BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11100
(110 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P2L0|WDR35_HUMAN WD repeat-containing protein 35 OS=Homo sapiens GN=WDR35 PE=1 SV=3
Length = 1181
Score = 139 bits (350), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 65/102 (63%), Positives = 83/102 (81%), Gaps = 1/102 (0%)
Query: 1 MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTG-QVAAANVN 59
MF YLSKKI+IPNN K+ C++W++ QG+IA GG+DGLLKVLKL+T + + AA N
Sbjct: 1 MFFYLSKKISIPNNVKLQCVSWNKEQGFIACGGEDGLLKVLKLETQTDDAKLRGLAAPSN 60
Query: 60 LAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK 101
L+MNQ+L+GHSG V+ + WNEQY+KLT+SDE GLIIVWMLYK
Sbjct: 61 LSMNQTLEGHSGSVQVVTWNEQYQKLTTSDENGLIIVWMLYK 102
>sp|Q8BND3|WDR35_MOUSE WD repeat-containing protein 35 OS=Mus musculus GN=Wdr35 PE=2 SV=3
Length = 1181
Score = 138 bits (348), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 64/102 (62%), Positives = 85/102 (83%), Gaps = 1/102 (0%)
Query: 1 MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT-GKESTGQVAAANVN 59
MF YLSKKIA+PNN K+ C++W+++QG+IA GG+DGLLKVL+L+T +S + AA N
Sbjct: 1 MFFYLSKKIAVPNNVKLKCISWNKDQGFIACGGEDGLLKVLRLETQTDDSKLRGLAAPSN 60
Query: 60 LAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK 101
L+MNQ+L+GHSG V+ + WNEQY+KLT+SD+ GLIIVWMLYK
Sbjct: 61 LSMNQNLEGHSGAVQVVTWNEQYQKLTTSDQNGLIIVWMLYK 102
>sp|A6N6J5|WDR35_RAT WD repeat-containing protein 35 OS=Rattus norvegicus GN=Wdr35 PE=1
SV=1
Length = 1170
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 64/102 (62%), Positives = 85/102 (83%), Gaps = 1/102 (0%)
Query: 1 MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT-GKESTGQVAAANVN 59
MF YLSKKIA+PNN K+ C++W+++QG+IA GG+DGLLKVL+L+T +S + AA N
Sbjct: 1 MFFYLSKKIAVPNNVKLKCISWNKDQGFIACGGEDGLLKVLRLETQTDDSKLRGLAAPSN 60
Query: 60 LAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK 101
L+MNQ+L+GHSG V+ + WNEQY+KLT+SD+ GLIIVWMLYK
Sbjct: 61 LSMNQNLEGHSGAVQVVTWNEQYQKLTTSDQNGLIIVWMLYK 102
>sp|Q9JIL5|TULP4_MOUSE Tubby-related protein 4 OS=Mus musculus GN=Tulp4 PE=2 SV=1
Length = 1547
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 5 LSKKIAIPNNTKVN--CLAWHQNQGWIAVGGDDGLLKVLKLDTG---KESTGQVAAANVN 59
LS K +P + K C + +GW+A G G++ V + ST Q
Sbjct: 20 LSWKGRVPKSEKEKPVCRRRYYEEGWLATGNGRGVVGVTFTSSHCRRDRSTPQ------- 72
Query: 60 LAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK 101
+N +L+GH+ +V + WNE Y+KL + D G I VW+ Y+
Sbjct: 73 -RINFNLRGHNSEVVLVRWNEPYQKLATCDADGGIFVWIQYE 113
>sp|Q9NRJ4|TULP4_HUMAN Tubby-related protein 4 OS=Homo sapiens GN=TULP4 PE=2 SV=2
Length = 1543
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 5 LSKKIAIPNNTKVN--CLAWHQNQGWIAVGGDDGLLKVLKLDTG---KESTGQVAAANVN 59
LS K +P + K C + +GW+A G G++ V + ST Q
Sbjct: 20 LSWKGRVPKSEKEKPVCRRRYYEEGWLATGNGRGVVGVTFTSSHCRRDRSTPQ------- 72
Query: 60 LAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK 101
+N +L+GH+ +V + WNE Y+KL + D G I VW+ Y+
Sbjct: 73 -RINFNLRGHNSEVVLVRWNEPYQKLATCDADGGIFVWIQYE 113
>sp|O17468|HIRA_DROME Protein HIRA homolog OS=Drosophila melanogaster GN=Hira PE=1 SV=2
Length = 1047
