Query psy11100
Match_columns 110
No_of_seqs 107 out of 1261
Neff 10.7
Searched_HMMs 46136
Date Fri Aug 16 17:59:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11100.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11100hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271|consensus 99.8 1.9E-19 4.1E-24 115.6 8.4 80 12-105 113-192 (480)
2 KOG0263|consensus 99.8 3E-18 6.6E-23 117.0 9.2 89 8-110 529-617 (707)
3 KOG0272|consensus 99.8 2.3E-18 4.9E-23 111.4 7.6 83 12-108 301-383 (459)
4 KOG0263|consensus 99.7 4.6E-17 9.9E-22 111.4 8.8 83 6-102 569-651 (707)
5 KOG0266|consensus 99.7 1.2E-15 2.7E-20 102.8 11.2 82 9-104 241-322 (456)
6 KOG0266|consensus 99.7 7.9E-16 1.7E-20 103.7 9.8 84 11-108 200-284 (456)
7 KOG0271|consensus 99.7 3.4E-16 7.4E-21 100.8 7.3 83 12-108 365-447 (480)
8 KOG0291|consensus 99.6 1.5E-15 3.3E-20 104.4 9.6 83 12-108 348-430 (893)
9 KOG0265|consensus 99.6 2.2E-15 4.9E-20 94.4 9.4 86 11-109 44-129 (338)
10 KOG0272|consensus 99.6 7.8E-17 1.7E-21 104.4 3.0 83 12-108 259-341 (459)
11 PTZ00421 coronin; Provisional 99.6 6.1E-15 1.3E-19 100.1 10.9 83 11-107 122-205 (493)
12 PTZ00421 coronin; Provisional 99.6 1.9E-14 4.2E-19 97.6 10.6 90 11-107 72-163 (493)
13 KOG0295|consensus 99.6 3.6E-14 7.9E-19 90.9 9.7 86 9-108 272-372 (406)
14 KOG0279|consensus 99.6 2.2E-14 4.8E-19 89.2 8.4 81 13-107 147-229 (315)
15 KOG0318|consensus 99.6 4.5E-14 9.8E-19 94.0 10.1 83 12-108 188-273 (603)
16 KOG0275|consensus 99.6 3E-15 6.4E-20 95.3 4.3 99 5-109 204-302 (508)
17 KOG0645|consensus 99.6 1.2E-13 2.7E-18 85.7 10.4 81 10-102 57-137 (312)
18 KOG1273|consensus 99.5 2.1E-14 4.6E-19 90.9 6.6 79 17-109 26-104 (405)
19 KOG0285|consensus 99.5 7.5E-14 1.6E-18 89.7 8.9 86 9-108 146-231 (460)
20 KOG0319|consensus 99.5 7.9E-14 1.7E-18 95.7 9.4 85 10-108 501-585 (775)
21 KOG0286|consensus 99.5 9E-14 1.9E-18 87.1 8.8 82 10-105 182-264 (343)
22 KOG0315|consensus 99.5 8.3E-14 1.8E-18 85.8 8.5 83 11-108 80-162 (311)
23 KOG0316|consensus 99.5 5.7E-14 1.2E-18 86.0 7.7 87 9-109 12-98 (307)
24 KOG0289|consensus 99.5 5.2E-14 1.1E-18 92.0 7.8 78 15-106 348-425 (506)
25 KOG0284|consensus 99.5 1.9E-14 4E-19 93.4 5.7 83 12-108 178-260 (464)
26 PTZ00420 coronin; Provisional 99.5 2.2E-13 4.7E-18 93.6 10.9 89 11-105 71-161 (568)
27 KOG0264|consensus 99.5 1.4E-13 3E-18 89.8 9.1 79 10-101 268-348 (422)
28 PTZ00420 coronin; Provisional 99.5 3.1E-13 6.8E-18 92.8 10.8 83 11-108 122-205 (568)
29 KOG0315|consensus 99.5 3.2E-13 6.9E-18 83.3 9.4 84 11-107 212-295 (311)
30 KOG0279|consensus 99.5 3E-13 6.5E-18 84.3 9.0 80 9-102 58-137 (315)
31 KOG0273|consensus 99.5 3.3E-13 7.2E-18 88.9 9.0 98 11-108 356-490 (524)
32 KOG0282|consensus 99.5 1.4E-14 2.9E-19 95.4 2.0 85 11-108 211-296 (503)
33 KOG0275|consensus 99.5 6E-14 1.3E-18 89.5 4.6 88 8-109 300-387 (508)
34 KOG2041|consensus 99.5 4.7E-13 1E-17 92.6 9.1 109 1-109 1-110 (1189)
35 KOG0285|consensus 99.5 3.6E-13 7.8E-18 86.6 7.8 84 10-107 231-314 (460)
36 KOG0319|consensus 99.5 2.4E-13 5.2E-18 93.3 7.1 86 9-108 458-543 (775)
37 KOG0283|consensus 99.4 4.1E-13 9E-18 92.8 7.5 80 10-105 365-445 (712)
38 KOG0292|consensus 99.4 4E-13 8.7E-18 94.3 7.5 81 12-106 49-129 (1202)
39 KOG0645|consensus 99.4 3.7E-12 8E-17 79.3 10.6 82 8-100 99-180 (312)
40 KOG0286|consensus 99.4 3.3E-12 7.1E-17 80.2 10.4 84 5-102 46-129 (343)
41 KOG0640|consensus 99.4 5E-13 1.1E-17 84.7 6.9 98 12-109 110-211 (430)
42 KOG0973|consensus 99.4 1.1E-12 2.4E-17 92.8 9.2 95 12-106 67-165 (942)
43 KOG0318|consensus 99.4 1.3E-12 2.7E-17 87.3 8.8 83 9-104 482-564 (603)
44 KOG0276|consensus 99.4 1.1E-12 2.4E-17 89.2 8.7 90 6-109 132-224 (794)
45 KOG1407|consensus 99.4 5.1E-13 1.1E-17 82.7 6.2 84 12-109 187-270 (313)
46 KOG0284|consensus 99.4 5.3E-13 1.1E-17 86.7 6.0 84 10-107 218-301 (464)
47 KOG0302|consensus 99.4 1.2E-12 2.7E-17 84.5 7.5 85 8-104 251-336 (440)
48 KOG1034|consensus 99.4 1.7E-12 3.6E-17 82.6 7.9 84 10-107 131-218 (385)
49 KOG0273|consensus 99.4 1.1E-12 2.5E-17 86.5 7.4 79 14-107 235-313 (524)
50 KOG0293|consensus 99.4 2.3E-12 5.1E-17 84.1 8.7 89 10-109 220-308 (519)
51 cd00200 WD40 WD40 domain, foun 99.4 6.5E-12 1.4E-16 77.9 10.5 81 12-106 7-87 (289)
52 KOG0296|consensus 99.4 4E-12 8.7E-17 81.7 9.1 86 9-108 59-144 (399)
53 KOG0264|consensus 99.4 6.1E-12 1.3E-16 82.3 8.9 90 12-101 314-405 (422)
54 KOG2394|consensus 99.4 1.2E-12 2.7E-17 87.6 5.2 78 14-105 290-367 (636)
55 KOG1445|consensus 99.4 1.1E-12 2.4E-17 89.7 5.0 81 9-103 672-753 (1012)
56 KOG0643|consensus 99.4 1E-11 2.3E-16 77.3 8.7 87 9-109 5-91 (327)
57 KOG0282|consensus 99.4 2.3E-12 5E-17 85.1 6.1 88 8-110 252-340 (503)
58 KOG0265|consensus 99.3 8.5E-12 1.8E-16 78.6 8.1 84 10-107 86-170 (338)
59 KOG1009|consensus 99.3 8.4E-12 1.8E-16 81.1 8.3 96 11-106 62-159 (434)
60 KOG0647|consensus 99.3 9.3E-12 2E-16 78.5 8.1 81 12-104 25-106 (347)
61 KOG0291|consensus 99.3 8.7E-12 1.9E-16 86.3 8.6 83 8-104 472-554 (893)
62 KOG0302|consensus 99.3 1.6E-11 3.4E-16 79.5 9.0 86 11-107 299-385 (440)
63 KOG0772|consensus 99.3 4.6E-12 1E-16 84.7 6.5 81 12-103 315-397 (641)
64 KOG0316|consensus 99.3 1.3E-11 2.9E-16 75.8 7.9 81 9-103 54-134 (307)
65 KOG0303|consensus 99.3 3.4E-12 7.3E-17 82.9 5.5 90 12-108 79-170 (472)
66 KOG0305|consensus 99.3 1E-11 2.2E-16 83.5 7.6 84 10-107 297-383 (484)
67 KOG0640|consensus 99.3 5.8E-12 1.3E-16 80.0 6.1 90 4-107 251-342 (430)
68 PLN00181 protein SPA1-RELATED; 99.3 2.9E-11 6.3E-16 86.4 10.3 80 13-106 531-612 (793)
69 KOG0310|consensus 99.3 1.8E-11 4E-16 80.9 8.6 84 11-108 107-193 (487)
70 KOG4283|consensus 99.3 1.1E-11 2.3E-16 78.3 7.2 95 8-105 182-281 (397)
