RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1110
(366 letters)
>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit
fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 122
Score = 73.2 bits (179), Expect = 1e-16
Identities = 6/50 (12%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 99 SEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
+ V L + +F+ ++ +V F K + + + +
Sbjct: 2 TGCVDLDELSFEKTVERFPYSVVKFDIASPYGEK--HEAFTAFSKSAHKA 49
Score = 36.6 bits (84), Expect = 0.001
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 339 SEVYHLGADNFASTLRKKKHALVMFYAP 366
+ L +F T+ + +++V F
Sbjct: 2 TGCVDLDELSFEKTVERFPYSVVKFDIA 29
>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29,
N-terminal domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 122
Score = 65.4 bits (159), Expect = 7e-14
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 5/54 (9%)
Query: 101 VVHLTDDNFDLVIQEESSVLVMFYAPWCGHCK-----KLKPEYEEAAATMKQQR 149
+ L F VI + VLV F + K +L + + +
Sbjct: 6 ALPLDTVTFYKVIPKSKFVLVKFDTQYPYGEKQDEFKRLAENSASSDDLLVAEV 59
Score = 33.1 bits (75), Expect = 0.014
Identities = 7/26 (26%), Positives = 8/26 (30%)
Query: 341 VYHLGADNFASTLRKKKHALVMFYAP 366
L F + K K LV F
Sbjct: 6 ALPLDTVTFYKVIPKSKFVLVKFDTQ 31
>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 124
Score = 59.8 bits (144), Expect = 7e-12
Identities = 9/73 (12%), Positives = 27/73 (36%), Gaps = 6/73 (8%)
Query: 96 DTESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGH------CKKLKPEYEEAAATMKQQR 149
D V+++ N+ V ++ + ++++ P + + E AA ++ +
Sbjct: 8 DGVDRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKG 67
Query: 150 AYYGMGMLRHRPQ 162
+G+
Sbjct: 68 VGFGLVDSEKDAA 80
Score = 32.9 bits (74), Expect = 0.019
Identities = 5/31 (16%), Positives = 16/31 (51%)
Query: 336 EEPSEVYHLGADNFASTLRKKKHALVMFYAP 366
+ V ++ A N+ + +K + ++++ P
Sbjct: 8 DGVDRVINVNAKNYKNVFKKYEVLALLYHEP 38
Score = 31.7 bits (71), Expect = 0.041
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTEPP 325
VD ++ ++ K+ + ++ F+ V G A LVEF+ D E P
Sbjct: 70 FGLVDSEKDAAVAKKLGLTEEDSIYVFKEDEVIEYDGE-FSADTLVEFLLDVLEDP 124
>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}
Length = 108
Score = 59.0 bits (142), Expect = 1e-11
Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 101 VVHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
++HLTDD+FD V++ + ++LV F+A WCG CK + P +E A + +
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK 52
Score = 27.1 bits (59), Expect = 1.4
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 341 VYHLGADNFAS-TLRKKKHALVMFYAP 366
+ HL D+F + L+ LV F+A
Sbjct: 4 IIHLTDDSFDTDVLKADGAILVDFWAE 30
>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 140
Score = 59.9 bits (144), Expect = 1e-11
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 89 KKEQDWADTESEVVHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQ 147
K ++ + + +S V L N D +V + VLV++YAPWCGHCK+L P Y+E A T
Sbjct: 2 KSQEIFENQDSSVFQLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYAN 61
Query: 148 QRAYYGMGMLRHRPQ 162
+ + L H
Sbjct: 62 ATSDVLIAKLDHTEN 76
>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo
sapiens) [TaxId: 9606]}
Length = 120
Score = 57.2 bits (137), Expect = 6e-11
Identities = 24/61 (39%), Positives = 33/61 (54%)
Query: 96 DTESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMG 155
+ E V+ L NF + +LV FYAPWCGHCK L PEY +AA +K + + +
Sbjct: 4 EEEDHVLVLRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLA 63
Query: 156 M 156
Sbjct: 64 K 64
Score = 38.3 bits (88), Expect = 3e-04
Identities = 15/31 (48%), Positives = 16/31 (51%)
Query: 336 EEPSEVYHLGADNFASTLRKKKHALVMFYAP 366
EE V L NFA L K+ LV FYAP
Sbjct: 4 EEEDHVLVLRKSNFAEALAAHKYLLVEFYAP 34
Score = 30.2 bits (67), Expect = 0.13
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 274 DVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGH--LRDASRLVEFMRDPTEPP 325