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKE---STGQVAAANVNLAMNQSLQGHSGKV 73
VNC+ W QN +A G DD L+ + + G TG + + + +L+GH G V
Sbjct: 73 VNCVRWSQNGQNLASGSDDKLIMIWRKSAGSSGVFGTGGMQKNHESWKCFYTLRGHDGDV 132
Query: 74 RAIIWNEQYEKLTSSDETGLIIVW 97
+ W+ L S +I+W
Sbjct: 133 LDLAWSPNDVYLASCSIDNTVIIW 156
>sp|P38328|ARPC1_YEAST Actin-related protein 2/3 complex subunit 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ARC40 PE=1
SV=1
Length = 384
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 4 YLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVL 41
++SK I P + +NCL+WH N +A GG DG ++V
Sbjct: 143 WVSKHIKKPIKSTINCLSWHANGVLLAAGGTDGFMRVF 180
>sp|O74399|ERB1_SCHPO Ribosome biogenesis protein erb1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=erb1 PE=1 SV=2
Length = 740
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 16/83 (19%)
Query: 9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGK-------ESTGQVAAANVNL- 60
+ I + +V CL+ H + W+A GGDDG+L++ ++ TG+ +S G A N++
Sbjct: 378 VFIGHKGRVRCLSVHVSGNWLASGGDDGVLRIWEVMTGRCVWKCSLDSFGN--AHNIDSD 435
Query: 61 --AMNQSLQGHSGK---VRAIIW 78
A+N+SL HS K ++++ W
Sbjct: 436 EDAVNESLS-HSTKSSIIQSLAW 457
>sp|D3ZW91|POC1B_RAT POC1 centriolar protein homolog B OS=Rattus norvegicus GN=Poc1b
PE=2 SV=1
Length = 477
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 14/81 (17%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
VNCL++H + + DG +K+L L G+ + +LQGH+G V +
Sbjct: 231 VNCLSFHPSGNSLVTASSDGTVKILDLVEGR--------------LIYTLQGHTGPVFTV 276
Query: 77 IWNEQYEKLTSSDETGLIIVW 97
+++ E TS ++VW
Sbjct: 277 SFSKDGELFTSGGADAQVLVW 297
>sp|Q96MR6|WDR65_HUMAN WD repeat-containing protein 65 OS=Homo sapiens GN=WDR65 PE=1 SV=3
Length = 1250
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 65 SLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWML 99
SL+GH+GK+R+I+WN KL S G + W L
Sbjct: 507 SLKGHTGKIRSIVWNADDSKLISGGTDGAVYEWNL 541
>sp|O74319|TAF73_SCHPO Transcription initiation factor TFIID subunit taf73
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf73 PE=1 SV=1
Length = 642
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 14/96 (14%)
Query: 8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQ 67
++ + + V+C+++H N ++A G D ++ + TG G V N
Sbjct: 481 RVFVGHQNDVDCVSFHPNAAYLATGSSDHTTRMWDVRTG----GTVRVFN---------- 526
Query: 68 GHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCN 103
H V A+ + L S+DE+G+I VW L N
Sbjct: 527 AHHSPVSALCMSADGLSLASADESGIIKVWDLRSSN 562
>sp|Q9LXN4|HIRA_ARATH Protein HIRA OS=Arabidopsis thaliana GN=HIRA PE=1 SV=2
Length = 1024
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKEST--GQVAAANV-NLAMNQSLQGHSGKV 73
VNC+ W +N ++A G DD ++++ + G +T G A +V N +L+GH+ V
Sbjct: 69 VNCVRWAKNSRYVASGSDDQVIQIHERKPGSGTTEFGSGEAPDVENWKAVMTLRGHTADV 128
Query: 74 RAIIWNEQYEKLTSSDETGLIIVW 97
+ W+ L S + +W
Sbjct: 129 VDLNWSPDDSMLASGSLDNTVHIW 152
>sp|Q8QFR2|HIRA_XENLA Protein HIRA OS=Xenopus laevis GN=hira PE=1 SV=2
Length = 1013
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQS------LQGHS 70
VNC+ W N ++A GGDD L+ V K +G V ++ LA + L+ HS
Sbjct: 73 VNCVRWSNNGAYLASGGDDKLIMVWK-RSGYIGPSTVFGSSSKLANVEQWRCLSILRSHS 131
