RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1110
(366 letters)
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide
bond, endoplasmic reticulum isomerase, redox-active
center; 1.95A {Homo sapiens} PDB: 2dj2_A
Length = 241
Score = 132 bits (333), Expect = 8e-37
Identities = 64/252 (25%), Positives = 106/252 (42%), Gaps = 28/252 (11%)
Query: 87 VKKKEQDWADTESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
+ ++ E+ V+ L D NFD + ++ +VL+ FYAPWCGHCK+ PEYE+ A +K
Sbjct: 3 LGSEDDLEVKEENGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILK 62
Query: 147 QQRAYYGMGMLRHRPQASNVAVVSSLRNKN---GEPTTH--PSGTPQTSDTPRTQCCHPA 201
+ + + + S L ++ G PT G + RT
Sbjct: 63 DKDPPIPVAKI-------DATSASVLASRFDVSGYPTIKILKKGQAVDYEGSRT------ 109
Query: 202 AHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELR----QVGTGKRIKSIN 257
+ +R+ P+ P L+L ++ + + G K++
Sbjct: 110 QEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEY 169
Query: 258 ---SGSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAG-SVAFDAGHLRDASR 313
+ S R LA VD T E L KRFD+ G+PTLK FR G ++ R+
Sbjct: 170 EKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGRPYDYNGP--REKYG 227
Query: 314 LVEFMRDPTEPP 325
+V++M + +
Sbjct: 228 IVDYMIEQSGAA 239
Score = 87.2 bits (216), Expect = 4e-20
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Query: 269 ILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTEPPPPP 328
+A +D T L RFD+ G+PT+K + G G R +V +R+ ++P P
Sbjct: 69 PVAKIDATSASVLASRFDVSGYPTIKILKKGQAVDYEGS-RTQEEIVAKVREVSQPDWTP 127
Query: 329 PPEPAWAEEPSEVYHLGADNFASTLRKKKHALVMFYAP 366
P P L +NF + LV FYAP
Sbjct: 128 P--------PEVTLVLTKENFDEVVNDADIILVEFYAP 157
Score = 84.5 bits (209), Expect = 4e-19
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 9/85 (10%)
Query: 64 YENGNTKDKIIEFVRNPQATSEEVKKKEQDWADTESEVVHLTDDNFDLVIQEESSVLVMF 123
YE T+++I+ VR + + DW + LT +NFD V+ + +LV F
Sbjct: 104 YEGSRTQEEIVAKVR---------EVSQPDWTPPPEVTLVLTKENFDEVVNDADIILVEF 154
Query: 124 YAPWCGHCKKLKPEYEEAAATMKQQ 148
YAPWCGHCKKL PEYE+AA + ++
Sbjct: 155 YAPWCGHCKKLAPEYEKAAKELSKR 179
Score = 51.4 bits (123), Expect = 1e-07
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 326 PPPPPEPAWAEEPSEVYHLGADNFASTLRKKKHALVMFYAP 366
P + +E + V L NF + + K L+ FYAP
Sbjct: 2 PLGSEDDLEVKEENGVLVLNDANFDNFVADKDTVLLEFYAP 42
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 116 bits (292), Expect = 1e-28
Identities = 52/350 (14%), Positives = 101/350 (28%), Gaps = 75/350 (21%)
Query: 37 EKADPVCTREKAKK---KVRRQKNAEVKYVYENGNTKDKIIEFVRNPQATSEEVKKKEQD 93
A +C+ + V + + + ++ I+ F +
Sbjct: 391 SSAPGICSDLYVFQPSLAVFKGQGTKEYEIHHGKKILYDILAFAK--------------- 435
Query: 94 WADTESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYG 153
S V L NF ++ LV F+APW + L PE +A+ + Q
Sbjct: 436 -ESVNSHVTTLGPQNFP--ASDKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQLKVGT 492
Query: 154 MGMLRHRPQASNVAVVSSLRNKNGEPTT--HPSGTPQTSDTPRTQCCHPAAHSPASPIRQ 211
+ H + + PTT + + + A I
Sbjct: 493 LDCTIHEGLCNMYNI-------QAYPTTVVFNQSSIHEYEGHHS------AEQILEFIED 539
Query: 212 TPHPE-------------PHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSINS 258
+P R + ++ S W S E +++ + +
Sbjct: 540 LRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQVLMPEWKRM--ARTLTG--- 594
Query: 259 GSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGS-VAFDAGHLRDASRLVEF 317
+ +VD + S + +++ +P ++++ S A+ +R
Sbjct: 595 --------LINVGSVDCGQYHSFCTQENVQRYPEIRFYPQKSSKAYQYHSYNGWNRDAYS 646
Query: 318 MRDPTEPPPPPPPEPAWAEEPSEVYHLGADNFAST-LRKKKHALVMFYAP 366
+R P L F L+ K H +V FYAP
Sbjct: 647 LRSWGLGFLPQA-----------SIDLTPQTFNEKVLQGKTHWVVDFYAP 685
Score = 96.0 bits (238), Expect = 1e-21
Identities = 36/322 (11%), Positives = 79/322 (24%), Gaps = 62/322 (19%)
Query: 56 KNAEVKYVYENGNTKDKIIEFVRNPQATSEEVKKKEQDWADTESEVVHLTDDNFDLVIQE 115
++ Y +K+ ++ F S V L+ NF I+
Sbjct: 195 RSGMAAVKYNGDRSKESLVAFAMQH----------------VRSTVTELSTGNFVNAIET 238
Query: 116 ESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNK 175
+ V + +C + + +G + + +
Sbjct: 239 AFAAGVGWLITFCSKGEDCLTSQTRLRLSGM-LDGLVNVGWV----DCDAQDSLCKSLDT 293
Query: 176 NGEPT---------THPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLL 226
T + P + +
Sbjct: 294 TASTTAYFPPGATLNDREKSSVLFLNSLDAKEIYMEIIHNLPDFELLSANQLEDRLAHHR 353
Query: 227 LLLGSYWRPESVGRGWELRQVGTGKRIKSINSGSFSPRQITGILAAVDVTREKSLGKRFD 286
L+ ++ EL+++ T + + I + D + +
Sbjct: 354 WLVFFHFGKNENANDPELKKLKTLLKNEHIQ------------VVRFDCSSAPGICSDLY 401
Query: 287 IKGFPTLKYFRAGSVAFDAGHL--RDASRLVEFMRDPTEPPPPPPPEPAWAEEPSEVYHL 344
+ P+L F+ H + ++ F ++ V L
Sbjct: 402 VF-QPSLAVFKGQGTKEYEIHHGKKILYDILAFAKESVNSH---------------VTTL 445
Query: 345 GADNFASTLRKKKHALVMFYAP 366
G NF ++ K+ LV F+AP
Sbjct: 446 GPQNFPAS--DKEPWLVDFFAP 465
Score = 77.1 bits (189), Expect = 1e-15
Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 63 VYENGNTKDKIIEFVRNPQATSEEVKKKEQDWADTESEVVHLTDDNFD-LVIQEESSVLV 121
Y ++K + ++ + + LT F+ V+Q ++ +V
Sbjct: 623 FYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFL--PQASIDLTPQTFNEKVLQGKTHWVV 680
Query: 122 MFYAPWCGHCKKLKPEYEEAAATMK 146
FYAPW G + PE+E A +K
Sbjct: 681 DFYAPWSGPSQNFAPEFELLARMIK 705
Score = 77.1 bits (189), Expect = 2e-15
Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 15/97 (15%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTEPPPPPP 329
+ AV+ ++ L + + +P+L FR+G A R LV F
Sbjct: 168 IGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQHVRST---- 223
Query: 330 PEPAWAEEPSEVYHLGADNFASTLRKKKHALVMFYAP 366
V L NF + + A V +
Sbjct: 224 -----------VTELSTGNFVNAIETAFAAGVGWLIT 249
Score = 65.5 bits (159), Expect = 8e-12
Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 2/91 (2%)
Query: 56 KNAEVKYVYENGNTKDKIIEFVRNPQATSEEVKKKEQDWADTESEVVHLTDDNFDLVIQE 115
K+ +++ Y+ K ++ S D E++ L FD +
Sbjct: 75 KDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDD--PEIITLERREFDAAVNS 132
Query: 116 ESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
V FY+P H L P + E A +
Sbjct: 133 GELWFVNFYSPGSSHSHDLAPTWREFAKEVD 163
Score = 52.4 bits (125), Expect = 1e-07
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 4/63 (6%)
Query: 269 ILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGH----LRDASRLVEFMRDPTEP 324
VD ++ IK +P++K ++ RDA + + E
Sbjct: 709 RAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLET 768
Query: 325 PPP 327
Sbjct: 769 LQS 771
Score = 34.0 bits (77), Expect = 0.088
Identities = 11/79 (13%), Positives = 22/79 (27%), Gaps = 4/79 (5%)
Query: 288 KGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTEPPPPPPPEPAWAEEPSEVYHLGAD 347
+ + LK G + E + ++ E+ L
Sbjct: 69 RAYEVLKDEDLRKKYDKYGEKGL----EDNQGGQYESWSYYRYDFGIYDDDPEIITLERR 124
Query: 348 NFASTLRKKKHALVMFYAP 366
F + + + V FY+P
Sbjct: 125 EFDAAVNSGELWFVNFYSP 143
>1mek_A Protein disulfide isomerase; electron transport, redox-active
center, endoplasmic reticulum; NMR {Homo sapiens} SCOP:
c.47.1.2
Length = 120
Score = 101 bits (255), Expect = 8e-27
Identities = 25/56 (44%), Positives = 32/56 (57%)
Query: 93 DWADTESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
D + E V+ L NF + +LV FYAPWCGHCK L PEY +AA +K +
Sbjct: 1 DAPEEEDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAE 56
Score = 65.8 bits (161), Expect = 1e-13
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 269 ILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHL--RDASRLVEFMRDPTEPP 325
LA VD T E L +++ ++G+PT+K+FR G A + R+A +V +++ T P
Sbjct: 61 RLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGPA 119
Score = 48.1 bits (115), Expect = 3e-07
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 336 EEPSEVYHLGADNFASTLRKKKHALVMFYAP 366
EE V L NFA L K+ LV FYAP
Sbjct: 4 EEEDHVLVLRKSNFAEALAAHKYLLVEFYAP 34
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 140
Score = 100 bits (250), Expect = 6e-26
Identities = 27/65 (41%), Positives = 38/65 (58%)
Query: 84 SEEVKKKEQDWADTESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAA 143
S + E+ V L D NFD + ++ +VL+ FYAPWCGHCK+ PEYE+ A+
Sbjct: 2 SSGSSGDDDLEVKEENGVWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIAS 61
Query: 144 TMKQQ 148
T+K
Sbjct: 62 TLKDN 66
Score = 74.7 bits (184), Expect = 1e-16
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 269 ILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTEPPPPP 328
+A +D T L +FD+ G+PT+K + G G R +V +R+ ++P P
Sbjct: 71 AVAKIDATSASMLASKFDVSGYPTIKILKKGQAVDYDG-SRTQEEIVAKVREVSQPDWTP 129
Query: 329 PPEPAWAEEPSE 340
PPE PS
Sbjct: 130 PPE--VTSGPSS 139
Score = 48.9 bits (117), Expect = 2e-07
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 328 PPPEPAWAEEPSEVYHLGADNFASTLRKKKHALVMFYAP 366
+ +E + V+ L NF + + K L+ FYAP
Sbjct: 6 SGDDDLEVKEENGVWVLNDGNFDNFVADKDTVLLEFYAP 44
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin
like domain, redox, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 133
Score = 98.6 bits (246), Expect = 2e-25
Identities = 27/56 (48%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 94 WADTESEVVHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
+ + +V+ LTDD+FD V+ E +V FYAPWCGHCK L+PE+ AA+ +K+Q
Sbjct: 2 SSGSSGDVIELTDDSFDKNVLDSEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQ 57
Score = 75.5 bits (186), Expect = 7e-17
Identities = 24/63 (38%), Positives = 30/63 (47%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTEPPPPPP 329
LAAVD T + L R+ I+GFPT+K F+ G D R S +V D PPP
Sbjct: 64 LAAVDATVNQVLASRYGIRGFPTIKIFQKGESPVDYDGGRTRSDIVSRALDLFSDNAPPP 123
Query: 330 PEP 332
Sbjct: 124 ELL 126
Score = 43.5 bits (103), Expect = 1e-05
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 333 AWAEEPSEVYHLGADNFAST-LRKKKHALVMFYAP 366
+ +V L D+F L + +V FYAP
Sbjct: 1 GSSGSSGDVIELTDDSFDKNVLDSEDVWMVEFYAP 35
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing
protein 7, endoplasmic reticulum, redox-active center,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 130
Score = 95.2 bits (237), Expect = 4e-24
Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 94 WADTESEVVHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
+ +V+ LT NF+ VIQ + LV FYAPWCGHC++L PE+++AA +K
Sbjct: 12 LYSSSDDVIELTPSNFNREVIQSDGLWLVEFYAPWCGHCQRLTPEWKKAATALK 65
Score = 63.6 bits (155), Expect = 1e-12
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGS-VAFDAGHLRDASRLVEFMRDPTEPPPP 327
+ AV+ + +SLG ++ ++GFPT+K F A D R +V+ P
Sbjct: 70 VGAVNADKHQSLGGQYGVQGFPTIKIFGANKNKPEDYQGGRTGEAIVDAALSALRSGPS 128
Score = 40.5 bits (95), Expect = 1e-04
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 1/35 (2%)
Query: 333 AWAEEPSEVYHLGADNFAST-LRKKKHALVMFYAP 366
+V L NF ++ LV FYAP
Sbjct: 11 GLYSSSDDVIELTPSNFNREVIQSDGLWLVEFYAP 45
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin,
thioredoxin fold, oxidoreductase, reductive methylation;
HET: MLY; 2.05A {Homo sapiens}
Length = 244
Score = 97.8 bits (243), Expect = 7e-24
Identities = 38/247 (15%), Positives = 70/247 (28%), Gaps = 40/247 (16%)
Query: 95 ADTESEVVHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYG 153
+ L D V+ S+ V F+A WCGHC P + A
Sbjct: 8 YSPSDPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWXALAED--------- 58