71 KOG0295|consensus 99.3 2.6E-11 5.6E-16 78.1 8.9 88 8-109 187-274 (406)
72 KOG0647|consensus 99.3 3.2E-11 6.9E-16 76.1 9.1 80 12-106 70-151 (347)
73 KOG0269|consensus 99.3 6.8E-12 1.5E-16 86.8 6.5 82 11-105 173-255 (839)
74 KOG0973|consensus 99.3 1.7E-11 3.7E-16 87.0 8.6 82 6-101 121-202 (942)
75 KOG0639|consensus 99.3 5.5E-12 1.2E-16 84.3 5.3 77 17-107 512-588 (705)
76 KOG0292|consensus 99.3 1.6E-11 3.5E-16 86.5 7.8 94 5-110 197-290 (1202)
77 cd00200 WD40 WD40 domain, foun 99.3 1.1E-10 2.5E-15 72.3 10.6 83 12-108 133-215 (289)
78 KOG0294|consensus 99.3 4.2E-11 9E-16 76.0 8.3 79 12-104 81-161 (362)
79 KOG0303|consensus 99.3 1.6E-11 3.5E-16 79.8 6.3 83 10-107 127-210 (472)
80 KOG0296|consensus 99.3 3.9E-11 8.5E-16 77.2 7.7 81 15-109 149-229 (399)
81 KOG1446|consensus 99.3 1.7E-10 3.7E-15 72.9 10.2 93 13-105 13-135 (311)
82 KOG0267|consensus 99.2 1.4E-11 3.1E-16 84.9 5.7 87 9-109 107-193 (825)
83 KOG1274|consensus 99.2 9.2E-11 2E-15 82.5 9.6 94 8-101 132-263 (933)
84 KOG0276|consensus 99.2 2E-11 4.3E-16 83.3 6.1 80 11-104 180-261 (794)
85 PLN00181 protein SPA1-RELATED; 99.2 2.9E-10 6.2E-15 81.4 11.8 78 11-103 572-651 (793)
86 KOG0278|consensus 99.2 8.9E-11 1.9E-15 72.8 7.9 76 16-105 226-302 (334)
87 KOG0772|consensus 99.2 3.9E-11 8.4E-16 80.4 6.7 82 9-100 263-347 (641)
88 KOG1539|consensus 99.2 5.6E-11 1.2E-15 83.0 7.7 95 12-107 491-613 (910)
89 KOG0313|consensus 99.2 5.6E-11 1.2E-15 76.9 7.1 79 14-103 300-379 (423)
90 KOG0293|consensus 99.2 9.2E-11 2E-15 76.9 7.6 81 7-101 262-343 (519)
91 PF08662 eIF2A: Eukaryotic tra 99.2 3.1E-10 6.8E-15 69.0 9.3 76 13-105 99-183 (194)
92 KOG0277|consensus 99.2 1.5E-10 3.3E-15 71.8 7.7 76 12-101 102-179 (311)
93 KOG0277|consensus 99.2 3.2E-10 6.9E-15 70.4 9.0 81 9-103 142-224 (311)
94 KOG1446|consensus 99.2 6.4E-10 1.4E-14 70.4 10.5 82 12-107 185-269 (311)
95 KOG0646|consensus 99.2 4.4E-10 9.6E-15 74.2 9.9 46 64-109 269-316 (476)
96 KOG0283|consensus 99.2 1E-10 2.2E-15 81.2 7.3 79 12-105 407-486 (712)
97 PF08662 eIF2A: Eukaryotic tra 99.2 5.8E-10 1.3E-14 67.8 9.4 80 12-108 57-141 (194)
98 KOG0771|consensus 99.2 1.1E-10 2.3E-15 76.1 6.4 73 18-105 148-220 (398)
99 KOG0281|consensus 99.2 6.1E-11 1.3E-15 76.5 5.2 83 8-108 314-396 (499)
100 KOG0308|consensus 99.2 2.5E-10 5.3E-15 78.2 8.2 84 11-108 168-251 (735)
101 KOG3914|consensus 99.2 1.4E-10 3.1E-15 75.2 6.5 86 8-108 145-231 (390)
102 KOG2111|consensus 99.2 1.2E-09 2.6E-14 69.5 10.4 78 12-103 179-259 (346)
103 KOG0267|consensus 99.2 3.6E-11 7.8E-16 83.0 3.9 82 9-104 149-230 (825)
104 KOG0274|consensus 99.1 4.1E-10 8.8E-15 77.4 9.0 80 12-108 329-409 (537)
105 KOG2096|consensus 99.1 2.4E-10 5.3E-15 73.0 7.2 37 9-45 81-117 (420)
106 KOG1539|consensus 99.1 4.6E-10 9.9E-15 78.6 9.1 75 9-98 571-646 (910)
107 KOG0299|consensus 99.1 2.4E-10 5.3E-15 75.4 7.4 82 12-107 200-281 (479)
108 KOG2110|consensus 99.1 7.7E-10 1.7E-14 71.5 9.2 84 13-110 128-214 (391)
109 KOG0269|consensus 99.1 2.3E-10 5E-15 79.5 7.2 76 12-100 218-296 (839)
110 KOG0306|consensus 99.1 2.9E-10 6.2E-15 79.0 7.5 85 9-107 587-671 (888)
111 KOG0281|consensus 99.1 3.2E-10 7E-15 73.2 7.1 79 7-103 230-308 (499)
112 KOG0646|consensus 99.1 2.3E-10 5E-15 75.6 6.5 73 14-100 81-153 (476)
113 KOG0288|consensus 99.1 4E-10 8.7E-15 73.7 7.0 69 16-98 389-459 (459)
114 KOG0310|consensus 99.1 1.3E-09 2.7E-14 72.4 9.3 80 11-105 150-230 (487)
115 KOG0643|consensus 99.1 2E-09 4.4E-14 67.3 9.5 97 10-106 48-183 (327)
116 KOG4283|consensus 99.1 8.1E-10 1.8E-14 70.0 7.5 75 14-102 143-221 (397)
117 KOG2110|consensus 99.1 3E-09 6.5E-14 68.8 10.1 78 12-103 171-251 (391)
118 KOG0313|consensus 99.1 1.6E-09 3.5E-14 70.3 8.6 96 12-108 191-297 (423)
119 KOG0274|consensus 99.1 2.8E-09 6E-14 73.4 10.4 82 10-107 245-326 (537)
120 KOG0642|consensus 99.1 1.8E-09 3.9E-14 72.9 9.0 89 12-104 342-430 (577)
121 PF00400 WD40: WD domain, G-be 99.1 1.9E-09 4.1E-14 48.8 6.4 37 62-98 3-39 (39)
122 KOG0322|consensus 99.1 6.1E-10 1.3E-14 69.5 6.0 71 15-99 252-322 (323)
123 KOG1332|consensus 99.0 1.2E-09 2.5E-14 67.6 6.8 88 8-106 5-94 (299)
124 KOG1332|consensus 99.0 1.7E-09 3.7E-14 66.9 7.4 80 11-102 53-136 (299)
125 KOG0650|consensus 99.0 3.6E-09 7.8E-14 72.2 9.6 80 8-102 394-474 (733)
126 KOG0270|consensus 99.0 4.7E-10 1E-14 73.8 5.1 78 10-101 239-318 (463)
127 KOG1310|consensus 99.0 2.2E-09 4.7E-14 72.9 8.2 77 11-101 47-126 (758)
128 KOG0306|consensus 99.0 1.2E-09 2.5E-14 76.1 6.8 81 12-106 548-628 (888)
129 KOG0268|consensus 99.0 8.1E-10 1.8E-14 71.4 5.7 76 9-100 267-345 (433)
130 KOG0294|consensus 99.0 3.4E-09 7.4E-14 67.5 8.3 74 12-101 41-116 (362)
131 KOG2445|consensus 99.0 3.8E-09 8.2E-14 67.2 8.4 88 12-100 221-318 (361)
132 PF11768 DUF3312: Protein of u 99.0 4.4E-09 9.5E-14 71.5 8.9 82 10-107 255-336 (545)
133 KOG0278|consensus 99.0 2E-10 4.3E-15 71.3 2.3 84 11-107 97-180 (334)
134 KOG1063|consensus 99.0 2.4E-09 5.3E-14 73.9 7.6 83 10-102 568-650 (764)
135 KOG0290|consensus 99.0 7.1E-09 1.5E-13 65.6 9.0 96 7-102 189-320 (364)
136 KOG1274|consensus 99.0 6.1E-09 1.3E-13 73.7 9.4 82 13-108 95-176 (933)
137 KOG0649|consensus 99.0 5E-09 1.1E-13 65.0 7.9 78 16-107 116-193 (325)
138 KOG0289|consensus 99.0 1E-08 2.2E-13 67.8 9.6 83 9-105 298-382 (506)
139 KOG0641|consensus 99.0 1.6E-08 3.6E-13 62.3 9.9 90 12-101 30-120 (350)
140 KOG0641|consensus 99.0 9.9E-09 2.2E-13 63.2 8.9 73 15-101 232-304 (350)
141 KOG0308|consensus 99.0 7.6E-09 1.6E-13 71.1 9.2 77 12-102 211-287 (735)
142 KOG0639|consensus 99.0 9.4E-10 2E-14 73.9 4.8 103 8-110 545-673 (705)
143 KOG1007|consensus 99.0 3.4E-09 7.4E-14 67.0 7.0 82 9-103 209-292 (370)
144 KOG1963|consensus 99.0 5.1E-09 1.1E-13 73.5 8.4 86 7-103 198-284 (792)