D T E L +++ ++G+PT+K+FR G A + R+A +V +++ T P
Sbjct: 66 DATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTAGREADDIVNWLKKRTGPA 119
>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi
(Humicola insolens) [TaxId: 34413]}
Length = 116
Score = 55.6 bits (133), Expect = 2e-10
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 98 ESEVVHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
E V + N++ +V+ + VL+ FYAPWCGHCK L P+YEE A +
Sbjct: 1 EGPVTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKS 52
>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 119
Score = 55.7 bits (133), Expect = 2e-10
Identities = 26/73 (35%), Positives = 38/73 (52%)
Query: 90 KEQDWADTESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQR 149
+++ A +S VV L D+F+ IQ VL F+APWCGHCK + PEY +AA T+ ++
Sbjct: 1 QQEAVAPEDSAVVKLATDSFNEYIQSHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKN 60
Query: 150 AYYGMGMLRHRPQ 162
Sbjct: 61 ITLAQIDCTENQD 73
Score = 37.6 bits (86), Expect = 4e-04
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 331 EPAWAEEPSEVYHLGADNFASTLRKKKHALVMFYAP 366
+ A A E S V L D+F ++ L F+AP
Sbjct: 2 QEAVAPEDSAVVKLATDSFNEYIQSHDLVLAEFFAP 37
Score = 27.6 bits (60), Expect = 1.3
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 275 VTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGH--LRDASRLVEFMRDPTEP 324
T + L +I GFP+LK F+ V + R A +V+FM ++P
Sbjct: 68 CTENQDLCMEHNIPGFPSLKIFKNSDVNNSIDYEGPRTAEAIVQFMIKQSQP 119
>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId:
1167]}
Length = 108
Score = 54.8 bits (131), Expect = 3e-10
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 99 SEVVHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGM 156
V+ +TD F+ V++ E VLV F+A WCG C+ + P AA T + + +
Sbjct: 2 KGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEI 60
Score = 27.5 bits (60), Expect = 0.98
Identities = 6/44 (13%), Positives = 19/44 (43%)
Query: 275 VTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFM 318
+ + K++ ++G P L+ + + + +L+ F+
Sbjct: 60 IDPNPTTVKKYKVEGVPALRLVKGEQILDSTEGVISKDKLLSFL 103
Score = 26.7 bits (58), Expect = 2.1
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 339 SEVYHLGADNFAS-TLRKKKHALVMFYAP 366
V + F S L+ ++ LV F+A
Sbjct: 2 KGVITITDAEFESEVLKAEQPVLVYFWAS 30
>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii
[TaxId: 3055]}
Length = 107
Score = 51.4 bits (122), Expect = 4e-09
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 100 EVVHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLR 158
E + DD F +V++ VLV F+APWCG C+ + P +E A K + +
Sbjct: 2 EAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDE 61
Query: 159 HRPQASNVAVVS 170
AS + S
Sbjct: 62 SPNVASEYGIRS 73
>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo
sapiens) [TaxId: 9606]}
Length = 137
Score = 50.9 bits (121), Expect = 1e-08
Identities = 15/93 (16%), Positives = 25/93 (26%), Gaps = 6/93 (6%)
Query: 101 VVHLTD-DNFDLVIQEESS--VLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGML 157
+ HL + D I E V++ F W C K+ A +K Y + +
Sbjct: 4 LPHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDIT 63
Query: 158 RHRPQASNVAVVSSLRN---KNGEPTTHPSGTP 187
+ + GT
Sbjct: 64 EVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTG 96
>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea),
thioredoxin F [TaxId: 3562]}
Length = 112
Score = 49.4 bits (117), Expect = 3e-08
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 99 SEVVHLTDDNFDLVIQEESS--VLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGM 154
+V + D F +++ V++ + WCG CK + P+YE+ A
Sbjct: 6 GKVTEVNKDTFWPIVKAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLD 63
>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein
Bta {Streptococcus pneumoniae [TaxId: 1313]}
Length = 115
Score = 49.1 bits (116), Expect = 4e-08
Identities = 7/63 (11%), Positives = 17/63 (26%)
