366)
++.++|.+.+.+ +++++|.||++||++|+.+.|.++++++.+.+.
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~---------------------------------- 46 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK---------------------------------- 46 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC----------------------------------
Confidence 356778877755 569999999999999999999999999888655
Q ss_pred CCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCCCCCC
Q psy1110 183 PSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINSGSFS 262 (366)
Q Consensus 183 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~~~~~ 262 (366)
T Consensus 47 -------------------------------------------------------------------------------- 46 (101)
T TIGR01068 47 -------------------------------------------------------------------------------- 46 (101)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccceeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhCC
Q psy1110 263 PRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDP 321 (366)
Q Consensus 263 ~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~~ 321 (366)
+.++.+|++.+..++++|+|.++||+++|++|+.+..+.|.++.+.|.+||++.
T Consensus 47 -----~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 47 -----VKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGKEVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred -----eEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCcEeeeecCCCCHHHHHHHHHhh
Confidence 678889999899999999999999999999999888999999999999999864
No 43
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.62 E-value=1.1e-15 Score=124.66 Aligned_cols=94 Identities=24% Similarity=0.391 Sum_probs=79.7
Q ss_pred hhhhhhhccCCeEEEEEECCCChhhhcccHHH---HHHHHHHhccccEEEeeccCCcccccccceeeeeecCCCcccccC
Q psy1110 107 DNFDLVIQEESSVLVMFYAPWCGHCKKLKPEY---EEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGEPTTHP 183 (366)
Q Consensus 107 ~~~~~~i~~~k~vlV~F~a~wC~~Ck~~~p~~---e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~~~~~~ 183 (366)
+.|++.++++++++|+||++||++|+.+.|.+ +++++.+.+.
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~----------------------------------- 46 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKD----------------------------------- 46 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCC-----------------------------------
Confidence 46778888999999999999999999999988 6788777655
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCCCCCCC
Q psy1110 184 SGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINSGSFSP 263 (366)
Q Consensus 184 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~~~~~~ 263 (366)
T Consensus 47 -------------------------------------------------------------------------------- 46 (104)
T cd02953 47 -------------------------------------------------------------------------------- 46 (104)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccceeEEEEeccc----ccccccccccccCCeEEEec--CCceeeecCCCCCHHHHHHHHh
Q psy1110 264 RQITGILAAVDVTR----EKSLGKRFDIKGFPTLKYFR--AGSVAFDAGHLRDASRLVEFMR 319 (366)
Q Consensus 264 ~~~~v~~a~vd~~~----~~~l~~~~~I~~~Ptl~~fk--~G~~~~~~~g~~~~e~l~~fi~ 319 (366)
+.++.+|+++ ...++++|+|+++||+++|+ +|+.+.++.|.++.+.|.++|+
T Consensus 47 ----~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 47 ----VVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred ----eEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCCCCCCCcccccccCHHHHHHHhC
Confidence 4555566554 45788899999999999998 7998999999999999998874
No 44
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.62 E-value=1.6e-15 Score=131.47 Aligned_cols=102 Identities=19% Similarity=0.369 Sum_probs=82.6
Q ss_pred hhhhhhhccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCCcccccCCCC
Q psy1110 107 DNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGEPTTHPSGT 186 (366)
Q Consensus 107 ~~~~~~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~~~~~~~g~ 186 (366)
..|+..+..+++++|+|||+||++|+.+.|.++++++.|.+.+.|+.++
T Consensus 11 ~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~------------------------------- 59 (142)
T cd02950 11 TPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLN------------------------------- 59 (142)
T ss_pred CCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEE-------------------------------
Confidence 4567777889999999999999999999999999999987663333333
Q ss_pred CCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCCCCCCCCcc
Q psy1110 187 PQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINSGSFSPRQI 266 (366)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~~~~~~~~~ 266 (366)
T Consensus 60 -------------------------------------------------------------------------------- 59 (142)
T cd02950 60 -------------------------------------------------------------------------------- 59 (142)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeEEEEecccccccccccccccCCeEEEe-cCCceeeecCCCCCHHHHHHHHhCCCCCC
Q psy1110 267 TGILAAVDVTREKSLGKRFDIKGFPTLKYF-RAGSVAFDAGHLRDASRLVEFMRDPTEPP 325 (366)
Q Consensus 267 ~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~f-k~G~~~~~~~g~~~~e~l~~fi~~~~~~~ 325 (366)
+|......++.+|+|+++||+++| ++|+++.++.|..+.+.|.++|.....-.
T Consensus 60 ------vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 60 ------VDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred ------cCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 222233467789999999999999 58999999999999999998888766544
No 45
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.62 E-value=1.6e-15 Score=132.91 Aligned_cols=52 Identities=15% Similarity=0.393 Sum_probs=45.4
Q ss_pred CCCCceEEecchhhhhhhcc--CCeEEEEEECCCChhhhcccHHHHHHHHHHhc
Q psy1110 96 DTESEVVHLTDDNFDLVIQE--ESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQ 147 (366)
Q Consensus 96 ~~~~~v~~l~~~~~~~~i~~--~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~ 147 (366)
..++.+..++.++|++.+.. +++++|+|||+||++|+.+.|.|+++++.+.+
T Consensus 25 ~~~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~ 78 (152)
T cd02962 25 MGPEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN 78 (152)
T ss_pred CCCCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc
Confidence 33568899999999998743 57899999999999999999999999998864
No 46
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.62 E-value=2e-15 Score=120.94 Aligned_cols=94 Identities=20% Similarity=0.542 Sum_probs=81.5
Q ss_pred cchhhhhhhccC--CeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCCccccc
Q psy1110 105 TDDNFDLVIQEE--SSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGEPTTH 182 (366)
Q Consensus 105 ~~~~~~~~i~~~--k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~~~~~ 182 (366)
+.++|++++.+. ++++|.||++||++|+.+.|.++++++.+...
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~---------------------------------- 46 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPS---------------------------------- 46 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCc----------------------------------
Confidence 356788888665 99999999999999999999999999887333
Q ss_pred CCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCCCCCC
Q psy1110 183 PSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINSGSFS 262 (366)
Q Consensus 183 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~~~~~ 262 (366)
T Consensus 47 -------------------------------------------------------------------------------- 46 (97)
T cd02984 47 -------------------------------------------------------------------------------- 46 (97)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccceeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHH
Q psy1110 263 PRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFM 318 (366)
Q Consensus 263 ~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi 318 (366)
+.++++|++....++++|+|+++||+++|++|+.+.+..|. +.++|.+.|
T Consensus 47 -----i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 47 -----VLFLSIEAEELPEISEKFEITAVPTFVFFRNGTIVDRVSGA-DPKELAKKV 96 (97)
T ss_pred -----eEEEEEccccCHHHHHhcCCccccEEEEEECCEEEEEEeCC-CHHHHHHhh
Confidence 77888999888999999999999999999999988888885 677777665
No 47
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.61 E-value=1.1e-15 Score=126.97 Aligned_cols=90 Identities=26% Similarity=0.395 Sum_probs=79.1
Q ss_pred CceEEecchhhhhhhccC---CeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecC
Q psy1110 99 SEVVHLTDDNFDLVIQEE---SSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNK 175 (366)
Q Consensus 99 ~~v~~l~~~~~~~~i~~~---k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~ 175 (366)
+.+..+++++|.+.+... ++++|+||++||++|+.+.|.+++++..+.+
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~---------------------------- 55 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE---------------------------- 55 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC----------------------------
Confidence 467889999999887544 8999999999999999999999999988742
Q ss_pred CCcccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccc
Q psy1110 176 NGEPTTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKS 255 (366)
Q Consensus 176 ~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p 255 (366)
T Consensus 56 -------------------------------------------------------------------------------- 55 (113)
T cd02957 56 -------------------------------------------------------------------------------- 55 (113)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCccceeEEEEecccccccccccccccCCeEEEecCCceeeecCCCC
Q psy1110 256 INSGSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLR 309 (366)
Q Consensus 256 ~~~~~~~~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~ 309 (366)
+.++++|++++ .++++|+|+++||+++|++|+.+.+..|..
T Consensus 56 ------------v~f~~vd~~~~-~l~~~~~i~~~Pt~~~f~~G~~v~~~~G~~ 96 (113)
T cd02957 56 ------------TKFVKINAEKA-FLVNYLDIKVLPTLLVYKNGELIDNIVGFE 96 (113)
T ss_pred ------------cEEEEEEchhh-HHHHhcCCCcCCEEEEEECCEEEEEEecHH
Confidence 56788999888 999999999999999999999998887743
No 48
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.60 E-value=2.4e-15 Score=125.32 Aligned_cols=90 Identities=20% Similarity=0.307 Sum_probs=80.6
Q ss_pred CceEEecc-hhhhhhhccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCC
Q psy1110 99 SEVVHLTD-DNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNG 177 (366)
Q Consensus 99 ~~v~~l~~-~~~~~~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G 177 (366)
+.+..+++ ++|.+.+.+++.++|+||++||++|+.+.|.++++++++. +
T Consensus 4 g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-~----------------------------- 53 (113)
T cd02989 4 GKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL-E----------------------------- 53 (113)
T ss_pred CCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC-C-----------------------------
Confidence 46778888 8999999888999999999999999999999999998763 2
Q ss_pred cccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccC
Q psy1110 178 EPTTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSIN 257 (366)
Q Consensus 178 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~ 257 (366)
T Consensus 54 -------------------------------------------------------------------------------- 53 (113)
T cd02989 54 -------------------------------------------------------------------------------- 53 (113)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccceeEEEEecccccccccccccccCCeEEEecCCceeeecCCC
Q psy1110 258 SGSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHL 308 (366)
Q Consensus 258 ~~~~~~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~ 308 (366)
+.++++|.+++..+.++|+|+++||+++|++|+.+.+..|.
T Consensus 54 ----------i~f~~Vd~~~~~~l~~~~~v~~vPt~l~fk~G~~v~~~~g~ 94 (113)
T cd02989 54 ----------TKFIKVNAEKAPFLVEKLNIKVLPTVILFKNGKTVDRIVGF 94 (113)
T ss_pred ----------CEEEEEEcccCHHHHHHCCCccCCEEEEEECCEEEEEEECc
Confidence 57899999999999999999999999999999988777664
No 49
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.59 E-value=3.9e-15 Score=128.59 Aligned_cols=97 Identities=20% Similarity=0.338 Sum_probs=82.3
Q ss_pred cchhhhhhh--ccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCCccccc
Q psy1110 105 TDDNFDLVI--QEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGEPTTH 182 (366)
Q Consensus 105 ~~~~~~~~i--~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~~~~~ 182 (366)
+.++|++.| +++++++|.|||+||+||+.+.|.++++++++.+.
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~---------------------------------- 55 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNF---------------------------------- 55 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc----------------------------------
Confidence 357888877 45889999999999999999999999999998776
Q ss_pred CCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCCCCCC
Q psy1110 183 PSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINSGSFS 262 (366)
Q Consensus 183 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~~~~~ 262 (366)
T Consensus 56 -------------------------------------------------------------------------------- 55 (142)
T PLN00410 56 -------------------------------------------------------------------------------- 55 (142)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccceeEEEEecccccccccccccccCCeEE-EecCCc-eeeecCC--------CCCHHHHHHHHhC
Q psy1110 263 PRQITGILAAVDVTREKSLGKRFDIKGFPTLK-YFRAGS-VAFDAGH--------LRDASRLVEFMRD 320 (366)
Q Consensus 263 ~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~-~fk~G~-~~~~~~g--------~~~~e~l~~fi~~ 320 (366)
+.|+++|.+++.+++..|+|++.||++ +|++|+ .+.+.+| ..+.++|++-++.
T Consensus 56 -----~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~ 118 (142)
T PLN00410 56 -----AVIYLVDITEVPDFNTMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 118 (142)
T ss_pred -----eEEEEEECCCCHHHHHHcCccCCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHH
Confidence 678999999999999999999887766 889998 6777778 5677777776654
No 50
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.58 E-value=5.3e-15 Score=150.07 Aligned_cols=106 Identities=23% Similarity=0.480 Sum_probs=89.0
Q ss_pred CCceEEecchhhhhhhc---cCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeec
Q psy1110 98 ESEVVHLTDDNFDLVIQ---EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRN 174 (366)
Q Consensus 98 ~~~v~~l~~~~~~~~i~---~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~ 174 (366)
...|..|+..||+++++ .+++++|.|||+||++|+.+.|.|++++++|.+.
T Consensus 350 ~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~-------------------------- 403 (463)
T TIGR00424 350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS-------------------------- 403 (463)
T ss_pred CCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC--------------------------
Confidence 45799999999999885 6899999999999999999999999999998654
Q ss_pred CCCcccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeecccccccc
Q psy1110 175 KNGEPTTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIK 254 (366)
Q Consensus 175 ~~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~ 254 (366)
T Consensus 404 -------------------------------------------------------------------------------- 403 (463)
T TIGR00424 404 -------------------------------------------------------------------------------- 403 (463)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCccceeEEEEeccccc-cc-ccccccccCCeEEEecCCc-eeeecC-CCCCHHHHHHHHhCC
Q psy1110 255 SINSGSFSPRQITGILAAVDVTREK-SL-GKRFDIKGFPTLKYFRAGS-VAFDAG-HLRDASRLVEFMRDP 321 (366)
Q Consensus 255 p~~~~~~~~~~~~v~~a~vd~~~~~-~l-~~~~~I~~~Ptl~~fk~G~-~~~~~~-g~~~~e~l~~fi~~~ 321 (366)
++.++++|++.+. .+ +.+|+|+++|||++|++|+ ....|. |.|+.+.|+.||+..
T Consensus 404 ------------~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 404 ------------GVKVAKFRADGDQKEFAKQELQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred ------------CcEEEEEECCCCccHHHHHHcCCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 1567778777653 34 4689999999999999986 345686 689999999999753
No 51
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.58 E-value=1.1e-14 Score=121.39 Aligned_cols=49 Identities=33% Similarity=0.760 Sum_probs=43.7
Q ss_pred ceEEecchhhhhhhcc-CCeEEEEEECCCChhhhcccHHHHHHHHHHhcc
Q psy1110 100 EVVHLTDDNFDLVIQE-ESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148 (366)
Q Consensus 100 ~v~~l~~~~~~~~i~~-~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~ 148 (366)
.+..|+..+|++.+.+ +++++|+||++||++|+.+.|.|+++++.+++.
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~ 51 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKW 51 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhc
Confidence 5789999999998755 579999999999999999999999999988654
No 52
>KOG0912|consensus
Probab=99.58 E-value=2.5e-15 Score=141.59 Aligned_cols=108 Identities=35% Similarity=0.655 Sum_probs=97.3
Q ss_pred ecchhhhhhhccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCCcccccC
Q psy1110 104 LTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGEPTTHP 183 (366)
Q Consensus 104 l~~~~~~~~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~~~~~~ 183 (366)
|+.+|++.++.+...++|.|||+||.-.+.++|.|++.|..++..
T Consensus 1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e----------------------------------- 45 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQE----------------------------------- 45 (375)
T ss_pred CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHh-----------------------------------
Confidence 467899999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCCCCCCC
Q psy1110 184 SGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINSGSFSP 263 (366)
Q Consensus 184 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~~~~~~ 263 (366)
|.
T Consensus 46 -----------------------------------------------------------------------------~P- 47 (375)
T KOG0912|consen 46 -----------------------------------------------------------------------------FP- 47 (375)
T ss_pred -----------------------------------------------------------------------------CC-
Confidence 00
Q ss_pred CccceeEEEEecccccccccccccccCCeEEEecCCceee-ecCCCCCHHHHHHHHhCCCCCC
Q psy1110 264 RQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAF-DAGHLRDASRLVEFMRDPTEPP 325 (366)
Q Consensus 264 ~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~-~~~g~~~~e~l~~fi~~~~~~~ 325 (366)
+.+++.+++||++...++.+|.|+.|||+.+|++|.... .|.|.|..+.|++||+.....+
T Consensus 48 -~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~~~rEYRg~RsVeaL~efi~kq~s~~ 109 (375)
T KOG0912|consen 48 -EGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEMMKREYRGQRSVEALIEFIEKQLSDP 109 (375)
T ss_pred -CcceEEEEcccchhhHHhhhhccccCceeeeeeccchhhhhhccchhHHHHHHHHHHHhccH
Confidence 134889999999999999999999999999999999776 8999999999999999877644
No 53
>PLN02309 5'-adenylylsulfate reductase
Probab=99.57 E-value=6.7e-15 Score=149.25 Aligned_cols=105 Identities=26% Similarity=0.516 Sum_probs=90.4
Q ss_pred CceEEecchhhhhhh---ccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecC
Q psy1110 99 SEVVHLTDDNFDLVI---QEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNK 175 (366)
Q Consensus 99 ~~v~~l~~~~~~~~i---~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~ 175 (366)
..|..|+.++|++++ +.+++++|+|||+||++|+.+.|.|+++++.|.+.
T Consensus 345 ~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~--------------------------- 397 (457)
T PLN02309 345 QNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGS--------------------------- 397 (457)
T ss_pred CCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC---------------------------
Confidence 478999999999987 46899999999999999999999999999998654
Q ss_pred CCcccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccc
Q psy1110 176 NGEPTTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKS 255 (366)
Q Consensus 176 ~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p 255 (366)
T Consensus 398 -------------------------------------------------------------------------------- 397 (457)
T PLN02309 398 -------------------------------------------------------------------------------- 397 (457)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCccceeEEEEecc-ccccccc-ccccccCCeEEEecCCc-eeeecC-CCCCHHHHHHHHhCC
Q psy1110 256 INSGSFSPRQITGILAAVDVT-REKSLGK-RFDIKGFPTLKYFRAGS-VAFDAG-HLRDASRLVEFMRDP 321 (366)
Q Consensus 256 ~~~~~~~~~~~~v~~a~vd~~-~~~~l~~-~~~I~~~Ptl~~fk~G~-~~~~~~-g~~~~e~l~~fi~~~ 321 (366)
++.++++|++ .+..++. +|+|+++|||++|++|. ....|. |.|+.++|+.||+..
T Consensus 398 -----------~V~f~kVD~d~~~~~la~~~~~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 398 -----------GVKVAKFRADGDQKEFAKQELQLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred -----------CeEEEEEECCCcchHHHHhhCCCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 2778899988 6677886 69999999999998886 345676 579999999999864
No 54
>KOG0907|consensus
Probab=99.57 E-value=8.9e-15 Score=120.62 Aligned_cols=52 Identities=19% Similarity=0.407 Sum_probs=40.8
Q ss_pred eEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhCC
Q psy1110 269 ILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDP 321 (366)
Q Consensus 269 ~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~~ 321 (366)
.|+++|+++..++++.++|+..|||+++|+|+.+.+..|. +.+.|.+.+..+
T Consensus 54 ~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa-~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 54 VFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGA-NKAELEKKIAKH 105 (106)
T ss_pred EEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecC-CHHHHHHHHHhc
Confidence 4555566556678899999999999999999999999886 555777766543
No 55
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.55 E-value=1.6e-14 Score=116.54 Aligned_cols=52 Identities=17% Similarity=0.403 Sum_probs=47.7
Q ss_pred eeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHh
Q psy1110 268 GILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMR 319 (366)
Q Consensus 268 v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~ 319 (366)
+.+..+|++++.++..+++|.++||+++|++|+.+.++.|..+.+.|.+||+
T Consensus 46 v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 46 VHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISGVKMKSEYREFIE 97 (97)
T ss_pred eEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeCCccHHHHHHhhC
Confidence 6778888888889999999999999999999999999999999999999874
No 56
>PTZ00051 thioredoxin; Provisional
Probab=99.54 E-value=2.3e-14 Score=115.02 Aligned_cols=89 Identities=30% Similarity=0.599 Sum_probs=77.7
Q ss_pred cchhhhhhhccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCCcccccCC
Q psy1110 105 TDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGEPTTHPS 184 (366)
Q Consensus 105 ~~~~~~~~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~~~~~~~ 184 (366)
+.++|..+++.++.++|.||++||++|+.+.|.++++++.+. +
T Consensus 7 ~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-~------------------------------------ 49 (98)
T PTZ00051 7 SQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-K------------------------------------ 49 (98)
T ss_pred CHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-C------------------------------------
Confidence 347888899889999999999999999999999999998653 2
Q ss_pred CCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCCCCCCCC
Q psy1110 185 GTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINSGSFSPR 264 (366)
Q Consensus 185 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~~~~~~~ 264 (366)
T Consensus 50 -------------------------------------------------------------------------------- 49 (98)
T PTZ00051 50 -------------------------------------------------------------------------------- 49 (98)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHH
Q psy1110 265 QITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRL 314 (366)
Q Consensus 265 ~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l 314 (366)
+.++.+|++.+..++++|+|+++||+++|++|+.+.++.|. ..++|
T Consensus 50 ---~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~-~~~~~ 95 (98)
T PTZ00051 50 ---MVFVKVDVDELSEVAEKENITSMPTFKVFKNGSVVDTLLGA-NDEAL 95 (98)
T ss_pred ---cEEEEEECcchHHHHHHCCCceeeEEEEEeCCeEEEEEeCC-CHHHh
Confidence 56778888888899999999999999999999999999995 55554
No 57
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.51 E-value=8e-14 Score=108.30 Aligned_cols=52 Identities=21% Similarity=0.393 Sum_probs=47.4
Q ss_pred eeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHh
Q psy1110 268 GILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMR 319 (366)
Q Consensus 268 v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~ 319 (366)
+.++.+|++....++..++++++||++++++|+.+..+.|..+.+.|.+||+
T Consensus 42 ~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~i~ 93 (93)
T cd02947 42 VKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDRVVGADPKEELEEFLE 93 (93)
T ss_pred ceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEEEecCCCHHHHHHHhC
Confidence 6788889998889999999999999999999999999999988899998873
No 58
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.50 E-value=5.8e-14 Score=116.49 Aligned_cols=43 Identities=14% Similarity=0.215 Sum_probs=37.2
Q ss_pred chhhhhhhc--cCCeEEEEEECCCChhhhcccHHHHHHHHHHhcc
Q psy1110 106 DDNFDLVIQ--EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148 (366)
Q Consensus 106 ~~~~~~~i~--~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~ 148 (366)
.+.|++.+. +++.++|.|+|+||++|+.+.|.++++|++|.+.
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~ 46 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM 46 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc
Confidence 356776664 5899999999999999999999999999999665
No 59
>KOG0912|consensus
Probab=99.49 E-value=8.4e-14 Score=131.42 Aligned_cols=116 Identities=10% Similarity=0.210 Sum_probs=82.0
Q ss_pred CCCchHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeee-EeecCCccHHHHHHHHhCcCCcchhhh
Q psy1110 12 EDTSPLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVK-YVYENGNTKDKIIEFVRNPQATSEEVK 88 (366)
Q Consensus 12 ~~~~~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~-~~y~g~r~~~~i~~fi~~~~~~~~~~~ 88 (366)
++|+...++-.+.+++.+|.|||+.+. +++.+|.|+ ||+++|++|... .+|+|.|..++|++|++++..+.
T Consensus 36 ~EAa~~~~~e~P~~kvvwg~VDcd~e~--~ia~ky~I~KyPTlKvfrnG~~~~rEYRg~RsVeaL~efi~kq~s~~---- 109 (375)
T KOG0912|consen 36 EEAAAKFKQEFPEGKVVWGKVDCDKED--DIADKYHINKYPTLKVFRNGEMMKREYRGQRSVEALIEFIEKQLSDP---- 109 (375)
T ss_pred HHHHHHHHHhCCCcceEEEEcccchhh--HHhhhhccccCceeeeeeccchhhhhhccchhHHHHHHHHHHHhccH----
Confidence 345555555555589999999996655 999999999 999999999765 59999999999999999988873
Q ss_pred ccCCCcCCCCCceEEecc-hhhhhhhccCCeEEEEEECCCChhhhcccHHHHHHHHHHhcc
Q psy1110 89 KKEQDWADTESEVVHLTD-DNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148 (366)
Q Consensus 89 ~~~~~~~~~~~~v~~l~~-~~~~~~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~ 148 (366)
+.+..+ .++..+...++-.+|-++.+--+ .-...+.++|..+.++
T Consensus 110 ------------i~Ef~sl~~l~n~~~p~K~~vIgyF~~kds---pey~~~~kva~~lr~d 155 (375)
T KOG0912|consen 110 ------------INEFESLDQLQNLDIPSKRTVIGYFPSKDS---PEYDNLRKVASLLRDD 155 (375)
T ss_pred ------------HHHHHhHHHHHhhhccccceEEEEeccCCC---chHHHHHHHHHHHhhc
Confidence 323322 44555555344445554443222 1334667777777777
No 60
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.48 E-value=1.4e-13 Score=123.34 Aligned_cols=49 Identities=27% Similarity=0.333 Sum_probs=43.0
Q ss_pred CCceEEecc-hhhhhhhccC---CeEEEEEECCCChhhhcccHHHHHHHHHHh
Q psy1110 98 ESEVVHLTD-DNFDLVIQEE---SSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146 (366)
Q Consensus 98 ~~~v~~l~~-~~~~~~i~~~---k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~ 146 (366)
-+.+..+++ ++|.+.+... .+++|.||++||++|+.+.|.+++||++|.
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~ 113 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP 113 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC
Confidence 467889999 9999888543 499999999999999999999999999874
No 61
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.48 E-value=1.6e-13 Score=115.94 Aligned_cols=59 Identities=10% Similarity=0.088 Sum_probs=50.7
Q ss_pred ceEEecchhhhhhhccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCc
Q psy1110 100 EVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHR 160 (366)
Q Consensus 100 ~v~~l~~~~~~~~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~ 160 (366)
++..++.+++.+.+++++.++|+||++||++|+.+.|.+++++++ .++.++.+|++.+.
T Consensus 7 ~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~ 65 (122)
T TIGR01295 7 GLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNG 65 (122)
T ss_pred cceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCcc
Confidence 567788899999999999999999999999999999999999998 44567777776543
No 62
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.42 E-value=5.1e-13 Score=112.46 Aligned_cols=110 Identities=15% Similarity=0.331 Sum_probs=83.2
Q ss_pred hhhhhhhccC-CeEEEEEECCCChhhhcccHHHH---HHHHHHhccccEEEeeccCCcccccccceeeeeecCCCccccc
Q psy1110 107 DNFDLVIQEE-SSVLVMFYAPWCGHCKKLKPEYE---EAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGEPTTH 182 (366)
Q Consensus 107 ~~~~~~i~~~-k~vlV~F~a~wC~~Ck~~~p~~e---~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~~~~~ 182 (366)
+.++...+++ ++++|.||++||++|+++.|.+. .+.+.+.+.+.++.+|+++..++.. +. +
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~-~~---------~----- 68 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTD-FD---------G----- 68 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeec-cC---------C-----
Confidence 3456677788 99999999999999999999885 5667777677788888776443111 10 0
Q ss_pred CCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCCCCCC
Q psy1110 183 PSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINSGSFS 262 (366)
Q Consensus 183 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~~~~~ 262 (366)
T Consensus 69 -------------------------------------------------------------------------------- 68 (125)
T cd02951 69 -------------------------------------------------------------------------------- 68 (125)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccceeEEEEecccccccccccccccCCeEEEecC--CceeeecCCCCCHHHHHHHHhCCC
Q psy1110 263 PRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRA--GSVAFDAGHLRDASRLVEFMRDPT 322 (366)
Q Consensus 263 ~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~--G~~~~~~~g~~~~e~l~~fi~~~~ 322 (366)
.......++.+|+|+++||+++|.+ |+.+.+..|..+.+.+.++|+...
T Consensus 69 -----------~~~~~~~l~~~~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~ 119 (125)
T cd02951 69 -----------EALSEKELARKYRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQ 119 (125)
T ss_pred -----------CCccHHHHHHHcCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHH
Confidence 0123457888999999999999965 698999999999888888876543
No 63
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.42 E-value=4.8e-13 Score=111.42 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=44.4
Q ss_pred eeEEEEecccccccccccccccCCeEEEecCCceee--ecCCCCCHHHHHHHHhCC
Q psy1110 268 GILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAF--DAGHLRDASRLVEFMRDP 321 (366)
Q Consensus 268 v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~--~~~g~~~~e~l~~fi~~~ 321 (366)
+.+..+|.+++..+..+|+|+++||+++|++|.... ++.|....+++.+||+..
T Consensus 54 i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~~el~~~i~~i 109 (113)
T cd02975 54 LKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAGYEFASLIEDI 109 (113)
T ss_pred eEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCchHHHHHHHHHH
Confidence 567788888888999999999999999999875433 677888888888888654
No 64
>KOG0908|consensus
Probab=99.40 E-value=7.3e-13 Score=122.12 Aligned_cols=101 Identities=26% Similarity=0.455 Sum_probs=85.9
Q ss_pred cchhhhhhh--ccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCCccccc
Q psy1110 105 TDDNFDLVI--QEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGEPTTH 182 (366)
Q Consensus 105 ~~~~~~~~i--~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~~~~~ 182 (366)
++.+|+.-+ .+.+.++|+|+|+|||||+.+.|.|..|+++|.+.
T Consensus 8 ~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~a---------------------------------- 53 (288)
T KOG0908|consen 8 SDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGA---------------------------------- 53 (288)
T ss_pred CcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCccc----------------------------------
Confidence 457788655 34679999999999999999999999999999664
Q ss_pred CCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCCCCCC
Q psy1110 183 PSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINSGSFS 262 (366)
Q Consensus 183 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~~~~~ 262 (366)
T Consensus 54 -------------------------------------------------------------------------------- 53 (288)
T KOG0908|consen 54 -------------------------------------------------------------------------------- 53 (288)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccceeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhCCCCCCC
Q psy1110 263 PRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTEPPP 326 (366)
Q Consensus 263 ~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~~~~~~~ 326 (366)
+|+++|.++-...+..++|+..||+++|++|..+..+.|. +...|.+-+.++..-.+
T Consensus 54 ------VFlkVdVd~c~~taa~~gV~amPTFiff~ng~kid~~qGA-d~~gLe~kv~~~~stsa 110 (288)
T KOG0908|consen 54 ------VFLKVDVDECRGTAATNGVNAMPTFIFFRNGVKIDQIQGA-DASGLEEKVAKYASTSA 110 (288)
T ss_pred ------EEEEEeHHHhhchhhhcCcccCceEEEEecCeEeeeecCC-CHHHHHHHHHHHhccCc
Confidence 5788888888888889999999999999999999999995 78888888877766553
No 65
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.38 E-value=1.2e-12 Score=120.86 Aligned_cols=86 Identities=10% Similarity=0.141 Sum_probs=63.5
Q ss_pred eeEEEEecccccccccccccccCCeEEEecCCcee-eecCCCCCHHHHHHHHhCCCCCCCCCCCCCCCCCCCCeeEEech
Q psy1110 268 GILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVA-FDAGHLRDASRLVEFMRDPTEPPPPPPPEPAWAEEPSEVYHLGA 346 (366)
Q Consensus 268 v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~-~~~~g~~~~e~l~~fi~~~~~~~~~~~~~~~~~~~~~~v~~lt~ 346 (366)
+.+..+|.+++..++.+|+|.++||+++|++|+.+ .++.|..+.+.+.+||+...+-..+ -..|+.
T Consensus 56 i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~~~~l~~~i~~~~~~~~~-------------~~~L~~ 122 (215)
T TIGR02187 56 LEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIPAGYEFAALIEDIVRVSQG-------------EPGLSE 122 (215)
T ss_pred EEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecCCHHHHHHHHHHHHHhcCC-------------CCCCCH
Confidence 55677777789999999999999999999999987 4899999989999998876532210 124555
Q ss_pred hcHHHHhhccCceEEE-EecC
Q psy1110 347 DNFASTLRKKKHALVM-FYAP 366 (366)
Q Consensus 347 ~~~~~~~~~~~~~~v~-fy~~ 366 (366)
...+.+-..++++.|. ||+|
T Consensus 123 ~~~~~l~~~~~pv~I~~F~a~ 143 (215)
T TIGR02187 123 KTVELLQSLDEPVRIEVFVTP 143 (215)
T ss_pred HHHHHHHhcCCCcEEEEEECC
Confidence 5555555555665444 8875
No 66
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.35 E-value=3.3e-12 Score=116.15 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=42.6
Q ss_pred CCceEEecchhhhhhh-cc--CCeEEEEEECCCChhhhcccHHHHHHHHHHh
Q psy1110 98 ESEVVHLTDDNFDLVI-QE--ESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146 (366)
Q Consensus 98 ~~~v~~l~~~~~~~~i-~~--~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~ 146 (366)
-+.+..++..+|...+ .. +.+|+|.||++||++|+.+.|.|++||.+|.
T Consensus 81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~ 132 (192)
T cd02988 81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP 132 (192)
T ss_pred CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC
Confidence 4689999999998755 33 3589999999999999999999999999984
No 67
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.33 E-value=2.3e-11 Score=107.99 Aligned_cols=164 Identities=20% Similarity=0.272 Sum_probs=134.4
Q ss_pred chHHHhhcCCCCeEEEEeeecccCCcchhccCCcc-ceEEeeecC-eeeEeecCC-ccHHHHHHHHhCcCCcchhhhccC
Q psy1110 15 SPLAKEIVKPKAITLGLIERLTEKADPVCTREKAK-KKVRRQKNA-EVKYVYENG-NTKDKIIEFVRNPQATSEEVKKKE 91 (366)
Q Consensus 15 ~~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~-Pti~~f~~g-~~~~~y~g~-r~~~~i~~fi~~~~~~~~~~~~~~ 91 (366)
..+|+.+. +.+.|+.+.- . ++|++++|. |+|.+|+++ +....|.|. .+.+.|.+||....-+
T Consensus 13 ~~~A~~~~--~~~~F~~~~~---~--~~~~~~~~~~p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P-------- 77 (184)
T PF13848_consen 13 EEAAEKLK--GDYQFGVTFN---E--ELAKKYGIKEPTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFP-------- 77 (184)
T ss_dssp HHHHHHHT--TTSEEEEEE----H--HHHHHCTCSSSEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSST--------
T ss_pred HHHHHhCc--CCcEEEEEcH---H--HHHHHhCCCCCcEEEeccCCCCceecccccCCHHHHHHHHHHhccc--------
Confidence 46788888 6799998874 2 599999999 999999984 456899997 8999999999988877
Q ss_pred CCcCCCCCceEEecchhhhhhhccCCe-EEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceee
Q psy1110 92 QDWADTESEVVHLTDDNFDLVIQEESS-VLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVS 170 (366)
Q Consensus 92 ~~~~~~~~~v~~l~~~~~~~~i~~~k~-vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~ 170 (366)
.+..+|.+|+..+..++.+ +++.|..........+...++.+|+++.++
T Consensus 78 --------~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~---------------------- 127 (184)
T PF13848_consen 78 --------LVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK---------------------- 127 (184)
T ss_dssp --------SCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT----------------------
T ss_pred --------cccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe----------------------
Confidence 6999999999999988876 777777666777788888888888887766
Q ss_pred eeecCCCcccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeecccc
Q psy1110 171 SLRNKNGEPTTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTG 250 (366)
Q Consensus 171 ~l~~~~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c 250 (366)
T Consensus 128 -------------------------------------------------------------------------------- 127 (184)
T PF13848_consen 128 -------------------------------------------------------------------------------- 127 (184)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCCCCCCccceeEEEEecccccccccccccc--cCCeEEEec--CCceeeecCCCCCHHHHHHHHhC
Q psy1110 251 KRIKSINSGSFSPRQITGILAAVDVTREKSLGKRFDIK--GFPTLKYFR--AGSVAFDAGHLRDASRLVEFMRD 320 (366)
Q Consensus 251 ~~~~p~~~~~~~~~~~~v~~a~vd~~~~~~l~~~~~I~--~~Ptl~~fk--~G~~~~~~~g~~~~e~l~~fi~~ 320 (366)
+.++.+|+.....++..++++ .+|+++++. .++..+...|..+.++|.+|+++
T Consensus 128 -----------------~~f~~~d~~~~~~~~~~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 128 -----------------INFVYVDADDFPRLLKYFGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp -----------------SEEEEEETTTTHHHHHHTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred -----------------EEEEEeehHHhHHHHHHcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 678888888778888999998 899999986 45533434888999999999863
No 68
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.33 E-value=3.4e-12 Score=103.17 Aligned_cols=54 Identities=20% Similarity=0.222 Sum_probs=44.6
Q ss_pred eeEEEEecccccccccccccc--cCCeEEEecC--CceeeecCCCCCHHHHHHHHhCC
Q psy1110 268 GILAAVDVTREKSLGKRFDIK--GFPTLKYFRA--GSVAFDAGHLRDASRLVEFMRDP 321 (366)
Q Consensus 268 v~~a~vd~~~~~~l~~~~~I~--~~Ptl~~fk~--G~~~~~~~g~~~~e~l~~fi~~~ 321 (366)
+.|+.+|++++..++..++|. ++|+++++++ |+......|..+.++|.+|+.+.
T Consensus 45 v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 45 LLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred EEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccCHHHHHHHHHhh
Confidence 778888888888899999999 9999999988 66444445556899999999864
No 69
>PTZ00062 glutaredoxin; Provisional
Probab=99.32 E-value=6.2e-12 Score=115.20 Aligned_cols=92 Identities=10% Similarity=0.145 Sum_probs=79.5
Q ss_pred cchhhhhhhccC-CeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCCcccccC
Q psy1110 105 TDDNFDLVIQEE-SSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGEPTTHP 183 (366)
Q Consensus 105 ~~~~~~~~i~~~-k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~~~~~~ 183 (366)
+.++++++++++ +.++++|||+||++|+.+.|.+.+|++.|. +
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~----------------------------------- 48 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP-S----------------------------------- 48 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC-C-----------------------------------
Confidence 457788888764 788999999999999999999999999873 2
Q ss_pred CCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCCCCCCC
Q psy1110 184 SGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINSGSFSP 263 (366)
Q Consensus 184 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~~~~~~ 263 (366)
T Consensus 49 -------------------------------------------------------------------------------- 48 (204)
T PTZ00062 49 -------------------------------------------------------------------------------- 48 (204)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccceeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhCCCCCC
Q psy1110 264 RQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTEPP 325 (366)
Q Consensus 264 ~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~~~~~~ 325 (366)
+.|+++|.+ |+|.++|||++|++|+.+.+..|. ++..|..++..+..+.