145 KOG1407|consensus 99.0 1.4E-09 3.1E-14 67.7 5.0 87 9-107 15-102 (313)
146 KOG0300|consensus 99.0 4.7E-09 1E-13 67.3 7.3 82 8-103 308-389 (481)
147 KOG2445|consensus 98.9 2.2E-08 4.8E-13 63.8 10.0 83 7-99 6-90 (361)
148 KOG0642|consensus 98.9 4.1E-09 8.9E-14 71.2 6.4 84 11-100 291-374 (577)
149 KOG0301|consensus 98.9 4.6E-09 9.9E-14 72.5 6.3 80 10-108 136-215 (745)
150 KOG1538|consensus 98.9 8.3E-09 1.8E-13 71.6 7.5 70 16-100 14-83 (1081)
151 PF00400 WD40: WD domain, G-be 98.9 9.7E-09 2.1E-13 46.4 5.4 35 8-42 5-39 (39)
152 KOG1009|consensus 98.9 2.4E-08 5.3E-13 65.4 8.6 86 10-100 9-95 (434)
153 KOG0268|consensus 98.9 2.7E-09 5.8E-14 69.1 4.2 74 11-100 63-137 (433)
154 KOG1523|consensus 98.9 9.1E-09 2E-13 65.7 6.4 99 4-103 136-239 (361)
155 KOG0321|consensus 98.9 6.8E-09 1.5E-13 71.2 6.2 80 10-103 96-178 (720)
156 KOG0305|consensus 98.9 2.2E-08 4.7E-13 67.8 8.5 79 13-107 216-295 (484)
157 KOG1063|consensus 98.9 1.9E-08 4E-13 69.6 8.0 76 12-101 523-603 (764)
158 KOG4328|consensus 98.9 1.7E-08 3.7E-13 66.9 7.3 79 12-100 320-399 (498)
159 KOG2394|consensus 98.9 2E-08 4.2E-13 68.0 7.7 53 13-79 331-383 (636)
160 KOG2919|consensus 98.8 1.8E-08 3.8E-13 64.7 6.5 79 12-103 248-331 (406)
161 KOG2048|consensus 98.8 1.3E-07 2.7E-12 65.4 10.4 83 12-106 108-190 (691)
162 KOG1036|consensus 98.8 9.7E-08 2.1E-12 60.7 9.2 78 8-101 48-125 (323)
163 KOG0307|consensus 98.8 6E-09 1.3E-13 74.9 4.2 83 12-108 114-200 (1049)
164 KOG0288|consensus 98.8 4E-09 8.8E-14 69.1 2.7 81 12-106 217-297 (459)
165 KOG0290|consensus 98.8 8.8E-08 1.9E-12 60.8 8.3 81 11-102 147-229 (364)
166 KOG2106|consensus 98.8 1.8E-07 3.8E-12 63.2 10.0 79 14-104 447-525 (626)
167 KOG2048|consensus 98.8 1.7E-07 3.7E-12 64.8 10.1 81 12-107 152-240 (691)
168 KOG1408|consensus 98.8 2.8E-08 6E-13 69.5 6.3 78 12-103 76-157 (1080)
169 KOG0299|consensus 98.8 1E-07 2.2E-12 63.3 8.6 96 11-107 139-239 (479)
170 KOG0301|consensus 98.8 1.3E-07 2.8E-12 65.6 9.3 75 10-100 175-249 (745)
171 KOG1408|consensus 98.8 5.9E-08 1.3E-12 68.0 7.7 79 12-104 639-717 (1080)
172 KOG0300|consensus 98.7 3.5E-08 7.5E-13 63.4 5.8 79 6-98 140-218 (481)
173 KOG1007|consensus 98.7 4.8E-08 1E-12 62.0 6.1 78 12-104 168-249 (370)
174 COG2319 FOG: WD40 repeat [Gene 98.7 4.9E-07 1.1E-11 58.5 11.1 84 8-105 149-234 (466)
175 KOG1445|consensus 98.7 9.4E-08 2E-12 66.3 7.1 74 15-102 129-202 (1012)
176 KOG1273|consensus 98.7 3.1E-07 6.8E-12 59.0 8.9 60 9-83 60-119 (405)
177 KOG0321|consensus 98.7 9.4E-08 2E-12 65.8 6.8 97 8-104 138-252 (720)
178 TIGR03866 PQQ_ABC_repeats PQQ- 98.6 3.8E-07 8.3E-12 57.8 8.6 76 18-108 210-287 (300)
179 KOG2096|consensus 98.6 3.3E-07 7.2E-12 59.0 8.1 92 11-109 275-369 (420)
180 KOG4328|consensus 98.6 3.7E-07 8E-12 60.8 8.4 83 12-104 184-269 (498)
181 KOG0307|consensus 98.6 7.5E-08 1.6E-12 69.5 5.6 80 14-101 64-148 (1049)
182 KOG1524|consensus 98.6 9.7E-08 2.1E-12 64.9 5.7 89 12-101 102-217 (737)
183 KOG0644|consensus 98.6 4.7E-08 1E-12 69.3 3.7 85 11-109 187-271 (1113)
184 KOG1036|consensus 98.6 6.6E-07 1.4E-11 57.0 8.2 81 8-104 7-87 (323)
185 KOG1272|consensus 98.6 9.7E-08 2.1E-12 63.8 4.3 77 14-104 251-327 (545)
186 KOG2919|consensus 98.6 7.9E-07 1.7E-11 57.3 8.1 78 12-103 205-284 (406)
187 KOG4227|consensus 98.5 1.9E-07 4E-12 61.7 5.2 88 10-105 52-140 (609)
188 TIGR03866 PQQ_ABC_repeats PQQ- 98.5 1.3E-06 2.9E-11 55.3 8.9 77 15-106 31-109 (300)
189 KOG1587|consensus 98.5 3.5E-07 7.5E-12 63.3 6.3 78 11-102 395-474 (555)
190 KOG0270|consensus 98.5 1.3E-06 2.9E-11 58.0 8.2 83 12-108 284-369 (463)
191 KOG3881|consensus 98.5 1.2E-06 2.7E-11 57.4 7.7 78 14-105 247-325 (412)
192 KOG0974|consensus 98.5 1.6E-06 3.5E-11 62.4 8.9 76 10-100 171-246 (967)
193 KOG2055|consensus 98.5 2.1E-06 4.7E-11 57.4 8.9 80 13-104 212-292 (514)
194 KOG2055|consensus 98.5 3.2E-06 6.9E-11 56.6 9.6 76 13-102 343-419 (514)
195 KOG4378|consensus 98.5 1.9E-06 4.2E-11 58.4 8.4 90 2-105 106-200 (673)
196 KOG2139|consensus 98.5 2.3E-06 5E-11 55.9 8.5 73 14-100 195-268 (445)
197 KOG1310|consensus 98.4 6.3E-07 1.4E-11 61.3 5.8 89 9-101 88-179 (758)
198 KOG0644|consensus 98.4 8.2E-08 1.8E-12 68.1 1.5 71 12-100 230-300 (1113)
199 KOG1523|consensus 98.4 2.2E-06 4.7E-11 55.2 7.5 80 15-105 11-91 (361)
200 KOG1188|consensus 98.4 1.8E-06 4E-11 55.8 7.2 84 10-104 161-246 (376)
201 KOG2106|consensus 98.4 6.8E-06 1.5E-10 55.8 9.8 91 12-102 366-479 (626)
202 KOG2111|consensus 98.4 1.7E-06 3.7E-11 55.5 6.3 67 32-110 155-222 (346)
203 KOG4378|consensus 98.4 2.9E-06 6.2E-11 57.6 7.4 78 12-104 206-284 (673)
204 KOG1034|consensus 98.3 3.7E-06 8.1E-11 54.3 7.3 79 13-105 88-171 (385)
205 PRK01742 tolB translocation pr 98.3 1E-05 2.2E-10 54.8 9.6 77 12-103 201-283 (429)
206 KOG1538|consensus 98.3 7.2E-07 1.6E-11 62.4 4.0 89 10-98 49-160 (1081)
207 PRK05137 tolB translocation pr 98.3 1.6E-05 3.5E-10 53.9 10.4 77 12-103 199-281 (435)
208 COG2319 FOG: WD40 repeat [Gene 98.3 2E-05 4.4E-10 50.9 10.6 78 12-104 196-275 (466)
209 KOG1587|consensus 98.3 1.2E-05 2.7E-10 55.8 9.4 81 13-101 241-324 (555)
210 KOG1524|consensus 98.3 2.5E-06 5.4E-11 58.3 5.7 85 12-96 184-282 (737)
211 KOG1409|consensus 98.3 3.4E-06 7.4E-11 54.8 6.0 79 12-103 195-273 (404)
212 KOG0771|consensus 98.2 1E-05 2.2E-10 53.4 7.6 73 14-100 281-354 (398)
213 smart00320 WD40 WD40 repeats. 98.2 1.2E-05 2.6E-10 34.6 5.6 37 62-98 4-40 (40)
214 KOG0649|consensus 98.2 2.9E-05 6.3E-10 48.7 8.6 81 8-105 150-240 (325)
215 KOG1188|consensus 98.2 8.6E-06 1.9E-10 52.8 6.2 64 27-104 41-106 (376)
216 KOG2695|consensus 98.2 5.1E-06 1.1E-10 54.1 4.9 87 12-109 296-385 (425)