Query: 94 WADTESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYG 153
+ D ++ T + ++ + C +C+K A K +
Sbjct: 4 FLDNIKDLEVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFIN 63
Query: 154 MGM 156
Sbjct: 64 SEE 66
Score = 26.8 bits (58), Expect = 1.9
Identities = 4/33 (12%), Positives = 9/33 (27%)
Query: 334 WAEEPSEVYHLGADNFASTLRKKKHALVMFYAP 366
+ + ++ L KK+ A
Sbjct: 4 FLDNIKDLEVTTVVRAQEALDKKETATFFIGRK 36
>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius,
formerly Bacillus acidocaldarius [TaxId: 405212]}
Length = 105
Score = 47.5 bits (112), Expect = 1e-07
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 101 VVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHR 160
+ LTD NF IQ + VLV F+A WCG C+ + P EE A + + + +
Sbjct: 2 TMTLTDANFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENP 61
Query: 161 PQASNVAVVS---SLRNKNGEPTTHPSG 185
S ++S + K GEP G
Sbjct: 62 ETTSQFGIMSIPTLILFKGGEPVKQLIG 89
Score = 30.9 bits (69), Expect = 0.063
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 270 LAAVDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRD 320
+A ++V +F I PTL F+ G + +L + D
Sbjct: 52 VAKLNVDENPETTSQFGIMSIPTLILFKGGEPVKQLIGYQPKEQLEAQLAD 102
>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea),
thioredoxin M [TaxId: 3562]}
Length = 104
Score = 46.5 bits (109), Expect = 2e-07
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 101 VVHLTDDNFD-LVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGM 156
V + D ++ V++ E V+V F+APWCG CK + P +E A + A Y +
Sbjct: 1 VQDVNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNT 57
>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 107
Score = 46.4 bits (109), Expect = 3e-07
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 8/90 (8%)
Query: 104 LTDDNFDLVIQEESSVLV-MFYAPWCGHCKKLKPEYEEAAATMKQQRA-------YYGMG 155
L D+ + + V + +F P C +C + A + +
Sbjct: 2 LMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE 61
Query: 156 MLRHRPQASNVAVVSSLRNKNGEPTTHPSG 185
Q + +AV + NGE G
Sbjct: 62 YPEWADQYNVMAVPKIVIQVNGEDRVEFEG 91
>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 85
Score = 43.5 bits (102), Expect = 2e-06
Identities = 7/43 (16%), Positives = 16/43 (37%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRP 161
+ +F +P C +C +EA + + ++ R
Sbjct: 4 NIEVFTSPTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDRE 46
>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 114
Score = 44.1 bits (103), Expect = 2e-06
Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 7/101 (6%)
Query: 95 ADTESEVVHL-TDDNFDLVIQEESS----VLVMFYAPWCGHCKKLKPEYEEAAATMKQQR 149
A E +V+ T + ++ +Q+ + V+V F A WCG C+ + P + + A +
Sbjct: 2 ASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVL 61
Query: 150 AYYGMGMLRHR-PQASNVAVVSSLRN-KNGEPTTHPSGTPQ 188
+ + + K G+ G +
Sbjct: 62 FLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKK 102
>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE
{Salmonella typhimurium [TaxId: 90371]}
Length = 119
Score = 43.8 bits (103), Expect = 3e-06
Identities = 5/52 (9%), Positives = 10/52 (19%), Gaps = 2/52 (3%)
Query: 104 LTDDNFDLVIQE--ESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYG 153
+ D I+ + +L+ E Q
Sbjct: 16 VEASTVDDWIKRVGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFDWQVA 67
>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE
{Escherichia coli [TaxId: 562]}
Length = 132
Score = 43.5 bits (102), Expect = 4e-06
Identities = 4/55 (7%), Positives = 11/55 (20%), Gaps = 2/55 (3%)
Query: 104 LTDDNFDLVIQ--EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGM 156
+++ D + + VL+ E +
Sbjct: 22 VSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIAD 76
Score = 29.6 bits (66), Expect = 0.23
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 273 VDVTREKSLGKRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTEPP 325