Query: 154 MGMLRHRPQASNVAVVSSLRNKNGE----------PT----------THPSGTPQTSDTP 193
++ A +A + N PT + P
Sbjct: 59 ---VKAWRPALYLAALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADV 115
Query: 194 RTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRI 253
+T + P P P + + E + +E + +
Sbjct: 116 QTLRERLIDALESHHDTWPPACPPLEPAXLEEIDGFFARNNEEYLALIFEXGGSYLAREV 175
Query: 254 KSINSGSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLK-YFRAGSVAFDAGHLRDAS 312
S + G+ + E ++ ++F + FP+ FR GSV+ + S
Sbjct: 176 AL----DLSQHK--GVAVRRVLNTEANVVRKFGVTDFPSCYLLFRNGSVSRVPVLMESRS 229
Query: 313 RLVEFMR 319
+++
Sbjct: 230 FYTAYLQ 236
Score = 64.6 bits (157), Expect = 4e-12
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 9/103 (8%)
Query: 270 LAAVDVTRE--KSLGKRFDIKGFPTLKYFRAGSV----AFDAGHLRDASRLVEFMRDPTE 323
LAA+D E ++ + F+I GFPT+++F A + A D L E + D E
Sbjct: 68 LAALDCAEETNSAVCRDFNIPGFPTVRFFXAFTXNGSGAVFPVAGADVQTLRERLIDALE 127
Query: 324 PPPPPPPEPAWAEEPSEVYHLGADNFASTLRKKKHALVMFYAP 366
P A P E L + +++ ++F
Sbjct: 128 SHHDTWPP---ACPPLEPAXLEEIDGFFARNNEEYLALIFEXG 167
Score = 43.1 bits (101), Expect = 6e-05
Identities = 9/84 (10%), Positives = 22/84 (26%), Gaps = 4/84 (4%)
Query: 57 NAEVKYVYENGNTKDKIIEFVRNPQATSEEVKKKEQDWADTESEVVHLTDDNFDLVIQEE 116
N G + E + + E A E L + + E
Sbjct: 102 NGSGAVFPVAGADVQTLRERLIDAL----ESHHDTWPPACPPLEPAXLEEIDGFFARNNE 157
Query: 117 SSVLVMFYAPWCGHCKKLKPEYEE 140
+ ++F +++ + +
Sbjct: 158 EYLALIFEXGGSYLAREVALDLSQ 181
Score = 35.7 bits (82), Expect = 0.013
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 333 AWAEEPSEVYHLGADNFASTLRK-KKHALVMFYAP 366
A + L AD + + V F+A
Sbjct: 6 ALYSPSDPLTLLQADTVRGAVLGSRSAWAVEFFAS 40
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 126
Score = 93.5 bits (233), Expect = 1e-23
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 94 WADTESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
+ + V +TD+N+ +++ + ++ FYAPWC C+ L+PE+E A +
Sbjct: 2 SSGSSGNVRVITDENWRELLEGD--WMIEFYAPWCPACQNLQPEWESFAEWGE 52
Score = 71.6 bits (176), Expect = 2e-15
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTEPPPPPP 329
+A VDVT + L RF I PT+ + + G G R + F+ D P
Sbjct: 58 IAKVDVTEQPGLSGRFIINALPTIYHCKDGEFRRYQG-PRTKKDFINFISDKEWKSIEPV 116
Query: 330 PEPAWAEEPSE 340
+W PS
Sbjct: 117 --SSWFSGPSS 125
Score = 41.9 bits (99), Expect = 4e-05
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 333 AWAEEPSEVYHLGADNFASTLRKKKHALVMFYAP 366
+ V + +N+ L + ++ FYAP
Sbjct: 1 GSSGSSGNVRVITDENWRELL--EGDWMIEFYAP 32
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP:
c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Length = 504
Score = 100 bits (249), Expect = 2e-23
Identities = 26/64 (40%), Positives = 38/64 (59%)
Query: 90 KEQDWADTESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQR 149
+++ A +S VV L D+F+ IQ VL F+APWCGHCK + PEY +AA T+ ++
Sbjct: 5 QQEAVAPEDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKN 64
Query: 150 AYYG 153
Sbjct: 65 ITLA 68
Score = 87.6 bits (216), Expect = 3e-19
Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 29 LGLIERLTEKADPVCTREKAKKKVRRQKNAEVKYVYENGNTKDKIIEFVRNPQATSEE-V 87
L + E+ A T + + + A + + I V++ +
Sbjct: 287 LNMKEQFPLFAIHDMTEDLKYGLPQLSEEAFDELSDKIVLESKAIESLVKDFLKGDASPI 346
Query: 88 KKKEQDWADTESEVVHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
K ++ + + +S V L N D +V + VLV++YAPWCGHCK+L P Y+E A T
Sbjct: 347 VKSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYA 406
Query: 147 Q 147
Sbjct: 407 N 407
Score = 67.6 bits (164), Expect = 2e-12
Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 9/100 (9%)
Query: 269 ILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSV--AFDAGHLRDASRLVEFMRDPTEPPP 326
LA +D T + L +I GFP+LK F+ V + D R A +V+FM ++P
Sbjct: 66 TLAQIDCTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQPAV 125
Query: 327 PPPPEPAWAEEPSEVYHLGADNFASTLRKKKHALVMFYAP 366
+ + + F A
Sbjct: 126 AVVADLPAYLANE-------TFVTPVIVQSGKIDADFNAT 158
Score = 56.8 bits (136), Expect = 5e-09
Identities = 48/371 (12%), Positives = 92/371 (24%), Gaps = 62/371 (16%)
Query: 18 AKEIVKPKAITLGLIERLTEKADPVCTREKAKK----KVRRQKNAEVKYVYENGNTKDKI 73
A E + K ITL I+ + +C K+ + + YE T + I
Sbjct: 56 AAETLVEKNITLAQIDCTENQD--LCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAI 113
Query: 74 IEFVRNPQATSEEVKKKEQDWADTESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKK 133
++F+ + V + + VI + + F A + K
Sbjct: 114 VQFMIKQSQPAVAVVADLPAYLAN--------ETFVTPVIVQSGKIDADFNATFYSMANK 165
Query: 134 LKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGEPTTHPSGTPQTSDTP 193
+Y+ +A + L + EP + +G
Sbjct: 166 HFNDYDFVSAENADDDFKLSI----------------YLPSAMDEPVVY-NGKKADIADA 208
Query: 194 RTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRI 253
+ L L L E ++ R
Sbjct: 209 DVFEKWLQVEALPYFGEIDGSVFAQYVESGLPLGYLFYNDEEELEEYKPLFTELAKKNRG 268
Query: 254 KSINSGSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGS------------- 300
++D + ++K L +
Sbjct: 269 LMNF-------------VSIDARKFGRHAGNLNMKEQFPLFAIHDMTEDLKYGLPQLSEE 315
Query: 301 --VAFDAGHLRDASRLVEFMRDPTEPPPPPPPEPAWAEE--PSEVYHLGADNFAST-LRK 355
+ ++ + ++D + P + E S V+ L N
Sbjct: 316 AFDELSDKIVLESKAIESLVKDFLKGDASPIVKSQEIFENQDSSVFQLVGKNHDEIVNDP 375
Query: 356 KKHALVMFYAP 366
KK LV++YAP
Sbjct: 376 KKDVLVLYYAP 386
Score = 55.6 bits (133), Expect = 1e-08
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Query: 269 ILAAVDVTREKSLGKRFDIKGFPTLKYFRAGS----VAFDAGHLRDASRLVEFMRDPTEP 324
++A +D T + I+G+PT+ + G V + R L +F+++
Sbjct: 413 LIAKLDHTENDV--RGVVIEGYPTIVLYPGGKKSESVVYQGS--RSLDSLFDFIKENGHF 468
Query: 325 PPPPPPEPAWAEEPSE 340
A+E +
Sbjct: 469 DVDGKALYEEAQEKAA 484
Score = 51.4 bits (122), Expect = 3e-07
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 327 PPPPEPAWAEEPSEVYHLGADNFASTLRKKKHALVMFYAP 366
+ A A E S V L D+F ++ L F+AP
Sbjct: 2 GHMQQEAVAPEDSAVVKLATDSFNEYIQSHDLVLAEFFAP 41
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines
missing, unknown funct; 1.50A {Trypanosoma cruzi}
Length = 127
Score = 92.0 bits (229), Expect = 5e-23
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 84 SEEVKKKEQDWADTESEVVHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAA 142
+ V + S VV LTD+ FD +V+ E V V++Y PW H +++ +
Sbjct: 4 ASNVANDG----ERPSRVVELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLS 59
Query: 143 ATMKQQR 149
+ Q+R
Sbjct: 60 MSQSQKR 66
Score = 56.6 bits (137), Expect = 3e-10
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 269 ILAAVDVTREKSLGKRFDIKGFPTLKYFRAGS----VAFDAGHLRDASRLVEFMRDPT 322
+ A +D + + +R + GFPT++Y+ + R S + F+ T
Sbjct: 72 VAARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQEPFEYSGQ--RYLSLVDSFVFQNT 127
Score = 47.3 bits (113), Expect = 4e-07
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 330 PEPAWAEEPSEVYHLGADNFAST-LRKKKHALVMFYAP 366
E PS V L + F S + +K V++Y P
Sbjct: 6 NVANDGERPSRVVELTDETFDSIVMDPEKDVFVLYYVP 43
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold,
isomerase; 2.00A {Homo sapiens} PDB: 2diz_A
Length = 111
Score = 90.8 bits (226), Expect = 9e-23
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 97 TESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQR 149
S V+ LT++NFD I E + FYAPWCGHCK L P +EE +
Sbjct: 3 LGSTVLALTENNFDDTIAEGI-TFIKFYAPWCGHCKTLAPTWEELSKKEFPGL 54
Score = 65.0 bits (159), Expect = 2e-13
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMR 319
+A VD T E+++ ++ ++G+PTL FR G + RD L F+
Sbjct: 59 IAEVDCTAERNICSKYSVRGYPTLLLFRGGKKVSEHSGGRDLDSLHRFVL 108
Score = 40.7 bits (96), Expect = 8e-05
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 335 AEEPSEVYHLGADNFASTLRKKKHALVMFYAP 366
S V L +NF T+ + + FYAP
Sbjct: 1 GPLGSTVLALTENNFDDTI-AEGITFIKFYAP 31
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 133
Score = 91.3 bits (227), Expect = 1e-22
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 94 WADTESEVVHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
+ + V + FD +V+ + VL+ FYAPWCGHCK+L+P Y K
Sbjct: 2 SSGSSGPVKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYK 55
Score = 63.2 bits (154), Expect = 1e-12
Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 269 ILAAVDVTREKSLGKRFDIKGFPTLKYFRAGS----VAFDAGHLRDASRLVEFMRDPTEP 324
++A +D T ++ ++GFPT+ + +G + F+ G+ RD L +F+ +
Sbjct: 61 VIAKMDATANDITNDQYKVEGFPTIYFAPSGDKKNPIKFEGGN-RDLEHLSKFIDEHATK 119
Query: 325 PPPPPPEPAWAEE 337
E +
Sbjct: 120 RSRTKEELSGPSS 132
Score = 39.3 bits (92), Expect = 4e-04
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 333 AWAEEPSEVYHLGADNFAST-LRKKKHALVMFYAP 366
+ V + F + + KK L+ FYAP
Sbjct: 1 GSSGSSGPVKVVVGKTFDAIVMDPKKDVLIEFYAP 35
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus
musculus} PDB: 3t59_A*
Length = 519
Score = 94.6 bits (234), Expect = 2e-21
Identities = 47/268 (17%), Positives = 75/268 (27%), Gaps = 21/268 (7%)
Query: 96 DTESEVVHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGM 154
+ + L D+ V+ S+ V F+A WCGH P ++E A +K R +
Sbjct: 9 SSSDPLTLLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNL 68
Query: 155 GML-----RHRPQASNVAVVSSLRNKNGEPT--THPSGTPQTSDTPRTQCCHPAAHSPAS 207
+L + + G PT + T S
Sbjct: 69 AVLDCAEETNSAVCREFNI-------AGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMR 121
Query: 208 PIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRIKSI--NSGSFSPRQ 265
I P L R +R S + Q
Sbjct: 122 LIDALESHRDTWPPACPPLEPAKLNDIDGFFTRNKADYLALVFEREDSYLGREVTLDLSQ 181
Query: 266 ITGILAAVDVTREKSLGKRFDIKGFPTLK-YFRAGSVAFDAGHLRDASRLVEFMR---DP 321
+ + E L +F + FP+ R GSV+ + S ++R
Sbjct: 182 YHAVAVRRVLNTESDLVNKFGVTDFPSCYLLLRNGSVSRVPVLVESRSFYTSYLRGLPGL 241
Query: 322 TEPPPPPPPEPAWAEEPSEVYHLGADNF 349
T PP P A++ + AD
Sbjct: 242 TRDAPPTTATPVTADKIAPTVWKFADRS 269
Score = 55.0 bits (131), Expect = 2e-08
Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 2/99 (2%)
Query: 270 LAAVDVTRE--KSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTEPPPP 327
LA +D E ++ + F+I GFPT+++F+A + L A V+ +R
Sbjct: 68 LAVLDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAGANVQTLRMRLIDALE 127
Query: 328 PPPEPAWAEEPSEVYHLGADNFASTLRKKKHALVMFYAP 366
+ P D R K L + +
Sbjct: 128 SHRDTWPPACPPLEPAKLNDIDGFFTRNKADYLALVFER 166
Score = 34.2 bits (77), Expect = 0.070
Identities = 7/38 (18%), Positives = 11/38 (28%), Gaps = 1/38 (2%)
Query: 330 PEPAWAEEPSEVYHLGADNFASTLRKK-KHALVMFYAP 366
+ L AD+ T+ V F+A
Sbjct: 3 HMSVLYSSSDPLTLLDADSVRPTVLGSSSAWAVEFFAS 40
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone,
endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Length = 382
Score = 93.1 bits (231), Expect = 2e-21
Identities = 18/54 (33%), Positives = 28/54 (51%)
Query: 95 ADTESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
SE+ L +N D ++ LV FYA WC + L P +EEA+ +K++
Sbjct: 1 GPLGSEITSLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEE 54
Score = 69.6 bits (170), Expect = 2e-13
Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 16/98 (16%)
Query: 269 ILAAVDVTREKSLGKRFDIKGFPTLKYFRAGS-VAFDAGHLRDASRLVEFMRDPTEPPPP 327
+ A VD + + +R+ I +PTLK FR G + + R L +++R P
Sbjct: 62 VFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDP-- 119