Query: 71 GKVRAIIWNEQYEKLTSSDETGLIIVW 97
G V + W+ L S +++W
Sbjct: 132 GDVMDVAWSPHDAWLASCSVDNTVVIW 158
>sp|P54198|HIRA_HUMAN Protein HIRA OS=Homo sapiens GN=HIRA PE=1 SV=2
Length = 1017
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT--GKE----STGQVAAANVNLAMNQS-LQGH 69
VNC+ W + ++A GGDD L+ V K T G S+G++ ANV S L+ H
Sbjct: 73 VNCVRWSNSGMYLASGGDDKLIMVWKRATYIGPSTVFGSSGKL--ANVEQWRCVSILRNH 130
Query: 70 SGKVRAIIWNEQYEKLTSSDETGLIIVW 97
SG V + W+ L S +++W
Sbjct: 131 SGDVMDVAWSPHDAWLASCSVDNTVVIW 158
>sp|Q8BHD1|POC1B_MOUSE POC1 centriolar protein homolog B OS=Mus musculus GN=Poc1b PE=1
SV=1
Length = 476
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 14/81 (17%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
VNCL++H + DG +K+L L G+ + +LQGH+G V +
Sbjct: 231 VNCLSFHPLGNSLVTASSDGTVKMLDLIEGR--------------LIYTLQGHTGPVFTV 276
Query: 77 IWNEQYEKLTSSDETGLIIVW 97
+++ E LTS +++W
Sbjct: 277 SFSKDGELLTSGGADAQVLIW 297
>sp|Q61666|HIRA_MOUSE Protein HIRA OS=Mus musculus GN=Hira PE=1 SV=3
Length = 1015
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT--GKE----STGQVAAANVNLAMNQS-LQGH 69
VNC+ W + ++A GGDD L+ V K T G S+G++ ANV S L+ H
Sbjct: 73 VNCVRWSNSGMYLASGGDDKLIMVWKRATYIGPSTVFGSSGKL--ANVEQWRCVSILRSH 130
Query: 70 SGKVRAIIWNEQYEKLTSSDETGLIIVW 97
SG V + W+ L S +++W
Sbjct: 131 SGDVMDVAWSPHDAWLASCSVDNTVVIW 158
>sp|P49177|GBB_ARATH Guanine nucleotide-binding protein subunit beta OS=Arabidopsis
thaliana GN=GB1 PE=1 SV=1
Length = 377
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 52 QVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 97
+V+ +L ++LQGH+GKV ++ W + ++ S+ + G +IVW
Sbjct: 47 RVSFGATDLVCCRTLQGHTGKVYSLDWTPERNRIVSASQDGRLIVW 92
>sp|Q5RD06|POC1B_PONAB POC1 centriolar protein homolog B OS=Pongo abelii GN=POC1B PE=2
SV=1
Length = 451
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 14/81 (17%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
VNC+++H + ++ DG LK+L L G+ + +LQGH+G V +
Sbjct: 231 VNCISFHPSDNYLVTASSDGTLKILDLLEGR--------------LIYTLQGHTGPVFTV 276
Query: 77 IWNEQYEKLTSSDETGLIIVW 97
+++ E S +++W
Sbjct: 277 SFSKGGELFASGGADTQVLLW 297
>sp|P79987|HIRA_CHICK Protein HIRA OS=Gallus gallus GN=HIRA PE=1 SV=2
Length = 1019
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT--GKESTGQVAAANVNLAMNQS---LQGHSG 71
VNC+ W N ++A GGDD L+ V K G + ++ N+ + L+ HSG
Sbjct: 73 VNCVRWSNNGVYLASGGDDKLIMVWKRAAYIGPSTVFGSSSKLTNVEQWRCVSILRSHSG 132
Query: 72 KVRAIIWNEQYEKLTSSDETGLIIVW 97
V + W+ L S +++W
Sbjct: 133 DVMDVAWSPHDAWLASCSVDNTVVIW 158
>sp|Q9D180|WDR65_MOUSE WD repeat-containing protein 65 OS=Mus musculus GN=Wdr65 PE=2 SV=3
Length = 1249
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 57 NVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWML 99
N+N+ L+GH+GK+R+++WN KL S+ G + W L
Sbjct: 503 NINI-----LKGHTGKIRSLVWNLDDSKLVSAGTDGAVYEWNL 540
>sp|Q8TC44|POC1B_HUMAN POC1 centriolar protein homolog B OS=Homo sapiens GN=POC1B PE=1
SV=1
Length = 478
Score = 36.6 bits (83), Expect = 0.041, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 14/81 (17%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