217 KOG0650|consensus 98.1 3.4E-06 7.3E-11 58.2 4.2 73 12-97 605-677 (733)
218 KOG4227|consensus 98.1 3.6E-05 7.9E-10 51.2 8.8 79 12-104 103-183 (609)
219 KOG1334|consensus 98.1 2.5E-06 5.4E-11 57.5 3.4 81 7-101 384-467 (559)
220 PRK02889 tolB translocation pr 98.1 3.6E-05 7.8E-10 52.1 9.1 76 12-102 193-274 (427)
221 KOG2315|consensus 98.1 2.5E-05 5.4E-10 53.5 8.0 74 13-102 310-392 (566)
222 PRK04922 tolB translocation pr 98.1 3.1E-05 6.7E-10 52.5 8.5 78 12-104 201-284 (433)
223 KOG1272|consensus 98.1 9.3E-06 2E-10 54.6 5.7 69 12-97 291-359 (545)
224 KOG4714|consensus 98.1 2.7E-06 5.8E-11 53.5 2.9 73 16-101 181-255 (319)
225 KOG1240|consensus 98.1 5.7E-05 1.2E-09 56.1 9.7 83 12-101 1046-1129(1431)
226 PRK03629 tolB translocation pr 98.1 8.5E-05 1.8E-09 50.4 10.2 77 13-104 197-279 (429)
227 KOG2139|consensus 98.1 6.9E-05 1.5E-09 49.3 9.2 89 14-105 140-231 (445)
228 PRK00178 tolB translocation pr 98.1 9.3E-05 2E-09 50.0 10.1 78 12-104 196-279 (430)
229 KOG1963|consensus 98.1 4E-05 8.7E-10 54.6 8.5 74 13-101 250-323 (792)
230 KOG4547|consensus 98.1 4.7E-05 1E-09 52.2 8.1 82 11-108 99-180 (541)
231 KOG2321|consensus 98.0 4.6E-05 1E-09 52.7 8.0 83 13-103 174-261 (703)
232 TIGR02800 propeller_TolB tol-p 98.0 0.00018 3.9E-09 48.3 10.0 76 13-103 188-269 (417)
233 KOG0280|consensus 98.0 8.3E-05 1.8E-09 47.7 7.8 78 11-101 162-242 (339)
234 KOG4640|consensus 98.0 8.5E-05 1.8E-09 51.8 8.1 77 16-107 22-99 (665)
235 KOG1645|consensus 98.0 4.7E-05 1E-09 50.6 6.6 77 12-103 191-269 (463)
236 PRK03629 tolB translocation pr 97.9 0.00021 4.5E-09 48.6 9.6 74 15-103 243-322 (429)
237 COG4946 Uncharacterized protei 97.9 0.00029 6.2E-09 48.1 9.8 80 12-105 399-482 (668)
238 PRK01742 tolB translocation pr 97.9 0.00015 3.2E-09 49.2 8.6 70 16-100 249-322 (429)
239 smart00320 WD40 WD40 repeats. 97.9 3.6E-05 7.9E-10 32.9 4.0 31 12-42 10-40 (40)
240 PRK04792 tolB translocation pr 97.9 0.00025 5.3E-09 48.5 9.2 75 14-103 217-297 (448)
241 PF02239 Cytochrom_D1: Cytochr 97.9 0.00027 5.9E-09 47.2 9.0 74 18-106 40-114 (369)
242 KOG4547|consensus 97.8 0.00039 8.4E-09 47.9 8.9 75 12-102 142-222 (541)
243 KOG4190|consensus 97.8 4.4E-05 9.5E-10 52.9 4.3 90 10-108 731-820 (1034)
244 KOG1517|consensus 97.8 0.00043 9.4E-09 51.2 9.2 83 9-102 1203-1289(1387)
245 KOG0974|consensus 97.7 0.00022 4.9E-09 51.9 7.7 69 23-105 142-210 (967)
246 PRK01029 tolB translocation pr 97.7 0.00058 1.3E-08 46.5 9.1 76 16-104 282-363 (428)
247 PRK05137 tolB translocation pr 97.7 0.00053 1.1E-08 46.6 9.0 76 13-103 244-325 (435)
248 PRK01029 tolB translocation pr 97.7 0.00079 1.7E-08 45.8 9.7 75 15-104 327-407 (428)
249 PRK11028 6-phosphogluconolacto 97.7 0.00069 1.5E-08 44.2 9.0 79 15-101 126-206 (330)
250 PRK04922 tolB translocation pr 97.7 0.00097 2.1E-08 45.3 9.9 75 15-104 292-372 (433)
251 KOG1064|consensus 97.7 4.6E-05 9.9E-10 58.6 3.6 71 11-105 2333-2403(2439)
252 KOG2315|consensus 97.7 0.00093 2E-08 46.1 9.3 83 8-107 264-351 (566)
253 PRK11028 6-phosphogluconolacto 97.7 0.00078 1.7E-08 44.0 8.9 72 18-100 231-304 (330)
254 PF15492 Nbas_N: Neuroblastoma 97.7 0.0023 5E-08 40.9 10.4 97 13-109 146-268 (282)
255 PRK02889 tolB translocation pr 97.7 0.001 2.3E-08 45.1 9.6 76 13-103 282-363 (427)
256 KOG4497|consensus 97.6 0.00066 1.4E-08 44.5 7.4 74 16-103 50-125 (447)
257 KOG4532|consensus 97.6 0.0018 3.8E-08 41.5 9.1 76 17-103 161-236 (344)
258 KOG4532|consensus 97.6 0.0016 3.5E-08 41.6 8.7 83 14-105 203-287 (344)
259 PF12894 Apc4_WD40: Anaphase-p 97.6 0.00054 1.2E-08 32.2 5.1 32 14-45 11-42 (47)
260 TIGR02800 propeller_TolB tol-p 97.5 0.002 4.2E-08 43.3 9.6 74 15-103 278-357 (417)
261 KOG1334|consensus 97.5 0.0004 8.7E-09 47.3 6.1 93 12-104 140-267 (559)
262 PRK00178 tolB translocation pr 97.5 0.0018 3.9E-08 43.9 9.3 74 15-103 243-322 (430)
263 PF12894 Apc4_WD40: Anaphase-p 97.4 0.00082 1.8E-08 31.6 5.0 34 70-104 11-44 (47)
264 KOG3881|consensus 97.4 0.0014 3E-08 43.5 7.4 77 17-106 205-283 (412)
265 KOG0882|consensus 97.4 0.0014 3E-08 44.5 7.4 98 12-109 142-240 (558)
266 KOG2314|consensus 97.4 0.00073 1.6E-08 46.9 5.7 74 18-108 214-298 (698)
267 KOG1240|consensus 97.3 0.0037 8.1E-08 47.1 9.5 93 13-105 1097-1230(1431)
268 PRK04792 tolB translocation pr 97.3 0.0037 8E-08 42.9 9.1 73 16-103 263-341 (448)
269 KOG1064|consensus 97.3 0.00066 1.4E-08 52.8 5.8 95 15-109 2252-2375(2439)
270 KOG2321|consensus 97.3 0.00091 2E-08 46.6 5.9 64 29-106 148-211 (703)
271 COG4946 Uncharacterized protei 97.3 0.01 2.3E-07 40.9 10.5 81 9-104 354-435 (668)
272 KOG0322|consensus 97.3 0.0016 3.4E-08 41.5 6.1 87 12-108 203-289 (323)
273 KOG4497|consensus 97.2 0.0019 4.2E-08 42.4 6.5 74 15-103 319-394 (447)
274 KOG0309|consensus 97.2 0.0015 3.3E-08 47.0 5.8 80 12-104 112-192 (1081)
275 KOG2079|consensus 97.1 0.0044 9.6E-08 46.1 8.1 67 14-94 130-199 (1206)
276 PF02239 Cytochrom_D1: Cytochr 97.1 0.0039 8.5E-08 41.8 7.5 66 30-109 10-75 (369)
277 KOG2041|consensus 97.1 0.0018 4E-08 46.5 6.0 80 10-102 67-147 (1189)
278 KOG3617|consensus 97.1 0.00053 1.2E-08 49.9 3.4 70 17-100 62-131 (1416)
279 TIGR02658 TTQ_MADH_Hv methylam 97.1 0.02 4.4E-07 38.2 10.5 78 16-108 249-338 (352)
280 PLN02919 haloacid dehalogenase 97.1 0.011 2.4E-07 44.7 10.2 87 17-104 806-892 (1057)
281 KOG1517|consensus 97.1 0.0071 1.5E-07 45.3 8.8 79 12-103 1252-1336(1387)
282 PF15492 Nbas_N: Neuroblastoma 97.1 0.011 2.4E-07 38.0 8.6 72 20-101 3-74 (282)
283 KOG1354|consensus 97.1 0.0041 8.8E-08 41.1 6.6 77 13-103 271-362 (433)
284 PF10282 Lactonase: Lactonase, 97.0 0.042 9.2E-07 36.4 11.6 78 16-103 246-327 (345)
285 KOG1275|consensus 97.0 0.0029 6.3E-08 46.4 6.3 68 23-106 184-260 (1118)