Query: 328 PPPEPAWAEEPSEVYHLGADNFASTLRKKKHALVMFYA 365
+ + +TL + K ++ ++
Sbjct: 120 -------------IQEIRDLAEITTLDRSKRNIIGYFE 144
Score = 45.0 bits (106), Expect = 2e-05
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 335 AEEPSEVYHLGADNFASTLRKKKHALVMFYAP 366
SE+ L +N L ALV FYA
Sbjct: 1 GPLGSEITSLDTENIDEILNNADVALVNFYAD 32
Score = 35.7 bits (82), Expect = 0.021
Identities = 10/140 (7%), Positives = 36/140 (25%), Gaps = 38/140 (27%)
Query: 17 LAKEIVKPKAITLGLIERLTEKADPVCTREK--AKK-KVRR-------QKNAEVKYVYEN 66
+ +E + + D C + A++ ++ + + +K Y
Sbjct: 51 IKEEFPNENQVVFA-------RVD--CDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRG 101
Query: 67 GNTKDKIIEFVRNPQATSEEVKKKEQDWADTESEVVHLTDDNFDLVIQEESSVLVMFYAP 126
+ + +++R + + D + ++ ++
Sbjct: 102 QRSVKALADYIRQ----------------QKSDPIQEIRDLAEITTLDRSKRNIIGYFE- 144
Query: 127 WCGHCKKLKPEYEEAAATMK 146
+E A +
Sbjct: 145 --QKDSDNYRVFERVANILH 162
Score = 32.3 bits (73), Expect = 0.27
Identities = 12/98 (12%), Positives = 28/98 (28%), Gaps = 5/98 (5%)
Query: 56 KNAEVKYVYENGNTKDKIIEFVRNPQATSEEVKKKE--QDWADTES--EVVHLTDDNFDL 111
+ Y N K + + +W + V +T +N +
Sbjct: 172 GDVSKPERYSGDNIIYKPPGHSAPDMVYLGAMTNFDVTYNWIQDKCVPLVREITFENGEE 231
Query: 112 VIQEESSVLVMFYAPW-CGHCKKLKPEYEEAAATMKQQ 148
+ +E L++F+ + + E + K
Sbjct: 232 LTEEGLPFLILFHMKEDTESLEIFQNEVARQLISEKGT 269
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC,
endoplasmic reticulum, glycoprotein, redox-active
center; 2.00A {Saccharomyces cerevisiae}
Length = 298
Score = 92.1 bits (228), Expect = 2e-21
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 96 DTESEVVHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
D++ + LT +FD + + LV FYAPWCGHCKKL + +AA +
Sbjct: 14 DSDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLD 65
Score = 60.9 bits (147), Expect = 1e-10
Identities = 19/124 (15%), Positives = 32/124 (25%), Gaps = 27/124 (21%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHL-----------------RDAS 312
D+ + K+L ++D+ GFPTL FR + R +
Sbjct: 72 AVNCDLNKNKALCAKYDVNGFPTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLA 131
Query: 313 RLVEFMRDPTEPPPPPPPEPAWAE------EPSEVYHLGADNFASTLRKK----KHALVM 362
+V+F V + S + K
Sbjct: 132 PIVDFSLSRIRSYVKKFVRIDTLGSLLRKSPKLSVVLFSKQDKISPVYKSIALDWLGKFD 191
Query: 363 FYAP 366
FY+
Sbjct: 192 FYSI 195
Score = 48.2 bits (114), Expect = 2e-06
Identities = 17/113 (15%), Positives = 31/113 (27%), Gaps = 12/113 (10%)
Query: 46 EKAKKKVRRQKNAEVKYVYENGNTKDKIIEFVRN---PQATSEEVKKKEQDWADTESEVV 102
K ++ +A VY T I++F + ++
Sbjct: 106 SKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIRSYVKKFVRIDTLGSLLRKSPKLS 165
Query: 103 HLTDDNFDLVIQEESSV------LVMFYAPWCGHCKKLK---PEYEEAAATMK 146
+ D + S+ FY+ K+L P YE+ K
Sbjct: 166 VVLFSKQDKISPVYKSIALDWLGKFDFYSISNKKLKQLTDMNPTYEKTPEIFK 218
Score = 37.4 bits (86), Expect = 0.006
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 336 EEPSEVYHLGADNFASTLRKKKH-ALVMFYAP 366
+ + L +F + + +LV FYAP
Sbjct: 14 DSDPHISELTPKSFDKAIHNTNYTSLVEFYAP 45
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola
insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Length = 121
Score = 84.7 bits (210), Expect = 2e-20
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 95 ADTESEVVHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
+E V + N++ +V+ + VL+ FYAPWCGHCK L P+YEE A
Sbjct: 3 LGSEGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYA 55
Score = 44.3 bits (105), Expect = 4e-06
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 269 ILAAVDVTREKSLGKRFDIKGFPTLKYFRAGS----VAFDAGHLRDASRLVEFMRDPTEP 324
++A VD T +I+GFPT+K + AG+ V + R L++F+ + +
Sbjct: 64 VIAKVDATANDVP---DEIQGFPTIKLYPAGAKGQPVTYSGS--RTVEDLIKFIAENGKY 118
Query: 325 P 325
Sbjct: 119 K 119
Score = 38.1 bits (89), Expect = 8e-04
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 332 PAWAEEPSEVYHLGADNFAST-LRKKKHALVMFYAP 366
P +E P V + A N+ L K L+ FYAP
Sbjct: 2 PLGSEGP--VTVVVAKNYNEIVLDDTKDVLIEFYAP 35
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif,
endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Length = 122
Score = 84.0 bits (208), Expect = 4e-20
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 99 SEVVHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
+ LT F+ V+Q ++ +V FYAPWCG C+ PE+E A +K
Sbjct: 3 QASIDLTPQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPEFELLARMIK 51
Score = 51.6 bits (124), Expect = 1e-08
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 4/62 (6%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGH----LRDASRLVEFMRDPTEPP 325
VD ++ IK +P++K ++ RDA + + E
Sbjct: 56 AGKVDCQAYPQTCQKAGIKAYPSVKLYQYERAKKSIWEEQINSRDAKTIAALIYGKLETL 115
Query: 326 PP 327
Sbjct: 116 QS 117
Score = 30.4 bits (69), Expect = 0.34
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 338 PSEVYHLGADNFAST-LRKKKHALVMFYAP 366
P L F L+ K H +V FYAP
Sbjct: 2 PQASIDLTPQTFNEKVLQGKTHWVVDFYAP 31
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A
{Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Length = 361
Score = 88.2 bits (218), Expect = 1e-19
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 52 VRRQKNAEVKYVYENGNTKDKIIEFVRNPQA--TSEEVKKKEQDWADTESEVVHLTDDNF 109
+ ++ T ++I EF + +E + V L NF
Sbjct: 200 ITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNF 259
Query: 110 D-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
+ + E+ +V V FYAPWCGHCK+L P +++ T K
Sbjct: 260 EDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYK 297
Score = 58.5 bits (141), Expect = 8e-10
Identities = 12/91 (13%), Positives = 32/91 (35%), Gaps = 17/91 (18%)
Query: 59 EVKYVYENGNTKDKIIEFVRNPQATSEEVKKKEQDWADTESEVVHLTDDNFD-LVIQEES 117
E + +E TK+ +++F+++ V+ T+ + E
Sbjct: 93 EGRNNFEGEVTKENLLDFIKHN----------------QLPLVIEFTEQTAPKIFGGEIK 136
Query: 118 SVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
+ +++F ++ AA + K +
Sbjct: 137 THILLFLPKSVSDYDGKLSNFKTAAESFKGK 167
Score = 52.0 bits (124), Expect = 1e-07
Identities = 25/111 (22%), Positives = 36/111 (32%), Gaps = 9/111 (8%)
Query: 265 QITGILAAVDVTREKSLGKRFDIKG--FPTLKYFRAGSVAFDAGH---LRDASRLVEFMR 319
+I I D T + + + F +K P ++ A R+ EF
Sbjct: 167 KILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCH 226
Query: 320 DPTE---PPPPPPPEPAWAEEPSEVYHLGADNFAST-LRKKKHALVMFYAP 366
E P E + V L NF +KK+ V FYAP
Sbjct: 227 RFLEGKIKPHLMSQELPEDWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAP 277
Score = 34.7 bits (79), Expect = 0.045
Identities = 7/93 (7%), Positives = 23/93 (24%), Gaps = 16/93 (17%)
Query: 275 VTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTEPPPPPPPEPAW 334
+T + ++ + + + + + L++F++ P
Sbjct: 68 ITSNSDVFSKYQLDKDGVVLFKKFDEGRNNFEGEVTKENLLDFIKHNQLPL--------- 118
Query: 335 AEEPSEVYHLGADNFASTLRK-KKHALVMFYAP 366
V K +++F
Sbjct: 119 ------VIEFTEQTAPKIFGGEIKTHILLFLPK 145
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform;
glycoprotein, calcium-binding, muscle protein, metal
binding protein; 2.40A {Canis lupus familiaris} PDB:
2vaf_A
Length = 350
Score = 85.9 bits (212), Expect = 7e-19
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 94 WADTESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQ 147
D + VV LT+ NF V+ ++ VL ++Y K + +++ ++
Sbjct: 6 TYDGKDRVVSLTEKNFKQVL-KKYDVLCLYYHESVSSDKVAQKQFQLKEIVLEL 58
Score = 64.3 bits (156), Expect = 9e-12
Identities = 19/96 (19%), Positives = 31/96 (32%), Gaps = 14/96 (14%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTEPPPPPP 329
VD +E L K+ +L + G A LVEF+ D E
Sbjct: 70 FVMVDAKKEAKLAKKLGFDEEGSLYVLKGDRTIEFDGE-FAADVLVEFLLDLIED----- 123
Query: 330 PEPAWAEEPSEVYHLGADNFASTLRKKKHALVMFYA 365
P E+ + + A + + L+ F+
Sbjct: 124 --------PVEIINSKLEVQAFERIEDQIKLIGFFK 151
Score = 38.5 bits (89), Expect = 0.002
Identities = 12/92 (13%), Positives = 30/92 (32%), Gaps = 17/92 (18%)
Query: 61 KYVYENGNTKDKIIEFVRNPQATSEEVKKKEQDWADTESEVVHLTDDNFDLVIQEESSVL 120
++ D ++EF+ D + E+++ + E+ L
Sbjct: 101 TIEFDGEFAADVLVEFLL--------------DLIEDPVEIINSKLEVQAFERIEDQIKL 146
Query: 121 VMFYAPWCGHCKKLKPEYEEAAATMKQQRAYY 152
+ F+ + +EEAA + ++
Sbjct: 147 IGFFK---SEESEYYKAFEEAAEHFQPYIKFF 175
Score = 37.0 bits (85), Expect = 0.007
Identities = 9/103 (8%), Positives = 27/103 (26%), Gaps = 18/103 (17%)
Query: 51 KVRRQKNAEVKYVYENGNTKDKIIEFVRNPQATSEEVKKKEQDWADTESEVVHLTDDNFD 110
E + + T+++++EFV+ + L ++
Sbjct: 194 DFYEPFMDEPIAIPDKPYTEEELVEFVK----------------EHQRPTLRRLRPEDMF 237
Query: 111 LVIQEE--SSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAY 151
+++ +V F + ++ A
Sbjct: 238 ETWEDDLNGIHIVAFAERSDPDGYEFLEILKQVARDNTDNPDL 280
Score = 36.2 bits (83), Expect = 0.012
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 333 AWAEEPSEVYHLGADNFASTLRKKKHALVMFYAP 366
+ V L NF L KK L ++Y
Sbjct: 5 PTYDGKDRVVSLTEKNFKQVL-KKYDVLCLYYHE 37
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum,
glycoprotein, immunoglobulin domain, microsome, protein
disulfide isomerase, thioredoxin-like FO like domain;
HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Length = 481
Score = 85.7 bits (211), Expect = 1e-18
Identities = 28/51 (54%), Positives = 36/51 (70%), Gaps = 3/51 (5%)
Query: 99 SEVVHLTDDNFDLVIQEESS---VLVMFYAPWCGHCKKLKPEYEEAAATMK 146
S+V+ LTDDNF+ I + S +LV F+APWCGH K+L PEYE AA +K
Sbjct: 1 SDVLELTDDNFESRISDTGSAGLMLVEFFAPWCGHAKRLAPEYEAAATRLK 51
Score = 73.4 bits (179), Expect = 2e-14
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 61 KYVYENGNTKDKIIEFVRNPQATSEEVKKK-EQDWADTESEVVHLTDDNFD-LVIQEESS 118
E + F+++ + + K E + V + +NFD +V E
Sbjct: 313 VMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDGPVKVVVAENFDEIVNNENKD 372
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
VL+ FYAPWCGHCK L+P+Y+E + +
Sbjct: 373 VLIEFYAPWCGHCKNLEPKYKELGEKLSKD 402
Score = 69.9 bits (170), Expect = 3e-13
Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 14/97 (14%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTEPPPPPP 329
LA VD T + ++ + G+PTLK FR G A R A +V ++ P
Sbjct: 56 LAKVDCTANTNTCNKYGVSGYPTLKIFRDGEEAGAYDGPRTADGIVSHLKKQAGPA---- 111
Query: 330 PEPAWAEEPSEVYHLGADNFASTLRKKKHALVMFYAP 366
V + F + K ++V F+
Sbjct: 112 ----------SVPLRTEEEFKKFISDKDASIVGFFDD 138
Score = 52.9 bits (126), Expect = 8e-08
Identities = 14/76 (18%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 269 ILAAVDVTREKSLGKRFDIKGFPTLKYFRAGS----VAFDAGHLRDASRLVEFMRDPTEP 324
++A +D T + ++++GFPT+ + A ++ G R+ S + +++
Sbjct: 406 VIAKMDAT-ANDVPSPYEVRGFPTIYFSPANKKLNPKKYEGG--RELSDFISYLQREATN 462
Query: 325 PPPPPPEPAWAEEPSE 340
PP E ++ ++
Sbjct: 463 PPVIQEEKPKKKKKAQ 478
Score = 44.1 bits (103), Expect = 6e-05
Identities = 47/326 (14%), Positives = 91/326 (27%), Gaps = 43/326 (13%)
Query: 56 KNAEVKYVYENGNTKDKIIEFVRNPQATSEEVKKKEQDWADTESEVVHLTDDNFDLVIQE 115
++ E Y+ T D I+ ++ + V T++ F I +
Sbjct: 83 RDGEEAGAYDGPRTADGIVSHLKKQAGPAS---------------VPLRTEEEFKKFISD 127
Query: 116 ESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGM----GMLRHRPQASNVAVV-- 169
+ + +V F+ E+ +AA+ ++ + + + + +
Sbjct: 128 KDASIVGFFDDSFSEAHS---EFLKAASNLRDNYRFAHTNVESLVNEYDDNGEGIILFRP 184