VNC+++H + ++ DG LK+L L G+ + +LQGH+G V +
Sbjct: 231 VNCISFHPSGNYLITASSDGTLKILDLLEGR--------------LIYTLQGHTGPVFTV 276
Query: 77 IWNEQYEKLTSSDETGLIIVW 97
+++ E S +++W
Sbjct: 277 SFSKGGELFASGGADTQVLLW 297
>sp|P49178|GBB_MAIZE Guanine nucleotide-binding protein subunit beta OS=Zea mays
GN=GB1 PE=2 SV=1
Length = 380
Score = 36.6 bits (83), Expect = 0.052, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 40 VLKLDTGKESTGQ----VAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLII 95
+L D + S Q V+ +L ++LQGHSGKV ++ W + + S+ + G +I
Sbjct: 32 LLDTDVARYSKSQGRVPVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLI 91
Query: 96 VW 97
VW
Sbjct: 92 VW 93
>sp|O42611|HIRA_TAKRU Protein HIRA OS=Takifugu rubripes GN=hira PE=2 SV=1
Length = 1025
Score = 36.2 bits (82), Expect = 0.055, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQ-----SLQGHSG 71
VNC+ W N ++A GGDD L+ V K + ++N + Q L+ H+G
Sbjct: 73 VNCVRWSNNGLYLASGGDDKLVMVWKRAALIGPSTVFGSSNKLANVEQWRCVTILRNHTG 132
Query: 72 KVRAIIWNEQYEKLTSSDETGLIIVW 97
V + W+ L S I++W
Sbjct: 133 DVMDVSWSPHDVWLASCSVDNTIVIW 158
>sp|P93563|GBB_SOLTU Guanine nucleotide-binding protein subunit beta OS=Solanum
tuberosum GN=GB1 PE=2 SV=1
Length = 377
Score = 36.2 bits (82), Expect = 0.064, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 47 KESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 97
++ V +L + LQGH+GKV ++ W + ++ S+ + G +IVW
Sbjct: 42 RQGKSPVTFGPTDLVCCRILQGHTGKVYSLDWTPEKNRIVSASQDGRLIVW 92
>sp|P93339|GBB_NICPL Guanine nucleotide-binding protein subunit beta OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 377
Score = 36.2 bits (82), Expect = 0.067, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 66 LQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 97
LQGH+GKV ++ W + ++ S+ + G +IVW
Sbjct: 61 LQGHTGKVYSLDWTPEKNRIVSASQDGRLIVW 92
>sp|Q652L2|HIRA_ORYSJ Protein HIRA OS=Oryza sativa subsp. japonica GN=Os09g0567700 PE=2
SV=1
Length = 975
Score = 36.2 bits (82), Expect = 0.068, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKV--LKLDTGKESTGQVAAANV-NLAMNQSLQGHSGKV 73
VNC+ W + ++A G DD ++++ K TG G +V N + +L+GH+ V
Sbjct: 69 VNCVRWAHHGRYLASGSDDQVIQIHERKAGTGTSEFGSGEPPDVENWKVVMTLRGHTADV 128
Query: 74 RAIIWNEQYEKLTSSDETGLIIVWML 99
+ W+ L S + +W +
Sbjct: 129 VDLNWSPDDSTLASGSLDNTVHIWSM 154
>sp|P93397|GBB1_TOBAC Guanine nucleotide-binding protein subunit beta-1 OS=Nicotiana
tabacum PE=1 SV=1
Length = 377
Score = 35.8 bits (81), Expect = 0.071, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 66 LQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 97
LQGH+GKV ++ W + ++ S+ + G +IVW
Sbjct: 61 LQGHTGKVYSLDWTPEKNRIVSASQDGRLIVW 92
>sp|P93398|GBB2_TOBAC Guanine nucleotide-binding protein subunit beta-2 OS=Nicotiana
tabacum PE=2 SV=1
Length = 377
Score = 35.8 bits (81), Expect = 0.072, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 66 LQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 97
LQGH+GKV ++ W + ++ S+ + G +IVW
Sbjct: 61 LQGHTGKVYSLDWTPEKNRIVSASQDGRLIVW 92
>sp|Q40687|GBB_ORYSJ Guanine nucleotide-binding protein subunit beta OS=Oryza sativa