D+ + +++G RF + FP F G+ + + L+ MR EP
Sbjct: 75 ADLEQSEAIGDRFGVFRFPATLVFTGGNYRGVLNGIHPWAELINLMRGLVEPQ 127
>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId:
5691]}
Length = 113
Score = 39.8 bits (92), Expect = 5e-05
Identities = 13/58 (22%), Positives = 23/58 (39%)
Query: 99 SEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGM 156
S V + + F ++ E+ + F A WCG CK ++ E+ A +
Sbjct: 9 SVVDVYSVEQFRNIMSEDILTVAWFTAVWCGPCKTIERPMEKIAYEFPTVKFAKVDAD 66
Score = 31.4 bits (70), Expect = 0.048
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 335 AEEPSEVYHLGADNFASTLRKKKHALVMFYAP 366
A PS V + F + + + + F A
Sbjct: 5 ARYPSVVDVYSVEQFRNIMSEDILTVAWFTAV 36
>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus
tremula), thioredoxin H [TaxId: 113636]}
Length = 113
Score = 39.8 bits (92), Expect = 6e-05
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 98 ESEVVHL-----TDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYY 152
E +V+ ++F+ + ++V F A WC CK + P + E A
Sbjct: 3 EGQVIACHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPNVTFLK 62
Query: 153 GMGM 156
Sbjct: 63 VDVD 66
>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii
[TaxId: 3055]}
Length = 112
Score = 39.4 bits (91), Expect = 7e-05
Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 8/98 (8%)
Query: 99 SEVVHL-TDDNFDLVIQEESS----VLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYG 153
V+ + + +D + + ++V F A WCG CK + P +E + + +
Sbjct: 2 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLK 61
Query: 154 MGMLRHRPQASNVAVVSS---LRNKNGEPTTHPSGTPQ 188
+ + A + + K+G G Q
Sbjct: 62 VDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQ 99
>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 103
Score = 38.6 bits (89), Expect = 1e-04
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 102 VHLTDDNFDLVIQEESSVLVMFYAPWCGHC 131
+ + FD +I + V+V F+A WCG C
Sbjct: 4 IVTSQAEFDSIISQNELVIVDFFAEWCGPC 33
Score = 24.8 bits (53), Expect = 7.6
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 347 DNFASTLRKKKHALVMFYAP 366
F S + + + +V F+A
Sbjct: 9 AEFDSIISQNELVIVDFFAE 28
>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 107
Score = 38.6 bits (89), Expect = 1e-04
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 105 TDDNFDLVIQEESS--VLVMFYAPWCGHC 131
+D +F + S +V F CG C
Sbjct: 8 SDPDFQPELSGAGSRLAVVKFTMRGCGPC 36
Score = 27.0 bits (59), Expect = 1.5
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 274 DVTREKSLGKRFDIKGFPTLKYFRAG 299
DV + + +I PT ++FR
Sbjct: 59 DVHQCQGTAATNNISATPTFQFFRNK 84
>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin
containing protein Txnl5) {Human (Homo sapiens) [TaxId:
9606]}
Length = 119
Score = 38.7 bits (89), Expect = 2e-04
Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 9/62 (14%)
Query: 100 EVVHLTDDNFDLVIQEESS--VLVMFYA-------PWCGHCKKLKPEYEEAAATMKQQRA 150
EV + F +++ + + F WC C + +P E + +
Sbjct: 3 EVSVSGFEEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCV 62
Query: 151 YY 152
+
Sbjct: 63 FI 64
>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 38.7 bits (89), Expect = 2e-04
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 106 DDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
+D ++V+ + WCG CK LKP++ E+ +
Sbjct: 15 EDGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELS 57
>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 105
Score = 37.0 bits (85), Expect = 4e-04
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 105 TDDNFDLVIQEESS--VLVMFYAPWCGHCKKLKPEY 138
+ F + V+V F A WCG CK +KP +
Sbjct: 7 SKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFF 42
>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 85
Score = 36.5 bits (83), Expect = 5e-04
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASNVAVVSS---LRNK 175
+ +F +P C HC K EE A M + ++ + +A +++ + N
Sbjct: 5 KIELFTSPMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVING 64