T Consensus 49 ----~~F~~V~~d--------~~V~~vPtfv~~~~g~~i~r~~G~-~~~~~~~~~~~~~~~~ 97 (204)
T PTZ00062 49 ----LEFYVVNLA--------DANNEYGVFEFYQNSQLINSLEGC-NTSTLVSFIRGWAQKG 97 (204)
T ss_pred ----cEEEEEccc--------cCcccceEEEEEECCEEEeeeeCC-CHHHHHHHHHHHcCCC
Confidence 567777765 999999999999999999999986 7899999998887654
No 70
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.28 E-value=8.1e-12 Score=105.07 Aligned_cols=54 Identities=19% Similarity=0.473 Sum_probs=43.7
Q ss_pred cchhhhhhhcc--CCeEEEEEEC-------CCChhhhcccHHHHHHHHHHhccccEEEeeccC
Q psy1110 105 TDDNFDLVIQE--ESSVLVMFYA-------PWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLR 158 (366)
Q Consensus 105 ~~~~~~~~i~~--~k~vlV~F~a-------~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~ 158 (366)
+.++|.+.+.. +++++|.||| +||++|+.+.|.+++++.++.+++.|+.||+++
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~ 70 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGD 70 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCC
Confidence 34667777754 7899999999 999999999999999999998665555555544
No 71
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.28 E-value=1.2e-11 Score=95.72 Aligned_cols=50 Identities=14% Similarity=0.202 Sum_probs=42.2
Q ss_pred eeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhCC
Q psy1110 268 GILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDP 321 (366)
Q Consensus 268 v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~~ 321 (366)
+.+.++|..++.+++++++++++||+++ +|+ .++.|..+.+.|.+++...
T Consensus 32 ~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~--~~~~G~~~~~~l~~~l~~~ 81 (82)
T TIGR00411 32 VEVEYINVMENPQKAMEYGIMAVPAIVI--NGD--VEFIGAPTKEELVEAIKKR 81 (82)
T ss_pred eEEEEEeCccCHHHHHHcCCccCCEEEE--CCE--EEEecCCCHHHHHHHHHhh
Confidence 5677888888888899999999999986 776 3788988999999988754
No 72
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.26 E-value=5.2e-12 Score=100.84 Aligned_cols=50 Identities=24% Similarity=0.472 Sum_probs=42.0
Q ss_pred CCeEEEEEECCCChhhhcccHHHHHHHHHHh--ccccEEEeeccCCcccccc
Q psy1110 116 ESSVLVMFYAPWCGHCKKLKPEYEEAAATMK--QQRAYYGMGMLRHRPQASN 165 (366)
Q Consensus 116 ~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~--~~v~~~~v~~~~~~~~~~~ 165 (366)
+++++|+|||+||++|++..|.+.+++++|+ +++.++.|++++..+..+.
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~ 52 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKK 52 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHH
Confidence 5899999999999999999999999999999 6699999999876554433
No 73
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.26 E-value=1.1e-11 Score=104.38 Aligned_cols=45 Identities=20% Similarity=0.468 Sum_probs=38.1
Q ss_pred cCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcc
Q psy1110 115 EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRP 161 (366)
Q Consensus 115 ~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~ 161 (366)
.+++++|+||++||++|+++.|.++++++.+ .+.++.|+.++..+
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~--~~~vv~v~~~~~~~ 68 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG--RVPIYGINYKDNPE 68 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc--CcEEEEEECCCCHH
Confidence 4789999999999999999999999998876 37888888765443
No 74
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.22 E-value=1.4e-11 Score=107.24 Aligned_cols=48 Identities=21% Similarity=0.292 Sum_probs=40.9
Q ss_pred cCCeEEEEEECCCChhhhcccHHHHHHHHHHhc--------cccEEEeeccCCccc
Q psy1110 115 EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQ--------QRAYYGMGMLRHRPQ 162 (366)
Q Consensus 115 ~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~--------~v~~~~v~~~~~~~~ 162 (366)
.+++++|+|||+||++|++++|.+.++++++.+ ++.++.|+.+++...
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~ 79 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQ 79 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHH
Confidence 579999999999999999999999999987764 378888887765543
No 75
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.21 E-value=1.1e-11 Score=103.98 Aligned_cols=40 Identities=23% Similarity=0.619 Sum_probs=32.6
Q ss_pred hhhhhccCCeEEEEEECCCChhhhcccHHHHHHHHHHhcc
Q psy1110 109 FDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148 (366)
Q Consensus 109 ~~~~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~ 148 (366)
+.....++++++|.|||+||++|+.+.|.+.+.+......
T Consensus 12 l~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~ 51 (117)
T cd02959 12 IKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELS 51 (117)
T ss_pred HHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhc
Confidence 3444466899999999999999999999999987755433
No 76
>KOG1731|consensus
Probab=99.19 E-value=1.1e-11 Score=125.94 Aligned_cols=55 Identities=25% Similarity=0.682 Sum_probs=47.4
Q ss_pred cCCCCCceEEecchhhhhhhcc-CCeEEEEEECCCChhhhcccHHHHHHHHHHhcc
Q psy1110 94 WADTESEVVHLTDDNFDLVIQE-ESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148 (366)
Q Consensus 94 ~~~~~~~v~~l~~~~~~~~i~~-~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~ 148 (366)
+-+.+..|..|+.++|+..+.+ .+..+|.||++|||||++++|+|+++|+....-
T Consensus 34 Ly~~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W 89 (606)
T KOG1731|consen 34 LYSPDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKW 89 (606)
T ss_pred ccCCCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcc
Confidence 3455678999999999998855 458999999999999999999999999987654
No 77
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.19 E-value=3.5e-11 Score=107.38 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=39.3
Q ss_pred cccccccccccccccCCeEEEe-cCCceeeecCCCCCHHHHHHHHhCCC
Q psy1110 275 VTREKSLGKRFDIKGFPTLKYF-RAGSVAFDAGHLRDASRLVEFMRDPT 322 (366)
Q Consensus 275 ~~~~~~l~~~~~I~~~Ptl~~f-k~G~~~~~~~g~~~~e~l~~fi~~~~ 322 (366)
.+....+...|++.++|+.+++ ++|+++.++.|..+.+++.+++.+..
T Consensus 123 ~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 123 IDPNGKLGLDLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred ECCCCchHHhcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 3455678889999999965555 89999999999999999999887654
No 78
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.16 E-value=5.3e-11 Score=122.56 Aligned_cols=114 Identities=16% Similarity=0.244 Sum_probs=82.3
Q ss_pred ccCCeEEEEEECCCChhhhcccHHHHHHHHHHhc-cccEEEeeccCCcc--cccccceeeeeecCCCcccccCCCCCCCC
Q psy1110 114 QEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQ-QRAYYGMGMLRHRP--QASNVAVVSSLRNKNGEPTTHPSGTPQTS 190 (366)
Q Consensus 114 ~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~-~v~~~~v~~~~~~~--~~~~~~v~~~l~~~~G~~~~~~~g~~~~~ 190 (366)
+++++++|+|||+||++|++++|.+++++++++. .+.++.|+++.... ....+
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~------------------------ 109 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDF------------------------ 109 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHH------------------------
Confidence 4689999999999999999999999999999974 47777777632111 00000
Q ss_pred CCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCCCCCCCCccceeE
Q psy1110 191 DTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINSGSFSPRQITGIL 270 (366)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~~~~~~~~~~v~~ 270 (366)
.+.+.. -+..-
T Consensus 110 ----------------------------------~~~~~~-----------------------------------~~y~~ 120 (521)
T PRK14018 110 ----------------------------------QKWYAG-----------------------------------LDYPK 120 (521)
T ss_pred ----------------------------------HHHHHh-----------------------------------CCCcc
Confidence 000000 00001
Q ss_pred EEEecccccccccccccccCCeEEEe-cCCceeeecCCCCCHHHHHHHHhC
Q psy1110 271 AAVDVTREKSLGKRFDIKGFPTLKYF-RAGSVAFDAGHLRDASRLVEFMRD 320 (366)
Q Consensus 271 a~vd~~~~~~l~~~~~I~~~Ptl~~f-k~G~~~~~~~g~~~~e~l~~fi~~ 320 (366)
..++.+.+..+.+.|+|+++||++++ ++|+++..+.|..+.+.|.++|+.
T Consensus 121 ~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 121 LPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred cceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 23445667789999999999998655 899999999999999999999883
No 79
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.14 E-value=1.9e-10 Score=101.60 Aligned_cols=110 Identities=16% Similarity=0.309 Sum_probs=83.6
Q ss_pred cCCeEEEEEECCCChhhhcccHHHHHHHHHHhcc-ccEEEeeccCCcccccccceeeeeecCCCcccccCCCCCCCCCCC
Q psy1110 115 EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ-RAYYGMGMLRHRPQASNVAVVSSLRNKNGEPTTHPSGTPQTSDTP 193 (366)
Q Consensus 115 ~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~~~~~~~g~~~~~~~~ 193 (366)
.+++++|.||++||++|+...+.+.++++++.+. +.++.+++++..+....+.
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~-------------------------- 113 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFV-------------------------- 113 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHH--------------------------
Confidence 5789999999999999999999999999999876 8899998876543222220
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCCCCCCCCccceeEEEE
Q psy1110 194 RTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINSGSFSPRQITGILAAV 273 (366)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~~~~~~~~~~v~~a~v 273 (366)
..+ +.+..+
T Consensus 114 ------------------------------------~~~--------------------------------~~~~~~--- 122 (173)
T PRK03147 114 ------------------------------------NRY--------------------------------GLTFPV--- 122 (173)
T ss_pred ------------------------------------HHh--------------------------------CCCceE---
Confidence 000 000111
Q ss_pred ecccccccccccccccCCeEEEe-cCCceeeecCCCCCHHHHHHHHhCC
Q psy1110 274 DVTREKSLGKRFDIKGFPTLKYF-RAGSVAFDAGHLRDASRLVEFMRDP 321 (366)
Q Consensus 274 d~~~~~~l~~~~~I~~~Ptl~~f-k~G~~~~~~~g~~~~e~l~~fi~~~ 321 (366)
-++.+..+++.|+|+++|+++++ ++|+++..+.|..+.+++.+++++.
T Consensus 123 ~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 123 AIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred EECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 12455688899999999998877 6899888999999999999988743
No 80
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.13 E-value=1.1e-10 Score=105.32 Aligned_cols=44 Identities=25% Similarity=0.475 Sum_probs=36.8
Q ss_pred cCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcc
Q psy1110 115 EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRP 161 (366)
Q Consensus 115 ~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~ 161 (366)
.+++++|.|||+||++|++..|.+.++++ ..+.++.|+.+++..
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~---~~~~vi~v~~~~~~~ 110 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSA---QGIRVVGMNYKDDRQ 110 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHH---cCCEEEEEECCCCHH
Confidence 58999999999999999999999998864 357788888765443
No 81
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.06 E-value=3e-10 Score=119.19 Aligned_cols=54 Identities=26% Similarity=0.468 Sum_probs=42.5
Q ss_pred eEEEEeccc----ccccccccccccCCeEEEec-CCcee--eecCCCCCHHHHHHHHhCCC
Q psy1110 269 ILAAVDVTR----EKSLGKRFDIKGFPTLKYFR-AGSVA--FDAGHLRDASRLVEFMRDPT 322 (366)
Q Consensus 269 ~~a~vd~~~----~~~l~~~~~I~~~Ptl~~fk-~G~~~--~~~~g~~~~e~l~~fi~~~~ 322 (366)
.+.++|.++ +.++.++|+++++||+++|+ +|+.+ .++.|..+.+++.+++++..
T Consensus 510 ~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 510 VLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred EEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 345555543 35778899999999999995 88873 68889999999999998753
No 82
>KOG4277|consensus
Probab=99.06 E-value=2.8e-09 Score=100.94 Aligned_cols=92 Identities=17% Similarity=0.288 Sum_probs=73.6
Q ss_pred hHHHhhcCC-CCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHHhCcCCcchhhhccCC
Q psy1110 16 PLAKEIVKP-KAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFVRNPQATSEEVKKKEQ 92 (366)
Q Consensus 16 ~la~e~~~~-~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi~~~~~~~~~~~~~~~ 92 (366)
+++.+|..- ..|++|++|| ..+..+++++||+ |||++|++ ...+.|+|+|++++|++|..+....
T Consensus 67 eVG~elkdig~PikVGKlDa--T~f~aiAnefgiqGYPTIk~~kg-d~a~dYRG~R~Kd~iieFAhR~a~a--------- 134 (468)
T KOG4277|consen 67 EVGHELKDIGLPIKVGKLDA--TRFPAIANEFGIQGYPTIKFFKG-DHAIDYRGGREKDAIIEFAHRCAAA--------- 134 (468)
T ss_pred HhCcchhhcCCceeeccccc--ccchhhHhhhccCCCceEEEecC-CeeeecCCCccHHHHHHHHHhcccc---------
Confidence 455566643 5799999999 6688999999999 99999985 4689999999999999999998876
Q ss_pred CcCCCCCceEEecc--hhhhhhhccCCeEEEEEECC
Q psy1110 93 DWADTESEVVHLTD--DNFDLVIQEESSVLVMFYAP 126 (366)
Q Consensus 93 ~~~~~~~~v~~l~~--~~~~~~i~~~k~vlV~F~a~ 126 (366)
.+..++. ..|+++-+.+++.+|+|...
T Consensus 135 -------iI~pi~enQ~~fehlq~Rhq~ffVf~Gtg 163 (468)
T KOG4277|consen 135 -------IIEPINENQIEFEHLQARHQPFFVFFGTG 163 (468)
T ss_pred -------eeeecChhHHHHHHHhhccCceEEEEeCC
Confidence 3445544 34556667789999988754
No 83
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.06 E-value=1.8e-10 Score=94.51 Aligned_cols=41 Identities=20% Similarity=0.575 Sum_probs=32.4
Q ss_pred ccccccccccccCCeEEEe-cCCceeeecCCCCCHHHHHHHH
Q psy1110 278 EKSLGKRFDIKGFPTLKYF-RAGSVAFDAGHLRDASRLVEFM 318 (366)
Q Consensus 278 ~~~l~~~~~I~~~Ptl~~f-k~G~~~~~~~g~~~~e~l~~fi 318 (366)
+..+...++|+++||++++ ++|+.+.++.|..+.++|..++
T Consensus 71 ~~~l~~~~~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 71 NKELAQRYGVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp HHHHHHHTT--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred HHHHHHHcCCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 3478899999999999999 4899999999999999998775
No 84
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.04 E-value=3.4e-10 Score=93.07 Aligned_cols=40 Identities=25% Similarity=0.330 Sum_probs=35.0
Q ss_pred cCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEe
Q psy1110 115 EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGM 154 (366)
Q Consensus 115 ~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v 154 (366)
++++++|.||++||++|+...|.++++++.+.+.+.++.+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v 59 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLA 59 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEE
Confidence 3789999999999999999999999999988776666654
No 85
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.04 E-value=3.2e-10 Score=96.46 Aligned_cols=46 Identities=24% Similarity=0.424 Sum_probs=40.0
Q ss_pred cCCeEEEEEECCCChhhhcccHHHHHHHHHHhcc---ccEEEeeccCCc
Q psy1110 115 EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ---RAYYGMGMLRHR 160 (366)
Q Consensus 115 ~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~---v~~~~v~~~~~~ 160 (366)
.+++++|+||++||++|+.+.|.++++++.+.++ +.++.++++...
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~ 64 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSE 64 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCH
Confidence 5799999999999999999999999999998763 678888877654
No 86
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.04 E-value=8.1e-10 Score=97.00 Aligned_cols=42 Identities=19% Similarity=0.461 Sum_probs=35.3
Q ss_pred cCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccC
Q psy1110 115 EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLR 158 (366)
Q Consensus 115 ~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~ 158 (366)
.++..+|+|||+||++|++..|.+++++++|. +.++.|++++
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~ 90 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDG 90 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCC
Confidence 35667999999999999999999999999884 5677777654
No 87
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.03 E-value=7.2e-10 Score=93.99 Aligned_cols=53 Identities=17% Similarity=0.343 Sum_probs=38.0
Q ss_pred chhhhhhhccCCeEEEEEECCCChhhhcccHH-H--HHHHHHHhccccEEEeeccC
Q psy1110 106 DDNFDLVIQEESSVLVMFYAPWCGHCKKLKPE-Y--EEAAATMKQQRAYYGMGMLR 158 (366)
Q Consensus 106 ~~~~~~~i~~~k~vlV~F~a~wC~~Ck~~~p~-~--e~la~~~~~~v~~~~v~~~~ 158 (366)
++.+....+++|+++|+|+|+||++|+.+.+. | .++++.+..+..++++|.++
T Consensus 5 ~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~ 60 (124)
T cd02955 5 EEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREE 60 (124)
T ss_pred HHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCc
Confidence 45566777889999999999999999999873 3 35666665564444444433
No 88
>PHA02125 thioredoxin-like protein
Probab=99.01 E-value=6.5e-10 Score=85.65 Aligned_cols=44 Identities=25% Similarity=0.298 Sum_probs=33.7
Q ss_pred EEEEecccccccccccccccCCeEEEecCCceeeecCCC-CCHHHHHH
Q psy1110 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHL-RDASRLVE 316 (366)
Q Consensus 270 ~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~-~~~e~l~~ 316 (366)
++++|.+.+.+++++|+|+++||++ +|+.+.++.|. ++..+|.+
T Consensus 27 ~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~ 71 (75)
T PHA02125 27 YVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKE 71 (75)
T ss_pred EEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHH
Confidence 5667777888999999999999998 67777777774 44455554
No 89
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.01 E-value=6.4e-10 Score=86.05 Aligned_cols=29 Identities=14% Similarity=0.401 Sum_probs=26.3
Q ss_pred EEEEECCCChhhhcccHHHHHHHHHHhcc
Q psy1110 120 LVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148 (366)
Q Consensus 120 lV~F~a~wC~~Ck~~~p~~e~la~~~~~~ 148 (366)
.|.||++||++|+.+.|.++++++++...
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~ 30 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGID 30 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCC
Confidence 48899999999999999999999988655
No 90
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.00 E-value=1.6e-09 Score=90.23 Aligned_cols=42 Identities=12% Similarity=0.188 Sum_probs=34.7
Q ss_pred ccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHH
Q psy1110 276 TREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEF 317 (366)
Q Consensus 276 ~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~f 317 (366)
+.+..+++.|+|.++|+++++.+|.++..+.|..+.+.|.+.
T Consensus 80 d~~~~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 80 DPDGVISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRLR 121 (123)
T ss_pred CCCcHHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHhh
Confidence 345678999999999999999655588899999999887654
No 91
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.99 E-value=1.1e-09 Score=92.56 Aligned_cols=46 Identities=24% Similarity=0.432 Sum_probs=39.5
Q ss_pred cCCeEEEEEECCCChhhhcccHHHHHHHHHHhc---cccEEEeeccCCc
Q psy1110 115 EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQ---QRAYYGMGMLRHR 160 (366)
Q Consensus 115 ~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~---~v~~~~v~~~~~~ 160 (366)
.+++++|+||++||++|+++.|.+.++++++.+ .+.++.++++...
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~ 65 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDE 65 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCH
Confidence 578999999999999999999999999998864 3677788876654
No 92
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.96 E-value=1.8e-09 Score=120.63 Aligned_cols=43 Identities=21% Similarity=0.352 Sum_probs=38.3
Q ss_pred cCCeEEEEEECCCChhhhcccHHHHHHHHHHhcc-ccEEEeecc
Q psy1110 115 EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ-RAYYGMGML 157 (366)
Q Consensus 115 ~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~-v~~~~v~~~ 157 (366)
.+++++|+|||+||++|+...|.+++++++|++. +.++.|++.
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~ 462 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSA 462 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecc
Confidence 4799999999999999999999999999999876 777777643
No 93
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.95 E-value=1.5e-09 Score=103.95 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=35.7
Q ss_pred CCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccC
Q psy1110 116 ESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLR 158 (366)
Q Consensus 116 ~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~ 158 (366)
+++++|.||++||++|+.+.|.+++++++|. +.++.|+++.
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~ 206 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDG 206 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCC
Confidence 7899999999999999999999999999985 5566666554
No 94
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.93 E-value=3.2e-09 Score=91.34 Aligned_cols=47 Identities=28% Similarity=0.538 Sum_probs=42.5
Q ss_pred cCCeEEEEEECC-CChhhhcccHHHHHHHHHHhcc-ccEEEeeccCCcc
Q psy1110 115 EESSVLVMFYAP-WCGHCKKLKPEYEEAAATMKQQ-RAYYGMGMLRHRP 161 (366)
Q Consensus 115 ~~k~vlV~F~a~-wC~~Ck~~~p~~e~la~~~~~~-v~~~~v~~~~~~~ 161 (366)
.+++++|.||++ ||++|++..|.+.++++.|.+. +.++.++.+.+..
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~ 75 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPP 75 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHH
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHH
Confidence 689999999999 9999999999999999998876 8898888877665
No 95
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.92 E-value=5.3e-09 Score=94.00 Aligned_cols=38 Identities=16% Similarity=0.372 Sum_probs=32.8
Q ss_pred EEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCC
Q psy1110 120 LVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRH 159 (366)
Q Consensus 120 lV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~ 159 (366)
+|.||++||++|+++.|.+++++++|. +.++.|++++.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~ 110 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQ 110 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCC
Confidence 777999999999999999999999984 67777776643
No 96
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.92 E-value=5.3e-09 Score=89.32 Aligned_cols=58 Identities=24% Similarity=0.406 Sum_probs=55.0
Q ss_pred eeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhCCCCCC
Q psy1110 268 GILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTEPP 325 (366)
Q Consensus 268 v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~~~~~~ 325 (366)
+.++++|.+.+..++.+|+|.++|||++|++|+.+.+..|.++.+.+.+||.+....+
T Consensus 70 v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk~v~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 70 WQVAIADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred eEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEEEEEeCcCCHHHHHHHHHHHhcCc
Confidence 7899999999999999999999999999999999999999999999999999888755
No 97
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.90 E-value=1.8e-09 Score=90.94 Aligned_cols=43 Identities=19% Similarity=0.292 Sum_probs=38.0
Q ss_pred cCCeEEEEEECCCChhhhcccHHHHHHHHHHhcc-ccEEEeecc
Q psy1110 115 EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ-RAYYGMGML 157 (366)
Q Consensus 115 ~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~-v~~~~v~~~ 157 (366)
.+++++|.||++||++|.+..|.+++++++|++. +.++.|++.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~ 65 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSP 65 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccC
Confidence 5789999999999999999999999999999865 777777653
No 98
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.88 E-value=5.3e-09 Score=95.67 Aligned_cols=44 Identities=11% Similarity=0.148 Sum_probs=40.3
Q ss_pred cCCeEEEEEECCCChhhhcccHHHHHHHHHHhcc-ccEEEeeccC
Q psy1110 115 EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ-RAYYGMGMLR 158 (366)
Q Consensus 115 ~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~-v~~~~v~~~~ 158 (366)
.+++++|.|||+||++|++.+|.+.+++++|.++ +.++.|++++
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~ 82 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQ 82 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchh
Confidence 5799999999999999999999999999999876 8999999864
No 99
>PLN02412 probable glutathione peroxidase
Probab=98.87 E-value=4.4e-09 Score=93.46 Aligned_cols=44 Identities=16% Similarity=0.128 Sum_probs=40.3
Q ss_pred cCCeEEEEEECCCChhhhcccHHHHHHHHHHhcc-ccEEEeeccC
Q psy1110 115 EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ-RAYYGMGMLR 158 (366)
Q Consensus 115 ~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~-v~~~~v~~~~ 158 (366)
.+++++|.||++||++|++..|.+.+++++|.+. +.++.|+++.
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~ 72 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQ 72 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccc
Confidence 4699999999999999999999999999999976 8999999864
No 100
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.86 E-value=7.7e-09 Score=83.13 Aligned_cols=45 Identities=31% Similarity=0.557 Sum_probs=40.0
Q ss_pred cCCeEEEEEECCCChhhhcccHHHHHHHHHHhc-cccEEEeeccCC
Q psy1110 115 EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQ-QRAYYGMGMLRH 159 (366)
Q Consensus 115 ~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~-~v~~~~v~~~~~ 159 (366)
.+++++|.||++||++|+...+.+.++.+++.. .+.++.++++..
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~ 63 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDD 63 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCC
Confidence 378999999999999999999999999999973 488999988764
No 101
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.84 E-value=5.8e-09 Score=90.95 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=38.4
Q ss_pred cCCeEEEEEECCCChhhhcccHHHHHHHHHHhcc-ccEEEeeccC
Q psy1110 115 EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ-RAYYGMGMLR 158 (366)
Q Consensus 115 ~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~-v~~~~v~~~~ 158 (366)
.+++++|.|||+||+ |....|.+.+++++|.+. +.++.|+++.
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~ 64 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQ 64 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCc
Confidence 479999999999999 999999999999999765 8888888754
No 102
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.84 E-value=5.5e-09 Score=97.94 Aligned_cols=44 Identities=16% Similarity=0.132 Sum_probs=40.4
Q ss_pred cCCeEEEEEECCCChhhhcccHHHHHHHHHHhcc-ccEEEeeccC
Q psy1110 115 EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ-RAYYGMGMLR 158 (366)
Q Consensus 115 ~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~-v~~~~v~~~~ 158 (366)
.+++++|.|||+||++|....|.+.+++++|+++ +.++.|+++.
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~ 142 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQ 142 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEeccc
Confidence 4799999999999999999999999999999876 8999999864
No 103
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.75 E-value=1.8e-08 Score=75.24 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=27.0
Q ss_pred eeEEEEecccccccccccccccCCeEEEecCCcee
Q psy1110 268 GILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVA 302 (366)
Q Consensus 268 v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~ 302 (366)
+.+..+|.+++.++..++++.++||+++ +|+.+
T Consensus 31 i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~~ 63 (67)
T cd02973 31 ISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKVE 63 (67)
T ss_pred eEEEEEEcccCHhHHHHcCCcccCEEEE--CCEEE
Confidence 5677788888888899999999999987 67643
No 104
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.73 E-value=2.8e-08 Score=86.68 Aligned_cols=43 Identities=14% Similarity=0.086 Sum_probs=39.1
Q ss_pred cCCeEEEEEECCCChhhhcccHHHHHHHHHHhcc-ccEEEeecc
Q psy1110 115 EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ-RAYYGMGML 157 (366)
Q Consensus 115 ~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~-v~~~~v~~~ 157 (366)
.+++++|.|||+||++|++..|.+.+++++|.++ +.++.|++.
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~ 64 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCN 64 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEecc
Confidence 5788999999999999999999999999999875 889999874
No 105
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.69 E-value=7.5e-08 Score=87.24 Aligned_cols=39 Identities=28% Similarity=0.409 Sum_probs=32.0
Q ss_pred cCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEee
Q psy1110 115 EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMG 155 (366)
Q Consensus 115 ~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~ 155 (366)
.+++++|+||++||++|++..|.+.++++.+. +.++.++
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is 111 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMIS 111 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEe
Confidence 57899999999999999999999999887643 3455555
No 106
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.67 E-value=9e-08 Score=79.38 Aligned_cols=53 Identities=11% Similarity=0.184 Sum_probs=42.0
Q ss_pred eEEEEecc--cccccccccccccCCeEEEec--CCceeeecCCCCCHHHHHHHHhCC
Q psy1110 269 ILAAVDVT--REKSLGKRFDIKGFPTLKYFR--AGSVAFDAGHLRDASRLVEFMRDP 321 (366)
Q Consensus 269 ~~a~vd~~--~~~~l~~~~~I~~~Ptl~~fk--~G~~~~~~~g~~~~e~l~~fi~~~ 321 (366)
++.++|.+ +...++..|++.++|+++++. +|+.+.+..|..+.+.+++.|++.
T Consensus 54 v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~ 110 (114)
T cd02958 54 IFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEF 110 (114)
T ss_pred EEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHH
Confidence 34444443 345678899999999999993 799999999999999999888754
No 107
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.64 E-value=8.4e-08 Score=86.45 Aligned_cols=44 Identities=16% Similarity=0.102 Sum_probs=37.1
Q ss_pred cCCeE-EEEEECCCChhhhcccHHHHHHHHHHhcc-ccEEEeeccC
Q psy1110 115 EESSV-LVMFYAPWCGHCKKLKPEYEEAAATMKQQ-RAYYGMGMLR 158 (366)
Q Consensus 115 ~~k~v-lV~F~a~wC~~Ck~~~p~~e~la~~~~~~-v~~~~v~~~~ 158 (366)
.++++ ++.|||+||++|++.+|.+.+++++|.+. +.++.|+++.
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~ 84 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQ 84 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEeccc
Confidence 46654 45669999999999999999999999875 8899998763
No 108
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.63 E-value=8.7e-08 Score=86.55 Aligned_cols=40 Identities=10% Similarity=0.162 Sum_probs=31.5
Q ss_pred cccccccccccccCCeE-EEe-cCCceeeecCCCCCHHHHHH
Q psy1110 277 REKSLGKRFDIKGFPTL-KYF-RAGSVAFDAGHLRDASRLVE 316 (366)
Q Consensus 277 ~~~~l~~~~~I~~~Ptl-~~f-k~G~~~~~~~g~~~~e~l~~ 316 (366)
.+..+...|++++.|+. +++ ++|+++.++.|..+.+++-+
T Consensus 133 ~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 133 DKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQT 174 (184)
T ss_pred CcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHH
Confidence 35567789999999765 444 89999999999988776544
No 109
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.61 E-value=4.1e-08 Score=82.20 Aligned_cols=75 Identities=13% Similarity=0.140 Sum_probs=57.5
Q ss_pred CcccCCCCCCchHHHhhcCC-CCeEEEEeeecc---cCCcchhccCCcc----ceEEeeecCe--eeEeecCC-ccHHHH
Q psy1110 5 GWGTLNKEDTSPLAKEIVKP-KAITLGLIERLT---EKADPVCTREKAK----KKVRRQKNAE--VKYVYENG-NTKDKI 73 (366)
Q Consensus 5 ~~~~~~~~~~~~la~e~~~~-~~I~~~~Vdc~~---~~~~~lc~~~~I~----Pti~~f~~g~--~~~~y~g~-r~~~~i 73 (366)
.|+.- .+....||.++++. ..|.+|+|||.. ....+||.++||+ |||++|++|. ....|+|+ |+.++|
T Consensus 30 Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~l 108 (116)
T cd03007 30 PYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFHGGDFENPVPYSGADVTVDAL 108 (116)
T ss_pred CCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHH
Confidence 45542 23456788888653 459999999942 1234899999995 9999999885 45789996 999999
Q ss_pred HHHHhCc
Q psy1110 74 IEFVRNP 80 (366)
Q Consensus 74 ~~fi~~~ 80 (366)
++||.+.
T Consensus 109 v~~v~~~ 115 (116)
T cd03007 109 QRFLKGN 115 (116)
T ss_pred HHHHHhc
Confidence 9999764
No 110
>KOG0913|consensus
Probab=98.56 E-value=2.7e-08 Score=91.41 Aligned_cols=104 Identities=25% Similarity=0.455 Sum_probs=90.5
Q ss_pred CceEEecchhhhhhhccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceeeeeecCCCc
Q psy1110 99 SEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGE 178 (366)
Q Consensus 99 ~~v~~l~~~~~~~~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~~l~~~~G~ 178 (366)
+.+..++.+|+..+++ +.+++.|+|+||+.|+.++|+|+..+.--.+
T Consensus 24 s~~~~~~eenw~~~l~--gewmi~~~ap~~psc~~~~~~~~~~a~~s~d------------------------------- 70 (248)
T KOG0913|consen 24 SKLTRIDEENWKELLT--GEWMIEFGAPWCPSCSDLIPHLENFATVSLD------------------------------- 70 (248)
T ss_pred ceeEEecccchhhhhc--hHHHHHhcCCCCccccchHHHHhccCCccCC-------------------------------
Confidence 4789999999999886 5689999999999999999999988753221
Q ss_pred ccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccCC
Q psy1110 179 PTTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINS 258 (366)
Q Consensus 179 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~~ 258 (366)
T Consensus 71 -------------------------------------------------------------------------------- 70 (248)
T KOG0913|consen 71 -------------------------------------------------------------------------------- 70 (248)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccceeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhCCCC
Q psy1110 259 GSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTE 323 (366)
Q Consensus 259 ~~~~~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~~~~ 323 (366)
..+.++++|.+.+.-+..+|-++..|||.=.++|. .-+|.|.|+..++++|+...-.
T Consensus 71 -------L~v~va~VDvt~npgLsGRF~vtaLptIYHvkDGe-FrrysgaRdk~dfisf~~~r~w 127 (248)
T KOG0913|consen 71 -------LGVKVAKVDVTTNPGLSGRFLVTALPTIYHVKDGE-FRRYSGARDKNDFISFEEHREW 127 (248)
T ss_pred -------CceeEEEEEEEeccccceeeEEEecceEEEeeccc-cccccCcccchhHHHHHHhhhh
Confidence 12889999999999999999999999999999998 5699999999999999975443
No 111
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.56 E-value=2.1e-07 Score=74.28 Aligned_cols=44 Identities=9% Similarity=-0.083 Sum_probs=35.3
Q ss_pred eeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHH
Q psy1110 268 GILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLV 315 (366)
Q Consensus 268 v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~ 315 (366)
+.+..+|.+...+++.+|+|.++||+++ +|+.+. .|..+.++++
T Consensus 44 i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~--~G~~~~~e~~ 87 (89)
T cd03026 44 IEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFG--FGRMTLEEIL 87 (89)
T ss_pred ceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEE--eCCCCHHHHh
Confidence 6678888888889999999999999976 888655 4766666654
No 112
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.52 E-value=1.5e-07 Score=79.35 Aligned_cols=63 Identities=22% Similarity=0.375 Sum_probs=54.0
Q ss_pred chHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHHhCc
Q psy1110 15 SPLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFVRNP 80 (366)
Q Consensus 15 ~~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi~~~ 80 (366)
..+|.++-+.++|+|++|||+++ .+||.++||+ |||.+|++|+.. .|.|.++.+.|++|+.+.
T Consensus 54 ~~~aa~~l~~~~v~~~kVD~d~~--~~La~~~~I~~iPTl~lfk~G~~v-~~~G~~~~~~l~~~l~~~ 118 (120)
T cd03065 54 LELAAQVLEDKGIGFGLVDSKKD--AKVAKKLGLDEEDSIYVFKDDEVI-EYDGEFAADTLVEFLLDL 118 (120)
T ss_pred HHHHHHHhhcCCCEEEEEeCCCC--HHHHHHcCCccccEEEEEECCEEE-EeeCCCCHHHHHHHHHHH
Confidence 46777774457899999999664 5999999999 999999999855 499999999999999753
No 113
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.51 E-value=3.9e-07 Score=77.74 Aligned_cols=35 Identities=17% Similarity=0.370 Sum_probs=26.9
Q ss_pred ccCCeEEEEEECCCChhhhcccHHH---HHHHHHHhcc
Q psy1110 114 QEESSVLVMFYAPWCGHCKKLKPEY---EEAAATMKQQ 148 (366)
Q Consensus 114 ~~~k~vlV~F~a~wC~~Ck~~~p~~---e~la~~~~~~ 148 (366)
+++|+++|+|+++||++|+++.... .++++..+.+
T Consensus 21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~ 58 (130)
T cd02960 21 KSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQED 58 (130)
T ss_pred HCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhC
Confidence 5699999999999999999998864 3444444344
No 114
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.50 E-value=3.9e-07 Score=77.44 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=38.8
Q ss_pred cCCeEEEEEE-CCCChhhhcccHHHHHHHHHHhcc-ccEEEeeccCCc
Q psy1110 115 EESSVLVMFY-APWCGHCKKLKPEYEEAAATMKQQ-RAYYGMGMLRHR 160 (366)
Q Consensus 115 ~~k~vlV~F~-a~wC~~Ck~~~p~~e~la~~~~~~-v~~~~v~~~~~~ 160 (366)
.+++++|.|| +.||+.|....+.+.++++++.+. +.++.|+++...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~ 69 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVE 69 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHH
Confidence 4789999999 589999999999999999998764 888888876543
No 115
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.49 E-value=2e-07 Score=77.73 Aligned_cols=59 Identities=10% Similarity=0.104 Sum_probs=50.8
Q ss_pred chHHHhhcCCCCeEEEEeeecccCCcchh-ccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHH
Q psy1110 15 SPLAKEIVKPKAITLGLIERLTEKADPVC-TREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFV 77 (366)
Q Consensus 15 ~~la~e~~~~~~I~~~~Vdc~~~~~~~lc-~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi 77 (366)
..+|+++. +.+.|++|||+++. ++| ++++|+ |||++|++|.....|.|.++.+.|+.|+
T Consensus 52 ~~la~~~~--~~v~~~~Vd~d~~~--~l~~~~~~I~~~PTl~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 52 EQVAQKLS--DQVLFVAINCWWPQ--GKCRKQKHFFYFPVIHLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred HHHHHHhc--CCeEEEEEECCCCh--HHHHHhcCCcccCEEEEEECCccceEEeCCCCHHHHHhhC
Confidence 35677765 56999999997655 899 589999 9999999998889999999999999885
No 116
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.49 E-value=3.9e-07 Score=72.17 Aligned_cols=33 Identities=39% Similarity=0.746 Sum_probs=30.6
Q ss_pred CCeEEEEEECCCChhhhcccHHHHHHHHHHhcc
Q psy1110 116 ESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148 (366)
Q Consensus 116 ~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~ 148 (366)
++++++.||++||++|+.+.|.+.++++.+...