subsp. japonica GN=Os03g0669200 PE=1 SV=1
Length = 380
Score = 35.8 bits (81), Expect = 0.074, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 59 NLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 97
+L ++LQGHSGKV ++ W + + S+ + G +IVW
Sbjct: 55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVW 93
>sp|F6ZT52|POC1B_XENTR POC1 centriolar protein homolog B OS=Xenopus tropicalis GN=poc1b
PE=2 SV=1
Length = 470
Score = 35.8 bits (81), Expect = 0.076, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 14/85 (16%)
Query: 13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGK 72
+N VN L++H + ++ +DG +K+L L G+ + +L GH G
Sbjct: 227 HNAGVNSLSFHPSGNYLLTASNDGTVKILDLLEGR--------------LIYTLHGHQGP 272
Query: 73 VRAIIWNEQYEKLTSSDETGLIIVW 97
V ++ +++ ++ S ++VW
Sbjct: 273 VLSVAFSKSGDQFASGATDAQVLVW 297
>sp|Q40507|GBB3_TOBAC Guanine nucleotide-binding protein subunit beta OS=Nicotiana
tabacum PE=2 SV=1
Length = 375
Score = 35.8 bits (81), Expect = 0.076, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 66 LQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 97
LQGH+GKV ++ W + ++ S+ + G +IVW
Sbjct: 61 LQGHTGKVYSLDWTPEKNRIVSASQDGRLIVW 92
>sp|Q7ZX22|WDR24_XENLA WD repeat-containing protein 24 OS=Xenopus laevis GN=wdr24 PE=2
SV=1
Length = 780
Score = 35.8 bits (81), Expect = 0.090, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 7 KKIAIPNNTKVNCLAWH-QNQGWIAVGGDDGLLKVLKLDTGK 47
+++ +N V C WH +++GW+A GG D ++KV ++T +
Sbjct: 195 ERMFTAHNGPVFCCDWHPEDRGWLATGGRDKMVKVWDMNTNR 236
>sp|Q80ZK9|WDTC1_MOUSE WD and tetratricopeptide repeats protein 1 OS=Mus musculus
GN=Wdtc1 PE=1 SV=1
Length = 677
Score = 35.4 bits (80), Expect = 0.094, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 60 LAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 97
L + LQGHSG V + WNE+ + L S + IVW
Sbjct: 37 LGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVW 74
>sp|Q8N5D0|WDTC1_HUMAN WD and tetratricopeptide repeats protein 1 OS=Homo sapiens
GN=WDTC1 PE=1 SV=2
Length = 677
Score = 35.4 bits (80), Expect = 0.094, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%)
Query: 60 LAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 97
L + LQGHSG V + WNE+ + L S + IVW
Sbjct: 37 LGLEAELQGHSGCVNCLEWNEKGDLLASGSDDQHTIVW 74
>sp|A2RRH5|WDR27_HUMAN WD repeat-containing protein 27 OS=Homo sapiens GN=WDR27 PE=2 SV=3
Length = 827
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 14/88 (15%)
Query: 10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH 69
A P T+V C+ + + W+A G + LL L D T V GH
Sbjct: 509 AAPTCTRVCCIQYSGDGQWLACGLANHLL--LVFDASLTGTPAV------------FSGH 554
Query: 70 SGKVRAIIWNEQYEKLTSSDETGLIIVW 97
G V A+ W++ L S+ G + +W
Sbjct: 555 DGAVNAVCWSQDRRWLLSAARDGTLRMW 582
>sp|P14197|AAC3_DICDI WD repeat-containing protein AAC3 OS=Dictyostelium discoideum
GN=AAC3 PE=2 SV=2
Length = 478
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
Query: 2 FIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLD-------TGKESTGQVA 54
F S K I N K +AW+ N IA G DG+++V D +
Sbjct: 153 FSECSTKDFIGNKKKSTSVAWNANGTKIASSGSDGIVRVWNFDPLGNSNNNNNSNNTSSN 212