286 KOG4714|consensus 97.0 0.0024 5.2E-08 40.6 5.0 88 9-98 218-316 (319)
287 KOG3621|consensus 96.9 0.0039 8.4E-08 44.4 6.1 79 15-101 77-155 (726)
288 KOG2695|consensus 96.9 0.0013 2.8E-08 43.3 3.4 81 14-104 252-333 (425)
289 PRK04043 tolB translocation pr 96.9 0.069 1.5E-06 36.5 11.5 73 16-103 189-268 (419)
290 KOG0280|consensus 96.8 0.012 2.5E-07 38.2 7.2 72 17-100 124-196 (339)
291 PF04762 IKI3: IKI3 family; I 96.8 0.021 4.4E-07 42.8 9.5 71 13-98 74-148 (928)
292 TIGR02658 TTQ_MADH_Hv methylam 96.8 0.021 4.5E-07 38.2 8.4 73 22-108 53-144 (352)
293 KOG1832|consensus 96.7 0.0035 7.5E-08 46.2 4.5 75 12-100 1099-1175(1516)
294 KOG1409|consensus 96.7 0.057 1.2E-06 35.9 9.6 94 9-102 109-229 (404)
295 KOG4640|consensus 96.7 0.0084 1.8E-07 42.3 6.0 35 13-47 60-95 (665)
296 KOG1354|consensus 96.6 0.02 4.3E-07 38.0 7.2 79 14-101 25-117 (433)
297 KOG3914|consensus 96.6 0.018 3.8E-07 38.5 7.0 41 65-105 146-186 (390)
298 PRK04043 tolB translocation pr 96.6 0.067 1.4E-06 36.6 10.0 76 14-104 232-313 (419)
299 KOG1912|consensus 96.5 0.013 2.9E-07 42.6 6.5 81 13-109 14-106 (1062)
300 KOG0309|consensus 96.4 0.0026 5.7E-08 45.8 2.6 75 15-102 159-234 (1081)
301 KOG2066|consensus 96.4 0.035 7.7E-07 40.4 7.8 70 12-97 56-143 (846)
302 PF08553 VID27: VID27 cytoplas 96.3 0.03 6.6E-07 41.1 7.2 69 15-99 578-646 (794)
303 PF10313 DUF2415: Uncharacteri 96.1 0.041 8.9E-07 25.3 4.9 32 71-102 1-35 (43)
304 PF14655 RAB3GAP2_N: Rab3 GTPa 96.1 0.11 2.4E-06 35.6 8.9 78 15-106 308-404 (415)
305 PF14783 BBS2_Mid: Ciliary BBS 96.0 0.12 2.5E-06 28.9 8.9 64 17-98 2-69 (111)
306 COG2706 3-carboxymuconate cycl 96.0 0.12 2.6E-06 34.3 8.2 75 17-102 147-223 (346)
307 PLN02919 haloacid dehalogenase 95.9 0.19 4E-06 38.5 9.9 87 17-104 742-837 (1057)
308 KOG2079|consensus 95.6 0.022 4.9E-07 42.7 4.1 69 26-107 99-167 (1206)
309 KOG1920|consensus 95.5 0.43 9.3E-06 36.7 10.3 71 14-99 68-138 (1265)
310 COG5354 Uncharacterized protei 95.4 0.03 6.6E-07 38.8 4.1 77 15-108 33-124 (561)
311 PF04762 IKI3: IKI3 family; I 95.4 0.11 2.4E-06 39.1 7.3 74 17-104 259-337 (928)
312 KOG2314|consensus 95.4 0.11 2.4E-06 36.7 6.6 74 16-103 494-576 (698)
313 KOG1912|consensus 95.2 0.13 2.8E-06 37.9 6.6 81 12-106 53-149 (1062)
314 PF08450 SGL: SMP-30/Gluconola 95.1 0.45 9.8E-06 29.8 9.9 85 15-107 134-219 (246)
315 PF10313 DUF2415: Uncharacteri 95.1 0.13 2.9E-06 23.6 4.7 32 15-46 1-35 (43)
316 PF07569 Hira: TUP1-like enhan 94.9 0.52 1.1E-05 29.5 9.0 80 22-104 18-99 (219)
317 COG5170 CDC55 Serine/threonine 94.8 0.15 3.3E-06 33.7 5.8 81 13-102 25-119 (460)
318 KOG4190|consensus 94.6 0.11 2.5E-06 36.8 5.1 98 10-109 780-915 (1034)
319 PF02897 Peptidase_S9_N: Proly 94.4 0.86 1.9E-05 30.9 9.0 73 16-104 125-214 (414)
320 PF10168 Nup88: Nuclear pore c 94.4 1.5 3.3E-05 32.4 11.3 88 15-103 85-182 (717)
321 COG5170 CDC55 Serine/threonine 94.3 0.072 1.6E-06 35.1 3.4 85 16-102 223-311 (460)
322 PF00930 DPPIV_N: Dipeptidyl p 94.2 0.26 5.7E-06 32.8 6.1 64 23-102 1-73 (353)
323 KOG0882|consensus 94.2 0.032 6.8E-07 38.3 1.7 79 13-103 8-87 (558)
324 PF11768 DUF3312: Protein of u 94.0 0.12 2.5E-06 36.5 4.2 34 69-102 258-291 (545)
325 KOG4649|consensus 93.5 0.64 1.4E-05 30.2 6.5 65 26-104 63-127 (354)
326 PF10282 Lactonase: Lactonase, 93.4 1.5 3.3E-05 29.1 11.3 77 17-103 89-177 (345)
327 PRK02888 nitrous-oxide reducta 93.3 1.4 3.1E-05 31.9 8.6 33 71-103 321-354 (635)
328 KOG1916|consensus 93.3 0.07 1.5E-06 39.8 2.3 74 12-100 178-265 (1283)
329 PF06433 Me-amine-dh_H: Methyl 93.2 0.86 1.9E-05 30.5 6.9 39 72-110 290-330 (342)
330 PF14655 RAB3GAP2_N: Rab3 GTPa 93.1 0.65 1.4E-05 31.9 6.5 51 59-109 296-346 (415)
331 KOG2444|consensus 92.9 0.42 9.2E-06 30.1 5.0 63 25-101 113-178 (238)
332 PF12657 TFIIIC_delta: Transcr 92.9 1.2 2.7E-05 26.6 8.9 31 72-102 87-123 (173)
333 PF11715 Nup160: Nucleoporin N 92.5 2.3 4.9E-05 30.2 8.8 35 71-105 215-253 (547)
334 COG0823 TolB Periplasmic compo 92.5 0.61 1.3E-05 32.2 5.8 73 16-103 239-317 (425)
335 PF08450 SGL: SMP-30/Gluconola 92.3 1.8 4E-05 27.1 9.5 72 14-101 85-165 (246)
336 PF04053 Coatomer_WDAD: Coatom 92.2 1.1 2.3E-05 31.2 6.7 56 26-99 117-172 (443)
337 COG0823 TolB Periplasmic compo 91.8 1.1 2.4E-05 30.9 6.5 70 19-103 286-361 (425)
338 KOG2377|consensus 91.8 1.7 3.6E-05 30.6 7.1 62 12-83 64-125 (657)
339 PRK02888 nitrous-oxide reducta 91.7 1.8 3.8E-05 31.5 7.4 81 17-101 323-405 (635)
340 COG5354 Uncharacterized protei 91.6 1.7 3.8E-05 30.6 7.1 34 13-46 273-308 (561)
341 PRK13616 lipoprotein LpqB; Pro 91.6 1.3 2.8E-05 32.0 6.7 71 17-96 399-472 (591)
342 PF08596 Lgl_C: Lethal giant l 91.4 3.3 7.3E-05 28.4 9.7 88 16-104 3-119 (395)
343 KOG2395|consensus 91.4 0.7 1.5E-05 32.8 5.1 66 17-98 433-498 (644)
344 PF14870 PSII_BNR: Photosynthe 91.4 2.9 6.3E-05 27.6 9.9 70 14-98 144-213 (302)
345 TIGR03300 assembly_YfgL outer 91.1 1.4 3.1E-05 29.4 6.4 27 81-107 319-345 (377)
346 COG2706 3-carboxymuconate cycl 91.1 3.3 7.2E-05 27.8 10.5 76 14-99 243-320 (346)
347 PF00930 DPPIV_N: Dipeptidyl p 91.1 0.72 1.6E-05 30.8 4.9 32 14-46 42-73 (353)
348 TIGR03300 assembly_YfgL outer 90.5 2.7 5.8E-05 28.1 7.2 26 82-107 145-170 (377)
349 KOG4460|consensus 90.2 4.7 0.0001 29.0 8.1 88 16-103 105-201 (741)
350 PF15390 DUF4613: Domain of un 90.0 3.4 7.5E-05 29.9 7.4 31 70-100 155-186 (671)
351 KOG3621|consensus 89.8 1.6 3.5E-05 31.9 5.8 76 13-101 32-107 (726)
352 PF12234 Rav1p_C: RAVE protein 89.8 6.3 0.00014 28.9 10.2 69 17-98 32-102 (631)
353 KOG1275|consensus 89.6 3.3 7.2E-05 31.5 7.3 75 18-102 269-344 (1118)
354 PF07569 Hira: TUP1-like enhan 89.3 0.76 1.6E-05 28.8 3.7 29 78-106 18-46 (219)
355 PF07433 DUF1513: Protein of u 89.1 4.9 0.00011 26.7 9.1 34 14-47 216-250 (305)