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~ 64 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGD 64 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCC
Confidence 789999999999999999999999999998765
No 117
>smart00594 UAS UAS domain.
Probab=98.47 E-value=7.6e-07 Score=75.02 Aligned_cols=42 Identities=10% Similarity=0.165 Sum_probs=34.7
Q ss_pred cccccccccccccCCeEEEe-cCC-----ceeeecCCCCCHHHHHHHH
Q psy1110 277 REKSLGKRFDIKGFPTLKYF-RAG-----SVAFDAGHLRDASRLVEFM 318 (366)
Q Consensus 277 ~~~~l~~~~~I~~~Ptl~~f-k~G-----~~~~~~~g~~~~e~l~~fi 318 (366)
+...++..|+++++|+++++ ++| .++.+..|..+.++|++++
T Consensus 74 eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 74 EGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred hHHHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 34578899999999999988 555 3567889999999999876
No 118
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.47 E-value=6.3e-07 Score=79.58 Aligned_cols=44 Identities=9% Similarity=0.182 Sum_probs=38.7
Q ss_pred cCCeEEEEEECCC-ChhhhcccHHHHHHHHHHhccccEEEeeccCC
Q psy1110 115 EESSVLVMFYAPW-CGHCKKLKPEYEEAAATMKQQRAYYGMGMLRH 159 (366)
Q Consensus 115 ~~k~vlV~F~a~w-C~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~ 159 (366)
.+++++|.||++| |++|....|.+.++++++. .+.++.++++..
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~ 87 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLP 87 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCH
Confidence 4789999999999 9999999999999999984 688888887653
No 119
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.42 E-value=1e-06 Score=78.11 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=39.8
Q ss_pred cCCeEEEEEECCCChhhhcccHHHHHHHHHHhc-cccEEEeeccC
Q psy1110 115 EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQ-QRAYYGMGMLR 158 (366)
Q Consensus 115 ~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~-~v~~~~v~~~~ 158 (366)
++++++|+||++||+.|....+.+.+++++|.+ .+.++.|+++.
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~ 68 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSND 68 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCc
Confidence 578999999999999999999999999999975 48899998765
No 120
>KOG2501|consensus
Probab=98.42 E-value=2.5e-07 Score=80.84 Aligned_cols=47 Identities=19% Similarity=0.353 Sum_probs=40.6
Q ss_pred cCCeEEEEEECCCChhhhcccHHHHHHHHHHhcc---ccEEEeeccCCcc
Q psy1110 115 EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ---RAYYGMGMLRHRP 161 (366)
Q Consensus 115 ~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~---v~~~~v~~~~~~~ 161 (366)
.++.|.++|.|.||++|+.|.|.+.++++..+++ ..++.|+.|.+..
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~ 81 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEE 81 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHH
Confidence 3699999999999999999999999999998887 7777777766543
No 121
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.41 E-value=9e-07 Score=78.77 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=39.4
Q ss_pred cCCeEEEEEE-CCCChhhhcccHHHHHHHHHHhcc-ccEEEeeccCC
Q psy1110 115 EESSVLVMFY-APWCGHCKKLKPEYEEAAATMKQQ-RAYYGMGMLRH 159 (366)
Q Consensus 115 ~~k~vlV~F~-a~wC~~Ck~~~p~~e~la~~~~~~-v~~~~v~~~~~ 159 (366)
.++.++|.|| +.||++|....+.+.+++++|.+. +.++.|+++..
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~ 74 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSH 74 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCH
Confidence 4689999999 899999999999999999999765 88888887654
No 122
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.41 E-value=3.9e-07 Score=71.14 Aligned_cols=38 Identities=37% Similarity=0.611 Sum_probs=29.7
Q ss_pred hhhccCCeEEEEEECCCChhhhcccHHH---HHHHHHHhcc
Q psy1110 111 LVIQEESSVLVMFYAPWCGHCKKLKPEY---EEAAATMKQQ 148 (366)
Q Consensus 111 ~~i~~~k~vlV~F~a~wC~~Ck~~~p~~---e~la~~~~~~ 148 (366)
+..+++++++|+|+++||++|+.+...+ .++.+.+.++
T Consensus 12 ~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~ 52 (82)
T PF13899_consen 12 EAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKN 52 (82)
T ss_dssp HHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHC
T ss_pred HHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCC
Confidence 3446699999999999999999998876 4555545555
No 123
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.41 E-value=1.2e-06 Score=91.92 Aligned_cols=167 Identities=11% Similarity=0.105 Sum_probs=118.2
Q ss_pred CCCchHHHhhcCC-CCeEEEEeeecccCCcchhccCCcc--ceEEeee-cCe-eeEeecCCccHHHHHHHHhCcCCcchh
Q psy1110 12 EDTSPLAKEIVKP-KAITLGLIERLTEKADPVCTREKAK--KKVRRQK-NAE-VKYVYENGNTKDKIIEFVRNPQATSEE 86 (366)
Q Consensus 12 ~~~~~la~e~~~~-~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~-~g~-~~~~y~g~r~~~~i~~fi~~~~~~~~~ 86 (366)
+++..+.+|++.- .+|++-.+|...++ ++..+++|. |++.+++ +++ .-..|.|-..-.+|.+|+......+.
T Consensus 382 ~e~~~~l~e~~~~s~~i~~~~~~~~~~~--~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G~Ef~s~i~~i~~~~~- 458 (555)
T TIGR03143 382 AELQSFLGEFASLSEKLNSEAVNRGEEP--ESETLPKITKLPTVALLDDDGNYTGLKFHGVPSGHELNSFILALYNAAG- 458 (555)
T ss_pred HHHHHHHHHHHhcCCcEEEEEeccccch--hhHhhcCCCcCCEEEEEeCCCcccceEEEecCccHhHHHHHHHHHHhcC-
Confidence 4466777777743 57999888886655 899999998 9999995 443 23778774444455555544333311
Q ss_pred hhccCCCcCCCCCceEEecchhhhhhhccCCeEEEE-EECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccc
Q psy1110 87 VKKKEQDWADTESEVVHLTDDNFDLVIQEESSVLVM-FYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASN 165 (366)
Q Consensus 87 ~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~k~vlV~-F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~ 165 (366)
.-..|+.+..+.+-+=++++-|. |..++|++|......+++++....
T Consensus 459 -------------~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~------------------- 506 (555)
T TIGR03143 459 -------------PGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP------------------- 506 (555)
T ss_pred -------------CCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-------------------
Confidence 12345555454443336676554 579999999988888877776532
Q ss_pred cceeeeeecCCCcccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceee
Q psy1110 166 VAVVSSLRNKNGEPTTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELR 245 (366)
Q Consensus 166 ~~v~~~l~~~~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 245 (366)
T Consensus 507 -------------------------------------------------------------------------------- 506 (555)
T TIGR03143 507 -------------------------------------------------------------------------------- 506 (555)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccccccccccCCCCCCCCccceeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHH
Q psy1110 246 QVGTGKRIKSINSGSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFM 318 (366)
Q Consensus 246 ~c~~c~~~~p~~~~~~~~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi 318 (366)
++..-.+|.+.+.++..+|+|.++|++++ ||+.+ +.|..+.+++++||
T Consensus 507 ---------------------~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~--~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 507 ---------------------NVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQV--YFGKKTIEEMLELI 554 (555)
T ss_pred ---------------------CceEEEEECcccHHHHHhCCceecCEEEE--CCEEE--EeeCCCHHHHHHhh
Confidence 25566788899999999999999999999 88744 55877999999886
No 124
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.40 E-value=3e-07 Score=76.28 Aligned_cols=46 Identities=22% Similarity=0.508 Sum_probs=41.3
Q ss_pred cCCeEEEEEECC-CChhhhcccHHHHHHHHHHhcc-ccEEEeeccCCc
Q psy1110 115 EESSVLVMFYAP-WCGHCKKLKPEYEEAAATMKQQ-RAYYGMGMLRHR 160 (366)
Q Consensus 115 ~~k~vlV~F~a~-wC~~Ck~~~p~~e~la~~~~~~-v~~~~v~~~~~~ 160 (366)
.+++++|.||++ ||++|+...+.+.++.++|+.. +.++.|+.+...
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~ 71 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPE 71 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHH
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccccccc
Confidence 579999999999 9999999999999999999875 889999886654
No 125
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.40 E-value=3.8e-07 Score=73.61 Aligned_cols=59 Identities=15% Similarity=0.250 Sum_probs=51.2
Q ss_pred chHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHH
Q psy1110 15 SPLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFV 77 (366)
Q Consensus 15 ~~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi 77 (366)
..+|+++. +.++|++|||+. +.++|.+++|+ ||+.+|++|.....|.|.++.++|.+|+
T Consensus 41 ~~~a~~~~--~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 41 REFAKEMD--GVIRIGAVNCGD--DRMLCRSQGVNSYPSLYVFPSGMNPEKYYGDRSKESLVKFA 101 (101)
T ss_pred HHHHHHhc--CceEEEEEeCCc--cHHHHHHcCCCccCEEEEEcCCCCcccCCCCCCHHHHHhhC
Confidence 35777776 679999999966 45999999999 9999999998788999999999999884
No 126
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.38 E-value=1.4e-06 Score=75.70 Aligned_cols=45 Identities=18% Similarity=0.283 Sum_probs=38.2
Q ss_pred cCCeEEEEEECC-CChhhhcccHHHHHHHHHHhcc-ccEEEeeccCC
Q psy1110 115 EESSVLVMFYAP-WCGHCKKLKPEYEEAAATMKQQ-RAYYGMGMLRH 159 (366)
Q Consensus 115 ~~k~vlV~F~a~-wC~~Ck~~~p~~e~la~~~~~~-v~~~~v~~~~~ 159 (366)
.+++++|.||+. ||..|....+.+.++++.+.+. +.++.|+.+..
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~ 75 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKP 75 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 568999999987 5778999999999999999765 88888887644
No 127
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.37 E-value=5.2e-07 Score=93.02 Aligned_cols=54 Identities=28% Similarity=0.362 Sum_probs=45.8
Q ss_pred eeEEEEeccccc----ccccccccccCCeEEEec-CCceeeecCCCCCHHHHHHHHhCC
Q psy1110 268 GILAAVDVTREK----SLGKRFDIKGFPTLKYFR-AGSVAFDAGHLRDASRLVEFMRDP 321 (366)
Q Consensus 268 v~~a~vd~~~~~----~l~~~~~I~~~Ptl~~fk-~G~~~~~~~g~~~~e~l~~fi~~~ 321 (366)
++..+.|.++++ .+-+++++-|.|++++|. +|+......|..+.+.+++++++.
T Consensus 509 ~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 509 VVLLQADVTANDPAITALLKRLGVFGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred eEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 677888877665 678899999999999996 787777789999999999999764
No 128
>KOG0914|consensus
Probab=98.36 E-value=6.6e-07 Score=81.57 Aligned_cols=54 Identities=15% Similarity=0.316 Sum_probs=45.0
Q ss_pred CCCCCceEEe-cchhhhhhhcc--CCeEEEEEECCCChhhhcccHHHHHHHHHHhcc
Q psy1110 95 ADTESEVVHL-TDDNFDLVIQE--ESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148 (366)
Q Consensus 95 ~~~~~~v~~l-~~~~~~~~i~~--~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~ 148 (366)
-+.++.+.-+ +.+.+++.+.+ ...|+|.|||.|...|+.+.|.+.+|+.+|..+
T Consensus 120 y~gpe~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~ 176 (265)
T KOG0914|consen 120 YSGPETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNN 176 (265)
T ss_pred cCCchheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCC
Confidence 3456678888 55667777744 578999999999999999999999999999776
No 129
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.35 E-value=8e-07 Score=70.91 Aligned_cols=61 Identities=20% Similarity=0.312 Sum_probs=54.0
Q ss_pred chHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHHhC
Q psy1110 15 SPLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFVRN 79 (366)
Q Consensus 15 ~~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi~~ 79 (366)
..+|+++. .+|.++.|||.. ..++|++++|+ ||+.+|++|.....|.|.++.++|.+||++
T Consensus 40 ~~~~~~~~--~~v~~~~vd~~~--~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 40 EKLAKEYK--DNVKFAKVDCDE--NKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp HHHHHHTT--TTSEEEEEETTT--SHHHHHHTTCSSSSEEEEEETTEEEEEEESSSSHHHHHHHHHH
T ss_pred cccccccc--cccccchhhhhc--cchhhhccCCCCCCEEEEEECCcEEEEEECCCCHHHHHHHHHc
Confidence 45677766 399999999955 56999999999 999999999988999999999999999975
No 130
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.29 E-value=2.8e-06 Score=76.87 Aligned_cols=46 Identities=17% Similarity=0.247 Sum_probs=40.2
Q ss_pred cCCeEEEEEE-CCCChhhhcccHHHHHHHHHHhcc-ccEEEeeccCCc
Q psy1110 115 EESSVLVMFY-APWCGHCKKLKPEYEEAAATMKQQ-RAYYGMGMLRHR 160 (366)
Q Consensus 115 ~~k~vlV~F~-a~wC~~Ck~~~p~~e~la~~~~~~-v~~~~v~~~~~~ 160 (366)
.+++++|.|| ++||++|....+.+.++.+++... +.++.|+++...
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~ 77 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHF 77 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHH
Confidence 4789999999 999999999999999999999754 888899887643
No 131
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.28 E-value=1.1e-06 Score=71.81 Aligned_cols=60 Identities=18% Similarity=0.298 Sum_probs=49.3
Q ss_pred hHHHhhcC----CCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCe-eeEeecCCccHHHHHHHH
Q psy1110 16 PLAKEIVK----PKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAE-VKYVYENGNTKDKIIEFV 77 (366)
Q Consensus 16 ~la~e~~~----~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~-~~~~y~g~r~~~~i~~fi 77 (366)
.+|+++.+ .+.+.+++|||+.+ .++|.++||+ ||+.+|++|. ....|.|.++.++|++|+
T Consensus 42 ~~a~~~~~~~~~~~~~~~~~vd~d~~--~~l~~~~~v~~~Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 42 EAAAKIKEEFPDAGKVVWGKVDCDKE--SDIADRYRINKYPTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred HHHHHHhhccCCCCcEEEEEEECCCC--HHHHHhCCCCcCCEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 45555532 13699999999664 5999999999 9999999987 458999999999999986
No 132
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.25 E-value=3.7e-06 Score=72.27 Aligned_cols=42 Identities=12% Similarity=0.286 Sum_probs=36.8
Q ss_pred CeEEEEEE-CCCChhhhcccHHHHHHHHHHhcc-ccEEEeeccC
Q psy1110 117 SSVLVMFY-APWCGHCKKLKPEYEEAAATMKQQ-RAYYGMGMLR 158 (366)
Q Consensus 117 k~vlV~F~-a~wC~~Ck~~~p~~e~la~~~~~~-v~~~~v~~~~ 158 (366)
++++|.|| ++||+.|....|.+.++++++.+. +.++.|+.+.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~ 72 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDS 72 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence 78888888 899999999999999999999754 8888888764
No 133
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.22 E-value=3.3e-06 Score=72.30 Aligned_cols=44 Identities=7% Similarity=0.141 Sum_probs=38.4
Q ss_pred cCCeEEEEEECCC-ChhhhcccHHHHHHHHHHhccccEEEeeccCC
Q psy1110 115 EESSVLVMFYAPW-CGHCKKLKPEYEEAAATMKQQRAYYGMGMLRH 159 (366)
Q Consensus 115 ~~k~vlV~F~a~w-C~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~ 159 (366)
.+++++|.||+.| |++|+...|.+.++++++. .+.++.|+++..
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~ 69 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLP 69 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCH
Confidence 4789999999999 6999999999999999985 688999987653
No 134
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.21 E-value=1.8e-06 Score=69.81 Aligned_cols=59 Identities=15% Similarity=0.339 Sum_probs=50.1
Q ss_pred chHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecC-eeeEeecCCcc-HHHHHHHH
Q psy1110 15 SPLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNA-EVKYVYENGNT-KDKIIEFV 77 (366)
Q Consensus 15 ~~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g-~~~~~y~g~r~-~~~i~~fi 77 (366)
..+|+++. +.+.+++|||.+ +.++|.+++|+ ||+.+|++| +....|.|.++ .++|.+|+
T Consensus 42 ~~~~~~~~--~~~~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 42 RKAARALK--GKVKVGSVDCQK--YESLCQQANIRAYPTIRLYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred HHHHHHhc--CCcEEEEEECCc--hHHHHHHcCCCcccEEEEEcCCCCCceEccCCCCCHHHHHhhC
Confidence 35666664 679999999966 55999999999 999999998 77889999886 99999885
No 135
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.20 E-value=7e-05 Score=72.91 Aligned_cols=114 Identities=17% Similarity=0.308 Sum_probs=76.5
Q ss_pred hHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHHhCcCCcchhhhccCCC
Q psy1110 16 PLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFVRNPQATSEEVKKKEQD 93 (366)
Q Consensus 16 ~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi~~~~~~~~~~~~~~~~ 93 (366)
+||..+-...+|.||.||. .+...|++++|+. ++|.+|+.| ...+|.|.|+.+.|++|+......
T Consensus 80 ELaAQVlE~~gigfg~VD~--~Kd~klAKKLgv~E~~SiyVfkd~-~~IEydG~~saDtLVeFl~dl~ed---------- 146 (383)
T PF01216_consen 80 ELAAQVLEDKGIGFGMVDS--KKDAKLAKKLGVEEEGSIYVFKDG-EVIEYDGERSADTLVEFLLDLLED---------- 146 (383)
T ss_dssp HHHHHHCGGCTEEEEEEET--TTTHHHHHHHT--STTEEEEEETT-EEEEE-S--SHHHHHHHHHHHHSS----------
T ss_pred HHHHHhccccCcceEEecc--HHHHHHHHhcCccccCcEEEEECC-cEEEecCccCHHHHHHHHHHhccc----------
Confidence 4555555578999999999 4455999999999 999999976 488999999999999999887765
Q ss_pred cCCCCCceEEecchh-hhhhhc-cCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccE
Q psy1110 94 WADTESEVVHLTDDN-FDLVIQ-EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAY 151 (366)
Q Consensus 94 ~~~~~~~v~~l~~~~-~~~~i~-~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~ 151 (366)
.|..++++. +..+-+ .+.+-+|-|+.+--. .....|+++|..|...++|
T Consensus 147 ------PVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s---~~yk~FeeAAe~F~p~IkF 197 (383)
T PF01216_consen 147 ------PVEIINNKHELKAFERIEDDIKLIGYFKSEDS---EHYKEFEEAAEHFQPYIKF 197 (383)
T ss_dssp ------SEEEE-SHHHHHHHHH--SS-EEEEE-SSTTS---HHHHHHHHHHHHCTTTSEE
T ss_pred ------chhhhcChhhhhhhhhcccceeEEEEeCCCCc---HHHHHHHHHHHhhcCceeE
Confidence 577777643 322222 235778887776422 1345678888888776444
No 136
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.19 E-value=3e-06 Score=72.46 Aligned_cols=46 Identities=11% Similarity=0.195 Sum_probs=36.5
Q ss_pred CCeEEEEEECCCChhhhcccHHHHHHHHHHhcc-ccEEEeeccCCcc
Q psy1110 116 ESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ-RAYYGMGMLRHRP 161 (366)
Q Consensus 116 ~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~-v~~~~v~~~~~~~ 161 (366)
+..+++.||++||++|+...|.+.++++++.+. +.++.|+++....
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~ 70 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEK 70 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHH
Confidence 344444456999999999999999999999754 8899998876543
No 137
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.14 E-value=2.1e-06 Score=73.11 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=39.7
Q ss_pred cCCeEEEEEECCCChh-hhcccHHHHHHHHHHhcc----ccEEEeeccCC
Q psy1110 115 EESSVLVMFYAPWCGH-CKKLKPEYEEAAATMKQQ----RAYYGMGMLRH 159 (366)
Q Consensus 115 ~~k~vlV~F~a~wC~~-Ck~~~p~~e~la~~~~~~----v~~~~v~~~~~ 159 (366)
.+++++|.||++||++ |....+.+.++++.+..+ +.++.|+++..
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~ 70 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPE 70 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCC
Confidence 5789999999999997 999999999999999763 88888888654
No 138
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.12 E-value=2e-05 Score=76.59 Aligned_cols=81 Identities=22% Similarity=0.359 Sum_probs=60.2
Q ss_pred eeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhCCCCCCCCCCCCCCCCCCCCeeEEech-
Q psy1110 268 GILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTEPPPPPPPEPAWAEEPSEVYHLGA- 346 (366)
Q Consensus 268 v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~~~~~~~~~~~~~~~~~~~~~v~~lt~- 346 (366)
+-++.+|..++..+++++++...+++.+|++|+ +..|.|.+.++.|++||.+..+.+ |..++.
T Consensus 91 igfg~VD~~Kd~klAKKLgv~E~~SiyVfkd~~-~IEydG~~saDtLVeFl~dl~edP---------------VeiIn~~ 154 (383)
T PF01216_consen 91 IGFGMVDSKKDAKLAKKLGVEEEGSIYVFKDGE-VIEYDGERSADTLVEFLLDLLEDP---------------VEIINNK 154 (383)
T ss_dssp EEEEEEETTTTHHHHHHHT--STTEEEEEETTE-EEEE-S--SHHHHHHHHHHHHSSS---------------EEEE-SH
T ss_pred cceEEeccHHHHHHHHhcCccccCcEEEEECCc-EEEecCccCHHHHHHHHHHhcccc---------------hhhhcCh
Confidence 789999999999999999999999999999999 557779999999999999999877 888866
Q ss_pred hcHHHHhh-ccCceEEEEe
Q psy1110 347 DNFASTLR-KKKHALVMFY 364 (366)
Q Consensus 347 ~~~~~~~~-~~~~~~v~fy 364 (366)
..+..+-+ +...-+|-|+
T Consensus 155 ~e~~~Fe~ied~~klIGyF 173 (383)
T PF01216_consen 155 HELKAFERIEDDIKLIGYF 173 (383)
T ss_dssp HHHHHHHH--SS-EEEEE-
T ss_pred hhhhhhhhcccceeEEEEe
Confidence 44444443 2346666665
No 139
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.08 E-value=1.2e-05 Score=68.02 Aligned_cols=44 Identities=14% Similarity=0.289 Sum_probs=38.3
Q ss_pred cCCeEEEEEE-CCCChhhhcccHHHHHHHHHHhcc-ccEEEeeccC
Q psy1110 115 EESSVLVMFY-APWCGHCKKLKPEYEEAAATMKQQ-RAYYGMGMLR 158 (366)
Q Consensus 115 ~~k~vlV~F~-a~wC~~Ck~~~p~~e~la~~~~~~-v~~~~v~~~~ 158 (366)
.+++++|.|| +.||..|....|.+.++++++... +.++.|+.+.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~ 66 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDS 66 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 5789999999 689999999999999999999644 8888888764
No 140
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.06 E-value=7.9e-06 Score=65.38 Aligned_cols=62 Identities=18% Similarity=0.266 Sum_probs=52.0
Q ss_pred CchHHHhhcC-CCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHH
Q psy1110 14 TSPLAKEIVK-PKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFV 77 (366)
Q Consensus 14 ~~~la~e~~~-~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi 77 (366)
...+|+++.. ...+.++.|||.. ..++|++++|. ||+.+|++|.....|.|.++.++|.+|+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 38 WEQLAKKFNNENPSVKIAKVDCTQ--HRELCSEFQVRGYPTLLLFKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred HHHHHHHHhccCCcEEEEEEECCC--ChhhHhhcCCCcCCEEEEEeCCCeeeEeeCCCCHHHHHhhC
Confidence 3457777764 2479999999965 44999999999 9999999998778999999999999885
No 141
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.05 E-value=6.7e-06 Score=66.78 Aligned_cols=63 Identities=16% Similarity=0.306 Sum_probs=52.9
Q ss_pred CchHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCe-----eeEeecCCccHHHHHHHHh
Q psy1110 14 TSPLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAE-----VKYVYENGNTKDKIIEFVR 78 (366)
Q Consensus 14 ~~~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~-----~~~~y~g~r~~~~i~~fi~ 78 (366)
...+|+.+. ..+.++.|||..+...++|++++|+ ||+.+|.+|. ....|.|.++.++|++|+.
T Consensus 40 ~~~~a~~~~--~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 40 YAKAAKELD--GLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred HHHHHHHhc--CCceEEEEecCccccHHHHHHcCCCcCCEEEEEeCCCcccccccccccCccCHHHHHHHhC
Confidence 346777776 6799999999774466899999999 9999999885 4578999999999999983
No 142
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.05 E-value=8.6e-06 Score=64.86 Aligned_cols=64 Identities=22% Similarity=0.321 Sum_probs=54.5
Q ss_pred chHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHHhCc
Q psy1110 15 SPLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFVRNP 80 (366)
Q Consensus 15 ~~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi~~~ 80 (366)
..+|..+...+.+.++.+||.+ +..+|.+++|+ |++.+|++|+....|.|.++.++|.+|+.+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~i~~~P~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 36 EKLAKELKGDPDIVLAKVDATA--EKDLASRFGVSGFPTIKFFPKGKKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred HHHHHHhccCCceEEEEEEccc--hHHHHHhCCCCcCCEEEEecCCCcceeecCCCCHHHHHHHHHhc
Confidence 4577777644479999999966 55999999999 9999999887688999999999999999764
No 143
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.04 E-value=1e-05 Score=73.21 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=38.1
Q ss_pred cCCeEEEEEECCCChhhhcccHHHHHHHHHHhcc-ccEEEeeccC
Q psy1110 115 EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ-RAYYGMGMLR 158 (366)
Q Consensus 115 ~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~-v~~~~v~~~~ 158 (366)
.++++||.|||+||+.|+ ..|.+++++++|.+. +.++.+.|++
T Consensus 24 ~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nq 67 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQ 67 (183)
T ss_pred CCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccc
Confidence 579999999999999996 589999999999875 8899999863
No 144
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.04 E-value=1.1e-05 Score=64.60 Aligned_cols=63 Identities=21% Similarity=0.256 Sum_probs=54.0
Q ss_pred chHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHH
Q psy1110 15 SPLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFV 77 (366)
Q Consensus 15 ~~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi 77 (366)
..+++.+...+.+.++.+||....+..+|.+++|+ ||+.+|++|.....|.|..+.++|++|+
T Consensus 40 ~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 40 TKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred HHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCCeeEEeCCCCCHHHHHhhC
Confidence 46677776556799999999774467999999998 9999999998888999999999999885
No 145
>PTZ00062 glutaredoxin; Provisional
Probab=98.03 E-value=2.4e-05 Score=71.85 Aligned_cols=99 Identities=11% Similarity=0.219 Sum_probs=68.9
Q ss_pred hHHHhhcCC-CCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHHhCcCCcchhhhccCC
Q psy1110 16 PLAKEIVKP-KAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFVRNPQATSEEVKKKEQ 92 (366)
Q Consensus 16 ~la~e~~~~-~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi~~~~~~~~~~~~~~~ 92 (366)
++-.+|++. +.++|..||.. ++|. ||+.+|++|.....+.|. +...|.+++........
T Consensus 37 ~vl~~l~~~~~~~~F~~V~~d----------~~V~~vPtfv~~~~g~~i~r~~G~-~~~~~~~~~~~~~~~~~------- 98 (204)
T PTZ00062 37 DVCNALVEDFPSLEFYVVNLA----------DANNEYGVFEFYQNSQLINSLEGC-NTSTLVSFIRGWAQKGS------- 98 (204)
T ss_pred HHHHHHHHHCCCcEEEEEccc----------cCcccceEEEEEECCEEEeeeeCC-CHHHHHHHHHHHcCCCC-------
Confidence 344444422 46999999983 8999 999999999988888874 46778888877665411
Q ss_pred CcCCCCCceEEecchhhhhhhccCCeEEEEE---ECCCChhhhcccHHHHHH
Q psy1110 93 DWADTESEVVHLTDDNFDLVIQEESSVLVMF---YAPWCGHCKKLKPEYEEA 141 (366)
Q Consensus 93 ~~~~~~~~v~~l~~~~~~~~i~~~k~vlV~F---~a~wC~~Ck~~~p~~e~l 141 (366)
. .-..+.+++++++++.++..= +.|||++|++....+.+.
T Consensus 99 --------~-~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~ 141 (204)
T PTZ00062 99 --------S-EDTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSS 141 (204)
T ss_pred --------H-HHHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHc
Confidence 0 012345667777766655554 447999999887777643
No 146
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.01 E-value=1.5e-05 Score=55.88 Aligned_cols=22 Identities=55% Similarity=1.307 Sum_probs=20.4
Q ss_pred EEEEECCCChhhhcccHHHHHH
Q psy1110 120 LVMFYAPWCGHCKKLKPEYEEA 141 (366)
Q Consensus 120 lV~F~a~wC~~Ck~~~p~~e~l 141 (366)
++.||++||++|+++.+.+.++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~ 22 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL 22 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH
Confidence 4789999999999999999998
No 147
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.01 E-value=2.7e-05 Score=70.63 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=39.9
Q ss_pred cCCeEEEEEE-CCCChhhhcccHHHHHHHHHHhcc-ccEEEeeccCCc
Q psy1110 115 EESSVLVMFY-APWCGHCKKLKPEYEEAAATMKQQ-RAYYGMGMLRHR 160 (366)
Q Consensus 115 ~~k~vlV~F~-a~wC~~Ck~~~p~~e~la~~~~~~-v~~~~v~~~~~~ 160 (366)
.++++++.|| +.||+.|....+.+.+++++|.+. +.++.|+++...
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~ 77 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHF 77 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHH
Confidence 4678999999 999999999999999999999765 888888876643
No 148
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.00 E-value=1.3e-05 Score=59.71 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=24.8
Q ss_pred ccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHh
Q psy1110 280 SLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMR 319 (366)
Q Consensus 280 ~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~ 319 (366)
.+.+.+++.++|++++. |+. ..| .+.+.|.+|++
T Consensus 41 ~~~~~~~~~~vP~~~~~--~~~---~~g-~~~~~i~~~i~ 74 (74)
T TIGR02196 41 EVLKVLGQRGVPVIVIG--HKI---IVG-FDPEKLDQLLE 74 (74)
T ss_pred HHHHHhCCCcccEEEEC--CEE---Eee-CCHHHHHHHhC
Confidence 35667899999999984 663 445 36788888764
No 149
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.99 E-value=1.5e-05 Score=64.10 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=49.3
Q ss_pred hHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHHhC
Q psy1110 16 PLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFVRN 79 (366)
Q Consensus 16 ~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi~~ 79 (366)
.+|+.+. ..+|.+++|||+. ..++|.+++|+ ||+.+|++|. ...|.|.++.++|.+|+.+
T Consensus 40 ~l~~~~~-~~~v~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~~~g~-~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 40 EFADWSD-DLGINVAKVDVTQ--EPGLSGRFFVTALPTIYHAKDGV-FRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred HHHHhhc-cCCeEEEEEEccC--CHhHHHHcCCcccCEEEEeCCCC-EEEecCCCCHHHHHHHHhC
Confidence 4555443 3469999999966 44899999999 9999998886 4789999999999999863
No 150
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.98 E-value=1.2e-05 Score=64.47 Aligned_cols=59 Identities=12% Similarity=0.209 Sum_probs=50.3
Q ss_pred chHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecC-eeeEeecCCccHHHHHHHH
Q psy1110 15 SPLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNA-EVKYVYENGNTKDKIIEFV 77 (366)
Q Consensus 15 ~~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g-~~~~~y~g~r~~~~i~~fi 77 (366)
..+|+++. +.+.++.+||.+ +.++|++++|+ ||+.+|.+| .....|.|+++.++|++|+
T Consensus 41 ~~~~~~~~--~~~~~~~id~~~--~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 41 KKAAKALK--GIVKVGAVDADV--HQSLAQQYGVRGFPTIKVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred HHHHHHhc--CCceEEEEECcc--hHHHHHHCCCCccCEEEEECCCCcceeecCCCCCHHHHHHHh
Confidence 45666665 679999999965 45999999999 999999988 4568899999999999997
No 151
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.92 E-value=2.1e-05 Score=67.35 Aligned_cols=65 Identities=9% Similarity=0.046 Sum_probs=54.9
Q ss_pred hHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHHhCcCCc
Q psy1110 16 PLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFVRNPQAT 83 (366)
Q Consensus 16 ~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi~~~~~~ 83 (366)
.||+++. ...+++++||.+++. +++.+|||. ||+.+|++|+....+.|-++.+.+.+|+.+....
T Consensus 60 ELa~e~~-~~~v~~akVDiD~~~--~LA~~fgV~siPTLl~FkdGk~v~~i~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 60 ELLREFP-DYTWQVAIADLEQSE--AIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEP 126 (132)
T ss_pred HHHHHhc-CCceEEEEEECCCCH--HHHHHcCCccCCEEEEEECCEEEEEEeCcCCHHHHHHHHHHHhcC
Confidence 4556653 134999999997655 999999999 9999999999999999999999999999876653
No 152
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=97.91 E-value=6.3e-05 Score=71.86 Aligned_cols=49 Identities=22% Similarity=0.339 Sum_probs=36.7
Q ss_pred CceEEecc-hhhhhhhcc---CCeEEEEEECCCChhhhcccHHHHHHHHHHhc
Q psy1110 99 SEVVHLTD-DNFDLVIQE---ESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQ 147 (366)
Q Consensus 99 ~~v~~l~~-~~~~~~i~~---~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~ 147 (366)
+.+..|+. +.|-+.+.. +..|+|.||-+.+..|..+...|..||.+|..
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~ 177 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE 177 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc
Confidence 46888865 778777743 45799999999999999999999999999855
No 153
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.90 E-value=4.3e-05 Score=70.06 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=37.3
Q ss_pred cCCeEE-EEEECCCChhhhcccHHHHHHHHHHhcc-ccEEEeeccCC
Q psy1110 115 EESSVL-VMFYAPWCGHCKKLKPEYEEAAATMKQQ-RAYYGMGMLRH 159 (366)
Q Consensus 115 ~~k~vl-V~F~a~wC~~Ck~~~p~~e~la~~~~~~-v~~~~v~~~~~ 159 (366)
.++.++ +.||++||+.|....+.+.+++.+|++. +.++.++++..
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~ 72 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSI 72 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence 355554 4689999999999999999999999865 88899988764
No 154
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.89 E-value=2.5e-05 Score=64.45 Aligned_cols=62 Identities=16% Similarity=0.301 Sum_probs=52.2
Q ss_pred chHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHHhC
Q psy1110 15 SPLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFVRN 79 (366)
Q Consensus 15 ~~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi~~ 79 (366)
.++++++.. .++.+++|||..+. .+|.++||+ ||+.+|++|.....+.|.++.+.|.+|+.+
T Consensus 47 ~~l~~~~~~-~~v~~~~vd~d~~~--~l~~~~~V~~~Pt~~i~~~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 47 KEVIQELEP-LGVGIATVNAGHER--RLARKLGAHSVPAIVGIINGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred HHHHHHHHh-cCceEEEEeccccH--HHHHHcCCccCCEEEEEECCEEEEEecCCCCHHHHHHHHhc
Confidence 356677752 36999999996644 899999999 999999999877778899999999999975
No 155
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.86 E-value=6.1e-05 Score=66.61 Aligned_cols=78 Identities=21% Similarity=0.288 Sum_probs=64.2
Q ss_pred eeEEEEecccccccccccccccCCeEEEecCC-ceeeecCCC-CCHHHHHHHHhCCCCCCCCCCCCCCCCCCCCeeEEec
Q psy1110 268 GILAAVDVTREKSLGKRFDIKGFPTLKYFRAG-SVAFDAGHL-RDASRLVEFMRDPTEPPPPPPPEPAWAEEPSEVYHLG 345 (366)
Q Consensus 268 v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G-~~~~~~~g~-~~~e~l~~fi~~~~~~~~~~~~~~~~~~~~~~v~~lt 345 (366)
+.++.+. +.++++.++++. |++++|+++ +....|.|. .+.+.|..||..+..|. |.++|
T Consensus 23 ~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~---------------v~~~t 83 (184)
T PF13848_consen 23 YQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPL---------------VPELT 83 (184)
T ss_dssp SEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTS---------------CEEES
T ss_pred cEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhcccc---------------ccccc
Confidence 4555543 556888999999 999999885 346788887 89999999999999999 99999
Q ss_pred hhcHHHHhhccCc-eEEEEe
Q psy1110 346 ADNFASTLRKKKH-ALVMFY 364 (366)
Q Consensus 346 ~~~~~~~~~~~~~-~~v~fy 364 (366)
.+++..+...+.+ ++++|+
T Consensus 84 ~~n~~~~~~~~~~~~~~~~~ 103 (184)
T PF13848_consen 84 PENFEKLFSSPKPPVLILFD 103 (184)
T ss_dssp TTHHHHHHSTSSEEEEEEEE
T ss_pred hhhHHHHhcCCCceEEEEEE
Confidence 9999999988766 566655
No 156
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.86 E-value=2.9e-05 Score=62.08 Aligned_cols=63 Identities=11% Similarity=0.217 Sum_probs=50.9
Q ss_pred CchHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecC-eeeEeecCCccHHHHHHHH
Q psy1110 14 TSPLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNA-EVKYVYENGNTKDKIIEFV 77 (366)
Q Consensus 14 ~~~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g-~~~~~y~g~r~~~~i~~fi 77 (366)
...+++.+....++.++.+||..+ +.++|.+++|+ ||+.+|.+| .....|.|.++.++|++|+
T Consensus 40 ~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 40 YEKLAAVFANEDDVVIAKVDADEA-NKDLAKKYGVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred HHHHHHHhCCCCCEEEEEEECCCc-chhhHHhCCCCCcCEEEEEeCCCCCccccCCccCHHHHHhhC
Confidence 345566665446799999999551 45999999999 999999977 4568899999999999986
No 157
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.86 E-value=3.4e-05 Score=61.31 Aligned_cols=59 Identities=8% Similarity=0.095 Sum_probs=49.9
Q ss_pred hHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHHh
Q psy1110 16 PLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFVR 78 (366)
Q Consensus 16 ~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi~ 78 (366)
.+++.+. +.+.+++|||.. ..++|.+++|+ ||+.+|++|.....|.|.++.+.|..|+.