Query: 176 NGE 178
+ E
Sbjct: 65 DVE 67
>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein
C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}
Length = 100
Score = 36.6 bits (84), Expect = 5e-04
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMK 146
VL +F C C + K +
Sbjct: 18 VLTLFTKAPCPLCDEAKEVLQPYKDRFI 45
>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 111
Score = 36.8 bits (84), Expect = 7e-04
Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 6/98 (6%)
Query: 95 ADTESEVVHLTD-DNFDLVIQEESS--VLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAY 151
A + V + D + D + + S V++ F+A WCG CK + P+ E +
Sbjct: 1 AAAAAMVYQVKDKADLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVV 60
Query: 152 YGMGMLRHRPQASNVAV---VSSLRNKNGEPTTHPSGT 186
+ + A + + + KNG +G
Sbjct: 61 LKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGA 98
>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 217
Score = 37.7 bits (87), Expect = 0.001
Identities = 17/105 (16%), Positives = 30/105 (28%), Gaps = 4/105 (3%)
Query: 45 REKAKKKVRRQKNAEVKYVYENGNTKDKIIEFVRNPQATSEEVKKKEQDWADTESEVVHL 104
K R YE + + +R + + ++ + V L
Sbjct: 45 SRDDKDSKERMSRKMSIQEYELIHQDKEDEGCLRKYRRQCMQDMHQKLSFGPRYGFVYEL 104
Query: 105 TD-DNFDLVIQEESS---VLVMFYAPWCGHCKKLKPEYEEAAATM 145
+ F I++E ++V Y C L E AA
Sbjct: 105 ETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEY 149
>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein
DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli
[TaxId: 562]}
Length = 117
Score = 34.6 bits (78), Expect = 0.004
Identities = 11/57 (19%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Query: 105 TDDNFDLVIQEESS--VLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRH 159
T D + + E V++ YA WC CK+ + K +
Sbjct: 9 TVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQANVT 65
>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV
{Bacillus subtilis [TaxId: 1423]}
Length = 143
Score = 33.7 bits (76), Expect = 0.011
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 96 DTESEVVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKK 133
+ E L + + E L+ F++ C CK+
Sbjct: 9 ELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKE 46
>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit
F (AhpF), N-terminal domain {Salmonella typhimurium
[TaxId: 90371]}
Length = 96
Score = 32.4 bits (73), Expect = 0.017
Identities = 4/33 (12%), Positives = 10/33 (30%)
Query: 115 EESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQ 147
+ +Y+ C +C + A +
Sbjct: 14 DGDFEFETYYSLSCHNCPDVVQALNLMAVLNPR 46
>d1fuia1 b.43.2.1 (A:356-591) L-fucose isomerase, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 236
Score = 32.8 bits (75), Expect = 0.041
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 17/68 (25%)
Query: 231 SYWRPESVGR--GWELRQVGTGKRIKSINSGSFSPRQITGILAAVDVTREKSLGKRFDIK 288
+YW PE++ R G +L + I INSGS AA+D + K+ D +
Sbjct: 9 TYWSPEAIERVTGHKLDGLAEHGIIHLINSGS----------AALDGS-----CKQRDSE 53
Query: 289 GFPTLKYF 296
G PT+K
Sbjct: 54 GNPTMKPH 61
>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 166
Score = 32.2 bits (72), Expect = 0.044
Identities = 8/89 (8%), Positives = 18/89 (20%), Gaps = 6/89 (6%)
Query: 64 YENGNTKDKIIEFVRNPQATSEEVKKKEQDWADTESEVVHLTDDNFDLVIQEESSVLVMF 123
++ G + + + + L E L++
Sbjct: 8 FDIGEDFAAFVGH------GLATEQGAVARFRQKLESNGLPSALTERLQRIERRYRLLVA 61
Query: 124 YAPWCGHCKKLKPEYEEAAATMKQQRAYY 152
WC C+ + A
Sbjct: 62 GEMWCPDCQINLAALDFAQRLQPNIELAI 90
>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 156
Score = 30.9 bits (69), Expect = 0.11
Identities = 17/110 (15%), Positives = 31/110 (28%)
Query: 104 LTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQA 163
L + +E V+ +F CG+C KL + + A R
Sbjct: 14 LEKEMIVYKAPQEKHVITVFTDITCGYCHKLHEQMADYNALGITVRYLAFPRQGLDSDAE 73