Query: 170 SSLRNKNGEPTTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLL 229
S L NK + T + TS + + LL+
Sbjct: 185 SHLTNKFEDKTVAYTEQKMTSGKIKK----FIQENIFGICPHMTEDNKDLIQGKDLLIAY 240
Query: 230 GSYWRPESVGRGWELRQVGTGKRIKSINSGSFSPRQITGILAAVDVTREKSLGKRFDIK- 288
++ R R+ + + F A F ++
Sbjct: 241 YDVDYEKNAKGSNYWR-----NRVMMV-AKKFLDAGHKLNFAVASRKTFSHELSDFGLES 294
Query: 289 ---GFPTLKYFRAGS--VAFDAGHLRDASRLVEFMRDPTEPPPPPPP--EPAWAEEPSEV 341
P + A RD L F++D + EP V
Sbjct: 295 TAGEIPVVAIRTAKGEKFVMQEEFSRDGKALERFLQDYFDGNLKRYLKSEPIPESNDGPV 354
Query: 342 YHLGADNFAST-LRKKKHALVMFYAP 366
+ A+NF + K L+ FYAP
Sbjct: 355 KVVVAENFDEIVNNENKDVLIEFYAP 380
Score = 34.8 bits (79), Expect = 0.045
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 339 SEVYHLGADNFASTLRKKKHA---LVMFYAP 366
S+V L DNF S + A LV F+AP
Sbjct: 1 SDVLELTDDNFESRISDTGSAGLMLVEFFAP 31
Score = 34.4 bits (78), Expect = 0.049
Identities = 16/119 (13%), Positives = 36/119 (30%), Gaps = 22/119 (18%)
Query: 31 LIERLTEKADPVCTREKAKKKVRRQKNAEVKYVYENGN-TKDKIIEFVRNPQATSEEVKK 89
L+ + + + + K + Y T KI +F++
Sbjct: 168 LVNEYDDNGEGII---LFRPSHLTNKFEDKTVAYTEQKMTSGKIKKFIQENI-------- 216
Query: 90 KEQDWADTESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
H+T+DN DL+ + +L+ +Y K + + ++
Sbjct: 217 --------FGICPHMTEDNKDLI--QGKDLLIAYYDVDYEKNAKGSNYWRNRVMMVAKK 265
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold,
sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A
{Trypanosoma brucei} PDB: 3qd9_A*
Length = 470
Score = 83.1 bits (204), Expect = 1e-17
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 88 KKKEQDWADTESEVVHLTDDNFDLVIQEESSV--LVMFYAPWCGHCKKLKPEYEEAAATM 145
+S VV L+ D+F V + +V+FY CG C++ + + A +
Sbjct: 12 GSPRPGLFHLDSSVVDLSGDDFSRVHRVAPLCPWIVLFYNDGCGACRRYASTFSKFAGGL 71
Query: 146 K 146
K
Sbjct: 72 K 72
Score = 47.3 bits (111), Expect = 5e-06
Identities = 12/91 (13%), Positives = 25/91 (27%), Gaps = 2/91 (2%)
Query: 254 KSINSGSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASR 313
+ AAV+ E L +++DI P L +F + +
Sbjct: 69 GGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINFVPRLFFFYPRD--SCRSNEECGTS 126
Query: 314 LVEFMRDPTEPPPPPPPEPAWAEEPSEVYHL 344
+E + E ++ +
Sbjct: 127 SLEHVAFENSHLEVDELESEVRRLVNKHMVV 157
Score = 44.2 bits (103), Expect = 4e-05
Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 326 PPPPPEPAWAEEPSEVYHLGADNFASTLRKKKH--ALVMFYAP 366
P P S V L D+F+ R +V+FY
Sbjct: 10 ATGSPRPGLFHLDSSVVDLSGDDFSRVHRVAPLCPWIVLFYND 52
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain
(residues 33-153), D domain (residues 154-261), CHA;
2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Length = 240
Score = 80.0 bits (197), Expect = 1e-17
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 97 TESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
+ L F VI + VLV F + K + E++ A
Sbjct: 3 HTKGALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEK--QDEFKRLAENSA 50
Score = 45.0 bits (106), Expect = 1e-05
Identities = 14/104 (13%), Positives = 31/104 (29%), Gaps = 13/104 (12%)
Query: 269 ILAAVDVTR-----EKSLGKRF--DIKGFPTLKYFRAGS----VAFDAGHLRDASRLVEF 317
++A V ++ L +++ D + +P FR G V + + +
Sbjct: 56 LVAEVGISDYGDKLNMELSEKYKLDKESYPVFYLFRDGDFENPVPYTGA--VKVGAIQRW 113
Query: 318 MRDPTEPPPPPPPEPAWAEEPSEVYHLGADNFASTLRKKKHALV 361
++ P P + E L K+ +
Sbjct: 114 LKGQGVYLGMPGCLPVYDALAGEFIRASGVEARQALLKQGQDNL 157
Score = 40.0 bits (93), Expect = 7e-04
Identities = 7/28 (25%), Positives = 8/28 (28%)
Query: 339 SEVYHLGADNFASTLRKKKHALVMFYAP 366
L F + K K LV F
Sbjct: 5 KGALPLDTVTFYKVIPKSKFVLVKFDTQ 32
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus
cuniculus} PDB: 1a8y_A 3trq_A* 3trp_A* 3uom_A
Length = 367
Score = 78.9 bits (194), Expect = 2e-16
Identities = 8/59 (13%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 94 WADTESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCK------KLKPEYEEAAATMK 146
D V+++ N+ V ++ + ++++ P + E AA ++
Sbjct: 8 EYDGVDRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLE 66
Score = 61.2 bits (148), Expect = 1e-10
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTEPPP 326
VD ++ ++ K+ + ++ F+ V G A LVEF+ D E P
Sbjct: 72 FGLVDSEKDAAVAKKLGLTEEDSIYVFKEDEVIEYDGE-FSADTLVEFLLDVLEDPV 127
Score = 41.9 bits (98), Expect = 2e-04
Identities = 5/33 (15%), Positives = 16/33 (48%)
Query: 334 WAEEPSEVYHLGADNFASTLRKKKHALVMFYAP 366
+ V ++ A N+ + +K + ++++ P
Sbjct: 8 EYDGVDRVINVNAKNYKNVFKKYEVLALLYHEP 40
Score = 38.8 bits (90), Expect = 0.002
Identities = 10/102 (9%), Positives = 26/102 (25%), Gaps = 18/102 (17%)
Query: 52 VRRQKNAEVKYVYENGNTKDKIIEFVRNPQATSEEVKKKEQDWADTESEVVHLTDDNFDL 111
E + + N++++I+ FV S + L ++
Sbjct: 197 FYEAFMEEPVTIPDKPNSEEEIVNFVE----------------EHRRSTLRKLKPESMYE 240
Query: 112 VIQEE--SSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAY 151
+++ +V F + + A
Sbjct: 241 TWEDDMDGIHIVAFAEEADPDGYEFLEILKSVAQDNTDNPDL 282
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.19A {Yersinia pestis}
Length = 148
Score = 65.1 bits (159), Expect = 5e-13
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 100 EVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
EV++ T + D ++Q++ +++ F+APWCG C+ P + E AA
Sbjct: 39 EVINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERA 85
Score = 26.6 bits (59), Expect = 9.2
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVA 302
V+ E +L RF I+ PT+ +R G +
Sbjct: 90 FVKVNTEAEPALSTRFRIRSIPTIMLYRNGKMI 122
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.25A {Aeropyrum pernix}
Length = 135
Score = 63.3 bits (154), Expect = 1e-12
Identities = 8/55 (14%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 98 ESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYY 152
+ ++++T + F ++ + ++ Y+ C HC + P+ +A+ + +
Sbjct: 15 DGRLIYITPEEFRQLL--QGDAILAVYSKTCPHCHRDWPQLIQASKEVDVPIVMF 67
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB:
2l6d_A
Length = 110
Score = 62.4 bits (152), Expect = 2e-12
Identities = 11/49 (22%), Positives = 21/49 (42%)
Query: 99 SEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQ 147
S + +T + + S +V F+ C HCK ++ ++ A Q
Sbjct: 2 SAIRDITTEAGMAHFEGLSDAIVFFHKNLCPHCKNMEKVLDKFGARAPQ 50
Score = 27.7 bits (62), Expect = 2.8
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAF 303
+++VD L K + PTL + R G VA
Sbjct: 53 ISSVDSEARPELMKELGFERVPTLVFIRDGKVAK 86
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB:
3hhv_A
Length = 104
Score = 61.9 bits (151), Expect = 2e-12
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 101 VVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQ 147
V+HL NFD + +V F+A WC C L P EE A Q
Sbjct: 1 VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ 47
>2yzu_A Thioredoxin; redox protein, electron transport, structural
genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Length = 109
Score = 60.8 bits (148), Expect = 5e-12
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 99 SEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
++ + +TD NFD + + VLV F+A WC C+ + P EE A +
Sbjct: 1 AKPIEVTDQNFDETLGQHPLVLVDFWAEWCAPCRMIAPILEEIAKEYE 48
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics;
1.99A {Desulfitobacterium hafniense dcb-2}
Length = 111
Score = 60.4 bits (147), Expect = 8e-12
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 101 VVHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
+ L + F+ L+ E + LVMF C C+K+ P EE +
Sbjct: 6 LEKLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVLEELRLNYE 52
Score = 26.1 bits (58), Expect = 9.4
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 273 VDVTREKSLGKRFDIKGFPTLKYFRAGSVA 302
VDV EK+L +RF +KG P + YF+ G
Sbjct: 60 VDVEEEKTLFQRFSLKGVPQILYFKDGEYK 89
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure
initiative, structural genomics; 2.30A {Methanosarcina
mazei}
Length = 140
Score = 61.3 bits (149), Expect = 9e-12
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 99 SEVVHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
S ++ D + V + V+VMFY+P C +CK ++P +EE A
Sbjct: 6 SSIIEFEDMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYFEEYAKEYG 54
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural
genomics/proteomics initiative, RSGI; 1.82A {Thermus
thermophilus}
Length = 140
Score = 61.3 bits (149), Expect = 1e-11
Identities = 16/48 (33%), Positives = 21/48 (43%)
Query: 99 SEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
VV + F + LV F+APWCG C+ + P EE A
Sbjct: 33 PWVVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHA 80
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase;
1.90A {Sulfolobus solfataricus}
Length = 109
Score = 60.0 bits (146), Expect = 1e-11
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 101 VVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
+ LT++NFD VI+ VLV +A WC C +P Y++ A K
Sbjct: 6 TLVLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYK 51
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A
{Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB:
1rqm_A 1quw_A 1nw2_A
Length = 105
Score = 58.8 bits (143), Expect = 3e-11
Identities = 20/46 (43%), Positives = 25/46 (54%)
Query: 101 VVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
+ LTD NF IQ + VLV F+A WCG C+ + P EE A
Sbjct: 2 TMTLTDANFQQAIQGDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHA 47
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP:
c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Length = 105
Score = 57.6 bits (140), Expect = 8e-11
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 100 EVVHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
EV + D ++ V++ E V+V F+APWCG CK + P +E A
Sbjct: 1 EVQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYS 48
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized,
dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A
2oe0_A
Length = 114
Score = 57.3 bits (139), Expect = 1e-10
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 97 TESEVVHLTDDN-FDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQ 147
+ + + LT+ F +I++ +++ FYA WCG CK ++P +
Sbjct: 10 SYTSITKLTNLTEFRNLIKQNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD 61
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium
falciparum}
Length = 128
Score = 57.8 bits (140), Expect = 1e-10
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 101 VVHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
+ N V + + +++ F+A WC C E ++
Sbjct: 26 RLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYG 72
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport;
1.60A {Nostoc SP} SCOP: c.47.1.1
Length = 115
Score = 56.9 bits (138), Expect = 2e-10
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 101 VVHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
V+ +TD F+ V++ E VLV F+A WCG C+ + P AA T
Sbjct: 9 VITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYS 55
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP:
c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B*
1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B*
1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T*
2h6x_A ...