T Consensus 36 ~~~~~~~--~~~~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 36 RLAEEYQ--GQFVLAKVNCDA--QPQIAQQFGVQALPTVYLFAAGQPVDGFQGAQPEEQLRQMLD 96 (96)
T ss_pred HHHHHhC--CcEEEEEEeccC--CHHHHHHcCCCCCCEEEEEeCCEEeeeecCCCCHHHHHHHhC
Confidence 4555554 569999999966 55999999999 99999998887788999999999999873
No 158
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.80 E-value=3.8e-05 Score=61.38 Aligned_cols=61 Identities=13% Similarity=0.199 Sum_probs=50.5
Q ss_pred CchHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCe--eeEeecCCccHHHHHHHH
Q psy1110 14 TSPLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAE--VKYVYENGNTKDKIIEFV 77 (366)
Q Consensus 14 ~~~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~--~~~~y~g~r~~~~i~~fi 77 (366)
...+|+++.....+.+++|||.. . ++|.++++. ||+.+|++|. ....|.|.++.++|++|+
T Consensus 40 ~~~~~~~~~~~~~~~~~~id~~~--~-~~~~~~~~~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 40 YEELAEKLKGDDNVVIAKMDATA--N-DVPSEFVVDGFPTILFFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred HHHHHHHhcCCCCEEEEEEeCcc--h-hhhhhccCCCCCEEEEEcCCCcCCceEccCCcCHHHHHhhC
Confidence 34677777654579999999965 3 588899988 9999999886 567899999999999986
No 159
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.79 E-value=3.9e-05 Score=62.99 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=48.7
Q ss_pred chHHHhhcCCCCeEEEEeeecccCCcchhcc-CCcc--ceEEeeecCe-eeEeecCC-ccHHHHHHHH
Q psy1110 15 SPLAKEIVKPKAITLGLIERLTEKADPVCTR-EKAK--KKVRRQKNAE-VKYVYENG-NTKDKIIEFV 77 (366)
Q Consensus 15 ~~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~-~~I~--Pti~~f~~g~-~~~~y~g~-r~~~~i~~fi 77 (366)
.++|+++. ..++.+++|||..+ ...+|.+ ++|+ ||+.+|.+|. ....|.|+ |+.++|++|+
T Consensus 44 ~~la~~~~-~~~~~~~~vd~d~~-~~~~~~~~~~v~~~Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 44 EELAEKLA-GSNVKVAKFNADGE-QREFAKEELQLKSFPTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred HHHHHHhc-cCCeEEEEEECCcc-chhhHHhhcCCCcCCEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 46777777 23699999999763 2378975 8998 9999998764 56889995 9999999986
No 160
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.75 E-value=4e-05 Score=60.12 Aligned_cols=61 Identities=18% Similarity=0.360 Sum_probs=50.3
Q ss_pred chHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecC-eeeEeecCCccHHHHHHHH
Q psy1110 15 SPLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNA-EVKYVYENGNTKDKIIEFV 77 (366)
Q Consensus 15 ~~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g-~~~~~y~g~r~~~~i~~fi 77 (366)
..+|+.+.....+.++.|||.. ...+|++++|+ ||+.+|+++ .....|.|.++.+.|.+|+
T Consensus 38 ~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 38 EKLAKELKGDGKVVVAKVDCTA--NNDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred HHHHHHhccCCceEEEEeeccc--hHHHHHhCCCCCCCEEEEEcCCCcccccCCCCcCHHHHHhhC
Confidence 3455566434789999999966 44999999999 999999987 6678899999999998885
No 161
>PRK15000 peroxidase; Provisional
Probab=97.74 E-value=9e-05 Score=67.89 Aligned_cols=45 Identities=7% Similarity=0.222 Sum_probs=39.5
Q ss_pred cCCeEEEEEECC-CChhhhcccHHHHHHHHHHhcc-ccEEEeeccCC
Q psy1110 115 EESSVLVMFYAP-WCGHCKKLKPEYEEAAATMKQQ-RAYYGMGMLRH 159 (366)
Q Consensus 115 ~~k~vlV~F~a~-wC~~Ck~~~p~~e~la~~~~~~-v~~~~v~~~~~ 159 (366)
.++.++|.||+. ||..|....+.+.+++.+|.+. +.++.++++..
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~ 79 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSE 79 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 468999999995 9999999999999999999865 88999998754
No 162
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.73 E-value=0.00011 Score=68.16 Aligned_cols=45 Identities=18% Similarity=0.168 Sum_probs=38.7
Q ss_pred CCe-EEEEEECCCChhhhcccHHHHHHHHHHhcc-ccEEEeeccCCc
Q psy1110 116 ESS-VLVMFYAPWCGHCKKLKPEYEEAAATMKQQ-RAYYGMGMLRHR 160 (366)
Q Consensus 116 ~k~-vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~-v~~~~v~~~~~~ 160 (366)
++. +|+.||++||+.|....+.+.+++.+|.+. +.++.++++...
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~ 74 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVF 74 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHH
Confidence 454 578999999999999999999999999765 889999988744
No 163
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00023 Score=62.14 Aligned_cols=44 Identities=16% Similarity=0.506 Sum_probs=36.6
Q ss_pred ccccccccccccCCeEEEe-cCCceeeecCCCCCHHHHH---HHHhCC
Q psy1110 278 EKSLGKRFDIKGFPTLKYF-RAGSVAFDAGHLRDASRLV---EFMRDP 321 (366)
Q Consensus 278 ~~~l~~~~~I~~~Ptl~~f-k~G~~~~~~~g~~~~e~l~---~fi~~~ 321 (366)
..++++.|+++++||+++| ++|+.+...-|..+++.++ +|+.+.
T Consensus 104 ~~ELa~kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g 151 (182)
T COG2143 104 TEELAQKFAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLKYVADG 151 (182)
T ss_pred HHHHHHHhccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence 3588999999999999999 6889999999999998754 555443
No 164
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=97.71 E-value=5.1e-05 Score=61.58 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=47.4
Q ss_pred hHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHH
Q psy1110 16 PLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFV 77 (366)
Q Consensus 16 ~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi 77 (366)
.+|+++. ++.+++||+.. .+.++|.+++|+ ||+.+|++| ....|.|.++.++|++|+
T Consensus 42 ~la~~~~---~~~~~~vd~~~-~~~~l~~~~~V~~~PT~~lf~~g-~~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 42 ALSSMFP---QIRHLAIEESS-IKPSLLSRYGVVGFPTILLFNST-PRVRYNGTRTLDSLAAFY 100 (100)
T ss_pred HHHHHhc---cCceEEEECCC-CCHHHHHhcCCeecCEEEEEcCC-ceeEecCCCCHHHHHhhC
Confidence 4555553 58899999951 355899999999 999999988 778999999999999986
No 165
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.70 E-value=3.1e-05 Score=58.63 Aligned_cols=22 Identities=23% Similarity=0.806 Sum_probs=19.1
Q ss_pred EEEEECCCChhhhcccHHHHHH
Q psy1110 120 LVMFYAPWCGHCKKLKPEYEEA 141 (366)
Q Consensus 120 lV~F~a~wC~~Ck~~~p~~e~l 141 (366)
++.||++||++|+++++.++++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~ 23 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL 23 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc
Confidence 5689999999999999988665
No 166
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.68 E-value=0.0001 Score=58.31 Aligned_cols=62 Identities=11% Similarity=0.055 Sum_probs=51.3
Q ss_pred chHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHHhCc
Q psy1110 15 SPLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFVRNP 80 (366)
Q Consensus 15 ~~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi~~~ 80 (366)
+.+++++. +++.++.|||..+ ..+|++++|. ||+.+|++|.....+.|.++.+.|.+|+.+.
T Consensus 37 ~~~~~~~~--~~~~~~~vd~~~~--~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 37 EELAKEYE--GKVKFVKLNVDEN--PDIAAKYGIRSIPTLLLFKNGKEVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred HHHHHHhc--CCeEEEEEECCCC--HHHHHHcCCCcCCEEEEEeCCcEeeeecCCCCHHHHHHHHHhh
Confidence 34555554 5799999999664 4899999999 9999999888778888999999999999753
No 167
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.67 E-value=7.1e-05 Score=69.82 Aligned_cols=64 Identities=13% Similarity=0.102 Sum_probs=53.4
Q ss_pred chHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHHhCcCC
Q psy1110 15 SPLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFVRNPQA 82 (366)
Q Consensus 15 ~~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi~~~~~ 82 (366)
..+|+++. +.|.+++|||.+ +.++|++++|+ ||+.+|++|.....+.|.++.++|.+|+.....
T Consensus 75 e~la~~~~--~~v~~~~VD~~~--~~~l~~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 75 ERLAKALK--GQVNVADLDATR--ALNLAKRFAIKGYPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred HHHHHHcC--CCeEEEEecCcc--cHHHHHHcCCCcCCEEEEEECCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 35777776 679999999966 45999999999 999999998766556788999999999977654
No 168
>KOG0910|consensus
Probab=97.62 E-value=9.7e-05 Score=64.19 Aligned_cols=63 Identities=13% Similarity=0.086 Sum_probs=55.4
Q ss_pred chHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHHhCcC
Q psy1110 15 SPLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFVRNPQ 81 (366)
Q Consensus 15 ~~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi~~~~ 81 (366)
..++.+++ +.|++++||-++ +.+|+.+|+|+ ||+.+|++|+....+-|..+.+.|.+++.+..
T Consensus 84 ~~~~~~~~--g~~k~~kvdtD~--~~ela~~Y~I~avPtvlvfknGe~~d~~vG~~~~~~l~~~i~k~l 148 (150)
T KOG0910|consen 84 EELVSEYA--GKFKLYKVDTDE--HPELAEDYEISAVPTVLVFKNGEKVDRFVGAVPKEQLRSLIKKFL 148 (150)
T ss_pred HHHHHhhc--CeEEEEEEcccc--ccchHhhcceeeeeEEEEEECCEEeeeecccCCHHHHHHHHHHHh
Confidence 35677776 899999999966 55999999999 99999999998889999999999999997654
No 169
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.62 E-value=0.00015 Score=67.20 Aligned_cols=40 Identities=18% Similarity=0.283 Sum_probs=32.7
Q ss_pred CCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeecc
Q psy1110 116 ESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGML 157 (366)
Q Consensus 116 ~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~ 157 (366)
++.-|+.||.+.|+.|+.+.|.+..++++|.=. ++.|++|
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~--v~~vs~D 159 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYGFS--VIPVSLD 159 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCE--EEEEecC
Confidence 677799999999999999999999999999544 4444433
No 170
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.61 E-value=0.00015 Score=66.48 Aligned_cols=43 Identities=14% Similarity=0.214 Sum_probs=37.2
Q ss_pred eEEEEEECCCChhhhcccHHHHHHHHHHhcc-ccEEEeeccCCc
Q psy1110 118 SVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ-RAYYGMGMLRHR 160 (366)
Q Consensus 118 ~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~-v~~~~v~~~~~~ 160 (366)
.+|+.||++||+.|....+.+.+++++|++. +.++.|+++...
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~ 71 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVE 71 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHH
Confidence 4566899999999999999999999999865 889999988643
No 171
>PRK09381 trxA thioredoxin; Provisional
Probab=97.59 E-value=0.00019 Score=58.51 Aligned_cols=61 Identities=16% Similarity=0.137 Sum_probs=51.9
Q ss_pred hHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHHhCc
Q psy1110 16 PLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFVRNP 80 (366)
Q Consensus 16 ~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi~~~ 80 (366)
.+|+.+. +++.++.|||.. ...++.+++|+ ||+.+|++|.....+.|..+.+.|..|+...
T Consensus 45 ~l~~~~~--~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~ 107 (109)
T PRK09381 45 EIADEYQ--GKLTVAKLNIDQ--NPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKEFLDAN 107 (109)
T ss_pred HHHHHhC--CCcEEEEEECCC--ChhHHHhCCCCcCCEEEEEeCCeEEEEecCCCCHHHHHHHHHHh
Confidence 4666665 579999999955 45899999999 9999999998888899999999999998764
No 172
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.59 E-value=0.00017 Score=58.50 Aligned_cols=63 Identities=17% Similarity=0.371 Sum_probs=51.4
Q ss_pred chHHHhhcCC-CCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHHhCc
Q psy1110 15 SPLAKEIVKP-KAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFVRNP 80 (366)
Q Consensus 15 ~~la~e~~~~-~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi~~~ 80 (366)
..+|+++... ..+.++.+||.. +.++|.+++|+ ||+.+|+++ ....|.|.++.++|.+|+++.
T Consensus 38 ~~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~I~~~Pt~~l~~~~-~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 38 NEVGAELKSSGSPVRVGKLDATA--YSSIASEFGVRGYPTIKLLKGD-LAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred HHHHHHHHhcCCcEEEEEEECcc--CHhHHhhcCCccccEEEEEcCC-CceeecCCCCHHHHHHHHHhh
Confidence 3577777532 469999999955 55999999999 999999765 457799999999999999763
No 173
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.58 E-value=0.00025 Score=54.60 Aligned_cols=44 Identities=16% Similarity=0.332 Sum_probs=30.2
Q ss_pred EEEecccccccccccccccCCeEEEecCCceeeecCC-CCCHHHHHHHHh
Q psy1110 271 AAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGH-LRDASRLVEFMR 319 (366)
Q Consensus 271 a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g-~~~~e~l~~fi~ 319 (366)
-.+|....+.+ .+|+|.+.|++++ ||++ .+.| ..+.+.|.+||+
T Consensus 32 ei~~~~~~~~~-~~ygv~~vPalvI--ng~~--~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 32 EIIDIEDFEEI-EKYGVMSVPALVI--NGKV--VFVGRVPSKEELKELLE 76 (76)
T ss_dssp EEEETTTHHHH-HHTT-SSSSEEEE--TTEE--EEESS--HHHHHHHHHH
T ss_pred EEEEccCHHHH-HHcCCCCCCEEEE--CCEE--EEEecCCCHHHHHHHhC
Confidence 33445566666 9999999999988 8883 4556 566778888874
No 174
>KOG0911|consensus
Probab=97.55 E-value=1.7e-05 Score=72.88 Aligned_cols=178 Identities=15% Similarity=0.167 Sum_probs=113.6
Q ss_pred hhccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceee---eeecCCCcccccCCCCCC
Q psy1110 112 VIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVS---SLRNKNGEPTTHPSGTPQ 188 (366)
Q Consensus 112 ~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~---~l~~~~G~~~~~~~g~~~ 188 (366)
+.++++.+++.|||+||.+|+.+.-++..+++.. .+..+++.+.++...++..+.+.. ++.+..|..+.+..|...
T Consensus 13 ~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~ 91 (227)
T KOG0911|consen 13 LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADP 91 (227)
T ss_pred HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCc
Confidence 4557899999999999999999999999999988 778999999999999999988764 788889999999988877
Q ss_pred CCCCCccccCCCCCC-----CCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCC---cCCcceeeeccccccccccCCCC
Q psy1110 189 TSDTPRTQCCHPAAH-----SPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPES---VGRGWELRQVGTGKRIKSINSGS 260 (366)
Q Consensus 189 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~~~~~~c~~c~~~~p~~~~~ 260 (366)
.+..+.......... .....+++...+.... +.+-++-+.. .... .+--=..+.||..+++.-+|.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~-~~~~l~~lv~---a~~v~lFmKG~p~~P~CGFS~~~v~iL~-- 165 (227)
T KOG0911|consen 92 PFLVSKVEKLAESGSASLGMGLSTTIRETQTTNETD-LDNRLEKLVK---AKPVMLFMKGTPEEPKCGFSRQLVGILQ-- 165 (227)
T ss_pred HHHHHHHHHhhhhcccccCCCCCcchhcccccchhh-HHHHHHHhcc---cCeEEEEecCCCCcccccccHHHHHHHH--
Confidence 666544333222221 0111111111111111 1111111000 0000 001123567999999998873
Q ss_pred CCCCccceeEEEEecccccccccccc----cccCCeEEEecCCcee
Q psy1110 261 FSPRQITGILAAVDVTREKSLGKRFD----IKGFPTLKYFRAGSVA 302 (366)
Q Consensus 261 ~~~~~~~v~~a~vd~~~~~~l~~~~~----I~~~Ptl~~fk~G~~~ 302 (366)
.-++.+..+|.-.+.++....+ .-.||.|++ +|..+
T Consensus 166 ----~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI--~GEFi 205 (227)
T KOG0911|consen 166 ----SHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYV--KGEFI 205 (227)
T ss_pred ----HcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeE--CCEec
Confidence 2346788889887776644332 445555666 77743
No 175
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=97.46 E-value=0.00033 Score=62.01 Aligned_cols=44 Identities=14% Similarity=0.483 Sum_probs=29.6
Q ss_pred cchhhhhhhccCCeEEEEEECCCChhhhcccH-HH--HHHHHHHhcc
Q psy1110 105 TDDNFDLVIQEESSVLVMFYAPWCGHCKKLKP-EY--EEAAATMKQQ 148 (366)
Q Consensus 105 ~~~~~~~~i~~~k~vlV~F~a~wC~~Ck~~~p-~~--e~la~~~~~~ 148 (366)
.++.++..-+++|+++|.++.+||..|..|.. +| .++++.++.+
T Consensus 26 ~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~ 72 (163)
T PF03190_consen 26 GEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN 72 (163)
T ss_dssp SHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH
T ss_pred CHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC
Confidence 34566667678999999999999999998875 33 4566666655
No 176
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.45 E-value=0.0003 Score=56.29 Aligned_cols=60 Identities=15% Similarity=0.110 Sum_probs=50.7
Q ss_pred chHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHHh
Q psy1110 15 SPLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFVR 78 (366)
Q Consensus 15 ~~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi~ 78 (366)
.++++++. +.+.+..+|+.+ ..+++.+++|. ||+.+|++|+....+.|.++.++|.+|++
T Consensus 36 ~~l~~~~~--~~v~~~~id~d~--~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 36 NKVIDEFD--GAVHFVEIDIDE--DQEIAEAAGIMGTPTVQFFKDKELVKEISGVKMKSEYREFIE 97 (97)
T ss_pred HHHHHHhC--CceEEEEEECCC--CHHHHHHCCCeeccEEEEEECCeEEEEEeCCccHHHHHHhhC
Confidence 34555655 579999999965 44899999999 99999999988889999999999999874
No 177
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.45 E-value=0.00058 Score=71.14 Aligned_cols=52 Identities=10% Similarity=-0.038 Sum_probs=43.9
Q ss_pred eeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhCCCC
Q psy1110 268 GILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTE 323 (366)
Q Consensus 268 v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~~~~ 323 (366)
+..-.+|...+.++..+|+|.++|++++ +|+ ..+.|..+.+++++.+.....
T Consensus 148 i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~--~~~~g~~~~~~~~~~~~~~~~ 199 (517)
T PRK15317 148 ITHTMIDGALFQDEVEARNIMAVPTVFL--NGE--EFGQGRMTLEEILAKLDTGAA 199 (517)
T ss_pred ceEEEEEchhCHhHHHhcCCcccCEEEE--CCc--EEEecCCCHHHHHHHHhcccc
Confidence 6677789999999999999999999987 776 346788899999999887654
No 178
>PRK13189 peroxiredoxin; Provisional
Probab=97.43 E-value=0.00028 Score=65.72 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=37.8
Q ss_pred CC-eEEEEEECCCChhhhcccHHHHHHHHHHhcc-ccEEEeeccCCc
Q psy1110 116 ES-SVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ-RAYYGMGMLRHR 160 (366)
Q Consensus 116 ~k-~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~-v~~~~v~~~~~~ 160 (366)
++ .+|+.||++||..|....+.+.+++.+|.+. ++++.++++...
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~ 81 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVF 81 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHH
Confidence 45 5566789999999999999999999999765 888999888644
No 179
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.43 E-value=0.00015 Score=55.90 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=20.2
Q ss_pred EEEEECCCChhhhcccHHHHHHH
Q psy1110 120 LVMFYAPWCGHCKKLKPEYEEAA 142 (366)
Q Consensus 120 lV~F~a~wC~~Ck~~~p~~e~la 142 (366)
++.|+++||++|+++.+.++++.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~ 23 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN 23 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC
Confidence 46799999999999999988875
No 180
>PRK10996 thioredoxin 2; Provisional
Probab=97.42 E-value=0.00032 Score=60.35 Aligned_cols=61 Identities=11% Similarity=0.121 Sum_probs=52.1
Q ss_pred chHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHHhC
Q psy1110 15 SPLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFVRN 79 (366)
Q Consensus 15 ~~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi~~ 79 (366)
..+++++. ..+.+++||+.. ..+++.+++|+ ||+.+|++|+....+.|..+.+.|.+|+.+
T Consensus 75 ~~l~~~~~--~~v~~~~vd~~~--~~~l~~~~~V~~~Ptlii~~~G~~v~~~~G~~~~e~l~~~l~~ 137 (139)
T PRK10996 75 EDVAAERS--GKVRFVKVNTEA--ERELSARFRIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNE 137 (139)
T ss_pred HHHHHHhC--CCeEEEEEeCCC--CHHHHHhcCCCccCEEEEEECCEEEEEEcCCCCHHHHHHHHHH
Confidence 34565555 579999999955 45999999999 999999999888889999999999999975
No 181
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.42 E-value=0.00043 Score=58.28 Aligned_cols=41 Identities=17% Similarity=0.432 Sum_probs=30.0
Q ss_pred cCCeEEEEEECC-------CChhhhcccHHHHHHHHHHhccccEEEee
Q psy1110 115 EESSVLVMFYAP-------WCGHCKKLKPEYEEAAATMKQQRAYYGMG 155 (366)
Q Consensus 115 ~~k~vlV~F~a~-------wC~~Ck~~~p~~e~la~~~~~~v~~~~v~ 155 (366)
++++++|.|+++ ||+.|....|.+++.-....++..++.+.
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~ 65 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVE 65 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 468899999965 99999999999999887765554444444
No 182
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.39 E-value=0.00035 Score=58.10 Aligned_cols=66 Identities=12% Similarity=0.077 Sum_probs=53.1
Q ss_pred ccCCCCCCchHHHhhcCC--CCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHH
Q psy1110 7 GTLNKEDTSPLAKEIVKP--KAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKII 74 (366)
Q Consensus 7 ~~~~~~~~~~la~e~~~~--~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~ 74 (366)
.+-.+.+.+|.-.++++. +.+.|++||++.+. +++.++||+ ||+.+|++|+....+.|..+.+.+.
T Consensus 40 ~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~--~la~~f~V~sIPTli~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 40 RFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ--ALAARFGVLRTPALLFFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred cCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH--HHHHHcCCCcCCEEEEEECCEEEEEEeCccCHHHHh
Confidence 556666666666666643 56999999997755 999999999 9999999999888889988877654
No 183
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.38 E-value=0.00059 Score=56.30 Aligned_cols=46 Identities=28% Similarity=0.402 Sum_probs=38.6
Q ss_pred eeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHH
Q psy1110 268 GILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASR 313 (366)
Q Consensus 268 v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~ 313 (366)
...+.+.......+..+|++..+|++++|++|+.+....|.++-++
T Consensus 61 ~~~avv~~~~e~~L~~r~gv~~~PaLvf~R~g~~lG~i~gi~dW~d 106 (107)
T PF07449_consen 61 FRGAVVARAAERALAARFGVRRWPALVFFRDGRYLGAIEGIRDWAD 106 (107)
T ss_dssp EEEEEEEHHHHHHHHHHHT-TSSSEEEEEETTEEEEEEESSSTHHH
T ss_pred cceEEECchhHHHHHHHhCCccCCeEEEEECCEEEEEecCeecccc
Confidence 4566677777889999999999999999999999999999887654
No 184
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.35 E-value=0.00097 Score=52.98 Aligned_cols=39 Identities=13% Similarity=0.338 Sum_probs=31.7
Q ss_pred hhhhhhhccCCeEEEEEECCCChhhhcccHHHHHHHHHHhcc
Q psy1110 107 DNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148 (366)
Q Consensus 107 ~~~~~~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~ 148 (366)
+.++.++..+..++|-|+.++|+ .....|.++|+.+.+.
T Consensus 8 ~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~ 46 (97)
T cd02981 8 EELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDD 46 (97)
T ss_pred HHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccC
Confidence 44666788899999999999987 4778888898888665
No 185
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.34 E-value=0.00071 Score=62.71 Aligned_cols=45 Identities=9% Similarity=0.081 Sum_probs=37.7
Q ss_pred CCeE-EEEEECCCChhhhcccHHHHHHHHHHhcc-ccEEEeeccCCc
Q psy1110 116 ESSV-LVMFYAPWCGHCKKLKPEYEEAAATMKQQ-RAYYGMGMLRHR 160 (366)
Q Consensus 116 ~k~v-lV~F~a~wC~~Ck~~~p~~e~la~~~~~~-v~~~~v~~~~~~ 160 (366)
++.+ |+.||++||..|....+.+.+++.+|.+. ++++.+++|...
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~ 79 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNI 79 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHH
Confidence 4544 45889999999999999999999999765 889999987643
No 186
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.34 E-value=8.4e-05 Score=67.53 Aligned_cols=42 Identities=24% Similarity=0.429 Sum_probs=34.0
Q ss_pred EecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHH
Q psy1110 273 VDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFM 318 (366)
Q Consensus 273 vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi 318 (366)
.+...+..++..++|++.|+|+ |++|+. ..|..+.+.|.+||
T Consensus 156 ~~i~~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 156 NPVAANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred chHHHHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 3455778899999999999998 788885 46888888887764
No 187
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.33 E-value=0.0004 Score=53.09 Aligned_cols=67 Identities=10% Similarity=0.114 Sum_probs=52.9
Q ss_pred CCCCCchHHHhhcC-CCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHHh
Q psy1110 10 NKEDTSPLAKEIVK-PKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFVR 78 (366)
Q Consensus 10 ~~~~~~~la~e~~~-~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi~ 78 (366)
.+....+.-+++.+ .+++.++.+||.. ..++|.+++|. ||+.+|.+|.....+.|..+.+.|.+|+.
T Consensus 24 ~C~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~v~~~P~~~~~~~g~~~~~~~g~~~~~~l~~~i~ 93 (93)
T cd02947 24 PCKAIAPVLEELAEEYPKVKFVKVDVDE--NPELAEEYGVRSIPTFLFFKNGKEVDRVVGADPKEELEEFLE 93 (93)
T ss_pred hHHHhhHHHHHHHHHCCCceEEEEECCC--ChhHHHhcCcccccEEEEEECCEEEEEEecCCCHHHHHHHhC
Confidence 34444444444443 3789999999965 44899999998 99999999988889999888899998873
No 188
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.32 E-value=0.00016 Score=67.85 Aligned_cols=44 Identities=18% Similarity=0.504 Sum_probs=37.3
Q ss_pred ecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhCC
Q psy1110 274 DVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDP 321 (366)
Q Consensus 274 d~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~~ 321 (366)
+..++..++.+++|+|.|||+ |.+|+.+ .|..+.+.|.++|+..
T Consensus 187 ~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 187 DIADHYALGVQFGVQGTPAIV-LSNGTLV---PGYQGPKEMKAFLDEH 230 (232)
T ss_pred hHHHhHHHHHHcCCccccEEE-EcCCeEe---eCCCCHHHHHHHHHHc
Confidence 456778899999999999999 6889854 7889999999998754
No 189
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.30 E-value=0.0015 Score=54.92 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=35.2
Q ss_pred ccccccccccc--ccCCeEEEecCC-ceeeec--CCCCCHHHHHHHHhCCCC
Q psy1110 277 REKSLGKRFDI--KGFPTLKYFRAG-SVAFDA--GHLRDASRLVEFMRDPTE 323 (366)
Q Consensus 277 ~~~~l~~~~~I--~~~Ptl~~fk~G-~~~~~~--~g~~~~e~l~~fi~~~~~ 323 (366)
+|.+|+++|+| ..||.+++|..| +...+| .|..+.++|..|+.++++
T Consensus 69 ~N~~Laery~i~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 69 ENMELAERYKIDKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp CCHHHHHHTT-SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred hHHHHHHHhCCCcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 56789999999 579999999733 445666 899999999999998875
No 190
>KOG1731|consensus
Probab=97.30 E-value=0.0011 Score=68.51 Aligned_cols=65 Identities=11% Similarity=0.114 Sum_probs=47.1
Q ss_pred hHHHhhcC-CCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeee----EeecCCccHHHHHHHHhCc
Q psy1110 16 PLAKEIVK-PKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVK----YVYENGNTKDKIIEFVRNP 80 (366)
Q Consensus 16 ~la~e~~~-~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~----~~y~g~r~~~~i~~fi~~~ 80 (366)
.+|+-+.+ ..-+.++.|||..+....+|.+++|+ ||||+|.++... ..+.|.-...++.+.+...
T Consensus 81 ~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~ 152 (606)
T KOG1731|consen 81 KFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRT 152 (606)
T ss_pred HHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHH
Confidence 46666664 35799999999999999999999999 999999977443 2333444455555555443
No 191
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.30 E-value=0.0009 Score=63.82 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=38.1
Q ss_pred cCCeEEEEEE-CCCChhhhcccHHHHHHHHHHhcc-ccEEEeeccCC
Q psy1110 115 EESSVLVMFY-APWCGHCKKLKPEYEEAAATMKQQ-RAYYGMGMLRH 159 (366)
Q Consensus 115 ~~k~vlV~F~-a~wC~~Ck~~~p~~e~la~~~~~~-v~~~~v~~~~~ 159 (366)
+++.+++.|| ++||+.|....+.+.+++++|.+. +.++.+++|..
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~ 143 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSP 143 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 3567777777 899999999999999999999865 88888988763
No 192
>KOG1672|consensus
Probab=97.27 E-value=0.00072 Score=61.00 Aligned_cols=50 Identities=20% Similarity=0.305 Sum_probs=41.1
Q ss_pred CCceEEec-chhhhhhhccCCeEEEEEECCCChhhhcccHHHHHHHHHHhc
Q psy1110 98 ESEVVHLT-DDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQ 147 (366)
Q Consensus 98 ~~~v~~l~-~~~~~~~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~ 147 (366)
.+....+. ..+|-+...+...|++.||-+--..|+-+-..++.||+.+-.
T Consensus 65 hG~y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e 115 (211)
T KOG1672|consen 65 HGEYEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE 115 (211)
T ss_pred CceEEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc
Confidence 34566666 567777777788899999999999999999999999998744
No 193
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.20 E-value=0.0012 Score=62.82 Aligned_cols=40 Identities=18% Similarity=0.147 Sum_probs=32.9
Q ss_pred CCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeecc
Q psy1110 116 ESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGML 157 (366)
Q Consensus 116 ~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~ 157 (366)
++.-|+.||.+.|++|.++.|.++.++++|.=. ++.|++|
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~--v~~VS~D 189 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYGIS--VIPISVD 189 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhCCe--EEEEecC
Confidence 567799999999999999999999999998644 4444443
No 194
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.20 E-value=0.0014 Score=54.92 Aligned_cols=53 Identities=11% Similarity=0.160 Sum_probs=39.5
Q ss_pred eEEEEec--ccccccccccccccCCeEEEe--cCC--ceeeecCCCCCHHHHHHHHhCC
Q psy1110 269 ILAAVDV--TREKSLGKRFDIKGFPTLKYF--RAG--SVAFDAGHLRDASRLVEFMRDP 321 (366)
Q Consensus 269 ~~a~vd~--~~~~~l~~~~~I~~~Ptl~~f--k~G--~~~~~~~g~~~~e~l~~fi~~~ 321 (366)
.+...|. .+...++..+++++||++.++ +++ .++.+..|..++++|+..+...
T Consensus 54 v~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~ 112 (116)
T cd02991 54 LFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFI 112 (116)
T ss_pred EEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHH
Confidence 3444444 334678889999999999888 334 4578899999999999887653
No 195
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.18 E-value=0.0013 Score=62.27 Aligned_cols=33 Identities=18% Similarity=0.068 Sum_probs=29.9
Q ss_pred CCeEEEEEECCCChhhhcccHHHHHHHHHHhcc
Q psy1110 116 ESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148 (366)
Q Consensus 116 ~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~ 148 (366)
+..-|+.||.+.|++|..+.|.++.++++|.=.
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~ 175 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLS 175 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCCe
Confidence 457799999999999999999999999998655
No 196
>KOG3425|consensus
Probab=97.18 E-value=0.0015 Score=54.52 Aligned_cols=52 Identities=17% Similarity=0.488 Sum_probs=40.7
Q ss_pred hhhhhhh---ccCCeEEEEEECC--------CChhhhcccHHHHHHHHHHhccccEEEeeccC
Q psy1110 107 DNFDLVI---QEESSVLVMFYAP--------WCGHCKKLKPEYEEAAATMKQQRAYYGMGMLR 158 (366)
Q Consensus 107 ~~~~~~i---~~~k~vlV~F~a~--------wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~ 158 (366)
+.|++++ .+++.++|+|+++ ||+.|.+..|++.+.-++...++.|+++.+.+
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~ 75 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGN 75 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecC
Confidence 4455544 3456699999975 99999999999999998887777777777655
No 197
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.11 E-value=0.0024 Score=66.50 Aligned_cols=51 Identities=16% Similarity=0.122 Sum_probs=42.1
Q ss_pred eeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhCCC
Q psy1110 268 GILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPT 322 (366)
Q Consensus 268 v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~~~ 322 (366)
+..-.+|...+.++..+|++..+|++++ +|+ ..+.|..+.+.+++.+....
T Consensus 149 i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~--~~~~g~~~~~~~~~~l~~~~ 199 (515)
T TIGR03140 149 ISHTMIDGALFQDEVEALGIQGVPAVFL--NGE--EFHNGRMDLAELLEKLEETA 199 (515)
T ss_pred ceEEEEEchhCHHHHHhcCCcccCEEEE--CCc--EEEecCCCHHHHHHHHhhcc
Confidence 5566789999999999999999999988 676 34678888888888886653
No 198
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.10 E-value=0.003 Score=57.57 Aligned_cols=46 Identities=11% Similarity=0.203 Sum_probs=39.3
Q ss_pred cCCeEEEEEEC-CCChhhhcccHHHHHHHHHHhcc-ccEEEeeccCCc
Q psy1110 115 EESSVLVMFYA-PWCGHCKKLKPEYEEAAATMKQQ-RAYYGMGMLRHR 160 (366)
Q Consensus 115 ~~k~vlV~F~a-~wC~~Ck~~~p~~e~la~~~~~~-v~~~~v~~~~~~ 160 (366)
.++.++|.||+ +||.+|....+.+.+++++|... ++++.|+++...
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~ 82 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEY 82 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHH
Confidence 46789999996 78999999889999999999875 899999987644
No 199
>KOG2603|consensus
Probab=97.08 E-value=0.0021 Score=61.94 Aligned_cols=117 Identities=22% Similarity=0.384 Sum_probs=88.8
Q ss_pred CCceEEecchhhhhhhcc---CCeEEEEEECC----CChhhhcccHHHHHHHHHHhccccEEEeeccCCcccccccceee
Q psy1110 98 ESEVVHLTDDNFDLVIQE---ESSVLVMFYAP----WCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVS 170 (366)
Q Consensus 98 ~~~v~~l~~~~~~~~i~~---~k~vlV~F~a~----wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~~~~~~v~~ 170 (366)
+++|+.+++++|.+++.. +-.++|+|.|. .|.-|+.+..++..+|+.+..+-.
T Consensus 39 ~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~-------------------- 98 (331)
T KOG2603|consen 39 ESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSP-------------------- 98 (331)
T ss_pred CCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCC--------------------
Confidence 358999999999999965 56788888876 599999999999999999877600
Q ss_pred eeecCCCcccccCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCChhhhHhhhhcccCCCCCcCCcceeeecccc
Q psy1110 171 SLRNKNGEPTTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTG 250 (366)
Q Consensus 171 ~l~~~~G~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c 250 (366)
T Consensus 99 -------------------------------------------------------------------------------- 98 (331)
T KOG2603|consen 99 -------------------------------------------------------------------------------- 98 (331)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCCCCCCCccceeEEEEecccccccccccccccCCeEEEec--CCcee-----eecCCCCCHHHHHHHHhCCCC
Q psy1110 251 KRIKSINSGSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFR--AGSVA-----FDAGHLRDASRLVEFMRDPTE 323 (366)
Q Consensus 251 ~~~~p~~~~~~~~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk--~G~~~-----~~~~g~~~~e~l~~fi~~~~~ 323 (366)
+ ....++-|+.+|-++..++++.++++..|+|++|+ .|+.. ..+.-.+.+|.+.+|+++.+.