356 KOG3617|consensus 89.0 0.93 2E-05 34.2 4.3 36 9-44 96-131 (1416)
357 PF07676 PD40: WD40-like Beta 88.7 1.2 2.7E-05 19.3 5.4 28 70-97 8-38 (39)
358 PF07433 DUF1513: Protein of u 88.5 5.5 0.00012 26.4 8.7 38 70-107 216-254 (305)
359 COG3490 Uncharacterized protei 87.2 4.5 9.7E-05 26.8 6.1 56 21-89 120-180 (366)
360 PF14783 BBS2_Mid: Ciliary BBS 86.7 3.9 8.5E-05 22.9 7.7 66 12-95 40-109 (111)
361 KOG2066|consensus 86.5 3.3 7.2E-05 30.9 5.8 66 17-106 42-107 (846)
362 PF04841 Vps16_N: Vps16, N-ter 86.1 9 0.00019 26.4 8.9 36 64-100 74-109 (410)
363 PF08596 Lgl_C: Lethal giant l 85.9 9.2 0.0002 26.3 9.8 73 13-100 85-173 (395)
364 KOG1920|consensus 85.9 5.3 0.00012 31.3 6.7 79 14-105 241-327 (1265)
365 COG3386 Gluconolactonase [Carb 85.5 8.5 0.00018 25.5 8.0 33 12-44 160-193 (307)
366 PF12768 Rax2: Cortical protei 85.1 3.2 7E-05 27.1 4.9 56 35-104 15-76 (281)
367 PF13360 PQQ_2: PQQ-like domai 84.8 4.3 9.3E-05 25.0 5.3 67 25-107 35-101 (238)
368 PF14583 Pectate_lyase22: Olig 84.7 4.5 9.8E-05 27.7 5.5 70 19-103 40-113 (386)
369 PRK10115 protease 2; Provision 84.6 14 0.0003 27.4 8.9 72 16-103 128-210 (686)
370 PF11715 Nup160: Nucleoporin N 84.6 5.4 0.00012 28.3 6.2 33 15-47 215-251 (547)
371 COG5167 VID27 Protein involved 84.5 5.2 0.00011 28.8 5.8 60 26-100 573-632 (776)
372 KOG1832|consensus 84.1 2.3 5.1E-05 32.4 4.2 41 64-104 1095-1135(1516)
373 PF13360 PQQ_2: PQQ-like domai 83.9 7.8 0.00017 23.8 6.2 68 26-107 76-147 (238)
374 PF04841 Vps16_N: Vps16, N-ter 83.0 13 0.00028 25.7 10.4 31 14-44 216-246 (410)
375 KOG1645|consensus 83.0 1.3 2.7E-05 30.4 2.4 44 62-105 185-229 (463)
376 TIGR02276 beta_rpt_yvtn 40-res 82.2 2.1 4.5E-05 18.7 2.4 26 80-105 1-27 (42)
377 PRK13616 lipoprotein LpqB; Pro 81.2 18 0.00039 26.4 7.6 76 14-98 447-523 (591)
378 KOG4499|consensus 81.1 8.6 0.00019 24.9 5.4 34 76-109 217-250 (310)
379 smart00564 PQQ beta-propeller 80.7 3 6.4E-05 17.1 2.5 24 84-107 8-31 (33)
380 COG3386 Gluconolactonase [Carb 80.2 15 0.00032 24.5 7.3 35 66-100 158-193 (307)
381 TIGR02171 Fb_sc_TIGR02171 Fibr 78.3 18 0.00039 27.8 7.0 39 9-47 344-388 (912)
382 KOG2114|consensus 77.7 29 0.00064 26.6 10.1 78 13-100 124-201 (933)
383 KOG2114|consensus 76.8 32 0.00068 26.4 8.7 74 13-100 170-243 (933)
384 PF12234 Rav1p_C: RAVE protein 76.5 28 0.00061 25.7 9.3 80 12-98 70-154 (631)
385 COG3204 Uncharacterized protei 75.7 21 0.00045 23.8 7.7 35 12-46 83-117 (316)
386 PF10008 DUF2251: Uncharacteri 73.4 13 0.00028 20.3 5.5 45 2-46 42-86 (97)
387 PF00780 CNH: CNH domain; Int 71.7 23 0.0005 22.5 7.4 60 25-101 6-65 (275)
388 PRK11138 outer membrane biogen 71.4 26 0.00056 23.8 6.2 22 26-47 120-141 (394)
389 PF01011 PQQ: PQQ enzyme repea 70.7 5.6 0.00012 17.2 2.0 21 87-107 5-25 (38)
390 KOG4649|consensus 69.7 29 0.00064 22.9 7.7 26 22-47 101-126 (354)
391 PF10168 Nup88: Nuclear pore c 69.6 18 0.0004 27.1 5.4 35 13-47 145-182 (717)
392 TIGR02171 Fb_sc_TIGR02171 Fibr 68.6 36 0.00078 26.3 6.6 35 67-101 346-386 (912)
393 PF04053 Coatomer_WDAD: Coatom 68.4 31 0.00066 24.3 6.0 29 15-44 33-61 (443)
394 KOG3630|consensus 67.9 8.2 0.00018 30.4 3.4 72 15-100 156-228 (1405)
395 KOG1008|consensus 66.6 5.5 0.00012 29.2 2.2 71 16-100 197-275 (783)
396 PF01436 NHL: NHL repeat; Int 66.5 8.5 0.00018 15.5 4.1 23 74-96 5-27 (28)
397 PF10647 Gmad1: Lipoprotein Lp 65.1 34 0.00073 21.9 8.3 75 16-95 113-191 (253)
398 PF06977 SdiA-regulated: SdiA- 63.5 37 0.00081 21.9 9.7 72 14-100 21-94 (248)
399 PF03178 CPSF_A: CPSF A subuni 63.3 40 0.00087 22.2 7.3 69 13-100 87-157 (321)
400 KOG2444|consensus 60.9 33 0.00071 22.0 4.6 27 81-107 147-173 (238)
401 KOG2247|consensus 60.6 0.84 1.8E-05 32.2 -2.4 78 9-102 29-107 (615)
402 COG3391 Uncharacterized conser 60.4 52 0.0011 22.5 9.6 74 16-104 117-194 (381)
403 PF10214 Rrn6: RNA polymerase 60.4 73 0.0016 24.2 9.4 86 15-104 146-236 (765)
404 KOG1916|consensus 60.3 21 0.00045 27.8 4.2 24 22-45 243-266 (1283)
405 PF01731 Arylesterase: Arylest 58.6 27 0.00058 18.6 4.0 31 71-101 54-85 (86)
406 PF06977 SdiA-regulated: SdiA- 57.6 49 0.0011 21.3 9.0 90 7-100 57-147 (248)
407 PF03178 CPSF_A: CPSF A subuni 56.6 54 0.0012 21.5 8.4 70 16-100 131-202 (321)
408 KOG1008|consensus 56.4 3.3 7.1E-05 30.3 -0.2 69 17-101 157-227 (783)
409 PF14269 Arylsulfotran_2: Aryl 56.0 21 0.00046 23.5 3.5 37 72-108 145-181 (299)
410 TIGR02608 delta_60_rpt delta-6 51.2 29 0.00063 16.8 4.5 19 16-34 2-20 (55)
411 PHA02713 hypothetical protein; 50.5 64 0.0014 23.4 5.3 26 81-106 512-539 (557)
412 KOG3630|consensus 50.2 98 0.0021 25.1 6.3 32 13-44 197-228 (1405)
413 PF13570 PQQ_3: PQQ-like domai 49.9 23 0.0005 15.3 3.1 21 81-101 20-40 (40)
414 PF07995 GSDH: Glucose / Sorbo 48.1 82 0.0018 21.1 7.6 72 13-95 251-330 (331)
415 PF10214 Rrn6: RNA polymerase 48.1 1.2E+02 0.0026 23.0 9.9 86 12-99 77-175 (765)
416 KOG4499|consensus 47.7 78 0.0017 20.7 7.6 43 23-79 220-262 (310)
417 KOG2727|consensus 45.9 20 0.00042 27.9 2.2 30 18-47 325-354 (1244)
418 PF14761 HPS3_N: Hermansky-Pud 45.8 77 0.0017 20.1 6.8 50 27-89 29-78 (215)
419 PF10584 Proteasome_A_N: Prote 45.8 8.9 0.00019 15.0 0.3 8 77-84 7-14 (23)
420 PF07250 Glyoxal_oxid_N: Glyox 45.1 83 0.0018 20.3 5.5 33 74-108 173-205 (243)
421 PF08728 CRT10: CRT10; InterP 44.9 1.3E+02 0.0028 22.9 6.1 75 25-100 113-195 (717)
422 KOG2377|consensus 43.3 1.3E+02 0.0027 21.9 8.7 35 68-102 64-98 (657)
423 PRK11138 outer membrane biogen 43.1 1E+02 0.0023 20.9 8.0 18 82-99 376-393 (394)
424 PF14781 BBS2_N: Ciliary BBSom 43.1 69 0.0015 18.8 8.9 78 20-104 4-85 (136)
425 PF14870 PSII_BNR: Photosynthe 42.0 1E+02 0.0023 20.6 8.7 71 14-96 186-257 (302)