Length = 108
Score = 56.5 bits (137), Expect = 2e-10
Identities = 20/48 (41%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 100 EVVHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
+++HLTDD+FD V++ + ++LV F+A WCG CK + P +E A +
Sbjct: 3 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ 50
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP:
c.47.1.1
Length = 124
Score = 56.6 bits (137), Expect = 2e-10
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 95 ADTESEVVHLTDDNFDLVIQEESSVLVM--FYAPWCGHCKKLKPEYEEAAATMK 146
+V + D F +++ V+ + WCG CK + P+YE+ A
Sbjct: 14 EAIVGKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL 67
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
2.90A {Bacillus cereus}
Length = 105
Score = 56.1 bits (136), Expect = 2e-10
Identities = 8/48 (16%), Positives = 14/48 (29%)
Query: 105 TDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYY 152
T + I+E+ VL+ CG C + +
Sbjct: 7 TIEELATYIEEQQLVLLFIKTENCGVCDVMLRKVNYVLENYNYVEKIE 54
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A
{Rhodobacter capsulatus}
Length = 155
Score = 57.5 bits (139), Expect = 2e-10
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 101 VVHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
V D +++ +LV F+APWCG C+++ P+++ AAAT+
Sbjct: 48 KVAGIDPAILARAERDDLPLLVDFWAPWCGPCRQMAPQFQAAAATLA 94
Score = 27.1 bits (60), Expect = 6.2
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVA 302
LA +D ++ R I+G P F G
Sbjct: 99 LAKIDTQAHPAVAGRHRIQGIPAFILFHKGREL 131
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A
{Acetobacter aceti}
Length = 107
Score = 55.8 bits (135), Expect = 4e-10
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 101 VVHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
+ ++D +FD V++ VLV F+A WCG CK + P E
Sbjct: 4 TLAVSDSSFDQDVLKASGLVLVDFWAEWCGPCKMIGPALGEIGKEFA 50
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Length = 106
Score = 55.7 bits (135), Expect = 4e-10
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 101 VVHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
V+ +TD+NF+ V++ + VLV F+APWCG C+ + P EE A +
Sbjct: 3 VIEVTDENFEQEVLKSDKPVLVDFWAPWCGPCRMIAPIIEELAKEYE 49
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule,
electron transport; 1.51A {Streptomyces coelicolor}
Length = 112
Score = 55.8 bits (135), Expect = 4e-10
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 101 VVHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
+ H+TDD+F+ V++ + VLV F+A WCG C+++ P E AA
Sbjct: 7 LKHVTDDSFEQDVLKNDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYG 53
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project protein structural and
functional analyses; 2.30A {Aquifex aeolicus} PDB:
2ayt_A
Length = 229
Score = 58.5 bits (141), Expect = 4e-10
Identities = 27/229 (11%), Positives = 55/229 (24%), Gaps = 33/229 (14%)
Query: 107 DNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNV 166
+ +E S+ + A C C+ + +E + + +
Sbjct: 13 ELAQKEFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEA----------VGQDKIKL 62
Query: 167 AVVSSLRNKNGEPTTHPSGTPQT-----SDTPRTQCCHPAAHSPASPIRQTPHPEPHRP- 220
+ S +K P D PA + I H +P
Sbjct: 63 DIYSPFTHKEETEKYGVDRVPTIVIEGDKDYGIRYIGLPAGLEFTTLINGIFHVSQRKPQ 122
Query: 221 ----VRSLLLLLLGSYWRPESVGRGWEL--RQVGTGKRIKSINSGSFSPRQITGILAAVD 274
LL ++ V N +D
Sbjct: 123 LSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALANDYI--------TSKVID 174
Query: 275 VTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTE 323
+ + L ++F + G P + G F + + + ++ E
Sbjct: 175 ASENQDLAEQFQVVGVPKI-VINKGVAEFVGA--QPENAFLGYIMAVYE 220
Score = 40.0 bits (93), Expect = 5e-04
Identities = 7/68 (10%), Positives = 13/68 (19%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTEPPPPPP 329
L K +++ + PT+ L + P
Sbjct: 62 LDIYSPFTHKEETEKYGVDRVPTIVIEGDKDYGIRYIGLPAGLEFTTLINGIFHVSQRKP 121
Query: 330 PEPAWAEE 337
E
Sbjct: 122 QLSEKTLE 129
Score = 32.3 bits (73), Expect = 0.17
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 3/75 (4%)
Query: 70 KDKIIEFVRNPQATSEEVKKKEQDWADTESEVVHLTDDNFDLVIQ-EESSVLVMFYAPWC 128
KD I ++ P E L++ +L+ + + +F C
Sbjct: 91 KDYGIRYIGLPAG--LEFTTLINGIFHVSQRKPQLSEKTLELLQVVDIPIEIWVFVTTSC 148
Query: 129 GHCKKLKPEYEEAAA 143
G+C + A
Sbjct: 149 GYCPSAAVMAWDFAL 163
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic
thioredoxin, oxidoreductase; NMR {Chlamydomonas
reinhardtii} SCOP: c.47.1.1
Length = 107
Score = 55.3 bits (134), Expect = 4e-10
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 100 EVVHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
E + DD F +V++ VLV F+APWCG C+ + P +E A K
Sbjct: 2 EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYK 49
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex,
iron-sulfur, electron transport; 1.65A {Spinacia
oleracea} PDB: 2pvo_C 1f9m_A
Length = 111
Score = 55.4 bits (134), Expect = 5e-10
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 99 SEVVHLTDDNFDLVIQEESSVLVM--FYAPWCGHCKKLKPEYEEAAATMK 146
+V + D F +++ V+ + WCG K + P+YE+ A
Sbjct: 5 GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL 54
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A
{Escherichia coli}
Length = 128
Score = 55.5 bits (134), Expect = 6e-10
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 100 EVVHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
+++HLTDD+FD V++ + ++LV F+A WCG K + P +E A +
Sbjct: 23 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPAKMIAPILDEIADEYQ 70
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31
protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 137
Score = 55.6 bits (134), Expect = 7e-10
Identities = 9/55 (16%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 94 WADTESEVVHLTDDNFDLVIQEES--SVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
+ + + + D D ++ + + +V F+A W C+ P Y + +
Sbjct: 2 SSGSSGYIKYFNDKTIDEELERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYN 56
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A
{Trypanosoma} SCOP: c.47.1.1
Length = 125
Score = 55.5 bits (134), Expect = 8e-10
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 95 ADTESEVVHLTD-DNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQ 147
VV + + F ++ E+ + F A WCG CK ++ E+ A
Sbjct: 15 RARYPSVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPT 68
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A
{Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A
2l59_A
Length = 121
Score = 54.7 bits (132), Expect = 1e-09
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 99 SEVVHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
S + +TD +F V+ VLV F+A WCG CK + P EE A
Sbjct: 12 SATIKVTDASFATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERA 60
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox
enzymology, oxidoreductase, redox-active center,
transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A
2o85_A 2o89_A 2o87_A
Length = 106
Score = 53.9 bits (130), Expect = 2e-09
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 101 VVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
+V +TD +FD + E LV F+A CG CK + P EE AA +
Sbjct: 5 IVKVTDADFDSKV-ESGVQLVDFWATACGPCKMIAPVLEELAADYE 49
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative
splicing, FBP interacting repressor, RRM, electron
transport; 2.20A {Escherichia coli O157}
Length = 222
Score = 56.4 bits (136), Expect = 2e-09
Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 101 VVHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
++HLTDD+FD V++ + ++LV F+A WCG CK + P +E A +
Sbjct: 14 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ 60
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis}
PDB: 3hyp_A
Length = 141
Score = 54.5 bits (131), Expect = 2e-09
Identities = 17/81 (20%), Positives = 24/81 (29%), Gaps = 12/81 (14%)
Query: 78 RNPQATSEEVKKKEQDWADTESEVVHLTDDNFD------------LVIQEESSVLVMFYA 125
+ +S +HLT F + +V FYA
Sbjct: 1 KGTSENKSTTATDTVQAEKPQSGTIHLTRAEFLKKIADYENHSKEWKYLGDKPAIVDFYA 60
Query: 126 PWCGHCKKLKPEYEEAAATMK 146
WCG CK + P EE +
Sbjct: 61 DWCGPCKMVAPILEELSKEYA 81
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A
{Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Length = 117
Score = 53.5 bits (129), Expect = 3e-09
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 99 SEVVHLTDD-NFDLVIQEESSVLVM--FYAPWCGHCKKLKPEYEEAAATMK 146
SE++ L D + + ++++ + LV+ F+A WCG CK + P ++E +
Sbjct: 13 SELIELKQDGDLESLLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKYD 63
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm,
deoxyribonucleotide synthesis, golgi apparatus,
membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB:
3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Length = 109
Score = 53.1 bits (128), Expect = 3e-09
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 101 VVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQ 147
T FD I ++ V+V FYA WCG CK + P E+ + Q
Sbjct: 9 TQFKTASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ 55
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion,
electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB:
1uvz_A 1w89_A
Length = 119
Score = 52.7 bits (127), Expect = 5e-09
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 96 DTESEVVHLTDD-NFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
S ++ D +F V+ E+ V+V F+A WCG CK L P E+ A
Sbjct: 9 HHGSTTFNIQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQH 61
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE,
fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Length = 121
Score = 52.7 bits (127), Expect = 6e-09
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 101 VVHLTDDN-FDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRA 150
V ++ + F V + V++ F+A WCG CK + P +E+ + T +
Sbjct: 17 VQVISSYDQFKQVTGGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDKV 67
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure
initiative structural genomics of pathogenic protozoa
consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Length = 112
Score = 51.9 bits (125), Expect = 7e-09
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 101 VVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQ 147
+ + FD +I + V+V F+A WCG CK++ P YEE + T +
Sbjct: 11 KIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK 57
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat,
lysine dimethylation, protein binding; HET: MLY; 1.80A
{Escherichia coli} PDB: 3qdn_A*
Length = 287
Score = 54.8 bits (132), Expect = 9e-09
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 97 TESEVVHLTDDNFDLVIQE--ESSVLVMFYAPWCGHCKKLKPEYEEAAA 143
+ +V++ + N V+++ + VL F++ HC +L P E AA
Sbjct: 5 SVENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPILESLAA 53
Score = 29.0 bits (65), Expect = 2.4
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 269 ILAAVDVTREKSLGKRFDIKGFPTLKYFRAG 299
ILA +D E+ + +F ++ PT+ F+ G
Sbjct: 60 ILAKLDCDAEQMIAAQFGLRAIPTVYLFQNG 90
>2l57_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, PSI protein structure initiative; NMR
{Clostridium perfringens}
Length = 126
Score = 51.7 bits (124), Expect = 1e-08
Identities = 6/54 (11%), Positives = 18/54 (33%)
Query: 95 ADTESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
+ + +E ++MF C +C +++ E + + +
Sbjct: 5 GIKQINFQSINVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREGK 58
Score = 26.7 bits (59), Expect = 7.3
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 273 VDVTREKSLGKRFDIKGFPTLKYF 296
++ + L ++D PT +
Sbjct: 66 LEEEKNIDLAYKYDANIVPTTVFL 89
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP:
c.47.1.1
Length = 113
Score = 51.2 bits (123), Expect = 2e-08
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 98 ESEVVHL-----TDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQ 147
E +V+ ++F+ + ++V F A WC CK + P + E A
Sbjct: 3 EGQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN 57
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport,
redox-active center; 1.50A {Bacillus subtilis} PDB:
2ipa_A 2gzy_A 2gzz_A
Length = 112
Score = 51.1 bits (123), Expect = 2e-08
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 101 VVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
+V TD +F E VL F+APWCG K + P EE M
Sbjct: 3 IVKATDQSFSAETSEGV-VLADFWAPWCGPSKMIAPVLEELDQEMG 47
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Length = 153
Score = 51.8 bits (124), Expect = 2e-08
Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 97 TESEVVHLTDD-NFDLVIQEESSVLVM--FYAPWCGHCKKLKPEYEEAAATMKQ 147
+ V + F+ +++ ++ L++ F+APW C ++ E A + Q
Sbjct: 10 AVAAVEEVGSAGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQ 63
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola
hepatica}
Length = 104
Score = 50.7 bits (122), Expect = 2e-08
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 105 TDDNFDLVIQEESSVLVM--FYAPWCGHCKKLKPEYEEAAATMKQ 147
T + + +I E L++ F+A WCG C+ + P+ E A + +
Sbjct: 6 TAADLEKLINENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIPE 50
Score = 26.1 bits (58), Expect = 8.3
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 273 VDVTREKSLGKRFDIKGFPTLKYFRAGSV 301
VDV + + ++ + PT + + G
Sbjct: 56 VDVDQNEEAAAKYSVTAMPTFVFIKDGKE 84
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase,
structural genomics consortium, SGC; 2.00A {Plasmodium
falciparum}
Length = 133
Score = 51.3 bits (123), Expect = 2e-08
Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 89 KKEQDWADTESEVVHLTDDN-FDLVIQEESSVLVM--FYAPWCGHCKKLKPEYEEAA 142
+E + +S + L + + V + ++ F A WC C K+K ++
Sbjct: 10 GRENLYFQGQSIYIELKNTGSLNQVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQL 66
Score = 26.3 bits (58), Expect = 9.5
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 273 VDVTREKSLGKRFDIKGFPTLKYFRAG 299
+DV L + +IK PT +++
Sbjct: 76 IDVDIHPKLNDQHNIKALPTFEFYFNL 102
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine
nucleotide disulfide oxidoreductase, electron TRAN
oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB:
3qfb_C*
Length = 116
Score = 50.4 bits (121), Expect = 3e-08
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Query: 98 ESEVVHLTDDN-FDLVIQEESSVLVM--FYAPWCGHCKKLKPEYEEAAATMKQ 147
V + F + LV+ F A WCG K +KP + +
Sbjct: 10 HGSVKQIESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN 62
Score = 26.5 bits (59), Expect = 6.2
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 273 VDVTREKSLGKRFDIKGFPTLKYFRAGSV 301
VDV + + ++K PT ++F+ G
Sbjct: 68 VDVDDCQDVASECEVKSMPTFQFFKKGQK 96
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2,
protein STRU initiative; NMR {Bacteroides vulgatus}
Length = 136
Score = 50.9 bits (122), Expect = 3e-08
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 12/59 (20%)
Query: 100 EVVHLTDDNFD------------LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
+V+HLT F + + +V FYA WCG CK + P +E A
Sbjct: 10 KVIHLTKAEFLAKVYNFEKNPEEWKYEGDKPAIVDFYADWCGPCKMVAPILDELAKEYD 68
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein
disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum
vulgare var} PDB: 2vm2_A
Length = 118
Score = 50.4 bits (121), Expect = 4e-08
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 95 ADTESEVVHL-TDDNFDLVIQEESS----VLVMFYAPWCGHCKKLKPEYEEAAATMKQ 147
A E V+ T FD + V++ F A WCG C+ + P + E A
Sbjct: 2 AAEEGAVIACHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPVFAEYAKKFPG 59
Score = 26.5 bits (59), Expect = 6.9
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 273 VDVTREKSLGKRFDIKGFPTLKYFRAGSV 301
VDV K + + ++++ PT + + G
Sbjct: 65 VDVDELKDVAEAYNVEAMPTFLFIKDGEK 93
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Length = 118
Score = 50.5 bits (121), Expect = 4e-08
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 101 VVHL--TDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQ 147
+VH T + + + VLV F+A WCG C++L A K
Sbjct: 5 IVHFNGTHEALLNRIKEAPGLVLVDFFATWCGPCQRLGQILPSIAEANKD 54
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich,
unknown function; 2.70A {Homo sapiens}
Length = 118
Score = 50.1 bits (120), Expect = 4e-08
Identities = 5/51 (9%), Positives = 15/51 (29%), Gaps = 3/51 (5%)
Query: 100 EVVHLTDDNFDLVIQEESS---VLVMFYAPWCGHCKKLKPEYEEAAATMKQ 147
E+ ++ + + + V++ Y C + A +
Sbjct: 4 ELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPE 54
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron
transport; 2.20A {Drosophila melanogaster} SCOP:
c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Length = 106
Score = 49.6 bits (119), Expect = 5e-08
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 105 TDDNFDLVIQEESSVLVM--FYAPWCGHCKKLKPEYEEAAATMKQQ 148
+ D + + S LV+ F+A WCG CK + P+ E +
Sbjct: 7 DKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN 52
Score = 26.1 bits (58), Expect = 7.3
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 273 VDVTREKSLGKRFDIKGFPTLKYFRAGSV 301
VDV + + ++I PT + + G
Sbjct: 58 VDVDECEDIAMEYNISSMPTFVFLKNGVK 86
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase,
thioredoxin-fold, protein disulfide reductase; 1.70A
{Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Length = 122
Score = 49.7 bits (119), Expect = 7e-08
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 95 ADTESEVVHL-TDDNFDLVIQEESS----VLVMFYAPWCGHCKKLKPEYEEAAATMKQ 147
A +EV+ + + + + + I+E ++ V++ F A WCG C+ + P + + A
Sbjct: 8 AAVAAEVISVHSLEQWTMQIEEANTAKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN 65
Score = 26.2 bits (58), Expect = 9.6
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 273 VDVTREKSLGKRFDIKGFPTLKYFRAGSV 301
VDV K + ++F ++ PT + + G V
Sbjct: 71 VDVDELKPIAEQFSVEAMPTFLFMKEGDV 99
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich,
structural genomics, PSI, protein structure initiative;
HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP:
c.47.1.1
Length = 118
Score = 49.2 bits (117), Expect = 8e-08
Identities = 12/93 (12%), Positives = 29/93 (31%), Gaps = 6/93 (6%)
Query: 89 KKEQDWADTESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
+ + D ++ T + ++ + C +C+K A K
Sbjct: 2 NAMEQFLDNIKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAH 61
Query: 149 RAYYGMGMLRHRPQASNVAVVSSLRNKNGEPTT 181
+ + S + + + R++ G PT
Sbjct: 62 IYFINSE------EPSQLNDLQAFRSRYGIPTV 88
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A
2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A
1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A*
1cqg_A 1cqh_A 1mdi_A ...