T Consensus 99 ----------~-sn~tklFF~~Vd~~e~p~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tk 167 (331)
T KOG2603|consen 99 ----------F-SNGTKLFFCMVDYDESPQVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTK 167 (331)
T ss_pred ----------C-CCcceEEEEEEeccccHHHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhh
Confidence 0 01234889999999999999999999999999993 33322 111111238899999998765
Q ss_pred CC
Q psy1110 324 PP 325 (366)
Q Consensus 324 ~~ 325 (366)
-.
T Consensus 168 v~ 169 (331)
T KOG2603|consen 168 VN 169 (331)
T ss_pred he
Confidence 33
No 200
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.04 E-value=0.00096 Score=68.47 Aligned_cols=64 Identities=9% Similarity=0.103 Sum_probs=49.9
Q ss_pred CchHHHhhcCCCCeEEEEeeecccCCcchh-ccCCcc--ceEEeeecCe-eeEeec-CCccHHHHHHHHhC
Q psy1110 14 TSPLAKEIVKPKAITLGLIERLTEKADPVC-TREKAK--KKVRRQKNAE-VKYVYE-NGNTKDKIIEFVRN 79 (366)
Q Consensus 14 ~~~la~e~~~~~~I~~~~Vdc~~~~~~~lc-~~~~I~--Pti~~f~~g~-~~~~y~-g~r~~~~i~~fi~~ 79 (366)
...+|+++.. .++.|++|||+.+.. .+| .+++|. ||+.+|++|. ....|+ |.|+.++|+.|+..
T Consensus 393 ~eelA~~~~~-~~v~~~kVdvD~~~~-~~~~~~~~I~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 393 YLELAEKLAG-SGVKVAKFRADGDQK-EFAKQELQLGSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred HHHHHHHhcc-CCcEEEEEECCCCcc-HHHHHHcCCCccceEEEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 3567777762 359999999976432 354 789999 9999999885 457898 58999999999964
No 201
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.04 E-value=0.0012 Score=51.66 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=23.4
Q ss_pred EEEEECCCChhhhcccHHHHHHHHHH
Q psy1110 120 LVMFYAPWCGHCKKLKPEYEEAAATM 145 (366)
Q Consensus 120 lV~F~a~wC~~Ck~~~p~~e~la~~~ 145 (366)
++.|+.+||++|++....+++++.++
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~ 28 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEER 28 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccc
Confidence 67899999999999999999998765
No 202
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.03 E-value=0.0022 Score=52.08 Aligned_cols=54 Identities=26% Similarity=0.486 Sum_probs=44.1
Q ss_pred eeEEEEeccc--ccccccccccc----cCC-eEEEecCCceeeecCCCCCHHHHHHHHhCC
Q psy1110 268 GILAAVDVTR--EKSLGKRFDIK----GFP-TLKYFRAGSVAFDAGHLRDASRLVEFMRDP 321 (366)
Q Consensus 268 v~~a~vd~~~--~~~l~~~~~I~----~~P-tl~~fk~G~~~~~~~g~~~~e~l~~fi~~~ 321 (366)
..++-+||.. ..-+|++++|+ --| +|.-|++|..-..|....+..+|+.||++.
T Consensus 51 gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHYKdG~fHkdYdR~~t~kSmv~FlrDP 111 (112)
T cd03067 51 GTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHYKDGDFHTEYNRQLTFKSMVAFLRDP 111 (112)
T ss_pred eeEEEEecCChHHHHHHHHHccCCCCCCCcchhhcccCCCccccccchhhHHHHHHHhhCC
Confidence 5577778875 56789999888 445 356689999999999999999999999875
No 203
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.93 E-value=0.00077 Score=54.64 Aligned_cols=65 Identities=18% Similarity=0.353 Sum_probs=56.4
Q ss_pred CchHHHhhcCCCCeEEEEeeecccCCcchhccCCcc----c---eEEeeecCeeeEeecCCccHHHHHHHHhCc
Q psy1110 14 TSPLAKEIVKPKAITLGLIERLTEKADPVCTREKAK----K---KVRRQKNAEVKYVYENGNTKDKIIEFVRNP 80 (366)
Q Consensus 14 ~~~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~----P---ti~~f~~g~~~~~y~g~r~~~~i~~fi~~~ 80 (366)
.+.+|+++. +.=+++.|||-....+.||+++.|. | +|+=|++|.+...|.-..|..+++.|++++
T Consensus 40 ~~~~A~~vk--G~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHYKdG~fHkdYdR~~t~kSmv~FlrDP 111 (112)
T cd03067 40 LSDVAQAVK--GQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHYKDGDFHTEYNRQLTFKSMVAFLRDP 111 (112)
T ss_pred HHHHHHHhc--CceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhcccCCCccccccchhhHHHHHHHhhCC
Confidence 356788887 7788999999776677999999999 4 588899999999999999999999999875
No 204
>PLN02309 5'-adenylylsulfate reductase
Probab=96.93 E-value=0.0015 Score=67.08 Aligned_cols=63 Identities=10% Similarity=0.135 Sum_probs=50.4
Q ss_pred CchHHHhhcCCCCeEEEEeeec-ccCCcchhc-cCCcc--ceEEeeecCe-eeEeecC-CccHHHHHHHHhC
Q psy1110 14 TSPLAKEIVKPKAITLGLIERL-TEKADPVCT-REKAK--KKVRRQKNAE-VKYVYEN-GNTKDKIIEFVRN 79 (366)
Q Consensus 14 ~~~la~e~~~~~~I~~~~Vdc~-~~~~~~lc~-~~~I~--Pti~~f~~g~-~~~~y~g-~r~~~~i~~fi~~ 79 (366)
...||+++.. .+|.|++|||+ . ..++|. +++|+ |||++|++|. ....|.| .|+.++|+.|++.
T Consensus 387 ~e~LA~~~~~-~~V~f~kVD~d~~--~~~la~~~~~I~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 387 YEELAEKLAG-SGVKVAKFRADGD--QKEFAKQELQLGSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNS 455 (457)
T ss_pred HHHHHHHhcc-CCeEEEEEECCCc--chHHHHhhCCCceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHH
Confidence 3467777752 46999999996 4 348997 59999 9999999875 4578985 7999999999974
No 205
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=96.86 E-value=0.0035 Score=53.51 Aligned_cols=30 Identities=20% Similarity=0.574 Sum_probs=21.9
Q ss_pred CCeEEEEEECCCChhhhcccHHHHHHHHHH
Q psy1110 116 ESSVLVMFYAPWCGHCKKLKPEYEEAAATM 145 (366)
Q Consensus 116 ~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~ 145 (366)
....++-|..+|||.|....|.+.++++..
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~ 70 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEAN 70 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH-
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhC
Confidence 345677789999999999999999999864
No 206
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=96.84 E-value=0.0016 Score=52.07 Aligned_cols=62 Identities=15% Similarity=0.094 Sum_probs=48.8
Q ss_pred chHHHhhcCCCCeEEEEeeecccCCcchhccCCcc----ceEEeeecC-eeeEeecCC-ccHHHHHHHHhCc
Q psy1110 15 SPLAKEIVKPKAITLGLIERLTEKADPVCTREKAK----KKVRRQKNA-EVKYVYENG-NTKDKIIEFVRNP 80 (366)
Q Consensus 15 ~~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~----Pti~~f~~g-~~~~~y~g~-r~~~~i~~fi~~~ 80 (366)
..+|+++. ++|+|+.||+.+ +.+++.++||. |++.+|+++ +.++.+.++ .+.++|.+|+.+.
T Consensus 35 ~~vA~~~~--~~v~f~~vd~~~--~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 35 KEVAKKFK--GKLLFVVVDADD--FGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred HHHHHHhC--CeEEEEEEchHh--hHHHHHHcCCChhhCCEEEEEecccccccCCCccccCHHHHHHHHHhh
Confidence 45777777 789999999966 55899999996 999999983 234555554 5999999999753
No 207
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0016 Score=62.52 Aligned_cols=65 Identities=14% Similarity=0.140 Sum_probs=58.8
Q ss_pred chHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHHhCcCCc
Q psy1110 15 SPLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFVRNPQAT 83 (366)
Q Consensus 15 ~~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi~~~~~~ 83 (366)
..|+.++. +++++++|||+.+. .++.++||+ ||+..|+.|..+--|.|....+.|..|+.+....
T Consensus 66 ekla~~~~--G~f~LakvN~D~~p--~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 66 EKLAAEYK--GKFKLAKVNCDAEP--MVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred HHHHHHhC--CceEEEEecCCcch--hHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 46788888 99999999997766 999999999 9999999999999999999999999999887665
No 208
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=96.76 E-value=0.0039 Score=51.68 Aligned_cols=55 Identities=11% Similarity=0.030 Sum_probs=40.7
Q ss_pred eeEEEEeccccccccccccccc--CCeEEEecCCc-eeee-cCCCCCHHHHHHHHhCCC
Q psy1110 268 GILAAVDVTREKSLGKRFDIKG--FPTLKYFRAGS-VAFD-AGHLRDASRLVEFMRDPT 322 (366)
Q Consensus 268 v~~a~vd~~~~~~l~~~~~I~~--~Ptl~~fk~G~-~~~~-~~g~~~~e~l~~fi~~~~ 322 (366)
+.|+.+|.+........++++. +|.+.+..... ..+. +.+..+.+.|.+|+.+..
T Consensus 50 i~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~ 108 (111)
T cd03072 50 INFLTADGDKFRHPLLHLGKTPADLPVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLH 108 (111)
T ss_pred EEEEEEechHhhhHHHHcCCCHhHCCEEEEEcchhcCcCCCCccccCHHHHHHHHHHHh
Confidence 5667777776666778888887 99999885432 2444 567888999999998754
No 209
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=96.76 E-value=0.0024 Score=53.00 Aligned_cols=61 Identities=13% Similarity=0.181 Sum_probs=44.2
Q ss_pred chHHHhhcC-CCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeee----EeecCC-ccHHHHHH
Q psy1110 15 SPLAKEIVK-PKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVK----YVYENG-NTKDKIIE 75 (366)
Q Consensus 15 ~~la~e~~~-~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~----~~y~g~-r~~~~i~~ 75 (366)
..+|+.+.. ++.|.+++|||......++|++++|+ ||+.+|++|... ..|.|. |+.+++..
T Consensus 42 ~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02992 42 KKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRYFPPFSKEATDGLKQEGPERDVNELRE 110 (114)
T ss_pred HHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEEECCCCccCCCCCcccCCccCHHHHHH
Confidence 356776653 35699999999765556899999999 999999987522 356664 66666543
No 210
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=96.74 E-value=0.0021 Score=51.78 Aligned_cols=62 Identities=10% Similarity=-0.024 Sum_probs=50.2
Q ss_pred chHHHhhcCCCCeEEEEeeecccC--CcchhccCCcc--ceEEeee--cCeeeEeecCCccHHHHHHHHh
Q psy1110 15 SPLAKEIVKPKAITLGLIERLTEK--ADPVCTREKAK--KKVRRQK--NAEVKYVYENGNTKDKIIEFVR 78 (366)
Q Consensus 15 ~~la~e~~~~~~I~~~~Vdc~~~~--~~~lc~~~~I~--Pti~~f~--~g~~~~~y~g~r~~~~i~~fi~ 78 (366)
..+++.+. .++.+..||+.++. ..+++.+++|+ ||+.+|+ +|.....+.|.++.++|.++++
T Consensus 37 ~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 37 PEVQAALK--KDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred HHHHHHHh--CCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCCCCCCCcccccccCHHHHHHHhC
Confidence 35677776 38999999996532 34899999999 9999999 5677788899999999998873
No 211
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=96.72 E-value=0.0019 Score=53.93 Aligned_cols=51 Identities=6% Similarity=-0.080 Sum_probs=40.1
Q ss_pred hHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccH
Q psy1110 16 PLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTK 70 (366)
Q Consensus 16 ~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~ 70 (366)
.||.++. +.+.|.+||.++ ..+++.+++|+ ||+.+|++|+......|.-+.
T Consensus 38 ~la~~~~--~~v~f~kVDvD~--~~~la~~~~V~~iPTf~~fk~G~~v~~~~G~~~~ 90 (114)
T cd02954 38 KIAEDVS--NFAVIYLVDIDE--VPDFNKMYELYDPPTVMFFFRNKHMKIDLGTGNN 90 (114)
T ss_pred HHHHHcc--CceEEEEEECCC--CHHHHHHcCCCCCCEEEEEECCEEEEEEcCCCCC
Confidence 3455544 568999999966 55999999999 999999999888777664433
No 212
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=96.66 E-value=0.0049 Score=48.63 Aligned_cols=57 Identities=14% Similarity=0.077 Sum_probs=43.8
Q ss_pred hHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHH
Q psy1110 16 PLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFV 77 (366)
Q Consensus 16 ~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi 77 (366)
.+++++. ..+.+.+||+.+ +.++|.+++|+ ||+.+|++|.....+.| .+.++|.+.+
T Consensus 38 ~l~~~~~--~~i~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 38 ELAKEAF--PSVLFLSIEAEE--LPEISEKFEITAVPTFVFFRNGTIVDRVSG-ADPKELAKKV 96 (97)
T ss_pred HHHHHhC--CceEEEEEcccc--CHHHHHhcCCccccEEEEEECCEEEEEEeC-CCHHHHHHhh
Confidence 4555553 689999999954 55999999999 99999998876666666 4566666654
No 213
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=96.62 E-value=0.0048 Score=50.00 Aligned_cols=59 Identities=20% Similarity=0.173 Sum_probs=44.6
Q ss_pred hHHHhhcCCCCeEEEEeeecccC-CcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHHh
Q psy1110 16 PLAKEIVKPKAITLGLIERLTEK-ADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFVR 78 (366)
Q Consensus 16 ~la~e~~~~~~I~~~~Vdc~~~~-~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi~ 78 (366)
.||+++ ..+.|++||++++. ..+++.+++|+ ||+.+|++|.....+.| ...+.|.+-+.
T Consensus 39 ~la~~~---~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~~v~~~~G-~~~~~l~~~~~ 100 (103)
T cd02985 39 KLSRTC---NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGEKIHEEEG-IGPDELIGDVL 100 (103)
T ss_pred HHHHHC---CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCeEEEEEeC-CCHHHHHHHHH
Confidence 455555 46899999996642 23799999999 99999999988888888 44556666554
No 214
>KOG0907|consensus
Probab=96.61 E-value=0.0052 Score=50.66 Aligned_cols=58 Identities=14% Similarity=0.056 Sum_probs=44.3
Q ss_pred hHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHHhC
Q psy1110 16 PLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFVRN 79 (366)
Q Consensus 16 ~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi~~ 79 (366)
.||.++. . +.|.+||+++ ..++|++++|+ ||+.+|++|.....+-|.. .+.+.+.+.+
T Consensus 45 ~La~~y~--~-v~Flkvdvde--~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~-~~~l~~~i~~ 104 (106)
T KOG0907|consen 45 KLAEKYP--D-VVFLKVDVDE--LEEVAKEFNVKAMPTFVFYKGGEEVDEVVGAN-KAELEKKIAK 104 (106)
T ss_pred HHHHHCC--C-CEEEEEeccc--CHhHHHhcCceEeeEEEEEECCEEEEEEecCC-HHHHHHHHHh
Confidence 3444444 3 9999999977 77999999999 9999999998888877743 3356655543
No 215
>PHA02278 thioredoxin-like protein
Probab=96.60 E-value=0.0051 Score=50.36 Aligned_cols=52 Identities=12% Similarity=0.030 Sum_probs=43.2
Q ss_pred CCeEEEEeeecccC--CcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHH
Q psy1110 25 KAITLGLIERLTEK--ADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEF 76 (366)
Q Consensus 25 ~~I~~~~Vdc~~~~--~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~f 76 (366)
..+.|.+||.+.+. ..+++.+++|+ ||+.+|++|+....+.|..+.+.|.++
T Consensus 45 ~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 45 IKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred CCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEEEEEeCCCCHHHHHhh
Confidence 45789999996542 24799999999 999999999888888898888887765
No 216
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=96.40 E-value=0.025 Score=52.96 Aligned_cols=65 Identities=11% Similarity=0.115 Sum_probs=55.5
Q ss_pred CCCceEEecchh---hhhhhccCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcc
Q psy1110 97 TESEVVHLTDDN---FDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRP 161 (366)
Q Consensus 97 ~~~~v~~l~~~~---~~~~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~ 161 (366)
.++.++.+++++ +-++.++++|.++.|.+--|++-..-...+++++++|.+.+.|+.|-+.|..+
T Consensus 80 Pns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~EAHp 147 (237)
T PF00837_consen 80 PNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEEAHP 147 (237)
T ss_pred CCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhhhCc
Confidence 456788888876 44667889999999999999999999999999999999988888888877554
No 217
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=96.32 E-value=0.0094 Score=49.09 Aligned_cols=39 Identities=15% Similarity=-0.038 Sum_probs=33.9
Q ss_pred CCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecC
Q psy1110 25 KAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYEN 66 (366)
Q Consensus 25 ~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g 66 (366)
++++|.+||+.+ . +++.+++|+ ||+.+|++|.....+.|
T Consensus 54 ~~v~f~~vd~~~--~-~l~~~~~i~~~Pt~~~f~~G~~v~~~~G 94 (113)
T cd02957 54 PETKFVKINAEK--A-FLVNYLDIKVLPTLLVYKNGELIDNIVG 94 (113)
T ss_pred CCcEEEEEEchh--h-HHHHhcCCCcCCEEEEEECCEEEEEEec
Confidence 368999999954 4 899999998 99999999988877776
No 218
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.29 E-value=0.0089 Score=44.05 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=16.9
Q ss_pred EEEEECCCChhhhcccHHHHH
Q psy1110 120 LVMFYAPWCGHCKKLKPEYEE 140 (366)
Q Consensus 120 lV~F~a~wC~~Ck~~~p~~e~ 140 (366)
++.|+++||++|.++...+++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~ 22 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE 22 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH
Confidence 567889999999988776665
No 219
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=96.29 E-value=0.012 Score=47.59 Aligned_cols=60 Identities=13% Similarity=0.077 Sum_probs=46.1
Q ss_pred chHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHHhC
Q psy1110 15 SPLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFVRN 79 (366)
Q Consensus 15 ~~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi~~ 79 (366)
..++.++. +..++|+.||++ + .+++.+++|+ ||+.+|++|+......| .+.+.|.+++..
T Consensus 40 ~~~~~~~~-~~~~~~~~vd~d-~--~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 40 KKIKNELG-DDLLHFATAEAD-T--IDTLKRYRGKCEPTFLFYKNGELVAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred HHHHHHcC-CCcEEEEEEeCC-C--HHHHHHcCCCcCcEEEEEECCEEEEEEec-CChHHHHHHHhh
Confidence 34555554 235899999996 3 3799999999 99999999987777667 477888888753
No 220
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=96.22 E-value=0.016 Score=48.08 Aligned_cols=54 Identities=19% Similarity=0.085 Sum_probs=38.6
Q ss_pred eeEEEEeccccccccccccccc----CCeEEEecCCceeeecCCCC-CHHHHHHHHhCC
Q psy1110 268 GILAAVDVTREKSLGKRFDIKG----FPTLKYFRAGSVAFDAGHLR-DASRLVEFMRDP 321 (366)
Q Consensus 268 v~~a~vd~~~~~~l~~~~~I~~----~Ptl~~fk~G~~~~~~~g~~-~~e~l~~fi~~~ 321 (366)
+.|+.+|........+.++++. +|++.++..+...+...+.. +.++|.+|+++.
T Consensus 52 i~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 52 LNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred EEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHHHh
Confidence 5566677766666777888874 99999986332344456667 889999999764
No 221
>KOG3414|consensus
Probab=96.12 E-value=0.028 Score=47.47 Aligned_cols=42 Identities=24% Similarity=0.322 Sum_probs=35.3
Q ss_pred hhhhhhh--ccCCeEEEEEECCCChhhhcccHHHHHHHHHHhcc
Q psy1110 107 DNFDLVI--QEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148 (366)
Q Consensus 107 ~~~~~~i--~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~ 148 (366)
...++.| .+.+.++|-|..+|-+.|..+-..+..++....+-
T Consensus 12 ~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf 55 (142)
T KOG3414|consen 12 WEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF 55 (142)
T ss_pred HHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc
Confidence 5567766 34789999999999999999999999999887665
No 222
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=96.04 E-value=0.017 Score=47.82 Aligned_cols=40 Identities=13% Similarity=-0.065 Sum_probs=33.5
Q ss_pred CCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecC
Q psy1110 25 KAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYEN 66 (366)
Q Consensus 25 ~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g 66 (366)
+.++|.+||+.+ ..+++++++|+ ||+.+|++|.....+.|
T Consensus 52 ~~i~f~~Vd~~~--~~~l~~~~~v~~vPt~l~fk~G~~v~~~~g 93 (113)
T cd02989 52 LETKFIKVNAEK--APFLVEKLNIKVLPTVILFKNGKTVDRIVG 93 (113)
T ss_pred CCCEEEEEEccc--CHHHHHHCCCccCCEEEEEECCEEEEEEEC
Confidence 469999999955 55999999999 99999999977755544
No 223
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=96.01 E-value=0.014 Score=51.25 Aligned_cols=48 Identities=8% Similarity=-0.033 Sum_probs=38.1
Q ss_pred hHHHhhcCCCCeEEEEeeecccCCcchhccCCc--------cceEEeeecCeeeEeecC
Q psy1110 16 PLAKEIVKPKAITLGLIERLTEKADPVCTREKA--------KKKVRRQKNAEVKYVYEN 66 (366)
Q Consensus 16 ~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I--------~Pti~~f~~g~~~~~y~g 66 (366)
.+|+++. ..+++|++|||+++ .++|.+++| .||+.+|++|+....+.|
T Consensus 71 ~la~~~~-~~~v~f~~VDvd~~--~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 71 ELSLKYN-NNNLKFGKIDIGRF--PNVAEKFRVSTSPLSKQLPTIILFQGGKEVARRPY 126 (152)
T ss_pred HHHHHcc-cCCeEEEEEECCCC--HHHHHHcCceecCCcCCCCEEEEEECCEEEEEEec
Confidence 4555554 23599999999664 499999999 499999999988877775
No 224
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=95.93 E-value=0.056 Score=46.08 Aligned_cols=43 Identities=21% Similarity=0.317 Sum_probs=35.4
Q ss_pred chhhhhhh--ccCCeEEEEEECCCChhhhcccHHHHHHHHHHhcc
Q psy1110 106 DDNFDLVI--QEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148 (366)
Q Consensus 106 ~~~~~~~i--~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~ 148 (366)
+...|+.| ++++.++|-|..+|-+.|..+-..+.+++.+.++-
T Consensus 8 ~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~ 52 (133)
T PF02966_consen 8 GWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF 52 (133)
T ss_dssp HHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT
T ss_pred cchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc
Confidence 45677766 55899999999999999999999999999987665
No 225
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=95.79 E-value=0.013 Score=44.88 Aligned_cols=24 Identities=29% Similarity=0.624 Sum_probs=20.1
Q ss_pred EEEEECCCChhhhcccHHHHHHHH
Q psy1110 120 LVMFYAPWCGHCKKLKPEYEEAAA 143 (366)
Q Consensus 120 lV~F~a~wC~~Ck~~~p~~e~la~ 143 (366)
++.|+++||++|..+...+.++..
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~ 25 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV 25 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC
Confidence 477899999999999888888744
No 226
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=95.79 E-value=0.02 Score=49.45 Aligned_cols=66 Identities=9% Similarity=-0.027 Sum_probs=51.0
Q ss_pred hHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeee-cCeeeEeecCCccHHHHHHHHhCcCCc
Q psy1110 16 PLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQK-NAEVKYVYENGNTKDKIIEFVRNPQAT 83 (366)
Q Consensus 16 ~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~-~g~~~~~y~g~r~~~~i~~fi~~~~~~ 83 (366)
.+++++. ..+.|..||.+.+...+++.+++|+ ||+.+|. +|.....+.|..+.+.|.+++......
T Consensus 44 ~l~~~~~--~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~~~ 112 (142)
T cd02950 44 KLKQKYG--DQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDALVAG 112 (142)
T ss_pred HHHHHhc--cCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHHcC
Confidence 4565655 4577777766555555899999999 9999995 677777888988899999998876664
No 227
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.65 E-value=0.029 Score=42.72 Aligned_cols=64 Identities=13% Similarity=0.198 Sum_probs=45.9
Q ss_pred CCCCCchHHHhhcC--CCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHHhC
Q psy1110 10 NKEDTSPLAKEIVK--PKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFVRN 79 (366)
Q Consensus 10 ~~~~~~~la~e~~~--~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi~~ 79 (366)
.+..+.+...++.+ +..+.+..||+.+ ..+++.++||+ ||+.+ +|. ..+.|..+.+.|.+++.+
T Consensus 13 ~C~~~~~~l~~l~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~vPt~~~--~g~--~~~~G~~~~~~l~~~l~~ 80 (82)
T TIGR00411 13 YCPAAKRVVEEVAKEMGDAVEVEYINVME--NPQKAMEYGIMAVPAIVI--NGD--VEFIGAPTKEELVEAIKK 80 (82)
T ss_pred chHHHHHHHHHHHHHhcCceEEEEEeCcc--CHHHHHHcCCccCCEEEE--CCE--EEEecCCCHHHHHHHHHh
Confidence 34444444433321 2569999999965 45999999999 99975 554 477898899999988865
No 228
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=95.62 E-value=0.023 Score=44.64 Aligned_cols=25 Identities=32% Similarity=0.478 Sum_probs=20.6
Q ss_pred EEEEECCCChhhhcccHHHHHHHHH
Q psy1110 120 LVMFYAPWCGHCKKLKPEYEEAAAT 144 (366)
Q Consensus 120 lV~F~a~wC~~Ck~~~p~~e~la~~ 144 (366)
++.|..+||++|.+....++++...
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~ 26 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIE 26 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcc
Confidence 6778999999999998888877543
No 229
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=95.53 E-value=0.021 Score=47.29 Aligned_cols=71 Identities=8% Similarity=0.016 Sum_probs=52.2
Q ss_pred cCCCCCCchHHHhhcCC-CCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeee--EeecCCccHHHHHHHHhCc
Q psy1110 8 TLNKEDTSPLAKEIVKP-KAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVK--YVYENGNTKDKIIEFVRNP 80 (366)
Q Consensus 8 ~~~~~~~~~la~e~~~~-~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~--~~y~g~r~~~~i~~fi~~~ 80 (366)
|-.+....++.++++.. ..|.+..||..+ ..+++.+++|+ ||+.+|++|+.. ..|.|-.....|.+|+...
T Consensus 34 C~~C~~~~~~l~~la~~~~~i~~~~vd~d~--~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~~el~~~i~~i 109 (113)
T cd02975 34 CQYCEVTKQLLEELSELSDKLKLEIYDFDE--DKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAGYEFASLIEDI 109 (113)
T ss_pred CCChHHHHHHHHHHHHhcCceEEEEEeCCc--CHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCchHHHHHHHHHH
Confidence 34555566666666632 469999999965 56999999999 999999976432 3677877777888887653
No 230
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=95.52 E-value=0.024 Score=41.05 Aligned_cols=20 Identities=35% Similarity=0.652 Sum_probs=16.4
Q ss_pred EEEEECCCChhhhcccHHHH
Q psy1110 120 LVMFYAPWCGHCKKLKPEYE 139 (366)
Q Consensus 120 lV~F~a~wC~~Ck~~~p~~e 139 (366)
++.|..+||++|++....|+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~ 20 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLD 20 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHH
T ss_pred cEEEEcCCCcCHHHHHHHHH
Confidence 46789999999998877773
No 231
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=95.39 E-value=0.1 Score=44.53 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=42.1
Q ss_pred eeEEEEecccccccccccccc--cCCeEEEecCCceeee-cCCCCCHHHHHHHHhCCCC
Q psy1110 268 GILAAVDVTREKSLGKRFDIK--GFPTLKYFRAGSVAFD-AGHLRDASRLVEFMRDPTE 323 (366)
Q Consensus 268 v~~a~vd~~~~~~l~~~~~I~--~~Ptl~~fk~G~~~~~-~~g~~~~e~l~~fi~~~~~ 323 (366)
+.|+.+|.+....+.+.|+|+ ++|+++++...+..+. +.|..+.++|.+|+.+...
T Consensus 58 i~Fv~vd~~~~~~~~~~fgl~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~ 116 (130)
T cd02983 58 WGWLWTEAGAQLDLEEALNIGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSY 116 (130)
T ss_pred EEEEEEeCcccHHHHHHcCCCccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHc
Confidence 456667777776788888985 4999999855432444 7799999999999987654
No 232
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=95.36 E-value=0.043 Score=49.21 Aligned_cols=58 Identities=14% Similarity=0.092 Sum_probs=42.8
Q ss_pred hHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecC-------CccHHHHHHHHhC
Q psy1110 16 PLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYEN-------GNTKDKIIEFVRN 79 (366)
Q Consensus 16 ~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g-------~r~~~~i~~fi~~ 79 (366)
.||+++ +.++|.+||+.. . +++.+++|+ ||+.+|++|.....+.| +.+.+.|..|+.+
T Consensus 107 ~LA~~~---~~vkF~kVd~d~--~-~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 107 CLAAEY---PAVKFCKIRASA--T-GASDEFDTDALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred HHHHHC---CCeEEEEEeccc--h-hhHHhCCCCCCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 455554 469999999954 4 799999999 99999999977655533 4566666666543
No 233
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=95.30 E-value=0.041 Score=42.36 Aligned_cols=25 Identities=32% Similarity=0.627 Sum_probs=20.2
Q ss_pred CCeEEEEEECCCChhhhcccHHHHH
Q psy1110 116 ESSVLVMFYAPWCGHCKKLKPEYEE 140 (366)
Q Consensus 116 ~k~vlV~F~a~wC~~Ck~~~p~~e~ 140 (366)
++.-++.|..+||++|.+....|++
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~ 30 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKE 30 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHH
Confidence 3445778999999999999888864
No 234
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=95.27 E-value=0.03 Score=47.72 Aligned_cols=68 Identities=13% Similarity=0.049 Sum_probs=55.3
Q ss_pred CchHHHhhcCCCC-eEEEEeeecccCCcchhccCCcc----ceEEeeecCeeeEe-ecCCccHHHHHHHHhCcCCcch
Q psy1110 14 TSPLAKEIVKPKA-ITLGLIERLTEKADPVCTREKAK----KKVRRQKNAEVKYV-YENGNTKDKIIEFVRNPQATSE 85 (366)
Q Consensus 14 ~~~la~e~~~~~~-I~~~~Vdc~~~~~~~lc~~~~I~----Pti~~f~~g~~~~~-y~g~r~~~~i~~fi~~~~~~~~ 85 (366)
...+|+.+. ++ +.|+-+|-.. +..+...+||. |+++++.....++. +.|+.|.++|.+|+.+...+..
T Consensus 46 l~~vAk~~k--gk~i~Fv~vd~~~--~~~~~~~fgl~~~~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 46 LKSVAEKFK--KKPWGWLWTEAGA--QLDLEEALNIGGFGYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred HHHHHHHhc--CCcEEEEEEeCcc--cHHHHHHcCCCccCCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence 346788877 66 9999999944 55799999996 99999987544555 7799999999999999888743
No 235
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=95.07 E-value=0.056 Score=46.93 Aligned_cols=64 Identities=13% Similarity=0.005 Sum_probs=45.0
Q ss_pred hHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--c-eEEeeecCe-eeEeecC--------CccHHHHHHHHhCcCCc
Q psy1110 16 PLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--K-KVRRQKNAE-VKYVYEN--------GNTKDKIIEFVRNPQAT 83 (366)
Q Consensus 16 ~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--P-ti~~f~~g~-~~~~y~g--------~r~~~~i~~fi~~~~~~ 83 (366)
.+|+++. ..+.|.+||.++.. +++.+++|+ | ++.+|++|+ ......| ..++++|++-+......
T Consensus 47 ~la~~~~--~~~~~~kVDVDe~~--dla~~y~I~~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~ 122 (142)
T PLN00410 47 SVAETIK--NFAVIYLVDITEVP--DFNTMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRG 122 (142)
T ss_pred HHHHHcC--CceEEEEEECCCCH--HHHHHcCccCCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHH
Confidence 4555554 56889999997655 999999999 4 455999987 4445556 35677777766554443
No 236
>PTZ00051 thioredoxin; Provisional
Probab=95.06 E-value=0.045 Score=43.20 Aligned_cols=41 Identities=12% Similarity=0.083 Sum_probs=35.6
Q ss_pred CCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCC
Q psy1110 25 KAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENG 67 (366)
Q Consensus 25 ~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~ 67 (366)
..+.+..|||.+ ..+++++++|+ ||+.+|++|.....+.|.
T Consensus 48 ~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~G~ 90 (98)
T PTZ00051 48 TKMVFVKVDVDE--LSEVAEKENITSMPTFKVFKNGSVVDTLLGA 90 (98)
T ss_pred CCcEEEEEECcc--hHHHHHHCCCceeeEEEEEeCCeEEEEEeCC
Confidence 459999999955 55999999999 999999999888888884
No 237
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=94.75 E-value=0.21 Score=40.38 Aligned_cols=44 Identities=14% Similarity=0.208 Sum_probs=32.0
Q ss_pred EEe-cchhhhhhhc-cCCeEEEEEECCCChhhhcccHHHHHHHHHHhcc
Q psy1110 102 VHL-TDDNFDLVIQ-EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148 (366)
Q Consensus 102 ~~l-~~~~~~~~i~-~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~ 148 (366)
..+ +.++++.++. ++..++|-|+..-=+ .....|.++|+.+.+.
T Consensus 3 ~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d 48 (102)
T cd03066 3 EIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPY 48 (102)
T ss_pred eEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcC
Confidence 445 4466889998 788888888876433 3566888888888666
No 238
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=94.31 E-value=0.0065 Score=49.45 Aligned_cols=20 Identities=5% Similarity=-0.092 Sum_probs=15.9
Q ss_pred CcceeeeccccccccccCCC
Q psy1110 240 RGWELRQVGTGKRIKSINSG 259 (366)
Q Consensus 240 ~~~~~~~c~~c~~~~p~~~~ 259 (366)
..|.+.||++|++..|.+.+
T Consensus 26 l~F~~~wC~~C~~~~p~l~~ 45 (114)
T cd02967 26 LFFLSPTCPVCKKLLPVIRS 45 (114)
T ss_pred EEEECCCCcchHhHhHHHHH
Confidence 34567789999999999744
No 239
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=94.26 E-value=0.15 Score=48.34 Aligned_cols=42 Identities=21% Similarity=0.353 Sum_probs=32.7
Q ss_pred cccccccccccccCCeEEEec-CCceeeecCCCCCHHHHHHHHh
Q psy1110 277 REKSLGKRFDIKGFPTLKYFR-AGSVAFDAGHLRDASRLVEFMR 319 (366)
Q Consensus 277 ~~~~l~~~~~I~~~Ptl~~fk-~G~~~~~~~g~~~~e~l~~fi~ 319 (366)
++..+...++|+|.|+|++-. +|. +....|..+.+.|.+.+.
T Consensus 207 ~n~~l~~~lGv~GTPaiv~~d~~G~-~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 207 DNQKLMDDLGANATPAIYYMDKDGT-LQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCC-EEEecCCCCHHHHHHHhC
Confidence 456788899999999999864 354 446778888998888764
No 240
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.15 E-value=0.27 Score=51.86 Aligned_cols=55 Identities=16% Similarity=0.123 Sum_probs=39.1
Q ss_pred eeEEEEecccccccccccccccCCeEEEec-CCce-eeecCCCCCHHHHHHHHhCCC
Q psy1110 268 GILAAVDVTREKSLGKRFDIKGFPTLKYFR-AGSV-AFDAGHLRDASRLVEFMRDPT 322 (366)
Q Consensus 268 v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk-~G~~-~~~~~g~~~~e~l~~fi~~~~ 322 (366)
+.+...|...+..++++|++...|++.+++ +|+. -.+|.|-..-.++-+||....
T Consensus 398 i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P~G~Ef~s~i~~i~ 454 (555)
T TIGR03143 398 LNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVPSGHELNSFILALY 454 (555)
T ss_pred EEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecCccHhHHHHHHHHH
Confidence 445556666777888999999999999984 5542 367777766666666665443
No 241
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=94.09 E-value=0.085 Score=44.66 Aligned_cols=39 Identities=28% Similarity=0.374 Sum_probs=31.2
Q ss_pred CCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEee
Q psy1110 116 ESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMG 155 (366)
Q Consensus 116 ~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~ 155 (366)
.+.+++.|+.++|++|.++.|.++++...+. ++.+...+
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~-~~~~~~~~ 43 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDP-DVRVVFKE 43 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCC-CceEEEEe
Confidence 5788999999999999999999999887764 44444443
No 242
>PHA03050 glutaredoxin; Provisional
Probab=94.06 E-value=0.077 Score=43.81 Aligned_cols=31 Identities=10% Similarity=0.241 Sum_probs=22.9
Q ss_pred hhhhhccCCeEEEEEECCCChhhhcccHHHHHH
Q psy1110 109 FDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEA 141 (366)
Q Consensus 109 ~~~~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~l 141 (366)
.++++++++ ++.|..+||++|++....|.++
T Consensus 6 v~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~ 36 (108)
T PHA03050 6 VQQRLANNK--VTIFVKFTCPFCRNALDILNKF 36 (108)
T ss_pred HHHHhccCC--EEEEECCCChHHHHHHHHHHHc
Confidence 344555544 6678999999999988877665
No 243
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=93.90 E-value=0.26 Score=43.44 Aligned_cols=65 Identities=15% Similarity=0.329 Sum_probs=48.9
Q ss_pred cCCCcCCCCCceEEecchhhhhhhccCCeEEEEEEC-CCChhhhcccHHHHHHHHHHhcc-ccEEEeeccCCcc
Q psy1110 90 KEQDWADTESEVVHLTDDNFDLVIQEESSVLVMFYA-PWCGHCKKLKPEYEEAAATMKQQ-RAYYGMGMLRHRP 161 (366)
Q Consensus 90 ~~~~~~~~~~~v~~l~~~~~~~~i~~~k~vlV~F~a-~wC~~Ck~~~p~~e~la~~~~~~-v~~~~v~~~~~~~ 161 (366)
+...+++..+..+.|++. .+++|+++||. .+++-|....-.|+....+|+.. ..++.|+.|....