Query: 164 SNVAVVSSLRNKNGEPTTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTP 213
+ + ++KN +G + A + TP
Sbjct: 74 KEMKAIWCAKDKNKAFDDVMAGKSVAPASCDVDIADHYALGVQLGVSGTP 123
>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY,
DsbE) {Escherichia coli [TaxId: 562]}
Length = 136
Score = 30.0 bits (66), Expect = 0.22
Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 100 EVVHLTDDNFDL-VIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYY 152
E + + V+ + VL+ +A WC + + +A +
Sbjct: 3 ESLDNPGQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSAQGIRVVGMN 56
>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase
MsrA/MsrB, N-terminal domain {Neisseria meningitidis
serogroup A [TaxId: 65699]}
Length = 143
Score = 29.9 bits (66), Expect = 0.22
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 109 FDLVIQEESSVLVMFYAPWCGHCKKLKPEY 138
+ ++++ L+ F+A WC C +
Sbjct: 16 ASVYLKKDKPTLIKFWASWCPLCLSELGQT 45
>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770
{Enterococcus faecalis [TaxId: 1351]}
Length = 172
Score = 28.8 bits (63), Expect = 0.74
Identities = 10/47 (21%), Positives = 18/47 (38%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQASN 165
++ F C +C+K E EE A + + L + + S
Sbjct: 27 KMIEFINVRCPYCRKWFEESEELLAQSVKSGKVERIIKLFDKEKESL 73
>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin
{Corynebacterium ammoniagenes [TaxId: 1697]}
Length = 74
Score = 27.3 bits (60), Expect = 0.76
Identities = 4/21 (19%), Positives = 8/21 (38%)
Query: 120 LVMFYAPWCGHCKKLKPEYEE 140
+ ++ P C C K +
Sbjct: 3 ITLYTKPACVQCTATKKALDR 23
>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 147
Score = 27.8 bits (61), Expect = 1.2
Identities = 4/47 (8%), Positives = 14/47 (29%)
Query: 106 DDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYY 152
+ + + +++ C+ L + A R ++
Sbjct: 32 ETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHF 78
>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata
[TaxId: 5656]}
Length = 144
Score = 27.9 bits (61), Expect = 1.4
Identities = 7/38 (18%), Positives = 15/38 (39%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGM 156
V F A WC + P+ + +++ + M +
Sbjct: 31 VFFYFSASWCPPSRAFTPQLIDFYKAHAEKKNFEVMLI 68
>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC,
C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Length = 150
Score = 27.8 bits (61), Expect = 1.4
Identities = 14/110 (12%), Positives = 28/110 (25%)
Query: 104 LTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHRPQA 163
D+ + E V+ +F C +C L + +E R + A
Sbjct: 14 YKDEMIVYPAKNEKHVVTVFMDITCHYCHLLHQQLKEYNDLGITVRYLAFPRAGMNNQTA 73
Query: 164 SNVAVVSSLRNKNGEPTTHPSGTPQTSDTPRTQCCHPAAHSPASPIRQTP 213
+ + + ++ G +R TP
Sbjct: 74 KQMEAIWTAKDPVFALNEAEKGNLPKEVKTPNIVKKHYELGIQFGVRGTP 123
>d2d7va1 d.227.1.1 (A:7-161) Hypothetical protein VCA0330 {Vibrio
cholerae [TaxId: 666]}
Length = 155
Score = 27.8 bits (61), Expect = 1.5
Identities = 15/49 (30%), Positives = 19/49 (38%)
Query: 283 KRFDIKGFPTLKYFRAGSVAFDAGHLRDASRLVEFMRDPTEPPPPPPPE 331
KR D + F +Y RA + FD G AS + P PE
Sbjct: 12 KRKDSEAFTDNQYSRAHTWEFDGGSKILASASPHVVPVPLSVEANVDPE 60
>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA)
{Escherichia coli [TaxId: 562]}
Length = 195
Score = 28.0 bits (62), Expect = 1.6
Identities = 5/30 (16%), Positives = 14/30 (46%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
++ F++ +C HC + + + K+
Sbjct: 116 QVLEFFSFFCPHCYQFEEVLHISDNVKKKL 145
>d1f6da_ c.87.1.3 (A:) UDP-N-acetylglucosamine 2-epimerase
{Escherichia coli [TaxId: 562]}
Length = 376
Score = 28.4 bits (62), Expect = 1.6
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 49 KKKVRRQKNAEVKYVYENGNTKDKIIEFVRN 79
K + Q + Y +G +I+E ++N
Sbjct: 341 KDENEYQAMSRAHNPYGDGQACSRILEALKN 371
>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5
{Haemophilus influenzae [TaxId: 727]}
Length = 74
Score = 26.1 bits (57), Expect = 2.2
Identities = 6/15 (40%), Positives = 7/15 (46%)