Length = 105
Score = 48.8 bits (117), Expect = 9e-08
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 101 VVHLTDDN-FDLVIQEESSVLVM--FYAPWCGHCKKLKPEYEEAAATMKQ 147
V + F + LV+ F A WCG CK +KP + +
Sbjct: 2 VKQIESKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN 51
Score = 26.9 bits (60), Expect = 5.2
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 273 VDVTREKSLGKRFDIKGFPTLKYFRAGSV 301
VDV + + ++K PT ++F+ G
Sbjct: 57 VDVDDCQDVASESEVKSMPTFQFFKKGQK 85
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport;
2.22A {Homo sapiens} SCOP: c.47.1.1
Length = 107
Score = 48.8 bits (117), Expect = 9e-08
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 105 TDDNFDLVIQEESSVLVM--FYAPWCGHCKKLKPEYEEAAATMKQ 147
+D +F + S L + F CG C ++ P + + Q
Sbjct: 8 SDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ 52
Score = 26.5 bits (59), Expect = 6.1
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 273 VDVTREKSLGKRFDIKGFPTLKYFRAGSV 301
VDV + + +I PT ++FR
Sbjct: 58 VDVHQCQGTAATNNISATPTFQFFRNKVR 86
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome
research, oxidoreductase; NMR {Oryza sativa}
Length = 130
Score = 49.3 bits (118), Expect = 1e-07
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 5/63 (7%)
Query: 90 KEQDWADTESEVVHL-TDDNFDLVIQEESS----VLVMFYAPWCGHCKKLKPEYEEAAAT 144
E+ A E V+ D FD + + V++ F A WCG C+ + P + E A
Sbjct: 5 AEEGMAAEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKK 64
Query: 145 MKQ 147
Sbjct: 65 FPG 67
Score = 26.2 bits (58), Expect = 9.9
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 273 VDVTREKSLGKRFDIKGFPTLKYFRAGSV 301
VDV K + ++++++ PT + + G+
Sbjct: 73 VDVDELKEVAEKYNVEAMPTFLFIKDGAE 101
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein
disulfide isomerase, PIPE, dorsal-ventral patterning,
chaperone, WIND mutants; 1.75A {Drosophila melanogaster}
SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Length = 248
Score = 51.2 bits (122), Expect = 1e-07
Identities = 6/51 (11%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 94 WADTESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAAT 144
+ T + V L + +F+ ++ +V F + + + +
Sbjct: 11 GSVTCTGCVDLDELSFEKTVERFPYSVVKFDIASP--YGEKHEAFTAFSKS 59
Score = 37.7 bits (87), Expect = 0.003
Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 10/62 (16%)
Query: 269 ILAAVDVTRE-----KSLGKRFDI--KGFPTLKYFRAGS---VAFDAGHLRDASRLVEFM 318
++A V V K+LG R+ + K FP++ F+ + V + L F+
Sbjct: 68 LIATVGVKDYGELENKALGDRYKVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFV 127
Query: 319 RD 320
Sbjct: 128 SA 129
Score = 32.7 bits (74), Expect = 0.12
Identities = 5/34 (14%), Positives = 13/34 (38%)
Query: 333 AWAEEPSEVYHLGADNFASTLRKKKHALVMFYAP 366
+ + L +F T+ + +++V F
Sbjct: 10 HGSVTCTGCVDLDELSFEKTVERFPYSVVKFDIA 43
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy,
IGE, conformational diversity, multispecficity,
redox-active center; 2.77A {Escherichia coli} SCOP:
c.47.1.1
Length = 123
Score = 48.6 bits (116), Expect = 1e-07
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 15/61 (24%)
Query: 101 VVHLTDDNFD-LVIQEESSVLVMFYAPWCG--------------HCKKLKPEYEEAAATM 145
++HLTDD+FD V++ + ++LV F+A WCG CK + P +E A
Sbjct: 5 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEY 64
Query: 146 K 146
+
Sbjct: 65 Q 65
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure
initiative, CESG, center for eukaryotic structural
genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Length = 124
Score = 48.5 bits (116), Expect = 2e-07
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 95 ADTESEVVHL-TDDNFDLVIQEESS----VLVMFYAPWCGHCKKLKPEYEEAAATMKQ 147
A E +V+ T + ++ +Q+ + V+V F A WCG C+ + P + + A +
Sbjct: 12 ASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN 69
Score = 26.2 bits (58), Expect = 8.5
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 273 VDVTREKSLGKRFDIKGFPTLKYFRAGSV 301
VD KS+ + I+ PT + + G +
Sbjct: 75 VDTDELKSVASDWAIQAMPTFMFLKEGKI 103
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein,
thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 135
Score = 48.7 bits (116), Expect = 2e-07
Identities = 5/51 (9%), Positives = 15/51 (29%), Gaps = 3/51 (5%)
Query: 100 EVVHLTDDNFDLVIQEESS---VLVMFYAPWCGHCKKLKPEYEEAAATMKQ 147
E+ ++ + + + V++ Y C + A +
Sbjct: 11 ELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPE 61
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2,
protein structure initiative; NMR {Bacteroides
thetaiotaomicron}
Length = 130
Score = 48.2 bits (115), Expect = 3e-07
Identities = 9/57 (15%), Positives = 20/57 (35%), Gaps = 7/57 (12%)
Query: 99 SEVVHLTDDNFDLVIQEESS----VLVMFYAPWCGHCKKLKPE---YEEAAATMKQQ 148
++ + + +F ++ + V + WCG CK+L A +
Sbjct: 6 ADGIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRH 62
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi;
structural genomics, PSI, protein structure initiative;
2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB:
2gzp_A 2jzt_A
Length = 142
Score = 48.3 bits (115), Expect = 3e-07
Identities = 5/50 (10%), Positives = 9/50 (18%), Gaps = 2/50 (4%)
Query: 103 HLTDDNFDLVIQEESS--VLVMFYAPWCGHCKKLKPEYEEAAATMKQQRA 150
+ D I+ +L+ E Q
Sbjct: 21 PVEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDW 70
Score = 36.7 bits (85), Expect = 0.003
Identities = 13/63 (20%), Positives = 26/63 (41%)
Query: 271 AAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTEPPPPPPP 330
A D+ + +++G RF+++ FP F G + + + L+ MR + P
Sbjct: 73 AVADLEQSEAIGDRFNVRRFPATLVFTDGKLRGALSGIHPWAELLTLMRSIVDTPAAQET 132
Query: 331 EPA 333
Sbjct: 133 VQL 135
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas
reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Length = 112
Score = 46.9 bits (112), Expect = 5e-07
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 101 VVHLTDDNFDLVIQEESS----VLVMFYAPWCGHCKKLKPEYEEAAATMK 146
+V + +D + + ++V F A WCG CK + P +E +
Sbjct: 5 IVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYA 54
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm,
redox-active center, transport, oxidoreductase; 1.60A
{Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Length = 139
Score = 47.5 bits (113), Expect = 5e-07
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 97 TESEVVHL-TDDNFDLVIQEESS----VLVMFYAPWCGHCKKLKPEYEEAAATMKQ 147
V + T + +D + E S VL F A WCG +++ P Y E +
Sbjct: 22 AGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYPS 77
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport,
redox- active center, transport, oxidoreductase; HET:
CME; 1.50A {Saccharomyces cerevisiae}
Length = 112
Score = 46.2 bits (110), Expect = 9e-07
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 101 VVHLTD-DNFDLVIQEESS---VLVMFYAPWCGHCKKLKPEYEEAAATMK 146
V+ + D + F + + +++ F+ W CK LK +E +
Sbjct: 2 VIEINDQEQFTYLTTTAAGDKLIVLYFHTSWAEPCKALKQVFEAISNEPS 51
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain,
endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Length = 210
Score = 47.2 bits (112), Expect = 2e-06
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 96 DTESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMG 155
D + E++ L FD + V FY+P C HC L P + E A + +G
Sbjct: 94 DDDPEIITLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVD---GLLRIG 150
Score = 33.7 bits (77), Expect = 0.056
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRD 320
+ AV+ ++ L + + +P+L FR+G A R LV F
Sbjct: 149 IGAVNCGDDRMLCRMKGVNSYPSLFIFRSGMAAVKYNGDRSKESLVAFAMQ 199
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell
cycle, mRNA processing, mRNA splicing, nucleus,
phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens}
PDB: 1xbs_A
Length = 149
Score = 46.1 bits (109), Expect = 2e-06
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 103 HL-TDDNFDLVIQ--EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYY 152
L + D I+ E +++ F C +L + ++ + + A Y
Sbjct: 7 KLTSKKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKMAAIY 59
Score = 28.4 bits (63), Expect = 2.6
Identities = 11/55 (20%), Positives = 20/55 (36%)
Query: 269 ILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTE 323
+ VDV + + FDI P+ +F G D ++ V + +
Sbjct: 57 AIYLVDVDQTAVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQD 111
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19,
structural genomics, PSI, protein structure initiative;
1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Length = 164
Score = 45.4 bits (107), Expect = 5e-06
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 106 DDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQR 149
+D ++V+ + WCG CK LKP++ E+ +
Sbjct: 36 EDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELSH 79
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.47.1.1
Length = 85
Score = 43.4 bits (103), Expect = 5e-06
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMK 146
+ +F +P C +C +EA
Sbjct: 4 NIEVFTSPTCPYCPMAIEVVDEAKKEFG 31
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC
structure funded by NIH, protein structure initiative,
PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Length = 85
Score = 43.0 bits (102), Expect = 6e-06
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMK 146
+ +F +P C HC K EE A M
Sbjct: 5 KIELFTSPMCPHCPAAKRVVEEVANEMP 32
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.8 bits (110), Expect = 9e-06
Identities = 43/316 (13%), Positives = 81/316 (25%), Gaps = 88/316 (27%)
Query: 58 AEVKYVYENGNTKDKIIEFVRNPQATSEEVKKKEQDWADTESEVVH-LTDDNFDLVIQEE 116
E +Y Y KD + F E+ D D + L+ + D +I +
Sbjct: 12 GEHQYQY-----KDILSVF--------EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK 58
Query: 117 SSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKN 176
+V W K + ++ + + Y ++S ++ +
Sbjct: 59 DAVSGTLRLFWT-LLSKQEEMVQKFVEEVLRIN--YKF-------------LMSPIKTEQ 102
Query: 177 GEPTTHPSGTPQTSDTPRTQCCHPAAHSPASPI--RQTPHPEPHRPVRSLLLLLLGSYWR 234
+P+ T ++ +P+ +R LL L R
Sbjct: 103 RQPSM---------MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL-----R 148
Query: 235 PES----VGRGWELRQVGTGKRIKSINSGSFSPRQITGILAAVDVTREKSLGKRFDIKGF 290
P G G+GK +A DV + + D K F
Sbjct: 149 PAKNVLIDGVL------GSGKT----------------WVAL-DVCLSYKVQCKMDFKIF 185
Query: 291 PTLKYFRAGSVAFDAGHLRDASRL-VEFMRDPTEPPPPPPPEPAWAEEPSEVYHLGADNF 349
+ + L +L + + T
Sbjct: 186 ----WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS-------IQAEL 234
Query: 350 ASTLRKKKHA---LVM 362
L+ K + LV+
Sbjct: 235 RRLLKSKPYENCLLVL 250
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 43.2 bits (102), Expect = 2e-05
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 105 TDDNFDLVIQEESS--VLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAY 151
T D + + E V++ YA WC CK+ + K
Sbjct: 18 TVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADT 66
Score = 31.7 bits (72), Expect = 0.13
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 10/50 (20%)
Query: 273 VDVTRE----KSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFM 318
+VT +L K ++ G PT+ +F G +R+ FM
Sbjct: 71 ANVTANDAQDVALLKHLNVLGLPTILFFDG------QGQEHPQARVTGFM 114
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold,
structural genomics, PSI-2, protein structu initiative;
2.00A {Bacteroides fragilis}
Length = 142
Score = 41.6 bits (98), Expect = 6e-05
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQ 147
++ FY P C +C+K + + E A ++
Sbjct: 30 TMLFFYDPDCSNCRKFEKLFAEIPAFVEM 58
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD,
structural genomics, protein structure initiative; 1.80A
{Rhodopseudomonas palustris}
Length = 137
Score = 40.8 bits (95), Expect = 1e-04
Identities = 11/64 (17%), Positives = 19/64 (29%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTEPPPPPP 329
A V E+ L RF + P+L + ++D S + + P
Sbjct: 70 AAEVAAEAERGLMARFGVAVCPSLAVVQPERTLGVIAKIQDWSSYLAQIGAMLAEVDQPG 129
Query: 330 PEPA 333
Sbjct: 130 EAEL 133
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural
genomics, protein S initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Bacteroides
fragilis}
Length = 142
Score = 40.0 bits (94), Expect = 2e-04
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEA 141
L+ P C C ++ + +
Sbjct: 34 TLLFINNPGCHACAEMIEGLKAS 56
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga
hutchinsoni structural genomics, PSI-2, protein
structure initiative; 1.88A {Cytophaga hutchinsonii}
Length = 148
Score = 40.0 bits (94), Expect = 3e-04
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
++ F+ CGHC++ P+ + + +
Sbjct: 34 TILFFWDSQCGHCQQETPKLYDWWLKNRAK 63
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide
formation, redox partner, oxidoreductase; 1.66A
{Synechococcus SP}
Length = 106
Score = 38.9 bits (90), Expect = 3e-04
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 105 TDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMK 146
+ L M+ A WC HC+ K + A +
Sbjct: 1 SPLAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP 42
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics
research consortium, oxidoreductase; NMR {Thermus
thermophilus}
Length = 130
Score = 38.1 bits (89), Expect = 8e-04
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 119 VLVMFYAPWCGHCKKLKPE 137
V+V F++ C +C+++
Sbjct: 22 VMVYFHSEHCPYCQQMNTF 40
Score = 33.1 bits (76), Expect = 0.046
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 9/51 (17%)
Query: 272 AVDVTRE----KSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFM 318
V+ + + L +R+ + G PT + AG + RL
Sbjct: 57 VASVSVDTPEGQELARRYRVPGTPTFVFLVP-----KAGAWEEVGRLFGSR 102
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase
subunit OST6; oxidoreductase, active site loop, redox
state, membrane; HET: PG4; 1.30A {Saccharomyces
cerevisiae} PDB: 3g7y_A 3g9b_A*
Length = 178
Score = 38.8 bits (90), Expect = 0.001
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 10/79 (12%)
Query: 82 ATSEEVKKKEQDWADTESEVVHLTDDNFDLVIQ--EESSVLVMFYAPW-------CGHCK 132
AT+ D V+ +T DN+ L+ + ++ C C
Sbjct: 2 ATASHNIDDILQLKDDTG-VITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCH 60
Query: 133 KLKPEYEEAAATMKQQRAY 151
+ Y A ++ Q
Sbjct: 61 DFEKTYHAVADVIRSQAPQ 79
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein
disulfide isomerase, endoplasmic R isomerase; 1.83A