T Consensus 11 PdF~Lp~~~g~~v~Lsd~-------~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~ 77 (157)
T COG1225 11 PDFELPDQDGETVSLSDL-------RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKS 77 (157)
T ss_pred CCeEeecCCCCEEehHHh-------cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHH
Confidence 334445556666666665 67899999994 57888999999999999999875 8888888775443
No 244
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=93.80 E-value=0.088 Score=41.53 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=45.8
Q ss_pred CchHHHhhcCCCCeEEEEeeecccCCcchhccCCcc-ceEEeeecC-eeeEeecCCccHHHHHHHHhC
Q psy1110 14 TSPLAKEIVKPKAITLGLIERLTEKADPVCTREKAK-KKVRRQKNA-EVKYVYENGNTKDKIIEFVRN 79 (366)
Q Consensus 14 ~~~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~-Pti~~f~~g-~~~~~y~g~r~~~~i~~fi~~ 79 (366)
...+|..++ ..+.||.+.- . ++..++++. |++.+|++. .....|.|+++.++|.+|+..
T Consensus 36 f~~~A~~~r--~~~~F~~~~~--~---~~~~~~~~~~~~i~l~~~~~~~~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 36 FEKVAESLR--DDYGFGHTSD--K---EVAKKLKVKPGSVVLFKPFEEEPVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred HHHHHHhcc--cCCeEEEECh--H---HHHHHcCCCCCceEEeCCcccCCccCCCCCCHHHHHHHHHh
Confidence 345676666 4688887774 2 477778888 999999874 556789999999999999964
No 245
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=93.67 E-value=0.093 Score=43.18 Aligned_cols=80 Identities=23% Similarity=0.337 Sum_probs=58.4
Q ss_pred cchhhhhhhcc--CCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCccc----ccccceee----eeec
Q psy1110 105 TDDNFDLVIQE--ESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQ----ASNVAVVS----SLRN 174 (366)
Q Consensus 105 ~~~~~~~~i~~--~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~~----~~~~~v~~----~l~~ 174 (366)
+.++++++++. +++++|.=.++.|+-.......|+...+...+.+.++.+++-+++++ ++.+|+.. +|.+
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili 85 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILI 85 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEE
Confidence 45788998866 78888877899999999888999999988887799999999877665 66788764 8999
Q ss_pred CCCcccccCC
Q psy1110 175 KNGEPTTHPS 184 (366)
Q Consensus 175 ~~G~~~~~~~ 184 (366)
+||+++.+-+
T Consensus 86 ~~g~~v~~aS 95 (105)
T PF11009_consen 86 KNGKVVWHAS 95 (105)
T ss_dssp ETTEEEEEEE
T ss_pred ECCEEEEECc
Confidence 9999887653
No 246
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=93.59 E-value=0.066 Score=40.35 Aligned_cols=21 Identities=14% Similarity=0.401 Sum_probs=17.1
Q ss_pred EEEEECCCChhhhcccHHHHH
Q psy1110 120 LVMFYAPWCGHCKKLKPEYEE 140 (366)
Q Consensus 120 lV~F~a~wC~~Ck~~~p~~e~ 140 (366)
++.|..+||++|++.+..|++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~ 23 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE 23 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH
Confidence 566788999999988877775
No 247
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=93.41 E-value=0.16 Score=42.75 Aligned_cols=71 Identities=8% Similarity=-0.011 Sum_probs=51.2
Q ss_pred cCCCCCCchHHHhhcCCCCeEEEEeeecccCC---------cchhccCC----cc--ceEEeeecCeeeEeecC-CccHH
Q psy1110 8 TLNKEDTSPLAKEIVKPKAITLGLIERLTEKA---------DPVCTREK----AK--KKVRRQKNAEVKYVYEN-GNTKD 71 (366)
Q Consensus 8 ~~~~~~~~~la~e~~~~~~I~~~~Vdc~~~~~---------~~lc~~~~----I~--Pti~~f~~g~~~~~y~g-~r~~~ 71 (366)
|-.+...+|.-+++.+..++.+..||-..++. .++..+++ |. ||+.+|++|+......| ..+.+
T Consensus 35 Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~ 114 (122)
T TIGR01295 35 CPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQ 114 (122)
T ss_pred ChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEEEEEeCCCCCHH
Confidence 34556677777777766778888888864321 24555555 44 99999999988888878 55799
Q ss_pred HHHHHHh
Q psy1110 72 KIIEFVR 78 (366)
Q Consensus 72 ~i~~fi~ 78 (366)
+|.+|+.
T Consensus 115 ~l~~~~~ 121 (122)
T TIGR01295 115 ELQDIAA 121 (122)
T ss_pred HHHHHhh
Confidence 9999874
No 248
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=93.37 E-value=0.42 Score=38.81 Aligned_cols=41 Identities=24% Similarity=0.452 Sum_probs=30.7
Q ss_pred cchhhhhhhccCCeEEEEEECCCChhhhcccHHHHHHHHHHhcc
Q psy1110 105 TDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148 (366)
Q Consensus 105 ~~~~~~~~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~ 148 (366)
+.++++.++..++.++|-|+..--. ....++.++|+.+.+.
T Consensus 7 s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d 47 (104)
T cd03069 7 TEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRES 47 (104)
T ss_pred CHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhc
Confidence 3456788888888888888876433 4677888899888766
No 249
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=93.32 E-value=0.12 Score=43.24 Aligned_cols=45 Identities=9% Similarity=-0.051 Sum_probs=34.1
Q ss_pred hHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeee-Eee
Q psy1110 16 PLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVK-YVY 64 (366)
Q Consensus 16 ~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~-~~y 64 (366)
.||.++. ..+.|.+||.++.. +++.+++|+ ||..+|++|... ..|
T Consensus 38 ela~~~~--~~~~f~kVDVDev~--dva~~y~I~amPtfvffkngkh~~~d~ 85 (114)
T cd02986 38 KTSHDLS--KMASIYLVDVDKVP--VYTQYFDISYIPSTIFFFNGQHMKVDY 85 (114)
T ss_pred HHHHHcc--CceEEEEEeccccH--HHHHhcCceeCcEEEEEECCcEEEEec
Confidence 4454443 23999999997755 999999999 999999988544 444
No 250
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=92.77 E-value=0.22 Score=37.30 Aligned_cols=21 Identities=19% Similarity=0.521 Sum_probs=16.8
Q ss_pred EEEEECCCChhhhcccHHHHH
Q psy1110 120 LVMFYAPWCGHCKKLKPEYEE 140 (366)
Q Consensus 120 lV~F~a~wC~~Ck~~~p~~e~ 140 (366)
++.|..+||++|.+....|++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~ 22 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK 22 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 467888999999988777765
No 251
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=92.76 E-value=0.15 Score=38.86 Aligned_cols=21 Identities=19% Similarity=0.611 Sum_probs=16.5
Q ss_pred EEEECCCChhhhcccHHHHHH
Q psy1110 121 VMFYAPWCGHCKKLKPEYEEA 141 (366)
Q Consensus 121 V~F~a~wC~~Ck~~~p~~e~l 141 (366)
+.|+.+||++|.+....+++.
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~ 22 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK 22 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc
Confidence 567889999998888887653
No 252
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=92.69 E-value=0.41 Score=35.76 Aligned_cols=21 Identities=29% Similarity=0.684 Sum_probs=17.0
Q ss_pred EEEEECCCChhhhcccHHHHH
Q psy1110 120 LVMFYAPWCGHCKKLKPEYEE 140 (366)
Q Consensus 120 lV~F~a~wC~~Ck~~~p~~e~ 140 (366)
++.|..+||++|.+.+..+.+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~ 23 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE 23 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 567888999999988777764
No 253
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=92.44 E-value=0.17 Score=44.29 Aligned_cols=43 Identities=14% Similarity=0.373 Sum_probs=36.6
Q ss_pred cCCeEEEEEECCCChhhhcccHHHHHHHHHHhccccEEEeecc
Q psy1110 115 EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGML 157 (366)
Q Consensus 115 ~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~ 157 (366)
.+++.++.|+...|+||..+.+.+..+.+++.+.+.+..+.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~~ 56 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPVV 56 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCCc
Confidence 4688899999999999999999999999998777766655543
No 254
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=92.30 E-value=0.24 Score=37.21 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=14.8
Q ss_pred EEEECCCChhhhcccHHHHH
Q psy1110 121 VMFYAPWCGHCKKLKPEYEE 140 (366)
Q Consensus 121 V~F~a~wC~~Ck~~~p~~e~ 140 (366)
+.|..++|++|.+.+..+++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~ 21 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE 21 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 45677888888887777754
No 255
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=92.25 E-value=0.19 Score=41.55 Aligned_cols=66 Identities=11% Similarity=0.044 Sum_probs=51.6
Q ss_pred CchHHHh---hcCCCCeEEEEeeecccCCcchhccCCcc----ceEEeeecCe-eeEe-ecCCccHHHHHHHHhCcCCc
Q psy1110 14 TSPLAKE---IVKPKAITLGLIERLTEKADPVCTREKAK----KKVRRQKNAE-VKYV-YENGNTKDKIIEFVRNPQAT 83 (366)
Q Consensus 14 ~~~la~e---~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~----Pti~~f~~g~-~~~~-y~g~r~~~~i~~fi~~~~~~ 83 (366)
...+|++ .. ++|.|+-+|-.. +......+|++ |.+++..... .++. +.+..+.++|.+|+.+...+
T Consensus 36 ~~~vAk~~~~~k--gki~Fv~~d~~~--~~~~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~G 110 (111)
T cd03072 36 KQAVARQLISEK--GAINFLTADGDK--FRHPLLHLGKTPADLPVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSG 110 (111)
T ss_pred HHHHHHHHHhcC--ceEEEEEEechH--hhhHHHHcCCCHhHCCEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhcC
Confidence 3567888 55 889999999955 44689999999 9998888643 3555 56889999999999886653
No 256
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=92.12 E-value=0.36 Score=40.05 Aligned_cols=65 Identities=8% Similarity=0.023 Sum_probs=48.5
Q ss_pred hHHHhhcCCCCeEEEEeeeccc-----------CCcchhccCCcc--ceEEeeecC--eeeEeecCCccHHHHHHHHhCc
Q psy1110 16 PLAKEIVKPKAITLGLIERLTE-----------KADPVCTREKAK--KKVRRQKNA--EVKYVYENGNTKDKIIEFVRNP 80 (366)
Q Consensus 16 ~la~e~~~~~~I~~~~Vdc~~~-----------~~~~lc~~~~I~--Pti~~f~~g--~~~~~y~g~r~~~~i~~fi~~~ 80 (366)
.+++.+. ..+.+..||.... ...+++.+++|+ ||+.+|.++ .....+.|..+.+.+.+++...
T Consensus 41 ~~~~~~~--~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~ 118 (125)
T cd02951 41 AVQAYIR--AHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYV 118 (125)
T ss_pred HHHHHHH--hheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHH
Confidence 4555555 4688888887543 124799999999 999999975 6667888988888888887654
Q ss_pred CC
Q psy1110 81 QA 82 (366)
Q Consensus 81 ~~ 82 (366)
..
T Consensus 119 ~~ 120 (125)
T cd02951 119 QE 120 (125)
T ss_pred Hh
Confidence 43
No 257
>KOG3171|consensus
Probab=91.62 E-value=0.7 Score=42.69 Aligned_cols=48 Identities=23% Similarity=0.269 Sum_probs=36.1
Q ss_pred ceEEecc-hhhhhhhccC---CeEEEEEECCCChhhhcccHHHHHHHHHHhc
Q psy1110 100 EVVHLTD-DNFDLVIQEE---SSVLVMFYAPWCGHCKKLKPEYEEAAATMKQ 147 (366)
Q Consensus 100 ~v~~l~~-~~~~~~i~~~---k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~ 147 (366)
.|.+|++ +.|-+.|.+. -.++|..|-+.-.-|..+...+.-||..|..
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~ 190 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI 190 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc
Confidence 5777765 7777777443 4566788999888898998888888887754
No 258
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=91.60 E-value=0.31 Score=39.42 Aligned_cols=29 Identities=21% Similarity=0.388 Sum_probs=20.6
Q ss_pred hhhccCCeEEEEEECCCChhhhcccHHHHHH
Q psy1110 111 LVIQEESSVLVMFYAPWCGHCKKLKPEYEEA 141 (366)
Q Consensus 111 ~~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~l 141 (366)
++|+++. ++.|..+||++|.+....|.++
T Consensus 3 ~~i~~~~--Vvvysk~~Cp~C~~ak~~L~~~ 31 (99)
T TIGR02189 3 RMVSEKA--VVIFSRSSCCMCHVVKRLLLTL 31 (99)
T ss_pred hhhccCC--EEEEECCCCHHHHHHHHHHHHc
Confidence 3444433 5668999999999888766654
No 259
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=91.29 E-value=0.49 Score=38.07 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=21.5
Q ss_pred hhhhhhccCCeEEEEEE---CCCChhhhcccHHHHHH
Q psy1110 108 NFDLVIQEESSVLVMFY---APWCGHCKKLKPEYEEA 141 (366)
Q Consensus 108 ~~~~~i~~~k~vlV~F~---a~wC~~Ck~~~p~~e~l 141 (366)
..++++++++.++..=. ++||++|.+....|.++
T Consensus 4 ~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~ 40 (97)
T TIGR00365 4 RIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKAC 40 (97)
T ss_pred HHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHc
Confidence 34556666554333222 38999999888777664
No 260
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=91.15 E-value=0.49 Score=43.07 Aligned_cols=55 Identities=11% Similarity=0.099 Sum_probs=39.9
Q ss_pred hHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecC-------CccHHHHHHHHh
Q psy1110 16 PLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYEN-------GNTKDKIIEFVR 78 (366)
Q Consensus 16 ~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g-------~r~~~~i~~fi~ 78 (366)
.||+.+ ..++|.+||.. . .+.+++|+ ||+.+|++|.....+-| ..+.+.|..++.
T Consensus 126 ~LA~k~---~~vkFvkI~ad--~---~~~~~~i~~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~ 189 (192)
T cd02988 126 ELARKF---PDTKFVKIIST--Q---CIPNYPDKNLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLV 189 (192)
T ss_pred HHHHHC---CCCEEEEEEhH--H---hHhhCCCCCCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHH
Confidence 455553 36999999993 3 36889999 99999999987766654 446666666654
No 261
>KOG2501|consensus
Probab=91.04 E-value=0.044 Score=48.21 Aligned_cols=69 Identities=16% Similarity=0.300 Sum_probs=47.8
Q ss_pred CCCCcCCcceeeeccccccccccCCCCCCCCc-----cceeEEEEec-----------------------cccccccccc
Q psy1110 234 RPESVGRGWELRQVGTGKRIKSINSGSFSPRQ-----ITGILAAVDV-----------------------TREKSLGKRF 285 (366)
Q Consensus 234 ~~~~~~~~~~~~~c~~c~~~~p~~~~~~~~~~-----~~v~~a~vd~-----------------------~~~~~l~~~~ 285 (366)
..+-++.+|.+.||+.|+.++|+|.+-|...+ ..|.|.--|. .....++.+|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 34568899999999999999999744333321 2244444441 1223667799
Q ss_pred ccccCCeEEEe-cCCcee
Q psy1110 286 DIKGFPTLKYF-RAGSVA 302 (366)
Q Consensus 286 ~I~~~Ptl~~f-k~G~~~ 302 (366)
+|.++|++++. .+|..+
T Consensus 112 ~v~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVV 129 (157)
T ss_pred ccCcCceeEEecCCCCEe
Confidence 99999999887 678755
No 262
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=90.86 E-value=0.23 Score=35.98 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=28.2
Q ss_pred EEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcc
Q psy1110 120 LVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRP 161 (366)
Q Consensus 120 lV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~ 161 (366)
++.|.++||++|+++...+++.. +.+..+|++.+..
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~ 37 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGE 37 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHH
Confidence 56789999999999999888764 5666777766554
No 263
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=90.35 E-value=0.52 Score=40.40 Aligned_cols=43 Identities=16% Similarity=0.247 Sum_probs=36.1
Q ss_pred CCeEEEEEECCCChhhhcccHHHHHHHHHH--hccccEEEeeccC
Q psy1110 116 ESSVLVMFYAPWCGHCKKLKPEYEEAAATM--KQQRAYYGMGMLR 158 (366)
Q Consensus 116 ~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~--~~~v~~~~v~~~~ 158 (366)
.+++|+.|+...|++|.++.+.+.++.+++ .+++.+...++-.
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~ 56 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPL 56 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSS
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccc
Confidence 578899999999999999999999999998 6678888777643
No 264
>PRK10329 glutaredoxin-like protein; Provisional
Probab=90.22 E-value=0.83 Score=35.49 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=16.0
Q ss_pred EEEEECCCChhhhcccHHHHH
Q psy1110 120 LVMFYAPWCGHCKKLKPEYEE 140 (366)
Q Consensus 120 lV~F~a~wC~~Ck~~~p~~e~ 140 (366)
++.|..+||++|...+..|++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~ 23 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES 23 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH
Confidence 567788999999887777643
No 265
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=89.84 E-value=0.43 Score=37.80 Aligned_cols=62 Identities=13% Similarity=0.008 Sum_probs=46.9
Q ss_pred ccCCCCCCchHHHhhcCC-CCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHH
Q psy1110 7 GTLNKEDTSPLAKEIVKP-KAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKII 74 (366)
Q Consensus 7 ~~~~~~~~~~la~e~~~~-~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~ 74 (366)
++-++..+.+++.++... ++|++..+|-++ +.+++.++||. ||+.+ +|+ ..+.|..+.+.++
T Consensus 23 ~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~--~~e~a~~~~V~~vPt~vi--dG~--~~~~G~~~~~e~~ 87 (89)
T cd03026 23 SCHNCPDVVQALNLMAVLNPNIEHEMIDGAL--FQDEVEERGIMSVPAIFL--NGE--LFGFGRMTLEEIL 87 (89)
T ss_pred CCCCcHHHHHHHHHHHHHCCCceEEEEEhHh--CHHHHHHcCCccCCEEEE--CCE--EEEeCCCCHHHHh
Confidence 467788888888888754 379999999855 55999999999 99953 665 3445766666654
No 266
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=89.66 E-value=0.4 Score=36.70 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=30.6
Q ss_pred EEEEECCCChhhhcccHHHHHHHHHHhccccEEEeecc
Q psy1110 120 LVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGML 157 (366)
Q Consensus 120 lV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~ 157 (366)
++.|+.+.|++|..+.+.++++.....+++.+....+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFP 38 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccc
Confidence 46799999999999999999998666677666655543
No 267
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=89.58 E-value=1.2 Score=37.75 Aligned_cols=69 Identities=17% Similarity=0.180 Sum_probs=47.4
Q ss_pred CchHHHhh-cCCCCeEEEEeeec---ccCCcchhccCCcc----ceEEeeecC-eeeEee--cCCccHHHHHHHHhCcCC
Q psy1110 14 TSPLAKEI-VKPKAITLGLIERL---TEKADPVCTREKAK----KKVRRQKNA-EVKYVY--ENGNTKDKIIEFVRNPQA 82 (366)
Q Consensus 14 ~~~la~e~-~~~~~I~~~~Vdc~---~~~~~~lc~~~~I~----Pti~~f~~g-~~~~~y--~g~r~~~~i~~fi~~~~~ 82 (366)
...+|+|- +....+-+|.|--. +....+|+.+|+|. |.+.+|..+ .....| .|+.+.++|..|++....
T Consensus 41 F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 41 FKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp HHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred HHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 34688554 44567888877542 22356899999996 999999944 556777 789999999999987644
No 268
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=89.42 E-value=0.73 Score=35.65 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=35.1
Q ss_pred eeEEEEecccccccccccccccCCeEEEecCCc----eeeecCCCCCHHHHHHHHh
Q psy1110 268 GILAAVDVTREKSLGKRFDIKGFPTLKYFRAGS----VAFDAGHLRDASRLVEFMR 319 (366)
Q Consensus 268 v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~----~~~~~~g~~~~e~l~~fi~ 319 (366)
+.+-.+|.+.+..+..+|+. .+|.+.+ +|. ......+..+.+.|.+||+
T Consensus 29 ~~l~~vDI~~d~~l~~~Y~~-~IPVl~~--~~~~~~~~~~~~~~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 29 FELEEVDIDEDPELFEKYGY-RIPVLHI--DGIRQFKEQEELKWRFDEEQLRAWLE 81 (81)
T ss_dssp CEEEEEETTTTHHHHHHSCT-STSEEEE--TT-GGGCTSEEEESSB-HHHHHHHHH
T ss_pred ceEEEEECCCCHHHHHHhcC-CCCEEEE--cCcccccccceeCCCCCHHHHHHHhC
Confidence 56778888888899999995 7999887 441 1233445678888888874
No 269
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=89.37 E-value=0.38 Score=44.03 Aligned_cols=42 Identities=12% Similarity=0.383 Sum_probs=35.4
Q ss_pred CCeEEEEEECCCChhhhcccHHH---HHHHHHHhccccEEEeecc
Q psy1110 116 ESSVLVMFYAPWCGHCKKLKPEY---EEAAATMKQQRAYYGMGML 157 (366)
Q Consensus 116 ~k~vlV~F~a~wC~~Ck~~~p~~---e~la~~~~~~v~~~~v~~~ 157 (366)
+++.+|.|+...|+||..+.+.+ +.+.+.+.+.+.++.+++.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~~ 81 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHVE 81 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEeccc
Confidence 46779999999999999999876 8888888888777776653
No 270
>KOG0913|consensus
Probab=89.23 E-value=0.44 Score=44.51 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=48.6
Q ss_pred CCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHHhCcCCcchhh
Q psy1110 25 KAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFVRNPQATSEEV 87 (366)
Q Consensus 25 ~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi~~~~~~~~~~ 87 (366)
-+|++|.||.+.+- .|..++=|+ |||.=-+.|. --.|.|.|+..++++|+....-....|
T Consensus 71 L~v~va~VDvt~np--gLsGRF~vtaLptIYHvkDGe-FrrysgaRdk~dfisf~~~r~w~~i~p 132 (248)
T KOG0913|consen 71 LGVKVAKVDVTTNP--GLSGRFLVTALPTIYHVKDGE-FRRYSGARDKNDFISFEEHREWQSIDP 132 (248)
T ss_pred CceeEEEEEEEecc--ccceeeEEEecceEEEeeccc-cccccCcccchhHHHHHHhhhhhccCC
Confidence 36999999998866 899999999 9997666665 457899999999999998765544443
No 271
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=89.22 E-value=0.6 Score=38.63 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=47.3
Q ss_pred chHHHhhcCCCCeEEEEeeecccCCcchhccCCcc------ceEEeeecCeeeEeecCCc-cHHHHHHHHhCc
Q psy1110 15 SPLAKEIVKPKAITLGLIERLTEKADPVCTREKAK------KKVRRQKNAEVKYVYENGN-TKDKIIEFVRNP 80 (366)
Q Consensus 15 ~~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~------Pti~~f~~g~~~~~y~g~r-~~~~i~~fi~~~ 80 (366)
.++|+.++. ++|.|+-+|-.. +......+|++ |+++++.....++.++++. |.++|.+|+.+.
T Consensus 41 ~~vAk~fk~-gki~Fv~~D~~~--~~~~l~~fgl~~~~~~~P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 41 LKVAKDFPD-RKLNFAVADKED--FSHELEEFGLDFSGGEKPVVAIRTAKGKKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred HHHHHHCcC-CeEEEEEEcHHH--HHHHHHHcCCCcccCCCCEEEEEeCCCCccCCCcccCCHHHHHHHHHHh
Confidence 457777762 479999999965 44677888875 8999887543455567888 999999999764
No 272
>KOG0908|consensus
Probab=87.70 E-value=0.89 Score=43.03 Aligned_cols=66 Identities=8% Similarity=0.015 Sum_probs=47.1
Q ss_pred chHHHhhcCC-CCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHHhCcCCc
Q psy1110 15 SPLAKEIVKP-KAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFVRNPQAT 83 (366)
Q Consensus 15 ~~la~e~~~~-~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi~~~~~~ 83 (366)
+|+-..|+.. .+-.|.+||.++ |+..+..+||. ||+.+|+||..+..++| -+...|.+-+.++...
T Consensus 40 aP~Fs~lankYp~aVFlkVdVd~--c~~taa~~gV~amPTFiff~ng~kid~~qG-Ad~~gLe~kv~~~~st 108 (288)
T KOG0908|consen 40 APIFSDLANKYPGAVFLKVDVDE--CRGTAATNGVNAMPTFIFFRNGVKIDQIQG-ADASGLEEKVAKYAST 108 (288)
T ss_pred hhHHHHhhhhCcccEEEEEeHHH--hhchhhhcCcccCceEEEEecCeEeeeecC-CCHHHHHHHHHHHhcc
Confidence 3444444422 578899999944 88999999999 99999999988888888 2344455555444443
No 273
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=87.43 E-value=0.73 Score=36.34 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=19.6
Q ss_pred hhhhccCCeEEEEEE---CCCChhhhcccHHHHHH
Q psy1110 110 DLVIQEESSVLVMFY---APWCGHCKKLKPEYEEA 141 (366)
Q Consensus 110 ~~~i~~~k~vlV~F~---a~wC~~Ck~~~p~~e~l 141 (366)
+++|++++.++..=. .+||++|.+....+.+.
T Consensus 2 ~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~ 36 (90)
T cd03028 2 KKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQL 36 (90)
T ss_pred hhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc
Confidence 345655444333211 26999999888777665
No 274
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=86.95 E-value=1.8 Score=33.52 Aligned_cols=20 Identities=25% Similarity=0.614 Sum_probs=15.3
Q ss_pred EEEEECCCChhhhcccHHHH
Q psy1110 120 LVMFYAPWCGHCKKLKPEYE 139 (366)
Q Consensus 120 lV~F~a~wC~~Ck~~~p~~e 139 (366)
++.|-.++|++|++....|.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~ 22 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD 22 (80)
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 45677888999988777766
No 275
>KOG2640|consensus
Probab=86.52 E-value=0.46 Score=46.13 Aligned_cols=45 Identities=20% Similarity=0.190 Sum_probs=36.7
Q ss_pred ccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhCCCC
Q psy1110 278 EKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTE 323 (366)
Q Consensus 278 ~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~~~~ 323 (366)
...+..+|++.+.|++.+.. -....+|.|.++..+|++|..+.+.
T Consensus 119 lpsv~s~~~~~~~ps~~~~n-~t~~~~~~~~r~l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 119 LPSVFSSYGIHSEPSNLMLN-QTCPASYRGERDLASLVNFYTEITP 163 (319)
T ss_pred cccchhccccccCCcceeec-cccchhhcccccHHHHHHHHHhhcc
Confidence 34667889999999988753 3446899999999999999988774
No 276
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=86.45 E-value=0.26 Score=35.69 Aligned_cols=54 Identities=13% Similarity=0.081 Sum_probs=36.0
Q ss_pred ceeeeccccccccccCCCCCCCCccceeEEEEeccccccc----ccccccccCCeEEEecCCceee
Q psy1110 242 WELRQVGTGKRIKSINSGSFSPRQITGILAAVDVTREKSL----GKRFDIKGFPTLKYFRAGSVAF 303 (366)
Q Consensus 242 ~~~~~c~~c~~~~p~~~~~~~~~~~~v~~a~vd~~~~~~l----~~~~~I~~~Ptl~~fk~G~~~~ 303 (366)
|...||++|.++...|.+. ++.+..+|...+... .+..+...+|++++ +|+.+.
T Consensus 5 y~~~~Cp~C~~~~~~L~~~------~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~--~~~~ig 62 (72)
T cd02066 5 FSKSTCPYCKRAKRLLESL------GIEFEEIDILEDGELREELKELSGWPTVPQIFI--NGEFIG 62 (72)
T ss_pred EECCCCHHHHHHHHHHHHc------CCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEEe
Confidence 5677899999999998533 255667777655433 33345567787755 787554
No 277
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=86.11 E-value=1.7 Score=46.53 Aligned_cols=63 Identities=16% Similarity=0.215 Sum_probs=43.3
Q ss_pred ecchhhhhhhccCCeEEEEEECCCChhhhcccHH-H--HHHHHHHhccccEEEeeccCCccccccc
Q psy1110 104 LTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPE-Y--EEAAATMKQQRAYYGMGMLRHRPQASNV 166 (366)
Q Consensus 104 l~~~~~~~~i~~~k~vlV~F~a~wC~~Ck~~~p~-~--e~la~~~~~~v~~~~v~~~~~~~~~~~~ 166 (366)
-..+.|.+.-..++|+++....+||-.|.-|... | .++|..++.+..-++||.+|-+++.+.|
T Consensus 31 W~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Y 96 (667)
T COG1331 31 WGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLY 96 (667)
T ss_pred cCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHH
Confidence 3457788888889999999999999999877542 2 5666667666444455544444443333
No 278
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=84.99 E-value=1.5 Score=35.33 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=42.8
Q ss_pred chHHHhhcCCCCeEEEEeeecccCCcchhccCCcc-ceEEeeec-CeeeEee-cCCccHHHHHHHHhCc
Q psy1110 15 SPLAKEIVKPKAITLGLIERLTEKADPVCTREKAK-KKVRRQKN-AEVKYVY-ENGNTKDKIIEFVRNP 80 (366)
Q Consensus 15 ~~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~-Pti~~f~~-g~~~~~y-~g~r~~~~i~~fi~~~ 80 (366)
..+|..++ ....|+...- . ++...+++. |++.+|++ .+....| .|..+.+.|.+|+...
T Consensus 39 ~~vA~~~R--~d~~F~~~~~--~---~~~~~~~~~~~~i~l~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 39 EEAAEEFH--PYIKFFATFD--S---KVAKKLGLKMNEVDFYEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred HHHHHhhh--cCCEEEEECc--H---HHHHHcCCCCCcEEEeCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 45666666 4566765554 1 366777888 99999986 5555679 7788999999999754
No 279
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=84.48 E-value=3.1 Score=39.89 Aligned_cols=61 Identities=15% Similarity=0.133 Sum_probs=43.3
Q ss_pred hHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecC-------CccHHHHHHHHhCcCC
Q psy1110 16 PLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYEN-------GNTKDKIIEFVRNPQA 82 (366)
Q Consensus 16 ~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g-------~r~~~~i~~fi~~~~~ 82 (366)
.||+.+ ..|+|.+|.. +.+ .++.++.+. |||.+|++|.....+-| +.+.+.|-.|+.++..
T Consensus 170 ~LA~ky---p~vKFvkI~a--~~~-~~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~ 239 (265)
T PF02114_consen 170 CLARKY---PEVKFVKIRA--SKC-PASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGV 239 (265)
T ss_dssp HHHHH----TTSEEEEEEE--CGC-CTTTTS-TTC-SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTTS
T ss_pred HHHHhC---CceEEEEEeh--hcc-CcccCCcccCCCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCC
Confidence 456554 4799999998 444 378899888 99999999977655532 6678889999987654
No 280
>PRK10638 glutaredoxin 3; Provisional
Probab=84.11 E-value=1.8 Score=33.26 Aligned_cols=22 Identities=14% Similarity=0.407 Sum_probs=16.4
Q ss_pred EEEEECCCChhhhcccHHHHHH
Q psy1110 120 LVMFYAPWCGHCKKLKPEYEEA 141 (366)
Q Consensus 120 lV~F~a~wC~~Ck~~~p~~e~l 141 (366)
++.|..+||++|.+....+++.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~ 25 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK 25 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc
Confidence 4567778999998887777653
No 281
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=83.73 E-value=2.1 Score=37.27 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=35.5
Q ss_pred CCeEEEEEE-CCCChhhhcc-cHHHHHHHHHHhcc-c-cEEEeeccCCcc
Q psy1110 116 ESSVLVMFY-APWCGHCKKL-KPEYEEAAATMKQQ-R-AYYGMGMLRHRP 161 (366)
Q Consensus 116 ~k~vlV~F~-a~wC~~Ck~~-~p~~e~la~~~~~~-v-~~~~v~~~~~~~ 161 (366)
++++++.|| +.||+.|... .+.|.+.+.++... + .++.++++....
T Consensus 29 gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~ 78 (155)
T cd03013 29 GKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFV 78 (155)
T ss_pred CCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHH
Confidence 345555555 7799999998 99999999999765 5 588888886554
No 282
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=82.91 E-value=0.6 Score=43.43 Aligned_cols=41 Identities=20% Similarity=0.363 Sum_probs=31.0
Q ss_pred ccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhCC
Q psy1110 276 TREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDP 321 (366)
Q Consensus 276 ~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~~ 321 (366)
.++..+...++|++.||+++ +|+ .+.|..+.+.|.+.|...
T Consensus 202 ~~~~~~a~~~gv~gTPt~~v--~~~---~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 202 AKNYKLAQQLGVNGTPTFIV--NGK---LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHHHHHhcCCCcCCeEEE--CCe---eecCCCCHHHHHHHHHHh
Confidence 34557788999999999998 555 677777788877776543
No 283
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=82.69 E-value=1.8 Score=45.97 Aligned_cols=61 Identities=3% Similarity=-0.058 Sum_probs=46.8
Q ss_pred hHHHhhcCCCCeEEEEeeeccc--CCcchhccCCcc--ceEEeee-cCee--eEeecCCccHHHHHHHHhC
Q psy1110 16 PLAKEIVKPKAITLGLIERLTE--KADPVCTREKAK--KKVRRQK-NAEV--KYVYENGNTKDKIIEFVRN 79 (366)
Q Consensus 16 ~la~e~~~~~~I~~~~Vdc~~~--~~~~lc~~~~I~--Pti~~f~-~g~~--~~~y~g~r~~~~i~~fi~~ 79 (366)
++++++. ++.+.++|.+.+ ...+++++++|. ||+.+|+ +|+. ...+.|.++.+++.+++++
T Consensus 501 ~v~~~l~---~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~ 568 (571)
T PRK00293 501 QVQQALA---DTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQ 568 (571)
T ss_pred HHHHHhc---CCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHH
Confidence 4555553 588999998653 245899999999 9999997 4554 2567899999999999875
No 284
>PRK10824 glutaredoxin-4; Provisional
Probab=80.57 E-value=2.7 Score=35.16 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=22.1
Q ss_pred hhhhhhhccCCeEEEEEE---CCCChhhhcccHHHHHH
Q psy1110 107 DNFDLVIQEESSVLVMFY---APWCGHCKKLKPEYEEA 141 (366)
Q Consensus 107 ~~~~~~i~~~k~vlV~F~---a~wC~~Ck~~~p~~e~l 141 (366)
+.++++|++++.++..=. .|||++|.+....|..+
T Consensus 6 ~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 6 EKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred HHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHc
Confidence 345567766554433221 15999999888877665
No 285
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=80.40 E-value=1.4 Score=32.17 Aligned_cols=46 Identities=11% Similarity=-0.001 Sum_probs=34.5
Q ss_pred ccCCCCCCchHHHhhcCC-CCeEEEEeeecccCCcchhccCCcc--ceEEe
Q psy1110 7 GTLNKEDTSPLAKEIVKP-KAITLGLIERLTEKADPVCTREKAK--KKVRR 54 (366)
Q Consensus 7 ~~~~~~~~~~la~e~~~~-~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~ 54 (366)
++-.+..+.++.+++... .+|.+..+|..++ .+++.++||. ||+.+
T Consensus 10 ~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~--~~l~~~~~i~~vPti~i 58 (67)
T cd02973 10 TCPYCPDAVQAANRIAALNPNISAEMIDAAEF--PDLADEYGVMSVPAIVI 58 (67)
T ss_pred CCCCcHHHHHHHHHHHHhCCceEEEEEEcccC--HhHHHHcCCcccCEEEE
Confidence 345566677777777543 4699999999664 4899999998 99854
No 286
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=80.21 E-value=4.1 Score=30.90 Aligned_cols=59 Identities=14% Similarity=0.098 Sum_probs=39.1
Q ss_pred cCCCCCCch----HHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCC-ccHHHHHHHH
Q psy1110 8 TLNKEDTSP----LAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENG-NTKDKIIEFV 77 (366)
Q Consensus 8 ~~~~~~~~~----la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~-r~~~~i~~fi 77 (366)
+=++..+.+ +++++. ..+.+.+||-. +.+.++||. ||+.+ +|+.. +.|. .+.+.|.+++
T Consensus 10 C~~C~~~~~~~~~~~~e~~--~~~~~~~v~~~-----~~a~~~~v~~vPti~i--~G~~~--~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 10 CANCQMTEKNVKKAVEELG--IDAEFEKVTDM-----NEILEAGVTATPGVAV--DGELV--IMGKIPSKEEIKEIL 75 (76)
T ss_pred CcCHHHHHHHHHHHHHHcC--CCeEEEEeCCH-----HHHHHcCCCcCCEEEE--CCEEE--EEeccCCHHHHHHHh
Confidence 344555544 555544 56888888831 357889999 99988 67544 6774 4657787775
No 287
>KOG3170|consensus
Probab=80.16 E-value=6.9 Score=35.98 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=40.9
Q ss_pred CceEEecchhhhhhh--cc-CCeEEEEEECCCChhhhcccHHHHHHHHHHhcc
Q psy1110 99 SEVVHLTDDNFDLVI--QE-ESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148 (366)
Q Consensus 99 ~~v~~l~~~~~~~~i--~~-~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~ 148 (366)
+.|..+++.++..-+ ++ +--|+|..|...-..|.-+.-.+..||-+|...