426 KOG2280|consensus 40.8 1.4E+02 0.003 23.0 5.7 30 70-100 83-112 (829)
427 KOG3616|consensus 39.5 1.3E+02 0.0027 23.6 5.4 33 15-47 15-47 (1636)
428 PF13121 DUF3976: Domain of un 39.5 27 0.00059 15.3 1.4 13 1-13 1-13 (41)
429 PF13964 Kelch_6: Kelch motif 39.1 42 0.00091 15.1 2.6 24 81-104 11-40 (50)
430 KOG3616|consensus 38.8 72 0.0016 24.7 4.1 33 71-103 15-47 (1636)
431 PF08728 CRT10: CRT10; InterP 38.6 1.8E+02 0.0039 22.2 7.6 74 15-99 164-245 (717)
432 PF14269 Arylsulfotran_2: Aryl 38.5 1.2E+02 0.0026 20.2 7.8 32 16-47 145-176 (299)
433 TIGR02604 Piru_Ver_Nterm putat 38.0 1.3E+02 0.0028 20.4 7.6 19 73-91 186-204 (367)
434 PRK13684 Ycf48-like protein; P 37.2 1.3E+02 0.0028 20.2 8.9 21 14-34 172-192 (334)
435 PRK14751 tetracycline resistan 37.1 27 0.00058 14.0 1.1 10 90-99 13-22 (28)
436 COG3204 Uncharacterized protei 36.6 1.3E+02 0.0029 20.2 8.4 89 8-100 122-210 (316)
437 PF11635 Med16: Mediator compl 36.4 1.9E+02 0.0042 22.0 8.8 82 13-95 258-345 (753)
438 PF05096 Glu_cyclase_2: Glutam 36.2 1.3E+02 0.0027 19.8 6.7 41 62-105 122-162 (264)
439 PF05907 DUF866: Eukaryotic pr 35.3 63 0.0014 19.4 2.9 41 62-104 96-137 (161)
440 PF12341 DUF3639: Protein of u 35.3 39 0.00086 13.7 3.6 24 16-41 3-26 (27)
441 PF03088 Str_synth: Strictosid 35.2 76 0.0016 17.0 4.9 22 71-92 57-79 (89)
442 PRK10526 acyl-CoA thioesterase 35.0 1.2E+02 0.0026 19.9 4.4 26 15-40 259-284 (286)
443 PF15390 DUF4613: Domain of un 34.9 91 0.002 23.2 4.0 33 12-44 153-186 (671)
444 TIGR03606 non_repeat_PQQ dehyd 34.2 1.7E+02 0.0038 20.9 7.3 60 26-94 369-429 (454)
445 PF12566 DUF3748: Protein of u 33.0 41 0.00088 19.1 1.7 22 18-39 71-92 (122)
446 TIGR03075 PQQ_enz_alc_DH PQQ-d 32.3 1.8E+02 0.0038 21.1 5.2 28 81-108 471-498 (527)
447 COG1770 PtrB Protease II [Amin 32.3 2.2E+02 0.0049 21.5 6.2 32 16-47 130-166 (682)
448 KOG1983|consensus 31.8 1.7E+02 0.0036 23.3 5.2 26 79-104 243-268 (993)
449 PF08149 BING4CT: BING4CT (NUC 30.9 74 0.0016 16.8 2.4 27 14-40 9-35 (80)
450 PF08801 Nucleoporin_N: Nup133 30.8 1.3E+02 0.0027 20.8 4.2 31 15-45 190-220 (422)
451 KOG2109|consensus 28.8 71 0.0015 24.0 2.8 34 12-45 313-347 (788)
452 cd03444 Thioesterase_II_repeat 28.7 1.1E+02 0.0023 16.6 3.0 13 21-33 87-99 (104)
453 TIGR03606 non_repeat_PQQ dehyd 28.7 1.5E+02 0.0032 21.2 4.2 32 71-102 30-61 (454)
454 PF13418 Kelch_4: Galactose ox 28.6 63 0.0014 14.4 1.8 25 80-104 11-41 (49)
455 PF01344 Kelch_1: Kelch motif; 28.5 55 0.0012 14.3 1.6 25 81-105 11-41 (47)
456 PF08553 VID27: VID27 cytoplas 27.9 2.9E+02 0.0064 21.5 6.8 58 30-99 546-605 (794)
457 PF05694 SBP56: 56kDa selenium 27.7 1.7E+02 0.0037 21.0 4.3 32 71-102 312-344 (461)
458 cd00216 PQQ_DH Dehydrogenases 26.4 2.4E+02 0.0053 20.0 5.8 24 83-106 111-134 (488)
459 PHA03092 semaphorin-like prote 25.0 1.4E+02 0.0031 16.9 4.1 35 13-47 59-93 (134)
460 TIGR00189 tesB acyl-CoA thioes 24.9 1.9E+02 0.004 18.6 4.0 12 22-33 254-265 (271)
461 PF14779 BBS1: Ciliary BBSome 24.5 2.1E+02 0.0046 18.8 7.8 41 7-47 169-216 (257)
462 PF08954 DUF1900: Domain of un 23.6 1.6E+02 0.0036 17.1 4.5 31 72-102 12-43 (136)
463 PLN00033 photosystem II stabil 23.4 2.7E+02 0.0058 19.5 8.1 19 70-88 280-298 (398)
464 PF13983 YsaB: YsaB-like lipop 22.9 73 0.0016 16.3 1.5 14 17-30 60-73 (77)
465 PF10636 hemP: Hemin uptake pr 22.9 91 0.002 13.9 2.0 23 8-30 14-36 (38)
466 KOG2467|consensus 22.6 97 0.0021 21.7 2.4 22 80-101 339-360 (477)
467 KOG2247|consensus 22.5 86 0.0019 22.8 2.2 55 20-88 123-177 (615)
468 KOG2006|consensus 22.4 2.1E+02 0.0046 22.8 4.2 78 17-103 151-228 (1023)
469 TIGR03118 PEPCTERM_chp_1 conse 22.2 2.7E+02 0.0058 19.1 6.5 37 73-109 246-288 (336)
470 PF14157 YmzC: YmzC-like prote 21.7 63 0.0014 16.2 1.1 22 82-103 29-50 (63)
471 PF12404 DUF3663: Peptidase ; 21.5 1E+02 0.0023 16.1 1.9 26 1-26 1-26 (77)
472 PF14727 PHTB1_N: PTHB1 N-term 21.4 3.1E+02 0.0067 19.4 6.6 58 27-99 146-203 (418)
473 PF02870 Methyltransf_1N: 6-O- 21.1 97 0.0021 15.5 1.8 20 79-98 9-28 (77)
474 PF13449 Phytase-like: Esteras 20.7 2.7E+02 0.0059 18.6 9.1 32 75-107 89-126 (326)
475 PF09631 Sen15: Sen15 protein; 20.5 1.2E+02 0.0027 16.4 2.2 19 85-103 77-95 (101)
No 1
>KOG0271|consensus
Probab=99.81 E-value=1.9e-19 Score=115.61 Aligned_cols=80 Identities=19% Similarity=0.307 Sum_probs=76.2
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 91 (110)
+|.++|.|++|+|+|..|++|+.|.++++||..... +.++.++|.+.|.+++|+|||..+++++.|
T Consensus 113 GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeT--------------p~~t~KgH~~WVlcvawsPDgk~iASG~~d 178 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTET--------------PLFTCKGHKNWVLCVAWSPDGKKIASGSKD 178 (480)
T ss_pred CCCCcEEEEEecCCCceEEecCCCceEEeeccCCCC--------------cceeecCCccEEEEEEECCCcchhhccccC
Confidence 799999999999999999999999999999999887 789999999999999999999999999999
Q ss_pred CcEEEEeCCCCCCh
Q psy11100 92 GLIIVWMLYKCNDD 105 (110)
Q Consensus 92 ~~i~~w~~~~~~~~ 105 (110)
|+|++||+.+|..+
T Consensus 179 g~I~lwdpktg~~~ 192 (480)
T KOG0271|consen 179 GSIRLWDPKTGQQI 192 (480)
T ss_pred CeEEEecCCCCCcc
Confidence 99999999987654
No 2
>KOG0263|consensus
Probab=99.77 E-value=3e-18 Score=117.02 Aligned_cols=89 Identities=28% Similarity=0.505 Sum_probs=84.0
Q ss_pred eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100 8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS 87 (110)
Q Consensus 8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 87 (110)
++..+|.+.|.|+.|+|+..++++|+.|.+|++||+.++. ..+.+.+|.+.|.+++|||+|..+++
T Consensus 529 RifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~--------------~VRiF~GH~~~V~al~~Sp~Gr~LaS 594 (707)