{Homo sapiens}
Length = 151
Score = 38.1 bits (88), Expect = 0.001
Identities = 4/34 (11%), Positives = 15/34 (44%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYY 152
++V+ + C + + LK + + + + +
Sbjct: 47 LMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKF 80
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; 2.70A
{Shigella flexneri 2A} PDB: 2hfd_A
Length = 140
Score = 37.7 bits (87), Expect = 0.001
Identities = 14/61 (22%), Positives = 24/61 (39%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTEPPPPPP 329
+A D+ + +++G RF FP F G+ + + L+ MR EP
Sbjct: 72 VAIADLEQSEAIGDRFGAFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQQERA 131
Query: 330 P 330
Sbjct: 132 S 132
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A
{Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB:
1j08_A
Length = 226
Score = 38.5 bits (89), Expect = 0.002
Identities = 21/139 (15%), Positives = 44/139 (31%), Gaps = 16/139 (11%)
Query: 12 EDTSPLAKEIVKPKAITLGLIERLTEKADPVCTREKAKKKVRRQKNAEVKYVYE------ 65
+D + L++ L+E D + ++ A+ +
Sbjct: 32 KDHCQYCDQ-------LKQLVQELSELTDKLSYEIVDFDTPEGKELAKRYRIDRAPATTI 84
Query: 66 NGNTKDKIIEFVRNPQATSEEVKKKEQDWADTESEVVHLTDDNFDLVIQEESSV-LVMFY 124
+ KD + + P E +D D E +L D+ + + V +++F
Sbjct: 85 TQDGKDFGVRYFGLPAG--HEFAAFLEDIVDVSREETNLMDETKQAIRNIDQDVRILVFV 142
Query: 125 APWCGHCKKLKPEYEEAAA 143
P C +C + A
Sbjct: 143 TPTCPYCPLAVRMAHKFAI 161
Score = 28.1 bits (62), Expect = 4.2
Identities = 4/51 (7%), Positives = 13/51 (25%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRD 320
V+ ++++ P + G + +E +
Sbjct: 173 GDMVEAIEYPEWADQYNVMAVPKIVIQVNGEDRVEFEGAYPEKMFLEKLLS 223
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul
structural genomics, PSI-2, protein structure
initiative; 1.30A {Xylella fastidiosa}
Length = 133
Score = 36.0 bits (83), Expect = 0.005
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAY 151
L++F A WC C+ L T + +
Sbjct: 32 TLLVFGANWCTDCRALDKSLRNQKNTALIAKHF 64
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase,
sulfur oxidation, thiol- disulfide oxidoreductase; HET:
MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Length = 116
Score = 35.0 bits (80), Expect = 0.007
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 118 SVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAY 151
L+MF P C +C + E + RA
Sbjct: 20 LRLLMFEQPGCLYCARWDAEIAPQYPLTDEGRAA 53
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB:
1b9y_C 1b9x_C
Length = 245
Score = 36.2 bits (83), Expect = 0.010
Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 6/115 (5%)
Query: 33 ERLTEKADPVCTREKAKKKVRRQKNAEVKYVYENGNTKDKIIEFVRNPQATSEEVKKKEQ 92
E L + + P +K K+ R YE + + +R + + ++
Sbjct: 48 EILRQMSSPQSRDDKDSKE--RFSRKMSVQEYELIHKDKEDENCLRKYRRQCMQDMHQKL 105
Query: 93 DWADTESEVVHLTD-DNFDLVIQEESS---VLVMFYAPWCGHCKKLKPEYEEAAA 143
+ V L + F I++E ++V Y C L AA
Sbjct: 106 SFGPRYGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALNSSLICLAA 160
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.017
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 18/71 (25%)
Query: 291 PTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTEPPPPPPPEPAWAEEPSEVYHLGAD--N 348
PT +F A S L++ +F + P P A +EP+ L
Sbjct: 23 PTASFFIA-SQ------LQE-----QFNKIL----PEPTEGFAADDEPTTPAELVGKFLG 66
Query: 349 FASTLRKKKHA 359
+ S+L +
Sbjct: 67 YVSSLVEPSKV 77
Score = 33.1 bits (75), Expect = 0.19
Identities = 31/207 (14%), Positives = 54/207 (26%), Gaps = 78/207 (37%)
Query: 194 RTQCCHPAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPESVGRGWELRQVGTGKRI 253
R +P P S + + P S +L S+ QV +
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVP--SPML----------SI-SNLTQEQV--QDYV 353
Query: 254 KSINSGSF-----------SPRQ--ITG---ILAAVDVT-------------------RE 278
NS + ++G L +++T R+
Sbjct: 354 NKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK 413
Query: 279 KSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLV--EFMRDPTEPPPPPPPEPAWAE 336
RF P + F + L AS L+ + +++ P
Sbjct: 414 LKFSNRFL----PV-------ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP---- 458
Query: 337 EPSEVYHL--GADNFASTLRKKKHALV 361
VY G+D LR ++
Sbjct: 459 ----VYDTFDGSD-----LRVLSGSIS 476
Score = 31.2 bits (70), Expect = 0.78
Identities = 26/171 (15%), Positives = 44/171 (25%), Gaps = 57/171 (33%)
Query: 13 DTSPLAKEIVKPKAITLGLIERLTEKADPVCTREK----AKKKVRRQKNAEVKYVYENGN 68
TS A+++ +AD ++ V N ++ G
Sbjct: 1637 KTSKAAQDVW--------------NRAD-NHFKDTYGFSILDIVI--NNPVNLTIHFGGE 1679
Query: 69 TKDKIIEFVRNPQATSEEVKKKEQDWADTESEVVHLTDDNFDLVIQEESSVLVMFYAPWC 128
+I E N A E ++E + F + E S F +
Sbjct: 1680 KGKRIRE---NYSAMIFETIVD----GKLKTEKI------FKEI--NEHSTSYTFRSE-- 1722
Query: 129 GHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSSLRNKNGEP 179
+AT Q A + A L++K P
Sbjct: 1723 ---------KGLLSATQFTQPA-----LT-----LMEKAAFEDLKSKGLIP 1754
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation,
blood coagulation, oxidoreduc blood
coagulation,oxidoreductase; HET: U10; 3.60A
{Synechococcus SP}
Length = 291
Score = 35.8 bits (81), Expect = 0.017
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 120 LVMFYAPWCGHCKKLKPEYEEAAATM 145
M+ A WC HC+ K + A +
Sbjct: 201 GTMYGAYWCPHCQDQKELFGAAFDQV 226
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2,
structure initiative, midwest center for structural
genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Length = 148
Score = 32.7 bits (75), Expect = 0.068
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQR 149
+L+ F+A WC + E + K+ +
Sbjct: 36 LLLNFWASWCDPQPEANAELKRLNKEYKKNK 66
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW
YORK structural G research consortium, nysgrc,
PSI-biology; NMR {Bacteroides vulgatus}
Length = 152
Score = 32.3 bits (74), Expect = 0.090
Identities = 5/30 (16%), Positives = 6/30 (20%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
VL+ F E Q
Sbjct: 38 VLIDFTVYNNAMSAAHNLALRELYNKYASQ 67
>2lrn_A Thiol:disulfide interchange protein; structural genomics,
thioredoxin-like, NEW YORK structural G research
consortium, oxidoreductase; NMR {Bacteroides SP}
Length = 152
Score = 32.3 bits (74), Expect = 0.094
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
VLV F+ C C+K P + K +
Sbjct: 32 VLVDFWFAGCSWCRKETPYLLKTYNAFKDK 61
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
genomics, PSI, protein structure initiative; 1.12A
{Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 136
Score = 32.3 bits (74), Expect = 0.096
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQ 147
++ F+ PWC C P + AA
Sbjct: 27 AVLWFWTPWCPFCNAEAPSLSQVAAANPA 55
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G
midwest center for structural genomics, protein
structure initiative; 1.70A {Aeropyrum pernix}
Length = 165
Score = 32.5 bits (74), Expect = 0.11
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMK 146
V++ F A WC C + + +
Sbjct: 40 VILWFMAAWCPSCVYMADLLDRLTEKYR 67
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein
disulfide isomerase, protein folding, redox protein,
redox-active center; HET: MES; 1.90A {Escherichia coli}
SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A
2iyj_A
Length = 216
Score = 32.5 bits (73), Expect = 0.13
Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 7/107 (6%)
Query: 57 NAEVKYVYENGNTKDKIIEFVRNPQATSEEVKKKEQDWADTESEVVHLTDDNFDLVIQEE 116
N+ V Y+ ++G ++ P ++ L + +E
Sbjct: 33 NSGVLYITDDGKH------IIQGPMYDVSGTAPVNVTNKMLLKQLNALEKEMIVYKAPQE 86
Query: 117 SSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQA 163
V+ +F CG+C KL + + A R Y A
Sbjct: 87 KHVITVFTDITCGYCHKLHEQMADYNALGITVR-YLAFPRQGLDSDA 132
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural
genomics, joint center F structural genomics, JCSG;
2.02A {Parabacteroides distasonis}
Length = 143
Score = 32.0 bits (73), Expect = 0.13
Identities = 3/30 (10%), Positives = 8/30 (26%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
L+ F+A + + +
Sbjct: 35 TLLNFWAAYDAESRARNVQLANEVNKFGPD 64
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus
subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Length = 148
Score = 31.9 bits (73), Expect = 0.15
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
L+ F++ C CK+ P+ E + Q
Sbjct: 32 TLIHFWSISCHLCKEAMPQVNEFRDKYQDQ 61
>3f9u_A Putative exported cytochrome C biogenesis-related; exported
cytochrome C biogenesis-related protein, bacteroide
fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Length = 172
Score = 32.0 bits (72), Expect = 0.16
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYY 152
V++ F C +C+K++ Y
Sbjct: 50 VMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDY 83
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825
/ FA 1090), DSBC, structural genomics, unknown funct 2;
2.00A {Neisseria gonorrhoeae}
Length = 147
Score = 31.6 bits (71), Expect = 0.19
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 106 DDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASN 165
D V + +F P C CK+L+ E+E+ + M + P A+
Sbjct: 4 DKAIKEVRGNGKLKVAVFSDPDCPFCKRLEHEFEKM---TDVTVYSFMMPIAGLHPDAAR 60
Query: 166 VAVV 169
A +
Sbjct: 61 KAQI 64
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure
initiativ midwest center for structural genomics,
rossmann fold; 1.10A {Methanosarcina mazei}
Length = 103
Score = 30.4 bits (69), Expect = 0.21
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 112 VIQEESSVLVMFYAPWCGHCKKLK 135
V + ++M+ C CKK K
Sbjct: 16 VSGVDRGKVIMYGLSTCVWCKKTK 39
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2,
protein struct initiative; NMR {Neisseria meningitidis
serogroup B}
Length = 153
Score = 31.5 bits (72), Expect = 0.21
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
L+ F+ P C C P+ + A K +
Sbjct: 31 TLINFWFPSCPGCVSEMPKIIKTANDYKNK 60
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP:
c.47.1.10 PDB: 3ios_A
Length = 136
Score = 31.1 bits (71), Expect = 0.26
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQ 147
++ F+APWC C+ P + AA+ +
Sbjct: 28 AVLWFWAPWCPTCQGEAPVVGQVAASHPE 56
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB;
reduced, thiol-disulfide exchange, oxidoreductase; 1.60A
{Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Length = 164
Score = 31.3 bits (71), Expect = 0.27
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAY-YGMGMLRHRPQASNVAVVSSLRNKNG 177
L+ F+A WC C + E+ A K A + + + N
Sbjct: 41 TLIKFWASWCPLCLSELGQAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNY 100
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase,
PSI-II, structural genomics, protein structure
initiative; 2.09A {Chlorobium tepidum tls}
Length = 152
Score = 31.1 bits (71), Expect = 0.27
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
V + F+A WCG C++ P + A K +
Sbjct: 31 VYLDFWASWCGPCRQSFPWMNQMQAKYKAK 60
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics,
unknown function, thioredoxin-like; NMR {Bacteroides
vulgatus}
Length = 152
Score = 30.7 bits (70), Expect = 0.36
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
+ + +A WCG C+ P +E +
Sbjct: 33 IYIDVWATWCGPCRGELPALKELEEKYAGK 62
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB
struct genomics consortium, TBSGC, unknown function;
1.90A {Mycobacterium tuberculosis}
Length = 352
Score = 31.5 bits (71), Expect = 0.37
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
VL+ F+A C +C++ P K
Sbjct: 85 VLIDFWAYSCINCQRAIPHVVGWYQAYKDS 114
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Length = 217
Score = 31.1 bits (70), Expect = 0.39
Identities = 18/115 (15%), Positives = 39/115 (33%), Gaps = 5/115 (4%)
Query: 33 ERLTEKADPVCTREKAKKKVRRQKNAEVKYVYENGNTKDKIIEFVRNPQATSEEVKKKEQ 92
+ + + +R+ K R + ++ YE + + +R + + ++
Sbjct: 34 KEILRQMSSPQSRDDKDSKERMSRKMSIQ-EYELIHQDKEDEGCLRKYRRQCMQDMHQKL 92
Query: 93 DWADTESEVVHLTD-DNFDLVIQEESS---VLVMFYAPWCGHCKKLKPEYEEAAA 143
+ V L + F I++E ++V Y C L E AA
Sbjct: 93 SFGPRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAA 147
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like
fold, RESA-like fold, dithiol, STOA, redox-active
center; 2.50A {Bacillus subtilis}
Length = 145
Score = 30.0 bits (68), Expect = 0.54
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
++ F+ WC CKK P+++
Sbjct: 37 TILHFWTSWCPPCKKELPQFQSFYDAHPSD 66
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein
structure initiative; 2.00A {Neisseria meningitidis
serogroup B}
Length = 151
Score = 30.1 bits (68), Expect = 0.55
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
+V +A WCG C+K P + K+
Sbjct: 27 RIVNLWATWCGPCRKEMPAMSKWYKAQKKG 56
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET:
MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB:
1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A
3c73_A
Length = 151
Score = 29.9 bits (68), Expect = 0.60
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
V + F+ WC CKK P K Q
Sbjct: 29 VFLNFWGTWCEPCKKEFPYMANQYKHFKSQ 58
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI,
structural genomics, protein initiative; 2.45A
{Geobacter metallireducens gs-15}
Length = 154
Score = 30.0 bits (68), Expect = 0.69
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
V+V F+A WC C++ P A M +
Sbjct: 31 VIVNFWATWCPPCREEIPSMMRLNAAMAGK 60
>2ls5_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, NEW structural genomics research
consortium; NMR {Bacteroides thetaiotaomicron}
Length = 159
Score = 29.6 bits (67), Expect = 0.91
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
V++ F A WCG C+K P E+ +
Sbjct: 36 VMLQFTASWCGVCRKEMPFIEKDIWLKHKD 65
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural
genomics, PSI-2, protein structure initiative; 1.77A
{Geobacter metallireducens gs-15}
Length = 158
Score = 29.6 bits (67), Expect = 0.91
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
VLV F+A WC +C+ P + + +
Sbjct: 44 VLVNFWASWCPYCRDEMPSMDRLVKSFPKG 73
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
2.35A {Bordetella parapertussis}
Length = 195
Score = 30.0 bits (67), Expect = 1.00
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAY 151
++ F+A C HC ++P E+ A T Q
Sbjct: 28 EVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVVL 60