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~i 143 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQI 143 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcc
Confidence 468899998887644 23 556778899999999999999999999999664
No 288
>KOG1752|consensus
Probab=79.18 E-value=4.3 Score=33.31 Aligned_cols=30 Identities=23% Similarity=0.467 Sum_probs=21.2
Q ss_pred hhhhhccCCeEEEEEECCCChhhhcccHHHHH
Q psy1110 109 FDLVIQEESSVLVMFYAPWCGHCKKLKPEYEE 140 (366)
Q Consensus 109 ~~~~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~ 140 (366)
+.+++.+ .+ +|.|-.+||..|..+...|..
T Consensus 7 v~~~i~~-~~-VVifSKs~C~~c~~~k~ll~~ 36 (104)
T KOG1752|consen 7 VRKMISE-NP-VVIFSKSSCPYCHRAKELLSD 36 (104)
T ss_pred HHHHhhc-CC-EEEEECCcCchHHHHHHHHHh
Confidence 3445544 33 455899999999997777766
No 289
>PHA02125 thioredoxin-like protein
Probab=79.12 E-value=4.2 Score=30.65 Aligned_cols=44 Identities=7% Similarity=0.046 Sum_probs=31.6
Q ss_pred eEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecC-CccHHHHHH
Q psy1110 27 ITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYEN-GNTKDKIIE 75 (366)
Q Consensus 27 I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g-~r~~~~i~~ 75 (366)
+.+..||+.+ ..+++.+++|+ ||+. .|.....+.| +++..+|.+
T Consensus 25 ~~~~~vd~~~--~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l~~ 71 (75)
T PHA02125 25 YTYVDVDTDE--GVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAELKE 71 (75)
T ss_pred heEEeeeCCC--CHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHHHH
Confidence 5688899855 55999999999 9997 4555566777 445455544
No 290
>KOG1672|consensus
Probab=78.15 E-value=3 Score=38.04 Aligned_cols=39 Identities=21% Similarity=0.072 Sum_probs=32.9
Q ss_pred CeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecC
Q psy1110 26 AITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYEN 66 (366)
Q Consensus 26 ~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g 66 (366)
..+|.+||. +++.=||.+++|+ |++.+|++|.....+-|
T Consensus 115 eTrFikvna--e~~PFlv~kL~IkVLP~v~l~k~g~~~D~iVG 155 (211)
T KOG1672|consen 115 ETRFIKVNA--EKAPFLVTKLNIKVLPTVALFKNGKTVDYVVG 155 (211)
T ss_pred cceEEEEec--ccCceeeeeeeeeEeeeEEEEEcCEEEEEEee
Confidence 689999999 7777899999999 99999999976654443
No 291
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=77.64 E-value=3.5 Score=33.31 Aligned_cols=59 Identities=10% Similarity=0.139 Sum_probs=40.0
Q ss_pred chHHHhhcCCCCeEEEEeeecccCCcchhccCCccceEEeeecC-------eeeEeecCCccHHHHHHHHhCc
Q psy1110 15 SPLAKEIVKPKAITLGLIERLTEKADPVCTREKAKKKVRRQKNA-------EVKYVYENGNTKDKIIEFVRNP 80 (366)
Q Consensus 15 ~~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~Pti~~f~~g-------~~~~~y~g~r~~~~i~~fi~~~ 80 (366)
..+|..++ ....|+...- . .+..++++.|++.+|++. +....|.|+.+.++|.+|+...
T Consensus 38 ~~vA~~~R--~d~~F~~~~~--~---~~~~~~~~~~~ivl~~p~~~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 38 LKAADTLR--ESFRFAHTSD--K---QLLEKYGYGEGVVLFRPPRLSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred HHHHHhhh--hcCEEEEECh--H---HHHHhcCCCCceEEEechhhhcccCcccccccCcCCHHHHHHHHHhh
Confidence 34566665 4566665544 2 366777877889899541 2335699999999999999753
No 292
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=77.58 E-value=6.8 Score=36.00 Aligned_cols=52 Identities=13% Similarity=0.140 Sum_probs=39.7
Q ss_pred cCCeEEEEEECCCCh-hhhcccHHHHHHHHHHh-c---cccEEEeeccCCccccccc
Q psy1110 115 EESSVLVMFYAPWCG-HCKKLKPEYEEAAATMK-Q---QRAYYGMGMLRHRPQASNV 166 (366)
Q Consensus 115 ~~k~vlV~F~a~wC~-~Ck~~~p~~e~la~~~~-~---~v~~~~v~~~~~~~~~~~~ 166 (366)
.+++++|.|.=+.|+ -|--....+..+.++.. . .++++.|.+|-.++..+.+
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~l 122 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVL 122 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHH
Confidence 689999999989995 88888887877777766 2 3778888888666654443
No 293
>smart00594 UAS UAS domain.
Probab=77.32 E-value=5.4 Score=33.13 Aligned_cols=60 Identities=13% Similarity=0.065 Sum_probs=44.3
Q ss_pred hHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCe------eeEeecCCccHHHHHHHH
Q psy1110 16 PLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAE------VKYVYENGNTKDKIIEFV 77 (366)
Q Consensus 16 ~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~------~~~~y~g~r~~~~i~~fi 77 (366)
.+.+-+. ..+.+-++|-......+++.+++++ |++.++.+.. ......|..+.+.|+.++
T Consensus 54 ~V~~~i~--~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 54 AVKSLIR--ENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred HHHHHHH--cCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 3444444 3677767777666666899999998 9999997543 234678999999999876
No 294
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=77.03 E-value=0.92 Score=34.61 Aligned_cols=55 Identities=7% Similarity=-0.069 Sum_probs=35.0
Q ss_pred ceeeeccccccccccCCCCCCCCccceeEEEEec--cc------------------------------cccccccccccc
Q psy1110 242 WELRQVGTGKRIKSINSGSFSPRQITGILAAVDV--TR------------------------------EKSLGKRFDIKG 289 (366)
Q Consensus 242 ~~~~~c~~c~~~~p~~~~~~~~~~~~v~~a~vd~--~~------------------------------~~~l~~~~~I~~ 289 (366)
|.-..|+||..+.+.+.+.......++.+..... .. +..+...++++|
T Consensus 4 f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~g 83 (98)
T cd02972 4 FFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALGVTG 83 (98)
T ss_pred EECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCCCC
Confidence 5567899999999998554222233344444332 11 123466788999
Q ss_pred CCeEEEe
Q psy1110 290 FPTLKYF 296 (366)
Q Consensus 290 ~Ptl~~f 296 (366)
+||+++.
T Consensus 84 ~Pt~v~~ 90 (98)
T cd02972 84 TPTFVVN 90 (98)
T ss_pred CCEEEEC
Confidence 9999983
No 295
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=76.24 E-value=3 Score=33.42 Aligned_cols=38 Identities=5% Similarity=0.166 Sum_probs=28.1
Q ss_pred cchhccCCcc--ceEEeee-cCeeeEeecCCccHHHHHHHH
Q psy1110 40 DPVCTREKAK--KKVRRQK-NAEVKYVYENGNTKDKIIEFV 77 (366)
Q Consensus 40 ~~lc~~~~I~--Pti~~f~-~g~~~~~y~g~r~~~~i~~fi 77 (366)
.++..++||+ ||+.++. +|.....+.|-.+.++|.+++
T Consensus 72 ~~l~~~~~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 72 KELAQRYGVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp HHHHHHTT--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred HHHHHHcCCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 3689999999 9999997 567677889999999988764
No 296
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=76.10 E-value=6.3 Score=32.06 Aligned_cols=63 Identities=10% Similarity=0.047 Sum_probs=46.3
Q ss_pred hHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeec--CeeeEeecCCccHHHHHHHHhCc
Q psy1110 16 PLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKN--AEVKYVYENGNTKDKIIEFVRNP 80 (366)
Q Consensus 16 ~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~--g~~~~~y~g~r~~~~i~~fi~~~ 80 (366)
.+.+.+. ....+.++|-.......++..+++. |++.++.+ |.....+.|..+.+.+++.+++.
T Consensus 44 ~v~~~l~--~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~ 110 (114)
T cd02958 44 SVKEFIR--ENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEF 110 (114)
T ss_pred HHHHHHH--hCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHH
Confidence 4555555 3455556666543455899999999 99999986 56677888999999998887653
No 297
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=75.18 E-value=2 Score=36.66 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=29.6
Q ss_pred ccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHh
Q psy1110 278 EKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMR 319 (366)
Q Consensus 278 ~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~ 319 (366)
....+.+.+|++.|||++ +|+.+ .|..+.++|.++|+
T Consensus 125 ~~~~~~~~~i~~tPt~~i--nG~~~---~~~~~~~~l~~~Id 161 (162)
T PF13462_consen 125 DSQLARQLGITGTPTFFI--NGKYV---VGPYTIEELKELID 161 (162)
T ss_dssp HHHHHHHHT-SSSSEEEE--TTCEE---ETTTSHHHHHHHHH
T ss_pred HHHHHHHcCCccccEEEE--CCEEe---CCCCCHHHHHHHHc
Confidence 446678899999999999 99963 67788999888875
No 298
>KOG0911|consensus
Probab=74.87 E-value=1.3 Score=41.19 Aligned_cols=72 Identities=6% Similarity=-0.024 Sum_probs=56.8
Q ss_pred CcceeeeccccccccccCCCCCCCCccceeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHH
Q psy1110 240 RGWELRQVGTGKRIKSINSGSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDAS 312 (366)
Q Consensus 240 ~~~~~~~c~~c~~~~p~~~~~~~~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e 312 (366)
..+.+.||..|+++..+++..-+.. .++.+++.+..+...++..+.+...|+++++..|..+.+..|.....
T Consensus 22 ~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~~~~~~ 93 (227)
T KOG0911|consen 22 LHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSGADPPF 93 (227)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhccCcHH
Confidence 4566788999999888753211111 56889999999999999999999999999999998888877765543
No 299
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=74.55 E-value=8.2 Score=33.38 Aligned_cols=63 Identities=13% Similarity=0.099 Sum_probs=45.1
Q ss_pred hHHHhhcCCCCeEEEEeeeccc--------------------CCcchhccCCcc--ceEEeee-cCeeeEeecCCccHHH
Q psy1110 16 PLAKEIVKPKAITLGLIERLTE--------------------KADPVCTREKAK--KKVRRQK-NAEVKYVYENGNTKDK 72 (366)
Q Consensus 16 ~la~e~~~~~~I~~~~Vdc~~~--------------------~~~~lc~~~~I~--Pti~~f~-~g~~~~~y~g~r~~~~ 72 (366)
.+++++.+ .++.+..|+++.+ ....+++.++|. |++.++. +|.....+.|..+.+.
T Consensus 85 ~~~~~~~~-~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~ 163 (173)
T PRK03147 85 ELYPKYKE-KGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQ 163 (173)
T ss_pred HHHHHhhc-CCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHH
Confidence 44555542 3578888887532 134788999999 9887776 4555668899999999
Q ss_pred HHHHHhC
Q psy1110 73 IIEFVRN 79 (366)
Q Consensus 73 i~~fi~~ 79 (366)
+.+++.+
T Consensus 164 l~~~l~~ 170 (173)
T PRK03147 164 LEEYLEK 170 (173)
T ss_pred HHHHHHH
Confidence 9998864
No 300
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=74.42 E-value=6.2 Score=37.86 Aligned_cols=78 Identities=6% Similarity=-0.073 Sum_probs=52.9
Q ss_pred cCcccCCCCCCchHHHhhcCCCCeEEEEeeecccC---------CcchhccCCcc--ceEEeeec-Ceee-EeecCCccH
Q psy1110 4 SGWGTLNKEDTSPLAKEIVKPKAITLGLIERLTEK---------ADPVCTREKAK--KKVRRQKN-AEVK-YVYENGNTK 70 (366)
Q Consensus 4 ~~~~~~~~~~~~~la~e~~~~~~I~~~~Vdc~~~~---------~~~lc~~~~I~--Pti~~f~~-g~~~-~~y~g~r~~ 70 (366)
.+| |-.+....|.-+++++..++.+..|+.+... ...++.++||+ ||+.++.+ |+.. ....|..+.
T Consensus 175 Asw-Cp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~~v~~G~~s~ 253 (271)
T TIGR02740 175 KSD-CPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFTPIGFGVMSA 253 (271)
T ss_pred CCC-CccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEEEEEeCCCCH
Confidence 345 4555556666677776556667666654321 23688999999 99999987 4433 345588899
Q ss_pred HHHHHHHhCcCC
Q psy1110 71 DKIIEFVRNPQA 82 (366)
Q Consensus 71 ~~i~~fi~~~~~ 82 (366)
+.|.+.+.....
T Consensus 254 ~eL~~~i~~~a~ 265 (271)
T TIGR02740 254 DELVDRILLAAH 265 (271)
T ss_pred HHHHHHHHHHhc
Confidence 999998876544
No 301
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=73.81 E-value=3.3 Score=34.08 Aligned_cols=45 Identities=7% Similarity=-0.088 Sum_probs=30.8
Q ss_pred eEEEEeeecccCCcchhccCCcc--ce-EEeeecCeeeEeecCCccHHHH
Q psy1110 27 ITLGLIERLTEKADPVCTREKAK--KK-VRRQKNAEVKYVYENGNTKDKI 73 (366)
Q Consensus 27 I~~~~Vdc~~~~~~~lc~~~~I~--Pt-i~~f~~g~~~~~y~g~r~~~~i 73 (366)
+.+..+.++... .++..++|. |+ +.+.++|.....+.|..+.+.|
T Consensus 79 ~~~~~~~~D~~~--~~~~~~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 79 NPYAAVGFDPDG--RVGIDLGVYGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CCCceEEECCcc--hHHHhcCCCCCCeEEEECCCceEEEEEeccCChHhc
Confidence 334345554444 799999998 95 5555678777888898877653
No 302
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=73.56 E-value=22 Score=28.92 Aligned_cols=41 Identities=10% Similarity=0.214 Sum_probs=28.6
Q ss_pred cchhhhhhhccC-CeEEEEEECCCChhhhcccHHHHHHHHHHhcc
Q psy1110 105 TDDNFDLVIQEE-SSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148 (366)
Q Consensus 105 ~~~~~~~~i~~~-k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~ 148 (366)
+.++++.++... ..++|-|+..--+ .....+.++|+.+.+.
T Consensus 7 s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd 48 (107)
T cd03068 7 TLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLRED 48 (107)
T ss_pred CHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccC
Confidence 345677877665 7778888876433 3567788888888666
No 303
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=72.11 E-value=2.6 Score=38.51 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=35.7
Q ss_pred cccccccccccCCeEEEecCCceeeecCC--CCCHHHHHHHHhCCC
Q psy1110 279 KSLGKRFDIKGFPTLKYFRAGSVAFDAGH--LRDASRLVEFMRDPT 322 (366)
Q Consensus 279 ~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g--~~~~e~l~~fi~~~~ 322 (366)
..++++.++.|||||++-+||+...--.| ..+.+.++.++.+.+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 46788999999999999999997766666 567788888886543
No 304
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=71.67 E-value=6.6 Score=39.97 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=17.5
Q ss_pred EEEEECCCChhhhcccHHHHHH
Q psy1110 120 LVMFYAPWCGHCKKLKPEYEEA 141 (366)
Q Consensus 120 lV~F~a~wC~~Ck~~~p~~e~l 141 (366)
++.|..+||++|++....+.+.
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~ 25 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN 25 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC
Confidence 5678999999998887776653
No 305
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=68.91 E-value=0.49 Score=41.24 Aligned_cols=70 Identities=13% Similarity=0.109 Sum_probs=46.9
Q ss_pred CCCcCCcceeeeccccccccccCCCC---CCC-----CccceeEEEEeccc-------------------------cccc
Q psy1110 235 PESVGRGWELRQVGTGKRIKSINSGS---FSP-----RQITGILAAVDVTR-------------------------EKSL 281 (366)
Q Consensus 235 ~~~~~~~~~~~~c~~c~~~~p~~~~~---~~~-----~~~~v~~a~vd~~~-------------------------~~~l 281 (366)
.+.+...|.+.||+.|++..|.|.+- ++. ...++.+.-++.+. ...+
T Consensus 25 gk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~l 104 (146)
T cd03008 25 NRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRREL 104 (146)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHHH
Confidence 35566778888999999999998542 221 11235554444221 1256
Q ss_pred ccccccccCCeEEEe-cCCceeee
Q psy1110 282 GKRFDIKGFPTLKYF-RAGSVAFD 304 (366)
Q Consensus 282 ~~~~~I~~~Ptl~~f-k~G~~~~~ 304 (366)
...|++.++||++++ ++|+++.+
T Consensus 105 ~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 105 EAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHcCCCCCCEEEEECCCCcEEee
Confidence 778899999999988 58886644
No 306
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=68.59 E-value=4 Score=34.20 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=29.1
Q ss_pred cccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHH
Q psy1110 277 REKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFM 318 (366)
Q Consensus 277 ~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi 318 (366)
.+..++..++|+|+||+++ +|+ .+.|..+.+.|.+.|
T Consensus 117 ~~~~~~~~~gi~gtPt~~v--~g~---~~~G~~~~~~l~~~i 153 (154)
T cd03023 117 KNRQLARALGITGTPAFII--GDT---VIPGAVPADTLKEAI 153 (154)
T ss_pred HHHHHHHHcCCCcCCeEEE--CCE---EecCCCCHHHHHHHh
Confidence 3446678899999999988 675 567888888887765
No 307
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=68.21 E-value=6.3 Score=34.70 Aligned_cols=53 Identities=8% Similarity=-0.176 Sum_probs=37.5
Q ss_pred eEEEEeeecccCCcchhccCCcc--ceEEee-ecCeeeEeecCCccHHHHHHHHhCcC
Q psy1110 27 ITLGLIERLTEKADPVCTREKAK--KKVRRQ-KNAEVKYVYENGNTKDKIIEFVRNPQ 81 (366)
Q Consensus 27 I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f-~~g~~~~~y~g~r~~~~i~~fi~~~~ 81 (366)
+.+-.+.++... .+..+++|. |+..++ ++|.....+.|..+.+.+.+++....
T Consensus 116 ~~f~~v~~D~~~--~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 116 NPYQAILIDPNG--KLGLDLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred CCCceEEECCCC--chHHhcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 334345554444 788899998 965444 57777788889889999888886543
No 308
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=67.95 E-value=4 Score=30.92 Aligned_cols=64 Identities=16% Similarity=0.200 Sum_probs=43.8
Q ss_pred cCCCCCCchHHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecC-CccHHHHHHHHh
Q psy1110 8 TLNKEDTSPLAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYEN-GNTKDKIIEFVR 78 (366)
Q Consensus 8 ~~~~~~~~~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g-~r~~~~i~~fi~ 78 (366)
+-++..+.++++++....++++--+|- ....++ .++||. |++.+ +|. ..|.| -.+.+.|.+|++
T Consensus 10 C~~C~~~~~~~~~~~~~~~i~~ei~~~--~~~~~~-~~ygv~~vPalvI--ng~--~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 10 CPYCPELVQLLKEAAEELGIEVEIIDI--EDFEEI-EKYGVMSVPALVI--NGK--VVFVGRVPSKEELKELLE 76 (76)
T ss_dssp CTTHHHHHHHHHHHHHHTTEEEEEEET--TTHHHH-HHTT-SSSSEEEE--TTE--EEEESS--HHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcCCeEEEEEc--cCHHHH-HHcCCCCCCEEEE--CCE--EEEEecCCCHHHHHHHhC
Confidence 667777778888877656688766665 334455 999999 99943 564 56778 668888888874
No 309
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=67.52 E-value=0.85 Score=38.24 Aligned_cols=69 Identities=19% Similarity=0.221 Sum_probs=45.0
Q ss_pred CCcCCcceeeeccccccccccCCC---CCCCCccceeEEEEecccc-------------------------ccccccccc
Q psy1110 236 ESVGRGWELRQVGTGKRIKSINSG---SFSPRQITGILAAVDVTRE-------------------------KSLGKRFDI 287 (366)
Q Consensus 236 ~~~~~~~~~~~c~~c~~~~p~~~~---~~~~~~~~v~~a~vd~~~~-------------------------~~l~~~~~I 287 (366)
+.+...|.+.||++|+...|.+.+ .+++...++.+.-++.+.. ..+.+.|+|
T Consensus 18 k~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v 97 (132)
T cd02964 18 KTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKV 97 (132)
T ss_pred CEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcCC
Confidence 334556677889999999999754 3443322344444443321 245567999
Q ss_pred ccCCeEEEe-cCCceeee
Q psy1110 288 KGFPTLKYF-RAGSVAFD 304 (366)
Q Consensus 288 ~~~Ptl~~f-k~G~~~~~ 304 (366)
.++||++++ ++|+++.+
T Consensus 98 ~~iPt~~lid~~G~iv~~ 115 (132)
T cd02964 98 EGIPTLVVLKPDGDVVTT 115 (132)
T ss_pred CCCCEEEEECCCCCEEch
Confidence 999999988 47886543
No 310
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=67.42 E-value=0.93 Score=37.68 Aligned_cols=82 Identities=12% Similarity=0.105 Sum_probs=52.5
Q ss_pred cCCcceeeeccccccccccCCCC--CCCCccceeEEEEeccccccccccccccc--CCeEEEe-cCCceee---ecCCCC
Q psy1110 238 VGRGWELRQVGTGKRIKSINSGS--FSPRQITGILAAVDVTREKSLGKRFDIKG--FPTLKYF-RAGSVAF---DAGHLR 309 (366)
Q Consensus 238 ~~~~~~~~~c~~c~~~~p~~~~~--~~~~~~~v~~a~vd~~~~~~l~~~~~I~~--~Ptl~~f-k~G~~~~---~~~g~~ 309 (366)
+-..|++.||++|+.+.|.+.+. ....+.++....+|... ......|++.+ +||+++| ++|+.+. ...|.+
T Consensus 22 VlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~-~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~~~~~~ 100 (117)
T cd02959 22 LMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDE-EPKDEEFSPDGGYIPRILFLDPSGDVHPEIINKKGNP 100 (117)
T ss_pred EEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC-CchhhhcccCCCccceEEEECCCCCCchhhccCCCCc
Confidence 33557788999999999997542 11122334444444322 24456888887 9999999 5999765 445666
Q ss_pred CHHHHHHHHhC
Q psy1110 310 DASRLVEFMRD 320 (366)
Q Consensus 310 ~~e~l~~fi~~ 320 (366)
+.+.+.++|..
T Consensus 101 ~~~~f~~~~~~ 111 (117)
T cd02959 101 NYKYFYSSAAQ 111 (117)
T ss_pred cccccCCCHHH
Confidence 66655555443
No 311
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=66.07 E-value=12 Score=33.27 Aligned_cols=48 Identities=15% Similarity=0.226 Sum_probs=37.0
Q ss_pred cCCeEEEEEECCCC-hhhhcccHHHHHHHHHHhc---cccEEEeeccCCccc
Q psy1110 115 EESSVLVMFYAPWC-GHCKKLKPEYEEAAATMKQ---QRAYYGMGMLRHRPQ 162 (366)
Q Consensus 115 ~~k~vlV~F~a~wC-~~Ck~~~p~~e~la~~~~~---~v~~~~v~~~~~~~~ 162 (366)
.++.++|.|.-+.| ..|-.....+.++.+.+.. +++++.|.+|-.++.
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DT 102 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDT 102 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCC
Confidence 58999999999999 4898888888888877664 488888888854443
No 312
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=64.17 E-value=7 Score=36.52 Aligned_cols=43 Identities=16% Similarity=0.355 Sum_probs=33.7
Q ss_pred ccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhCCCCCCC
Q psy1110 280 SLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTEPPP 326 (366)
Q Consensus 280 ~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~~~~~~~ 326 (366)
..+..++|+++|+|++ +|+ +-..|..+.+.+.+-|++..+-.+
T Consensus 175 ~~A~e~gI~gVP~fv~--d~~--~~V~Gaq~~~v~~~al~~~~~~~~ 217 (225)
T COG2761 175 AAAQEMGIRGVPTFVF--DGK--YAVSGAQPYDVLEDALRQLLAEKA 217 (225)
T ss_pred HHHHHCCCccCceEEE--cCc--EeecCCCCHHHHHHHHHHHHhccc
Confidence 4577899999999999 665 456788898888888887766443
No 313
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=63.03 E-value=12 Score=30.30 Aligned_cols=35 Identities=6% Similarity=-0.031 Sum_probs=29.8
Q ss_pred chhccCCcc--ceEEeeecCeeeEeecCCccHHHHHH
Q psy1110 41 PVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIE 75 (366)
Q Consensus 41 ~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~ 75 (366)
.++++++|. |++.++.+++....+.|-.+.+.|.+
T Consensus 84 ~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~ 120 (123)
T cd03011 84 VISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRL 120 (123)
T ss_pred HHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHh
Confidence 799999999 99999987776677888888888765
No 314
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=62.98 E-value=0.33 Score=37.95 Aligned_cols=60 Identities=17% Similarity=0.156 Sum_probs=40.0
Q ss_pred CcceeeeccccccccccCCC---CCCCCccceeEEEEeccc-------------------------ccccccccccccCC
Q psy1110 240 RGWELRQVGTGKRIKSINSG---SFSPRQITGILAAVDVTR-------------------------EKSLGKRFDIKGFP 291 (366)
Q Consensus 240 ~~~~~~~c~~c~~~~p~~~~---~~~~~~~~v~~a~vd~~~-------------------------~~~l~~~~~I~~~P 291 (366)
..|.+.||++|+...|.+.+ .++. +.++.+.-+..++ ...+.+.|+|+++|
T Consensus 6 l~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~iP 84 (95)
T PF13905_consen 6 LYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGINGIP 84 (95)
T ss_dssp EEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-TSSS
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCCcCC
Confidence 45667789999999999744 4442 3556666555221 23567788999999
Q ss_pred eEEEe-cCCc
Q psy1110 292 TLKYF-RAGS 300 (366)
Q Consensus 292 tl~~f-k~G~ 300 (366)
+++++ ++|+
T Consensus 85 ~~~lld~~G~ 94 (95)
T PF13905_consen 85 TLVLLDPDGK 94 (95)
T ss_dssp EEEEEETTSB
T ss_pred EEEEECCCCC
Confidence 98888 5676
No 315
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=61.56 E-value=45 Score=34.72 Aligned_cols=29 Identities=21% Similarity=0.111 Sum_probs=22.1
Q ss_pred CCeEEEEEECCCChhhhcccHHHHHHHHH
Q psy1110 116 ESSVLVMFYAPWCGHCKKLKPEYEEAAAT 144 (366)
Q Consensus 116 ~k~vlV~F~a~wC~~Ck~~~p~~e~la~~ 144 (366)
.++|-+.++.+-|..|..+...+++++..
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (517)
T PRK15317 18 ERPIELVASLDDSEKSAELKELLEEIASL 46 (517)
T ss_pred CCCEEEEEEeCCCchHHHHHHHHHHHHHh
Confidence 45565656666899999999888888764
No 316
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=60.24 E-value=13 Score=31.26 Aligned_cols=37 Identities=14% Similarity=0.058 Sum_probs=28.3
Q ss_pred CCeEEEEeeeccc-----CCcchhccCCcc---ceEEeeecCeee
Q psy1110 25 KAITLGLIERLTE-----KADPVCTREKAK---KKVRRQKNAEVK 61 (366)
Q Consensus 25 ~~I~~~~Vdc~~~-----~~~~lc~~~~I~---Pti~~f~~g~~~ 61 (366)
.+++|.+||.... ...++..+++|. ||+.+|+.|+..
T Consensus 59 ~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l 103 (119)
T cd02952 59 EDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRL 103 (119)
T ss_pred CCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCcee
Confidence 4699999998652 235899999985 999999876533
No 317
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=59.81 E-value=42 Score=29.63 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=28.8
Q ss_pred cCCeEEEEEECCCChhhhcccHHH---HHHHHHHhcc-ccEEEeecc
Q psy1110 115 EESSVLVMFYAPWCGHCKKLKPEY---EEAAATMKQQ-RAYYGMGML 157 (366)
Q Consensus 115 ~~k~vlV~F~a~wC~~Ck~~~p~~---e~la~~~~~~-v~~~~v~~~ 157 (366)
.++++||-=-|+-|| +.|.+ +.|+++|+++ ..++.+-|+
T Consensus 24 ~GkVlLIVNtASkCG----fTpQYegLe~Ly~ky~~~Gf~VLgFPcN 66 (162)
T COG0386 24 KGKVLLIVNTASKCG----FTPQYEGLEALYKKYKDKGFEVLGFPCN 66 (162)
T ss_pred CCcEEEEEEcccccC----CcHhHHHHHHHHHHHhhCCcEEEecccc
Confidence 689999988999999 55654 5566777776 666666665
No 318
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=59.68 E-value=8.3 Score=32.96 Aligned_cols=44 Identities=18% Similarity=0.095 Sum_probs=31.6
Q ss_pred ccccccccccccCCeEEEecCCc-----------eeeecCCCCCHHHHHHHHhCC
Q psy1110 278 EKSLGKRFDIKGFPTLKYFRAGS-----------VAFDAGHLRDASRLVEFMRDP 321 (366)
Q Consensus 278 ~~~l~~~~~I~~~Ptl~~fk~G~-----------~~~~~~g~~~~e~l~~fi~~~ 321 (366)
+..++++|+|+.+|+|++.+++. ......|....+.-++.+.+.
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~ 114 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQD 114 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHh
Confidence 67889999999999999998774 123334666666666666543
No 319
>PHA03075 glutaredoxin-like protein; Provisional
Probab=56.83 E-value=7.3 Score=32.63 Aligned_cols=30 Identities=20% Similarity=0.536 Sum_probs=25.9
Q ss_pred CeEEEEEECCCChhhhcccHHHHHHHHHHh
Q psy1110 117 SSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146 (366)
Q Consensus 117 k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~ 146 (366)
|.++|.|..|-|+-|......++++..+|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 568999999999999999888877777664
No 320
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=56.64 E-value=8.7 Score=33.75 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=24.4
Q ss_pred EEEEECCCChhhhcccHHHHHHHHHH
Q psy1110 120 LVMFYAPWCGHCKKLKPEYEEAAATM 145 (366)
Q Consensus 120 lV~F~a~wC~~Ck~~~p~~e~la~~~ 145 (366)
+..|+..-|++|-...+.+.++.+.+
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~ 27 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEY 27 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 67888999999999999999999999
No 321
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=55.88 E-value=14 Score=32.90 Aligned_cols=36 Identities=17% Similarity=0.346 Sum_probs=26.6
Q ss_pred EEECCCChhhhcccHHHHHHHHHHhccccEEEeecc
Q psy1110 122 MFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGML 157 (366)
Q Consensus 122 ~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~ 157 (366)
+|.-|.|++|-.+.|.|.++...|...+.+-.+-..
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i~~~ 37 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFIPGG 37 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE--
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEEEcc
Confidence 588899999999999999999999988655554443
No 322
>KOG1651|consensus
Probab=53.94 E-value=51 Score=29.45 Aligned_cols=44 Identities=20% Similarity=0.204 Sum_probs=37.0
Q ss_pred cCCeEEEEEECCCChhhhcccHHHHHHHHHHhcc-ccEEEeeccC
Q psy1110 115 EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ-RAYYGMGMLR 158 (366)
Q Consensus 115 ~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~-v~~~~v~~~~ 158 (366)
.++++||-=-|+.||.-..-...+..|.++|+.+ ..++.+-|+.
T Consensus 33 rGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQ 77 (171)
T KOG1651|consen 33 RGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQ 77 (171)
T ss_pred CCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEecccc
Confidence 4788888889999998887788999999999887 7777777763
No 323
>KOG0914|consensus
Probab=53.10 E-value=8.8 Score=35.79 Aligned_cols=47 Identities=11% Similarity=0.118 Sum_probs=37.0
Q ss_pred CCchHHHhhcC---CCCeEEEEeeecccCCcchhccCCcc--------ceEEeeecCeee
Q psy1110 13 DTSPLAKEIVK---PKAITLGLIERLTEKADPVCTREKAK--------KKVRRQKNAEVK 61 (366)
Q Consensus 13 ~~~~la~e~~~---~~~I~~~~Vdc~~~~~~~lc~~~~I~--------Pti~~f~~g~~~ 61 (366)
-.||+-.||.- ....+||+||- ..+.+.+.+++|. ||+.+|.+|...
T Consensus 161 ~~spvfaeLS~kyn~~~lkFGkvDi--Grfpd~a~kfris~s~~srQLPT~ilFq~gkE~ 218 (265)
T KOG0914|consen 161 RFSPVFAELSIKYNNNLLKFGKVDI--GRFPDVAAKFRISLSPGSRQLPTYILFQKGKEV 218 (265)
T ss_pred ccccccHHHHHHhCCCCCcccceee--ccCcChHHheeeccCcccccCCeEEEEccchhh
Confidence 35566556552 35799999999 6688999999998 999999988654
No 324
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=52.91 E-value=56 Score=26.92 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=40.8
Q ss_pred CCceEEecchhhhhhhccCCeEEEEEECCCChhhhcccHHHHHHHHHHhcc-ccEEEeeccC
Q psy1110 98 ESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ-RAYYGMGMLR 158 (366)
Q Consensus 98 ~~~v~~l~~~~~~~~i~~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~-v~~~~v~~~~ 158 (366)
.+..+.|+.. .++++||-=-|+.||.-. ....+++|.++|.++ ..++.+-|++
T Consensus 10 ~G~~v~l~~y-------~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 10 DGKPVSLSKY-------KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp TSSEEEGGGG-------TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred CCCEECHHHc-------CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 3445555544 689999988999999777 777889999999865 7777777764
No 325
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=52.82 E-value=82 Score=32.80 Aligned_cols=65 Identities=8% Similarity=0.064 Sum_probs=36.9
Q ss_pred cCCeEEEecCCc-eeeecCCCCCHHHHHHHHhCCCCCCCCCCCCCCCCCCCCeeEEechhcHHHHhhccCc-eEEEEecC
Q psy1110 289 GFPTLKYFRAGS-VAFDAGHLRDASRLVEFMRDPTEPPPPPPPEPAWAEEPSEVYHLGADNFASTLRKKKH-ALVMFYAP 366 (366)
Q Consensus 289 ~~Ptl~~fk~G~-~~~~~~g~~~~e~l~~fi~~~~~~~~~~~~~~~~~~~~~~v~~lt~~~~~~~~~~~~~-~~v~fy~~ 366 (366)
..|++.+.++|+ .-.+|.|-..-.++-+||.....-.-+ =..|+.+..+.+-.-+++ .+.+|++|
T Consensus 61 ~~p~~~~~~~~~~~~i~f~g~P~g~Ef~s~i~~i~~~~~~-------------~~~l~~~~~~~~~~~~~~~~i~~f~~~ 127 (515)
T TIGR03140 61 RKPSFTILRDGADTGIRFAGIPGGHEFTSLVLAILQVGGH-------------GPKLDEGIIDRIRRLNGPLHFETYVSL 127 (515)
T ss_pred CCCeEEEecCCcccceEEEecCCcHHHHHHHHHHHHhcCC-------------CCCCCHHHHHHHHhcCCCeEEEEEEeC
Confidence 459998888875 336787776666666666543321111 123455554444443444 46777764
No 326
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=51.99 E-value=12 Score=33.22 Aligned_cols=37 Identities=11% Similarity=0.412 Sum_probs=28.2
Q ss_pred ccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHH
Q psy1110 278 EKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFM 318 (366)
Q Consensus 278 ~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi 318 (366)
+...+...+|+|+||+++ +|+ +...|..+.+.+.+-|
T Consensus 164 ~~~~a~~~gv~G~Pt~vv--~g~--~~~~G~~~~~~~~~~i 200 (201)
T cd03024 164 DEARARQLGISGVPFFVF--NGK--YAVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHHCCCCcCCEEEE--CCe--EeecCCCCHHHHHHHh
Confidence 345567889999999999 776 3467888888877655
No 327
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=51.38 E-value=17 Score=29.98 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=32.2
Q ss_pred CCeEEEEeeecccCCcchhccCCcc--ceEEeeecCeeeEeecCCcc
Q psy1110 25 KAITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVKYVYENGNT 69 (366)
Q Consensus 25 ~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~ 69 (366)
+.+..+-|+-..+. .|..++|+. |++.+|+.|.+.-..+|=++
T Consensus 59 ~~~~~avv~~~~e~--~L~~r~gv~~~PaLvf~R~g~~lG~i~gi~d 103 (107)
T PF07449_consen 59 GRFRGAVVARAAER--ALAARFGVRRWPALVFFRDGRYLGAIEGIRD 103 (107)
T ss_dssp TSEEEEEEEHHHHH--HHHHHHT-TSSSEEEEEETTEEEEEEESSST
T ss_pred CccceEEECchhHH--HHHHHhCCccCCeEEEEECCEEEEEecCeec
Confidence 56777777754444 899999998 99999999987766666443
No 328
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=50.92 E-value=13 Score=33.93 Aligned_cols=28 Identities=11% Similarity=0.329 Sum_probs=21.9
Q ss_pred ccccccccccccCCeEEEecCCceeeecCC
Q psy1110 278 EKSLGKRFDIKGFPTLKYFRAGSVAFDAGH 307 (366)
Q Consensus 278 ~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g 307 (366)
......+++|+|.||+++ +|+.+..-.+
T Consensus 156 ~~~~a~~~gI~gtPtfiI--nGky~v~~~~ 183 (207)
T PRK10954 156 QEKAAADLQLRGVPAMFV--NGKYMVNNQG 183 (207)
T ss_pred HHHHHHHcCCCCCCEEEE--CCEEEEcccc
Confidence 456678899999999999 9997655444
No 329
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=49.94 E-value=6.7 Score=34.96 Aligned_cols=21 Identities=38% Similarity=0.806 Sum_probs=16.6
Q ss_pred cccccccccccccCCeEEEec
Q psy1110 277 REKSLGKRFDIKGFPTLKYFR 297 (366)
Q Consensus 277 ~~~~l~~~~~I~~~Ptl~~fk 297 (366)
.+..++..++|+++||+++|.