Query: 55 AANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLII-VW 97
+ N N+ L+GH G + I W+ + L +S T +I +W
Sbjct: 213 SKNNNIKETIELKGHDGSIEKISWSPKNNDLLASAGTDKVIKIW 256
>sp|Q7ZUV2|KTNB1_DANRE Katanin p80 WD40 repeat-containing subunit B1 OS=Danio rerio
GN=katnb1 PE=2 SV=1
Length = 694
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGK---ESTGQVAAAN-VNLAMNQSLQGHSGK 72
V CLA+ + W+A DD +K+ L GK E T +A N V N+ L
Sbjct: 150 VRCLAFSPDGKWLASASDDSTVKLWDLIAGKMITEFTSHTSAVNVVQFHPNEYLLASGSA 209
Query: 73 VRAI-IWN-EQYEKLTSSD-ETGLI 94
R + +W+ E++ + SS+ ETG++
Sbjct: 210 DRTVKLWDLEKFNMIGSSEGETGVV 234
>sp|Q08706|GBB_LYMST Guanine nucleotide-binding protein subunit beta OS=Lymnaea
stagnalis PE=2 SV=1
Length = 341
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 50 TGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCN 103
+G A + + ++L+GH K+ A+ W L S+ + G +IVW Y N
Sbjct: 36 SGVEAVGRIQMRTRRTLRGHLAKIYAMHWASDSRNLVSASQDGKLIVWDGYTTN 89
>sp|Q9I9H8|APAF_DANRE Apoptotic protease-activating factor 1 OS=Danio rerio GN=apaf1 PE=2
SV=1
Length = 1261
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 14/84 (16%)
Query: 14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKV 73
++++ C +N ++A+G +DG ++V+++ + K S L GH+ V
Sbjct: 966 SSRIRCSCISRNAAFVALGSEDGTVQVIEVPSSKASV--------------KLSGHTKTV 1011
Query: 74 RAIIWNEQYEKLTSSDETGLIIVW 97
+ + E L +S E I VW
Sbjct: 1012 HHCQFTDDCEILITSSEDSTIRVW 1035
>sp|Q4V7Z1|POC1B_XENLA POC1 centriolar protein homolog B OS=Xenopus laevis GN=poc1b PE=1
SV=1
Length = 468
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 14/85 (16%)
Query: 13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGK 72
+N V+ L++H + ++ DG LK+L L G+ + +L GH G
Sbjct: 227 HNAGVSSLSFHPSGNYLLTASSDGTLKILDLLEGR--------------LIYTLHGHQGP 272
Query: 73 VRAIIWNEQYEKLTSSDETGLIIVW 97
V ++ +++ ++ S ++VW
Sbjct: 273 VLSVTFSKSGDQFASGATDAQVLVW 297
>sp|Q5ZMV9|WDR24_CHICK WD repeat-containing protein 24 OS=Gallus gallus GN=WDR24 PE=2 SV=1
Length = 705
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 7 KKIAIPNNTKVNCLAWH-QNQGWIAVGGDDGLLKVLKLDTGK 47
+++ +N V C WH +++GW+A GG D ++KV ++T +
Sbjct: 116 ERMFTAHNGPVFCCDWHPEDRGWLATGGRDKMVKVWDMNTTR 157
>sp|Q96S15|WDR24_HUMAN WD repeat-containing protein 24 OS=Homo sapiens GN=WDR24 PE=1 SV=1
Length = 920
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 7 KKIAIPNNTKVNCLAWH-QNQGWIAVGGDDGLLKVLKLDTGK 47
+++ +N V C WH +++GW+A GG D ++KV + T +
Sbjct: 330 ERMFTAHNGPVFCCDWHPEDRGWLATGGRDKMVKVWDMTTHR 371
>sp|Q6NLV4|FY_ARATH Flowering time control protein FY OS=Arabidopsis thaliana GN=FY
PE=1 SV=1
Length = 647
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 15/81 (18%)
Query: 20 LAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWN 79
+ W+QN W+ D ++K+ + T KE QS +GH+ V ++ W+
Sbjct: 297 VKWNQNGNWLLTASKDQIIKLYDIRTMKEL--------------QSFRGHTKDVTSLAWH 342
Query: 80 EQYEK-LTSSDETGLIIVWML 99
+E+ S G I W++
Sbjct: 343 PCHEEYFVSGSSDGSICHWIV 363
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 14/81 (17%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V + WH + + GG D L+K+ +G+E SL GH V ++