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius
rotundicauda}
Length = 143
Score = 29.3 bits (66), Expect = 1.0
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
+ F A WC C+ P + + +
Sbjct: 29 IGFYFSAHWCPPCRGFTPILADMYSELVDD 58
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II,
structural genomics, protein structure initiative; 1.66A
{Chlorobaculum tepidum}
Length = 165
Score = 29.3 bits (66), Expect = 1.2
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
+V F+A WC C+ P+ + T +
Sbjct: 37 YIVNFFATWCPPCRSEIPDMVQVQKTWASR 66
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1,
thiol-disulfide oxidoreduct TLPA-like family, PSI-2;
1.74A {Bacteroides thetaiotaomicron}
Length = 150
Score = 29.3 bits (66), Expect = 1.2
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 119 VLVMFYAPWCGHCKKLK--PEYEEAAATMKQQR 149
+L+ F+A W + + E E K+ +
Sbjct: 36 LLINFWASWNDSISQKQSNSELREIYKKYKKNK 68
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 1.2
Identities = 16/117 (13%), Positives = 32/117 (27%), Gaps = 45/117 (38%)
Query: 33 ERLTEKADPVCTREKAKKKVRRQKNAEVKYVYENGNTKDKIIEFVRNPQATSEEVKKKEQ 92
+RLT++ + + +K R ++ ++ D K EQ
Sbjct: 78 DRLTQEPESI-------RKWREEQRKRLQ-------ELD-------------AASKVMEQ 110
Query: 93 DWADTESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQR 149
+W + + L + + +K K A QQ
Sbjct: 111 EWREKAKK--DLEE----------------WNQRQSEQVEKNKINNRIADKAFYQQP 149
>2obd_A Cholesteryl ester transfer protein; lipid transfer protein, lipid
transport; HET: NDG FU4 2OB PCW EPE 1PE PG4; 2.10A {Homo
sapiens}
Length = 476
Score = 29.8 bits (66), Expect = 1.4
Identities = 13/103 (12%), Positives = 28/103 (27%), Gaps = 2/103 (1%)
Query: 251 KRIKSINSGSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRD 310
+K + G + ++ G + G A +L
Sbjct: 173 FTLKLVLKGQICKEINVIS--NIMADFVQTRAASILSDGDIGVDISLTGDPVITASYLES 230
Query: 311 ASRLVEFMRDPTEPPPPPPPEPAWAEEPSEVYHLGADNFASTL 353
+ +D +E P P P + +Y ++ +L
Sbjct: 231 HHKGHFIYKDVSEDLPLPTFSPTLLGDSRMLYFWFSERVFHSL 273
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR
{Chlamydophila pneumoniae}
Length = 154
Score = 28.7 bits (64), Expect = 1.6
Identities = 5/20 (25%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 119 VLVMF-YAPWCGHCKKLKPE 137
+ + F + WC C K++ +
Sbjct: 50 IGLFFTGSDWCMWCIKMQDQ 69
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia
fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A
1oc9_B 1fg4_A 1oc9_A
Length = 144
Score = 28.6 bits (64), Expect = 1.9
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
V F A WC + P+ + ++
Sbjct: 31 VFFYFSASWCPPSRAFTPQLIDFYKAHAEK 60
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox
protein, protein disulfide isomerase, thioredoxin fold;
1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB:
1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Length = 241
Score = 29.2 bits (65), Expect = 2.0
Identities = 15/130 (11%), Positives = 43/130 (33%), Gaps = 19/130 (14%)
Query: 52 VRRQKNAEVKYVYENGN----------TKDKIIEFVRNPQATSEEVKKKEQDWADTESEV 101
+ Q Y+ +G + + + + + ++ Q
Sbjct: 32 GKYQDMGVTIYLTPDGKHAISGYMYNEKGENLSNTLIEKEIYAPAGREMWQRMEQ----- 86
Query: 102 VHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRP 161
++ ++ +F P+C +CK+ + + K Q +G+++
Sbjct: 87 ----SHWLLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDSGKVQLRTLLVGVIKPES 142
Query: 162 QASNVAVVSS 171
A+ A+++S
Sbjct: 143 PATAAAILAS 152
>4evm_A Thioredoxin family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.51A
{Streptococcus pneumoniae}
Length = 138
Score = 28.4 bits (64), Expect = 2.2
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
V + F+A WC C P+ +E A
Sbjct: 25 VYLKFWASWCSICLASLPDTDEIAKEAGDD 54
>1bed_A DSBA oxidoreductase; TCPG, protein disulfide isomerase, disulfide
oxidoreductase; 2.00A {Vibrio cholerae} SCOP: c.47.1.13
PDB: 2ijy_A
Length = 181
Score = 28.5 bits (63), Expect = 2.4
Identities = 6/50 (12%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAY-YGMGMLRHRPQASNVA 167
V+ F++ +C HC +P + + + + ++
Sbjct: 21 VVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQKNHVSFMGGNMGQAMS 70
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron
transport; 1.80A {Leishmania major}
Length = 165
Score = 28.3 bits (63), Expect = 2.4
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQR 149
V F A WC C+ P+ E +
Sbjct: 51 VFFYFSASWCPPCRGFTPQLVEFYEKHHDSK 81
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA,
thioredoxin fold, redox- active center; 1.90A {Xylella
fastidiosa}
Length = 193
Score = 28.5 bits (63), Expect = 2.5
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAY 151
+V + C HC + + A + +
Sbjct: 28 EVVEIFGYTCPHCAHFDSKLQAWGARQAKDVRF 60
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase,
disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB:
3dvw_A 3a3t_A
Length = 193
Score = 28.6 bits (63), Expect = 2.7
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYY 152
++ F+ +C HC L+P + A + K
Sbjct: 27 EVLEFFGYFCPHCAHLEPVLSKHAKSFKDDMYLR 60
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A
{Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Length = 123
Score = 27.7 bits (61), Expect = 2.9
Identities = 7/55 (12%), Positives = 19/55 (34%), Gaps = 9/55 (16%)
Query: 107 DNFDLVIQEES--SVLVMFYA-------PWCGHCKKLKPEYEEAAATMKQQRAYY 152
+ F +++ + ++ F WC C + +P E + + +
Sbjct: 13 EEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFI 67
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Length = 167
Score = 28.1 bits (62), Expect = 3.2
Identities = 9/68 (13%), Positives = 18/68 (26%), Gaps = 3/68 (4%)
Query: 82 ATSEEVKKKEQDWADTESEVVHLTDDNFDLV--IQEESSVLVMFYAPWCGHCKKLKPEYE 139
++ + E L + + I+ +LV WC C+ +
Sbjct: 19 GHGLATEQGAVARFRQKLESNGLPSALTERLQRIERRYRLLV-AGEMWCPDCQINLAALD 77
Query: 140 EAAATMKQ 147
A
Sbjct: 78 FAQRLQPN 85
>1ydw_A AX110P-like protein; structural genomics, protein structure
initiative, center for eukaryotic structural genomics,
CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP:
c.2.1.3 d.81.1.5 PDB: 2q4e_A
Length = 362
Score = 28.5 bits (64), Expect = 3.3
Identities = 13/89 (14%), Positives = 32/89 (35%), Gaps = 4/89 (4%)
Query: 247 VGTGKRIKSINSGSFSPRQITGILAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAG 306
+GT ++ + P + T A+ + + P ++ + +A
Sbjct: 254 IGTKGTLRVHDF--IIPYKETE--ASFTTSTKAWFNDLVTAWVSPPSEHTVKTELPQEAC 309
Query: 307 HLRDASRLVEFMRDPTEPPPPPPPEPAWA 335
+R+ +RLV +++ P P +
Sbjct: 310 MVREFARLVGEIKNNGAKPDGYWPSISRK 338
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation,
disulfide bonds tryparedoxin, thioredoxin, trypanosome;
1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A
1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Length = 146
Score = 27.8 bits (62), Expect = 3.9
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEA 141
V F A WC + P+ E
Sbjct: 31 VFFYFSASWCPPARGFTPQLIEF 53
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide
oxidoreductase, oxidoreductase, protein disulfide
isomerase, protein folding, thioredoxin; 2.4A
{Escherichia coli} SCOP: c.47.1.13
Length = 197
Score = 27.8 bits (61), Expect = 3.9
Identities = 5/29 (17%), Positives = 14/29 (48%)
Query: 120 LVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
++ F++ +C HC + + + K+
Sbjct: 117 VLEFFSFFCPHCYQFEEVLHISDNVKKKL 145
>2de6_A Terminal oxygenase component of carbazole; electron transfer
complex, rieske non-heme iron oxygenase system, terminal
oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2
d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Length = 392
Score = 28.4 bits (63), Expect = 4.5
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 317 FMRDPTEPPPPPPPEPAWAEEPSEVYH 343
++ D PP P + ++ E+
Sbjct: 136 YLGDGDPPPLARDTPPNFLDDDMEILG 162
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A
{Aeropyrum pernix}
Length = 243
Score = 27.9 bits (61), Expect = 4.6
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 104 LTDDNFDLVIQEESSV-LVMFYAPWCGHCKKLKPEYEEAA 142
L D + + + V + P C +C A
Sbjct: 125 LEDATKEALKSLKGRVHIETIITPSCPYCPYAVLLAHMFA 164
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase,
oxidoreductase; 1.75A {Stenotrophomonas maltophilia}
PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*
Length = 349
Score = 28.3 bits (63), Expect = 4.8
Identities = 6/29 (20%), Positives = 10/29 (34%)
Query: 317 FMRDPTEPPPPPPPEPAWAEEPSEVYHLG 345
+ DP P P+ +P+ G
Sbjct: 112 WPGDPALADPGAIPDFGCRVDPAYRTVGG 140
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG,
structural genomics, midwest center for structural
genomics; 1.75A {Corynebacterium glutamicum}
Length = 183
Score = 27.4 bits (61), Expect = 4.9
Identities = 4/30 (13%), Positives = 12/30 (40%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
V++ + WC C+ + + ++
Sbjct: 62 VILNAWGQWCAPCRSESDDLQIIHEELQAA 91
>3l09_A Putative transcriptional regulator; structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
transcription regulator; 2.81A {Jannaschia SP}
Length = 266
Score = 28.1 bits (62), Expect = 5.1
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 200 PAAHSPASPIRQTPHPEPHRPVRSLLLLLLGSYWRPE 236
A P P+ + + E + S+L+ LG R
Sbjct: 3 ADASDPIRPLVEALNAEAPLKLWSVLVTCLGDVSRDG 39
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond,
redox-active center, transcription regulator; HET: MSE
GOL; 1.50A {Pseudomonas aeruginosa PAO1}
Length = 192
Score = 27.4 bits (60), Expect = 5.2
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAY 151
+V + C HC +P + + +
Sbjct: 28 EVVELFWYGCPHCYAFEPTIVPWSEKLPADVHF 60
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA
splicing, transcription; NMR {Mus musculus}
Length = 140
Score = 27.2 bits (60), Expect = 5.4
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 321 PTEPPPPPPPEPAWAEEPSEVYHL 344
+ P P WA +P HL
Sbjct: 14 NSGSSLPLFDCPTWAGKPPPGLHL 37
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin;
thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase,
ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella
enterica subsp}
Length = 189
Score = 27.7 bits (60), Expect = 5.6
Identities = 5/30 (16%), Positives = 9/30 (30%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
+V F++ +C C A
Sbjct: 17 AVVEFFSFYCPPCYAFSQTMGVDQAIRHVL 46
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold,
DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis
serogroup B} PDB: 3dvx_A
Length = 195
Score = 27.5 bits (60), Expect = 6.0
Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 3/60 (5%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQRA---YYGMGMLRHRPQASNVAVVSSLRNK 175
++ F+ +C HC P + + + + A A V+ K
Sbjct: 25 EVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEHVVWQPEMLGLARMAAAVNLSGLK 84
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein
disulfide isomerase, protein folding, redox protein;
2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Length = 211
Score = 27.6 bits (60), Expect = 6.1
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 10/86 (11%)
Query: 57 NAEVKYVYENGNT--KDKIIEFVRNPQATSEEVKKKEQDWADTESEVVHLTDDNFDLVIQ 114
+ + YV E+G + K+ E N ++ + D+ +
Sbjct: 33 DQGILYVSEDGKYLFEGKLYELTNNGPVDVAGKILVDKLNS--------YKDEMIVYPAK 84
Query: 115 EESSVLVMFYAPWCGHCKKLKPEYEE 140
E V+ +F C +C L + +E
Sbjct: 85 NEKHVVTVFMDITCHYCHLLHQQLKE 110
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin;
2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Length = 144
Score = 26.9 bits (60), Expect = 6.1
Identities = 8/28 (28%), Positives = 10/28 (35%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMK 146
V + F A WC C+ P E
Sbjct: 31 VFLYFSASWCPPCRGFTPVLAEFYEKHH 58
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2,
NYSGXRC, structu genomics, protein structure initiative;
1.76A {Thermus thermophilus}
Length = 154
Score = 26.9 bits (60), Expect = 6.3
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
+++F+A WC CK P A
Sbjct: 33 AVIVFWASWCTVCKAEFPGLHRVAEETGVP 62
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics,
PSI-2, protein ST initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.76A {Vibrio
fischeri}
Length = 185
Score = 27.3 bits (59), Expect = 6.5
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 113 IQEESSVLVM-FYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVA 167
++ + V +A CGHC+ ++ ++ G + A +
Sbjct: 18 LENDGMAPVTEVFALSCGHCRNMENFLPV---ISQEAGTDIGKMHITFNQSAHIAS 70
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
c.47.1.24
Length = 153
Score = 26.8 bits (59), Expect = 7.1
Identities = 2/19 (10%), Positives = 7/19 (36%)
Query: 119 VLVMFYAPWCGHCKKLKPE 137
+++ C+ L +
Sbjct: 45 LMINIQNVQDFACQCLNRD 63
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein
structure initiative; HET: MSE; 1.47A {Corynebacterium
glutamicum atcc 13032}
Length = 317
Score = 27.2 bits (60), Expect = 8.7
Identities = 12/74 (16%), Positives = 19/74 (25%), Gaps = 9/74 (12%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAF--DAGHLRDASRLVEFMRDPTEPPPP 327
+ + T ++ + G P + F A D + P
Sbjct: 249 FFSSNSTEASAITRELLGGGVPAQYKDESWVRKFASGAQARHDGVS-------TLQMPSD 301
Query: 328 PPPEPAWAEEPSEV 341
P PA E S
Sbjct: 302 TPQHPAETPEHSNT 315
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA,
thiol-disulfide oxidoreductase, DISU bond, redox-active
center; 1.58A {Salmonella enterica subsp} PDB: 1a23_A
1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A
1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A*
3e9j_B* 1ac1_A 2b6m_A 2b3s_A
Length = 191
Score = 26.8 bits (58), Expect = 9.9
Identities = 5/30 (16%), Positives = 14/30 (46%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
++ F++ +C HC + + + K+
Sbjct: 24 QVLEFFSFYCPHCYQFEEVLHVSDNVKKKL 53
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.397
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,724,753
Number of extensions: 348480
Number of successful extensions: 1435
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1344
Number of HSP's successfully gapped: 291
Length of query: 366
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 271
Effective length of database: 4,049,298
Effective search space: 1097359758
Effective search space used: 1097359758
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.2 bits)