T Consensus 135 ~D~~la~~m~I~~~Ptlvi~~ 155 (176)
T PF13743_consen 135 EDQQLAREMGITGFPTLVIFN 155 (176)
T ss_dssp HHHHHHHHTT-SSSSEEEEE-
T ss_pred HHHHHHHHcCCCCCCEEEEEe
Confidence 445788999999999999997
No 330
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=48.89 E-value=31 Score=28.01 Aligned_cols=58 Identities=9% Similarity=0.114 Sum_probs=38.9
Q ss_pred chHHHhhcCCCCeEEEEeeecccCCcchhccCCcc-ceEEeeecCee-------eEeecCC-ccHHH-HHHHHhC
Q psy1110 15 SPLAKEIVKPKAITLGLIERLTEKADPVCTREKAK-KKVRRQKNAEV-------KYVYENG-NTKDK-IIEFVRN 79 (366)
Q Consensus 15 ~~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~-Pti~~f~~g~~-------~~~y~g~-r~~~~-i~~fi~~ 79 (366)
..+|..++ ....|+...- . .+..++++. |++.+|++... ...|.|. .+.++ |..|++.
T Consensus 39 ~~vA~~~R--dd~~F~~t~~--~---~~~~~~~~~~~~vvl~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 39 QDAANSLR--EDYKFHHTFD--S---EIFKSLKVSPGQLVVFQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred HHHHHhcc--cCCEEEEECh--H---HHHHhcCCCCCceEEECcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 35666666 5567765554 2 467778888 88999965432 3567776 56655 9999875
No 331
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=48.04 E-value=43 Score=25.66 Aligned_cols=42 Identities=0% Similarity=-0.076 Sum_probs=30.3
Q ss_pred CCeEEEEeeeccc---------------------CCcchhccCCcc--ceEEeeec-CeeeEeecC
Q psy1110 25 KAITLGLIERLTE---------------------KADPVCTREKAK--KKVRRQKN-AEVKYVYEN 66 (366)
Q Consensus 25 ~~I~~~~Vdc~~~---------------------~~~~lc~~~~I~--Pti~~f~~-g~~~~~y~g 66 (366)
.++.+..|+++.+ ....++..+++. |++.++.+ |.....|.|
T Consensus 51 ~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 51 DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCccceEEEECCCCcEEEEecC
Confidence 4689999999663 014789999997 99988874 555566554
No 332
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=47.47 E-value=22 Score=31.60 Aligned_cols=40 Identities=0% Similarity=0.005 Sum_probs=30.7
Q ss_pred CCcchhccCCcc--ceEEeeec-CeeeEeecCCccHHHHHHHH
Q psy1110 38 KADPVCTREKAK--KKVRRQKN-AEVKYVYENGNTKDKIIEFV 77 (366)
Q Consensus 38 ~~~~lc~~~~I~--Pti~~f~~-g~~~~~y~g~r~~~~i~~fi 77 (366)
.+++|+..++|+ ||+.+|.. |+.....+|-...++++.-+
T Consensus 103 s~~ELa~kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vl 145 (182)
T COG2143 103 STEELAQKFAVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVL 145 (182)
T ss_pred cHHHHHHHhccccCceEEEEcCCCCEEEecCCCCCHHHHHHHH
Confidence 355999999999 99999985 46667788977777655433
No 333
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=47.08 E-value=4.6 Score=36.49 Aligned_cols=81 Identities=10% Similarity=-0.066 Sum_probs=53.5
Q ss_pred ceeeeccccccccccCCCCCCCCccceeEEEEecc-----------ccccccccccc--ccCCeEEEe-cCCcee-eecC
Q psy1110 242 WELRQVGTGKRIKSINSGSFSPRQITGILAAVDVT-----------REKSLGKRFDI--KGFPTLKYF-RAGSVA-FDAG 306 (366)
Q Consensus 242 ~~~~~c~~c~~~~p~~~~~~~~~~~~v~~a~vd~~-----------~~~~l~~~~~I--~~~Ptl~~f-k~G~~~-~~~~ 306 (366)
|.+-||++|++..|.+.+-.+..+..+..+.+|.. ....+...|++ .++||.+++ ++|+++ ..+.
T Consensus 76 FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~~~~~ 155 (181)
T PRK13728 76 FMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEALPLLQ 155 (181)
T ss_pred EECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEEEEEE
Confidence 44457999999999974322222223333344422 11235567774 699998888 899876 4789
Q ss_pred CCCCHHHHHHHHhCCC
Q psy1110 307 HLRDASRLVEFMRDPT 322 (366)
Q Consensus 307 g~~~~e~l~~fi~~~~ 322 (366)
|..+.+.|.+.|.+..
T Consensus 156 G~~~~~~L~~~I~~ll 171 (181)
T PRK13728 156 GATDAAGFMARMDTVL 171 (181)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999988887776654
No 334
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=44.46 E-value=33 Score=30.53 Aligned_cols=41 Identities=5% Similarity=-0.145 Sum_probs=31.6
Q ss_pred chhccCCcc--ceEEeee-cCeeeEeecCCccHHHHHHHHhCcC
Q psy1110 41 PVCTREKAK--KKVRRQK-NAEVKYVYENGNTKDKIIEFVRNPQ 81 (366)
Q Consensus 41 ~lc~~~~I~--Pti~~f~-~g~~~~~y~g~r~~~~i~~fi~~~~ 81 (366)
.++..+||. |+..++. +|.....+.|..+.+.+.+.+....
T Consensus 133 ~~~~~~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 133 MLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred cHHHhcCCCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 678889999 9655554 6777788889998888888776544
No 335
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=42.73 E-value=46 Score=33.03 Aligned_cols=104 Identities=14% Similarity=0.058 Sum_probs=70.4
Q ss_pred CCCCCChhhhHhhhhcccCCCCCcCCcceeeeccccccccccC-------CCCCCCCccceeEEEEeccccc---ccccc
Q psy1110 215 PEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSIN-------SGSFSPRQITGILAAVDVTREK---SLGKR 284 (366)
Q Consensus 215 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~p~~-------~~~~~~~~~~v~~a~vd~~~~~---~l~~~ 284 (366)
+++.++|..-.++|-+-... .++.++..|+.|.+..--+ .|.+...+..+.++.|-|.-|. .--..
T Consensus 236 ~~P~~EV~V~~eILqslglR----~~~v~~iaCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~Ad 311 (361)
T COG0821 236 ADPVEEVKVAQEILQSLGLR----SRGVEVIACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHAD 311 (361)
T ss_pred CCchhhhHHHHHHHHHhCcc----ccCceEEECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccc
Confidence 34455554444444443222 2567788899999887663 5566666677888888886553 34456
Q ss_pred cccccC--CeEEEecCCceeeecCCCCCHHHHHHHHhCCC
Q psy1110 285 FDIKGF--PTLKYFRAGSVAFDAGHLRDASRLVEFMRDPT 322 (366)
Q Consensus 285 ~~I~~~--Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~~~ 322 (366)
++|.+- |...+|.+|+.+.+..+..=.++|...++++.
T Consensus 312 iGia~~~~~~~~~f~~g~~~~~~~~~~~~eel~~~i~~~~ 351 (361)
T COG0821 312 IGIAGGGKGSGPVFVKGEIIKKLPEEDIVEELEALIEAYA 351 (361)
T ss_pred eeeecCCCCeeEEEECCeEEEecChhhHHHHHHHHHHHHH
Confidence 777754 88999999999988887766777777666543
No 336
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=40.56 E-value=30 Score=36.44 Aligned_cols=49 Identities=10% Similarity=0.169 Sum_probs=37.8
Q ss_pred EeeecccCCcchhccCCcc--ceEEee-ecCeeeEeecCCccHHHHHHHHhCcC
Q psy1110 31 LIERLTEKADPVCTREKAK--KKVRRQ-KNAEVKYVYENGNTKDKIIEFVRNPQ 81 (366)
Q Consensus 31 ~Vdc~~~~~~~lc~~~~I~--Pti~~f-~~g~~~~~y~g~r~~~~i~~fi~~~~ 81 (366)
.|+++.+. .+...++|. ||+.++ ++|.....+.|..+.+.|..++++..
T Consensus 122 pV~~D~~~--~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~~ 173 (521)
T PRK14018 122 PVLTDNGG--TLAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNPN 173 (521)
T ss_pred ceeccccH--HHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHhh
Confidence 34554433 799999999 998555 56777788899999999999998544
No 337
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=40.11 E-value=19 Score=28.93 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=21.9
Q ss_pred EEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccC
Q psy1110 121 VMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLR 158 (366)
Q Consensus 121 V~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~ 158 (366)
..|+.++|+.|++....+++. .+.|-.+|+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~ 33 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDYLK 33 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCCcEEEeecc
Confidence 468899999999987776653 34444555443
No 338
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=39.98 E-value=21 Score=31.34 Aligned_cols=36 Identities=17% Similarity=0.061 Sum_probs=26.1
Q ss_pred ccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHH
Q psy1110 278 EKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFM 318 (366)
Q Consensus 278 ~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi 318 (366)
+...+.+.+|+|+||+++ +|+ .+.|....+.|.+.+
T Consensus 156 ~~~~a~~~gi~gvPtfvv--~g~---~~~G~~~l~~~~~~l 191 (192)
T cd03022 156 NTEEAIARGVFGVPTFVV--DGE---MFWGQDRLDMLEEAL 191 (192)
T ss_pred HHHHHHHcCCCcCCeEEE--CCe---eecccccHHHHHHHh
Confidence 345567889999999999 776 345776777665554
No 339
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=39.81 E-value=21 Score=30.80 Aligned_cols=29 Identities=21% Similarity=0.527 Sum_probs=21.7
Q ss_pred cccccccccccccCCeEEEecCCceeeecCC
Q psy1110 277 REKSLGKRFDIKGFPTLKYFRAGSVAFDAGH 307 (366)
Q Consensus 277 ~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g 307 (366)
.+...+.+++|++.||+++ +|+.+..-.+
T Consensus 131 ~~~~~~~~~gi~gTPt~iI--nG~~~~~~~~ 159 (178)
T cd03019 131 KAEKLAKKYKITGVPAFVV--NGKYVVNPSA 159 (178)
T ss_pred HHHHHHHHcCCCCCCeEEE--CCEEEEChhh
Confidence 4456678899999999999 8886544433
No 340
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=38.69 E-value=20 Score=29.14 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=22.1
Q ss_pred EEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCc
Q psy1110 121 VMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHR 160 (366)
Q Consensus 121 V~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~ 160 (366)
..|+.++|+.|++....+++- .+.+-.+|..+++
T Consensus 2 ~iy~~~~C~~crka~~~L~~~------~i~~~~~di~~~p 35 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR------GVAYTFHDYRKDG 35 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc------CCCeEEEecccCC
Confidence 468899999999876665543 3444455544433
No 341
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=38.67 E-value=35 Score=36.15 Aligned_cols=57 Identities=9% Similarity=-0.025 Sum_probs=46.9
Q ss_pred CCCeEEEEeeecccC--CcchhccCCcc--ceEEeee-cCeeeEeecCCccHHHHHHHHhCc
Q psy1110 24 PKAITLGLIERLTEK--ADPVCTREKAK--KKVRRQK-NAEVKYVYENGNTKDKIIEFVRNP 80 (366)
Q Consensus 24 ~~~I~~~~Vdc~~~~--~~~lc~~~~I~--Pti~~f~-~g~~~~~y~g~r~~~~i~~fi~~~ 80 (366)
-.++..-|+|-+.+. .+++-+++|+- |++.+|. +|+.....+|-.|.+.+++++++.
T Consensus 506 ~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 506 LQDVVLLQADVTANDPAITALLKRLGVFGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred cCCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 467888999987653 56788999999 9999999 566666788999999999999764
No 342
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=37.68 E-value=31 Score=28.53 Aligned_cols=22 Identities=14% Similarity=0.371 Sum_probs=19.6
Q ss_pred cccccccccccccCCeEEEecC
Q psy1110 277 REKSLGKRFDIKGFPTLKYFRA 298 (366)
Q Consensus 277 ~~~~l~~~~~I~~~Ptl~~fk~ 298 (366)
-+..++++|+|+.+||+++-++
T Consensus 59 IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 59 IDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred EChhHHhhCCceEcCEEEEEcC
Confidence 3678899999999999999877
No 343
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=34.99 E-value=2.3e+02 Score=23.64 Aligned_cols=40 Identities=10% Similarity=-0.026 Sum_probs=30.3
Q ss_pred CCeEEEEEECCCChhhhcccHHHHHHHHHHhcc--ccEEEee
Q psy1110 116 ESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ--RAYYGMG 155 (366)
Q Consensus 116 ~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~--v~~~~v~ 155 (366)
++..++-|--+--..-.+|.+.++++|+.+.++ ..++-|+
T Consensus 20 ~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWID 61 (120)
T cd03074 20 DGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWID 61 (120)
T ss_pred CCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEEC
Confidence 466778887777777789999999999988765 5555554
No 344
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=34.47 E-value=31 Score=25.13 Aligned_cols=67 Identities=15% Similarity=0.167 Sum_probs=34.9
Q ss_pred ceeeeccccccccccCCCCCCCCccceeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHh
Q psy1110 242 WELRQVGTGKRIKSINSGSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMR 319 (366)
Q Consensus 242 ~~~~~c~~c~~~~p~~~~~~~~~~~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~ 319 (366)
|+..+|.+|.++.-.|+.. +.......++........+...-..+|+|+. .+|.. ..+...|++|+.
T Consensus 4 y~~~~~p~~~rvr~~L~~~----gl~~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~~------l~es~aI~~yL~ 70 (71)
T cd03037 4 YIYEHCPFCVKARMIAGLK----NIPVEQIILQNDDEATPIRMIGAKQVPILEK-DDGSF------MAESLDIVAFID 70 (71)
T ss_pred EecCCCcHhHHHHHHHHHc----CCCeEEEECCCCchHHHHHhcCCCccCEEEe-CCCeE------eehHHHHHHHHh
Confidence 4566799999988877432 1112233333222212222233356788754 33542 234567778775
No 345
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=34.31 E-value=8 Score=33.83 Aligned_cols=81 Identities=7% Similarity=-0.137 Sum_probs=51.3
Q ss_pred cceeeeccccccccccCCCCCCCCccceeEEEEeccc----------ccccc-ccc---ccccCCeEEEe-cCCce-eee
Q psy1110 241 GWELRQVGTGKRIKSINSGSFSPRQITGILAAVDVTR----------EKSLG-KRF---DIKGFPTLKYF-RAGSV-AFD 304 (366)
Q Consensus 241 ~~~~~~c~~c~~~~p~~~~~~~~~~~~v~~a~vd~~~----------~~~l~-~~~---~I~~~Ptl~~f-k~G~~-~~~ 304 (366)
.|.+.||++|++..|.+.+-.+..+..+....+|... ..... ..| ++.++||++++ ++|+. ...
T Consensus 56 nFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G~~i~~~ 135 (153)
T TIGR02738 56 FFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNTRKAYPV 135 (153)
T ss_pred EEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCCCCEEEEE
Confidence 3445679999999999743222222234444444321 11222 334 78999999988 56665 457
Q ss_pred cCCCCCHHHHHHHHhCC
Q psy1110 305 AGHLRDASRLVEFMRDP 321 (366)
Q Consensus 305 ~~g~~~~e~l~~fi~~~ 321 (366)
+.|..+.+.+.+.+.+.
T Consensus 136 ~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 136 LQGAVDEAELANRMDEI 152 (153)
T ss_pred eecccCHHHHHHHHHHh
Confidence 88999999888877653
No 346
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=33.74 E-value=1.1e+02 Score=25.38 Aligned_cols=62 Identities=6% Similarity=-0.067 Sum_probs=44.0
Q ss_pred HHHhhcCCCCeEEEEeeecccCCcchhccCCcc--ceEEeee--cC--eeeEeecCCccHHHHHHHHhCc
Q psy1110 17 LAKEIVKPKAITLGLIERLTEKADPVCTREKAK--KKVRRQK--NA--EVKYVYENGNTKDKIIEFVRNP 80 (366)
Q Consensus 17 la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~--~g--~~~~~y~g~r~~~~i~~fi~~~ 80 (366)
+.+-+. ..+-+-..|.....-..++..++++ |++.++. ++ .......|.++.++|+..++..
T Consensus 45 v~~~ln--~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~ 112 (116)
T cd02991 45 VIEYIN--TRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFI 112 (116)
T ss_pred HHHHHH--cCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHH
Confidence 444444 4566667777544445799999999 9998884 22 2346788999999999888653
No 347
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=33.52 E-value=41 Score=31.39 Aligned_cols=39 Identities=5% Similarity=0.045 Sum_probs=31.5
Q ss_pred cCCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHHhC
Q psy1110 37 EKADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFVRN 79 (366)
Q Consensus 37 ~~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi~~ 79 (366)
+.+..++.++||+ ||+. |.+|. .+.|-++.+.|.+++..
T Consensus 189 ~~~~~la~~lgi~gTPtiv-~~~G~---~~~G~~~~~~L~~~l~~ 229 (232)
T PRK10877 189 ADHYALGVQFGVQGTPAIV-LSNGT---LVPGYQGPKEMKAFLDE 229 (232)
T ss_pred HHhHHHHHHcCCccccEEE-EcCCe---EeeCCCCHHHHHHHHHH
Confidence 4566999999999 9997 66664 34788899999999865
No 348
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=33.14 E-value=47 Score=31.30 Aligned_cols=42 Identities=10% Similarity=0.192 Sum_probs=35.9
Q ss_pred cCCeEEEEEECCCChhhhcccHHHHHHHHHHhcc----ccEEEeec
Q psy1110 115 EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ----RAYYGMGM 156 (366)
Q Consensus 115 ~~k~vlV~F~a~wC~~Ck~~~p~~e~la~~~~~~----v~~~~v~~ 156 (366)
.+.+++|-+-..+|..|..-...++.|..++..+ |.|+.||-
T Consensus 25 ~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~ 70 (238)
T PF04592_consen 25 LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNH 70 (238)
T ss_pred CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcC
Confidence 3688899999999999999999999999888765 78888884
No 349
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=33.04 E-value=38 Score=27.85 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=25.1
Q ss_pred EEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCcc
Q psy1110 121 VMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRP 161 (366)
Q Consensus 121 V~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~~ 161 (366)
..|+.++|+.|++....+++ ..+.+-.+|+.+++.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~------~~i~~~~idi~~~~~ 36 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA------NGIEYQFIDIGEDGP 36 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH------cCCceEEEecCCChh
Confidence 35789999999998877766 245666777665444
No 350
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=30.84 E-value=48 Score=25.31 Aligned_cols=66 Identities=3% Similarity=0.047 Sum_probs=44.0
Q ss_pred CCCCchHHHhhcCCCCeEEEEeeecccCCcchhccCCcc-ceEEeeecCee--eEeecCCccHHHHHHHHh
Q psy1110 11 KEDTSPLAKEIVKPKAITLGLIERLTEKADPVCTREKAK-KKVRRQKNAEV--KYVYENGNTKDKIIEFVR 78 (366)
Q Consensus 11 ~~~~~~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~~~I~-Pti~~f~~g~~--~~~y~g~r~~~~i~~fi~ 78 (366)
+++|..+-..+.....+.+-.||-..+. .+-.+|+.. |.+.+=..++. .....+..+.+.|.+|++
T Consensus 13 C~~a~~~L~~~~~~~~~~l~~vDI~~d~--~l~~~Y~~~IPVl~~~~~~~~~~~~~~~~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 13 CDEAKEILEEVAAEFPFELEEVDIDEDP--ELFEKYGYRIPVLHIDGIRQFKEQEELKWRFDEEQLRAWLE 81 (81)
T ss_dssp HHHHHHHHHHCCTTSTCEEEEEETTTTH--HHHHHSCTSTSEEEETT-GGGCTSEEEESSB-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCceEEEEECCCCH--HHHHHhcCCCCEEEEcCcccccccceeCCCCCHHHHHHHhC
Confidence 3455555566655677899999996544 899999999 99865442111 233446778899988874
No 351
>KOG2792|consensus
Probab=30.75 E-value=49 Score=31.71 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=19.9
Q ss_pred cCCceeeecCCCCCHHHHHHHHhCCC
Q psy1110 297 RAGSVAFDAGHLRDASRLVEFMRDPT 322 (366)
Q Consensus 297 k~G~~~~~~~g~~~~e~l~~fi~~~~ 322 (366)
.+|+.+..|.-.++.+++.+-|..+.
T Consensus 250 Peg~Fvd~~GrN~~~~~~~~~I~~~v 275 (280)
T KOG2792|consen 250 PEGEFVDYYGRNYDADELADSILKHV 275 (280)
T ss_pred CCcceehhhcccCCHHHHHHHHHHHH
Confidence 78998877777788888887766544
No 352
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=30.38 E-value=33 Score=27.99 Aligned_cols=33 Identities=21% Similarity=0.472 Sum_probs=22.6
Q ss_pred EEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCC
Q psy1110 121 VMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRH 159 (366)
Q Consensus 121 V~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~ 159 (366)
..|..++|+.|++....+++- .+.|-.+|+.++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~~~ 34 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH------GVDYTAIDIVEE 34 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCceEEecccCC
Confidence 457899999999987776653 345555555443
No 353
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=29.55 E-value=41 Score=28.42 Aligned_cols=35 Identities=23% Similarity=0.479 Sum_probs=22.8
Q ss_pred EEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCc
Q psy1110 120 LVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHR 160 (366)
Q Consensus 120 lV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~ 160 (366)
+..|+.++|+.|++....+++. .+.|-.+|+.+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~------gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH------DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCcEEeeccCCh
Confidence 4567899999999876555443 3455555654433
No 354
>KOG2603|consensus
Probab=29.00 E-value=54 Score=32.22 Aligned_cols=56 Identities=11% Similarity=0.105 Sum_probs=42.5
Q ss_pred CeEEEEeeecccCCcchhccCCcc--ceEEeeecCeee----Eeec---CCccHHHHHHHHhCcCCc
Q psy1110 26 AITLGLIERLTEKADPVCTREKAK--KKVRRQKNAEVK----YVYE---NGNTKDKIIEFVRNPQAT 83 (366)
Q Consensus 26 ~I~~~~Vdc~~~~~~~lc~~~~I~--Pti~~f~~g~~~----~~y~---g~r~~~~i~~fi~~~~~~ 83 (366)
+|=|+.||-++.. ++-++++++ |++..|++.... ..+. -++..|++++|+.+..+-
T Consensus 104 klFF~~Vd~~e~p--~~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv 168 (331)
T KOG2603|consen 104 KLFFCMVDYDESP--QVFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKV 168 (331)
T ss_pred eEEEEEEeccccH--HHHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhh
Confidence 6789999996655 899999999 999999765322 1222 255699999999887665
No 355
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=26.82 E-value=47 Score=24.22 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=15.8
Q ss_pred EEEECCCChhhhcccHHHHHH
Q psy1110 121 VMFYAPWCGHCKKLKPEYEEA 141 (366)
Q Consensus 121 V~F~a~wC~~Ck~~~p~~e~l 141 (366)
+.|+.+||++|.+.+-.+++.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~ 22 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA 22 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc
Confidence 457789999998886665554
No 356
>KOG2507|consensus
Probab=26.62 E-value=2.4e+02 Score=29.11 Aligned_cols=52 Identities=8% Similarity=0.102 Sum_probs=38.9
Q ss_pred eeEEEEecc--cccccccccccccCCeEEEe-cCCceeeecCCCCCHHHHHHHHh
Q psy1110 268 GILAAVDVT--REKSLGKRFDIKGFPTLKYF-RAGSVAFDAGHLRDASRLVEFMR 319 (366)
Q Consensus 268 v~~a~vd~~--~~~~l~~~~~I~~~Ptl~~f-k~G~~~~~~~g~~~~e~l~~fi~ 319 (366)
++.++++.. .-.++...|.+-.+|.++++ ..|..+....|.-..++|.+-|+
T Consensus 54 fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevitg~v~adeL~~~i~ 108 (506)
T KOG2507|consen 54 FVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVITGFVTADELASSIE 108 (506)
T ss_pred eEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEeeccccHHHHHHHHH
Confidence 445555542 23366778899999998888 78999999999988888776553
No 357
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=26.08 E-value=82 Score=27.53 Aligned_cols=29 Identities=28% Similarity=0.564 Sum_probs=25.2
Q ss_pred EEEEECCCChhhhcccHHHHHHHHHHhcc
Q psy1110 120 LVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148 (366)
Q Consensus 120 lV~F~a~wC~~Ck~~~p~~e~la~~~~~~ 148 (366)
+..|+-+.|++|-...+.++++.+.+...
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~~ 31 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGGG 31 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCCC
Confidence 56788889999999999999999998544
No 358
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=24.39 E-value=57 Score=29.15 Aligned_cols=36 Identities=3% Similarity=0.021 Sum_probs=27.5
Q ss_pred CCcchhccCCcc--ceEEeeecCeeeEeecCCccHHHHHHHH
Q psy1110 38 KADPVCTREKAK--KKVRRQKNAEVKYVYENGNTKDKIIEFV 77 (366)
Q Consensus 38 ~~~~lc~~~~I~--Pti~~f~~g~~~~~y~g~r~~~~i~~fi 77 (366)
.+..++.++||+ |||. |.+|.. +.|..+.+.|.+++
T Consensus 160 ~~~~l~~~~gi~gtPtii-~~~G~~---~~G~~~~~~l~~~L 197 (197)
T cd03020 160 ANLALGRQLGVNGTPTIV-LADGRV---VPGAPPAAQLEALL 197 (197)
T ss_pred HHHHHHHHcCCCcccEEE-ECCCeE---ecCCCCHHHHHhhC
Confidence 355899999999 9996 776643 57877788877664
No 359
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=24.25 E-value=1.1e+02 Score=25.76 Aligned_cols=39 Identities=8% Similarity=-0.147 Sum_probs=27.7
Q ss_pred hHHHhhcCCCCeEEEEeeecccCCcchhcc--------CCcc--ceEEeeecC
Q psy1110 16 PLAKEIVKPKAITLGLIERLTEKADPVCTR--------EKAK--KKVRRQKNA 58 (366)
Q Consensus 16 ~la~e~~~~~~I~~~~Vdc~~~~~~~lc~~--------~~I~--Pti~~f~~g 58 (366)
.+++.|. ....+.+||-.+ ..+++.+ +|+. ||+.++.+.
T Consensus 42 ~V~~~l~--~~fv~VkvD~~~--~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~ 90 (124)
T cd02955 42 EVAAILN--ENFVPIKVDREE--RPDVDKIYMNAAQAMTGQGGWPLNVFLTPD 90 (124)
T ss_pred HHHHHHh--CCEEEEEEeCCc--CcHHHHHHHHHHHHhcCCCCCCEEEEECCC
Confidence 5666666 567888999854 4466653 4777 999999864
No 360
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=24.04 E-value=76 Score=31.54 Aligned_cols=68 Identities=13% Similarity=0.055 Sum_probs=48.3
Q ss_pred CcceeeeccccccccccC-------CCCCCCCccceeEEEEeccccc---ccccccccccC-C-eEEEecCCceeeecCC
Q psy1110 240 RGWELRQVGTGKRIKSIN-------SGSFSPRQITGILAAVDVTREK---SLGKRFDIKGF-P-TLKYFRAGSVAFDAGH 307 (366)
Q Consensus 240 ~~~~~~~c~~c~~~~p~~-------~~~~~~~~~~v~~a~vd~~~~~---~l~~~~~I~~~-P-tl~~fk~G~~~~~~~g 307 (366)
++..+..|+.|.+..--+ .+.+......+.+|.|-|.-|. .--..++|.+- + ..++|++|+.+....+
T Consensus 255 ~g~~iiSCPtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~~kv~~ 334 (346)
T TIGR00612 255 RGVEIVACPSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPKAKQPE 334 (346)
T ss_pred CCCeEEECCCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEeEecCH
Confidence 567888999999877553 4456666667899998886553 33456788765 4 4788999997766544
No 361
>KOG3171|consensus
Probab=23.32 E-value=68 Score=29.98 Aligned_cols=55 Identities=9% Similarity=0.021 Sum_probs=36.8
Q ss_pred CCeEEEEeeecccCCcchhccC--CccceEEeeecCeeeEee-------cCCccHHHHHHHHhCcCC
Q psy1110 25 KAITLGLIERLTEKADPVCTRE--KAKKKVRRQKNAEVKYVY-------ENGNTKDKIIEFVRNPQA 82 (366)
Q Consensus 25 ~~I~~~~Vdc~~~~~~~lc~~~--~I~Pti~~f~~g~~~~~y-------~g~r~~~~i~~fi~~~~~ 82 (366)
+.++|.++-....+ ...++ |+-||+.+|++|+..-.| ..+.....+.+|++.+..
T Consensus 189 P~vKFckikss~~g---as~~F~~n~lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~gl 252 (273)
T KOG3171|consen 189 PIVKFCKIKSSNTG---ASDRFSLNVLPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYGL 252 (273)
T ss_pred CceeEEEeeecccc---chhhhcccCCceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcCC
Confidence 47888888774433 44455 444999999998765333 235666778888877654
No 362
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=22.80 E-value=3.7e+02 Score=27.35 Aligned_cols=51 Identities=12% Similarity=-0.042 Sum_probs=37.4
Q ss_pred cceeEEEEecccccccccccccccCCeEEEecCCceeeecCCCCCHHHHHHHHhC
Q psy1110 266 ITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRD 320 (366)
Q Consensus 266 ~~v~~a~vd~~~~~~l~~~~~I~~~Ptl~~fk~G~~~~~~~g~~~~e~l~~fi~~ 320 (366)
+++.-..+|+.-..+=...-+|-.+||+++ ||+ ....|-++.++|+.-|..
T Consensus 146 p~I~H~~IdGa~Fq~Evear~IMaVPtvfl--nGe--~fg~GRmtleeilaki~~ 196 (520)
T COG3634 146 PRIKHTAIDGALFQDEVEARNIMAVPTVFL--NGE--EFGQGRMTLEEILAKIDT 196 (520)
T ss_pred CCceeEEecchhhHhHHHhccceecceEEE--cch--hhcccceeHHHHHHHhcC
Confidence 335566677766655556668999999987 887 345677889998888865
No 363
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=22.49 E-value=1e+02 Score=30.86 Aligned_cols=80 Identities=14% Similarity=-0.004 Sum_probs=54.3
Q ss_pred Ccceeeecccccccccc-------CCCCCCCCccceeEEEEeccccc---ccccccccccCC-eEEEecCCceeeecCCC
Q psy1110 240 RGWELRQVGTGKRIKSI-------NSGSFSPRQITGILAAVDVTREK---SLGKRFDIKGFP-TLKYFRAGSVAFDAGHL 308 (366)
Q Consensus 240 ~~~~~~~c~~c~~~~p~-------~~~~~~~~~~~v~~a~vd~~~~~---~l~~~~~I~~~P-tl~~fk~G~~~~~~~g~ 308 (366)
++..+..|+-|.+..-- +.+.|......++++.+-|.-|. .-...++|.|-+ ..++|++|+.+....+.
T Consensus 264 ~g~~IisCPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk~v~kv~~~ 343 (360)
T PRK00366 264 RGPEVISCPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGEKIKTLPEE 343 (360)
T ss_pred CCCeEEECCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCEEeeeeChH
Confidence 56678889999876544 35566666666899998885332 344677887665 57889999988777665
Q ss_pred CCHHHHHHHHh
Q psy1110 309 RDASRLVEFMR 319 (366)
Q Consensus 309 ~~~e~l~~fi~ 319 (366)
.-.+.|++-|+
T Consensus 344 ~~~~~l~~~i~ 354 (360)
T PRK00366 344 NIVEELEAEIE 354 (360)
T ss_pred hHHHHHHHHHH
Confidence 44455555554
No 364
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=21.99 E-value=71 Score=26.13 Aligned_cols=33 Identities=24% Similarity=0.545 Sum_probs=22.2
Q ss_pred EEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccC
Q psy1110 120 LVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLR 158 (366)
Q Consensus 120 lV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~ 158 (366)
+..|+.++|+.|++....+++. .+.+-.+|..+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~------gi~~~~idi~~ 34 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH------QIPFEERNLFK 34 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCceEEEecCC
Confidence 4467889999999987776653 34455555543
No 365
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=21.69 E-value=54 Score=28.70 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=18.8
Q ss_pred cccccccccccccCCeEEEecCCc
Q psy1110 277 REKSLGKRFDIKGFPTLKYFRAGS 300 (366)
Q Consensus 277 ~~~~l~~~~~I~~~Ptl~~fk~G~ 300 (366)
++...+...+|.|+||+++...+.
T Consensus 157 ~~~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 157 EDQKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHHHcCCCccCEEEEEeCCe
Confidence 344566788999999999986654
No 366
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=21.48 E-value=1.1e+02 Score=30.56 Aligned_cols=55 Identities=15% Similarity=0.121 Sum_probs=38.6
Q ss_pred cceeEEEEeccccc---ccccccccc-cCCe-EEEecCCceeeec-CCCCCHHHHHHHHhC
Q psy1110 266 ITGILAAVDVTREK---SLGKRFDIK-GFPT-LKYFRAGSVAFDA-GHLRDASRLVEFMRD 320 (366)
Q Consensus 266 ~~v~~a~vd~~~~~---~l~~~~~I~-~~Pt-l~~fk~G~~~~~~-~g~~~~e~l~~fi~~ 320 (366)
..++++.|-|.-|. .--..++|. +-|. ..+|++|+.+.+. ....-.+.|++.|++
T Consensus 297 ~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~vd~L~~~I~~ 357 (359)
T PF04551_consen 297 KGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEIVDELIELIEE 357 (359)
T ss_dssp CG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCHHHHHHHHHHH
T ss_pred CCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHHHHHHHHHHHHHh
Confidence 35889998887664 334578887 5564 8889999998888 666556777777654
No 367
>PRK12559 transcriptional regulator Spx; Provisional
Probab=21.34 E-value=73 Score=26.98 Aligned_cols=35 Identities=26% Similarity=0.497 Sum_probs=22.8
Q ss_pred EEEEECCCChhhhcccHHHHHHHHHHhccccEEEeeccCCc
Q psy1110 120 LVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHR 160 (366)
Q Consensus 120 lV~F~a~wC~~Ck~~~p~~e~la~~~~~~v~~~~v~~~~~~ 160 (366)
++.|..++|..|++....+++- .+.+-.+|..+++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~------gi~~~~~di~~~~ 36 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN------QIDYTEKNIVSNS 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc------CCCeEEEEeeCCc
Confidence 4578899999999876555443 3455555555443
No 368
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=20.83 E-value=77 Score=26.07 Aligned_cols=48 Identities=15% Similarity=0.191 Sum_probs=29.7
Q ss_pred CeEEEEeeecccC--CcchhccCCcc---ceEEeeecCeeeEeecC-CccHHHH
Q psy1110 26 AITLGLIERLTEK--ADPVCTREKAK---KKVRRQKNAEVKYVYEN-GNTKDKI 73 (366)
Q Consensus 26 ~I~~~~Vdc~~~~--~~~lc~~~~I~---Pti~~f~~g~~~~~y~g-~r~~~~i 73 (366)
.+.+.-+|-.+.. -..++.++||+ |.+.++++|+.+..=+. ..+.++|
T Consensus 51 ~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 51 EIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp ---EEEEEGGGGHHHHHHHHHHHT----SSEEEEEETTEEEEEEEGGG-SHHHH
T ss_pred cceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEECCEEEEECccccCCHHhc
Confidence 3889999987632 11356788999 99999999987765443 5566654
No 369
>PF00737 PsbH: Photosystem II 10 kDa phosphoprotein; InterPro: IPR001056 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight phosphoprotein PsbH found in PSII. The phosphorylation site of PsbH is located in the N terminus, where reversible phosphorylation is light-dependent and redox-controlled. PsbH is necessary for the photoprotection of PSII, being required for: (1) the rapid degradation of photodamaged D1 core protein to prevent further oxidative damage to the PSII core, and (2) the insertion of newly synthesised D1 protein into the thylakoid membrane []. PsbH may also regulate the transfer of electrons from D2 (Qa) to D1 (Qb) in the reaction core.; GO: 0042301 phosphate ion binding, 0015979 photosynthesis, 0050821 protein stabilization, 0009523 photosystem II, 0016020 membrane; PDB: 3PRR_H 2AXT_h 3BZ2_H 3BZ1_H 4FBY_W 3PRQ_H 3KZI_H 1S5L_h 3A0H_H 3ARC_H ....
Probab=20.48 E-value=43 Score=23.93 Aligned_cols=7 Identities=71% Similarity=1.593 Sum_probs=4.4
Q ss_pred cccCccc
Q psy1110 2 VQSGWGT 8 (366)
Q Consensus 2 ~~~~~~~ 8 (366)
|++||||
T Consensus 18 VaPGWGT 24 (52)
T PF00737_consen 18 VAPGWGT 24 (52)
T ss_dssp -BSTTTT
T ss_pred cCCCccc
Confidence 5677876
Done!