Query: 121 VMFYAPWCGHCKKLK 135
+F P C C K K
Sbjct: 8 SIFTKPGCPFCAKAK 22
>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia
coli [TaxId: 562]}
Length = 76
Score = 25.8 bits (56), Expect = 2.5
Identities = 4/20 (20%), Positives = 7/20 (35%)
Query: 120 LVMFYAPWCGHCKKLKPEYE 139
+ ++ C C K E
Sbjct: 3 ITIYTRNDCVQCHATKRAME 22
>d1ejxb_ b.85.3.1 (B:) Urease, beta-subunit {Klebsiella aerogenes
[TaxId: 28451]}
Length = 101
Score = 26.1 bits (58), Expect = 2.6
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 11/48 (22%)
Query: 271 AAVDVTREKSLGKRFDIKGFPTLKYFRAG-SVAFDAGHLRDASRLVEF 317
A+ R+++ G R +I AG +V F+ G R+ LV F
Sbjct: 47 PALKFDRQQAAGYRLNIP---------AGTAVRFEPGQKREVE-LVAF 84
>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig
(Sus scrofa) [TaxId: 9823]}
Length = 105
Score = 26.2 bits (57), Expect = 2.6
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 121 VMFYAPWCGHCKKLK 135
V+F P C C+K +
Sbjct: 15 VVFIKPTCPFCRKTQ 29
>d1smyc_ e.29.1.1 (C:) RNA-polymerase beta {Thermus thermophilus
[TaxId: 274]}
Length = 1119
Score = 27.8 bits (61), Expect = 2.7
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 31 LIERLTEKADPVCTREKAKKKVRRQKN 57
L E LT K+D + R A + + + ++
Sbjct: 1049 LQEMLTLKSDDIEGRNAAYEAIIKGED 1075
>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)
{Escherichia coli [TaxId: 562]}
Length = 85
Score = 25.8 bits (56), Expect = 3.3
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 121 VMFYAPWCGHCKKLK 135
V+F C +C + K
Sbjct: 4 VIFGRSGCPYCVRAK 18
>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA)
{Escherichia coli [TaxId: 562]}
Length = 188
Score = 26.5 bits (57), Expect = 4.0
Identities = 5/30 (16%), Positives = 14/30 (46%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQ 148
++ F++ +C HC + + + K+
Sbjct: 21 QVLEFFSFFCPHCYQFEEVLHISDNVKKKL 50
>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA)
{Vibrio cholerae [TaxId: 666]}
Length = 181
Score = 26.2 bits (56), Expect = 6.2
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 119 VLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYY 152
V+ F++ +C HC +P + + + +
Sbjct: 21 VVSEFFSFYCPHCNTFEPIIAQLKQQLPEGAKFQ 54
>d1vloa1 b.44.2.1 (A:278-367) Glycine cleavage system T protein,
GcvT {Escherichia coli [TaxId: 562]}
Length = 90
Score = 24.8 bits (54), Expect = 7.1
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 250 GKRIKSINSGSFSPRQITGI-LAAVDVTREKSLGKRFDIK 288
+ I SG+FSP I LA V + +G+ ++
Sbjct: 29 NQHEGIITSGTFSPTLGYSIALARVP----EGIGETAIVQ 64
>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi
(Humicola insolens) [TaxId: 34413]}
Length = 133
Score = 25.3 bits (55), Expect = 7.2
Identities = 6/71 (8%), Positives = 22/71 (30%), Gaps = 1/71 (1%)
Query: 101 VVHLTDDNFDLVIQEESSVLVMFYAPWCGHCKKLKPEYEEAAATMKQQRAYYGMGMLRHR 160
+ + + + + + +F K+L + + A + + +
Sbjct: 8 IGEIGPETYSDYMSAGIPLAYIFAET-AEERKELSDKLKPIAEAQRGVINFGTIDAKAFG 66
Query: 161 PQASNVAVVSS 171
A N+ + +
Sbjct: 67 AHAGNLNLKTD 77
>d1ewfa2 d.83.1.1 (A:218-456) Bactericidal permeability-increasing
protein, BPI {Human (Homo sapiens) [TaxId: 9606]}
Length = 239
Score = 26.0 bits (57), Expect = 7.6
Identities = 10/34 (29%), Positives = 12/34 (35%)
Query: 320 DPTEPPPPPPPEPAWAEEPSEVYHLGADNFASTL 353
PP PP A VY +D F +T
Sbjct: 16 HHNPPPFAPPVMEFPAAHDRMVYLGLSDYFFNTA 49
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.131 0.397
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,403,349
Number of extensions: 67308
Number of successful extensions: 259
Number of sequences better than 10.0: 1
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 83
Length of query: 366
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 279
Effective length of database: 1,213,086
Effective search space: 338450994
Effective search space used: 338450994
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.8 bits)