Sbjct: 252 VKSVDWHPTKSLLVSGGKDQLVKLWDTRSGRELC--------------SLHGHKNIVLSV 297
Query: 77 IWNEQYEKLTSSDETGLIIVW 97
WN+ L ++ + +I ++
Sbjct: 298 KWNQNGNWLLTASKDQIIKLY 318
>sp|Q8CFJ9|WDR24_MOUSE WD repeat-containing protein 24 OS=Mus musculus GN=Wdr24 PE=2 SV=1
Length = 790
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 7 KKIAIPNNTKVNCLAWH-QNQGWIAVGGDDGLLKVLKLDTGK 47
+++ +N V C WH +++GW+A GG D ++KV + T +
Sbjct: 200 ERMFTAHNGPVFCCDWHPEDRGWLATGGRDKMVKVWDMTTHR 241
>sp|O45040|GBB1_HOMAM Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
OS=Homarus americanus GN=GBETA1 PE=2 SV=1
Length = 340
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 43 LDTG--KESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLY 100
LDT + + G + + ++L+GH K+ A+ W L S+ + G +IVW Y
Sbjct: 26 LDTTLVQATAGMDPIGRIQMRTRRTLRGHLAKIYAMHWGSDSRNLVSASQDGKLIVWDSY 85
Query: 101 KCN 103
N
Sbjct: 86 TTN 88
>sp|A6RRD4|ERB1_BOTFB Ribosome biogenesis protein erb1 OS=Botryotinia fuckeliana (strain
B05.10) GN=erb1 PE=3 SV=1
Length = 763
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKE----STGQVAAANV 58
++ +V LA + W+A GGDDG ++V +L TGK+ G A NV
Sbjct: 415 HDGRVRSLAIDPSGTWLATGGDDGTVRVWELLTGKQLWSAQIGDEEAVNV 464
>sp|Q5RF24|WDR13_PONAB WD repeat-containing protein 13 OS=Pongo abelii GN=WDR13 PE=2 SV=1
Length = 485
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 52 QVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 97
+ A A VN LQGHS V + +N L SSD +G++IVW
Sbjct: 440 RAAKAAVN-----KLQGHSAPVLDVSFNCDESLLASSDASGMVIVW 480
>sp|Q6DKP5|WDR13_PANTR WD repeat-containing protein 13 OS=Pan troglodytes GN=WDR13 PE=3
SV=1
Length = 485
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 52 QVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 97
+ A A VN LQGHS V + +N L SSD +G++IVW
Sbjct: 440 RAAKAAVN-----KLQGHSAPVLDVSFNCDESLLASSDASGMVIVW 480
>sp|Q91V09|WDR13_MOUSE WD repeat-containing protein 13 OS=Mus musculus GN=Wdr13 PE=1 SV=1
Length = 485
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 52 QVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 97
+ A A VN LQGHS V + +N L SSD +G++IVW
Sbjct: 440 RAAKAAVN-----KLQGHSAPVLDVSFNCDESLLASSDASGMVIVW 480
>sp|Q9H1Z4|WDR13_HUMAN WD repeat-containing protein 13 OS=Homo sapiens GN=WDR13 PE=1 SV=2
Length = 485
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 52 QVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 97
+ A A VN LQGHS V + +N L SSD +G++IVW
Sbjct: 440 RAAKAAVN-----KLQGHSAPVLDVSFNCDESLLASSDASGMVIVW 480
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,713,944
Number of Sequences: 539616
Number of extensions: 1480775
Number of successful extensions: 5242
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 231
Number of HSP's that attempted gapping in prelim test: 4599
Number of HSP's gapped (non-prelim): 829
length of query: 110
length of database: 191,569,459
effective HSP length: 78
effective length of query: 32
effective length of database: 149,479,411
effective search space: 4783341152
effective search space used: 4783341152
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)