T KOG0263|consen 529 RIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN--------------SVRIFTGHKGPVTALAFSPCGRYLAS 594 (707)
T ss_pred hhhcccccccceEEECCcccccccCCCCceEEEEEcCCCc--------------EEEEecCCCCceEEEEEcCCCceEee
Confidence 5677999999999999999999999999999999999987 67889999999999999999999999
Q ss_pred ecCCCcEEEEeCCCCCChhhhhC
Q psy11100 88 SDETGLIIVWMLYKCNDDDEWKR 110 (110)
Q Consensus 88 ~~~~~~i~~w~~~~~~~~~~~~~ 110 (110)
++.|+.|.+||+.+++.+.+++.
T Consensus 595 g~ed~~I~iWDl~~~~~v~~l~~ 617 (707)
T KOG0263|consen 595 GDEDGLIKIWDLANGSLVKQLKG 617 (707)
T ss_pred cccCCcEEEEEcCCCcchhhhhc
Confidence 99999999999999999888763
No 3
>KOG0272|consensus
Probab=99.76 E-value=2.3e-18 Score=111.43 Aligned_cols=83 Identities=22% Similarity=0.278 Sum_probs=77.9
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 91 (110)
||...|.+++|+|||.++++|+.|..-+|||+.+++ .+..+.+|..+|.+++|+|+|..+++|+.|
T Consensus 301 GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr--------------~im~L~gH~k~I~~V~fsPNGy~lATgs~D 366 (459)
T KOG0272|consen 301 GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR--------------CIMFLAGHIKEILSVAFSPNGYHLATGSSD 366 (459)
T ss_pred ccccccceeEecCCCceeeccCccchhheeecccCc--------------EEEEecccccceeeEeECCCceEEeecCCC
Confidence 899999999999999999999999999999999998 788899999999999999999999999999
Q ss_pred CcEEEEeCCCCCChhhh
Q psy11100 92 GLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 92 ~~i~~w~~~~~~~~~~~ 108 (110)
++++|||++..+.+-.|
T Consensus 367 nt~kVWDLR~r~~ly~i 383 (459)
T KOG0272|consen 367 NTCKVWDLRMRSELYTI 383 (459)
T ss_pred CcEEEeeecccccceec
Confidence 99999999987765443
No 4
>KOG0263|consensus
Probab=99.72 E-value=4.6e-17 Score=111.37 Aligned_cols=83 Identities=27% Similarity=0.497 Sum_probs=77.3
Q ss_pred eeeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeE
Q psy11100 6 SKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKL 85 (110)
Q Consensus 6 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 85 (110)
+.++..||+++|.+++|+|+|++|++|+.|+.|.+||+..+. ...++.+|++.|.++.||.+|..|
T Consensus 569 ~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~--------------~v~~l~~Ht~ti~SlsFS~dg~vL 634 (707)
T KOG0263|consen 569 SVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS--------------LVKQLKGHTGTIYSLSFSRDGNVL 634 (707)
T ss_pred EEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc--------------chhhhhcccCceeEEEEecCCCEE
Confidence 457778999999999999999999999999999999999987 678889999999999999999999
Q ss_pred EEecCCCcEEEEeCCCC
Q psy11100 86 TSSDETGLIIVWMLYKC 102 (110)
Q Consensus 86 ~s~~~~~~i~~w~~~~~ 102 (110)
++++.|.+|++||+.+-
T Consensus 635 asgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 635 ASGGADNSVRLWDLTKV 651 (707)
T ss_pred EecCCCCeEEEEEchhh
Confidence 99999999999998753
No 5
>KOG0266|consensus
Probab=99.67 E-value=1.2e-15 Score=102.76 Aligned_cols=82 Identities=24% Similarity=0.417 Sum_probs=77.0
Q ss_pred ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100 9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS 88 (110)
Q Consensus 9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 88 (110)
...+|...|++++|+|+|+.+++|+.|+++++||+..+. +...+..|.+.|.+++|++++..++++
T Consensus 241 ~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~--------------~~~~l~~hs~~is~~~f~~d~~~l~s~ 306 (456)
T KOG0266|consen 241 TLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE--------------CVRKLKGHSDGISGLAFSPDGNLLVSA 306 (456)
T ss_pred EecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe--------------EEEeeeccCCceEEEEECCCCCEEEEc
Confidence 344999999999999999999999999999999999976 788999999999999999999999999
Q ss_pred cCCCcEEEEeCCCCCC
Q psy11100 89 DETGLIIVWMLYKCND 104 (110)
Q Consensus 89 ~~~~~i~~w~~~~~~~ 104 (110)
+.|+.|++||+.++..
T Consensus 307 s~d~~i~vwd~~~~~~ 322 (456)
T KOG0266|consen 307 SYDGTIRVWDLETGSK 322 (456)
T ss_pred CCCccEEEEECCCCce
Confidence 9999999999999983
No 6
>KOG0266|consensus
Probab=99.67 E-value=7.9e-16 Score=103.69 Aligned_cols=84 Identities=19% Similarity=0.347 Sum_probs=76.5
Q ss_pred CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCC-CCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100 11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTG-KESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 89 (110)
.+|...|.+++|+|+++++++++.|+.+++||+... . .+.++.+|...|++++|+|+++.+++++
T Consensus 200 ~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~--------------~~~~l~gH~~~v~~~~f~p~g~~i~Sgs 265 (456)
T KOG0266|consen 200 SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR--------------NLKTLKGHSTYVTSVAFSPDGNLLVSGS 265 (456)
T ss_pred cccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe--------------EEEEecCCCCceEEEEecCCCCEEEEec
Confidence 579999999999999999999999999999999443 4 6788999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCChhhh
Q psy11100 90 ETGLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 90 ~~~~i~~w~~~~~~~~~~~ 108 (110)
.|++|++||++++..+..+
T Consensus 266 ~D~tvriWd~~~~~~~~~l 284 (456)
T KOG0266|consen 266 DDGTVRIWDVRTGECVRKL 284 (456)
T ss_pred CCCcEEEEeccCCeEEEee
Confidence 9999999999997766554
No 7
>KOG0271|consensus
Probab=99.66 E-value=3.4e-16 Score=100.83 Aligned_cols=83 Identities=22% Similarity=0.342 Sum_probs=78.3
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 91 (110)
+|+.-|..+.|+||++++++++.|.+|++|+-.++. .+..+.+|-+.|+.++|+.|.++++|++.|
T Consensus 365 gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk--------------~lasfRGHv~~VYqvawsaDsRLlVS~SkD 430 (480)
T KOG0271|consen 365 GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGK--------------FLASFRGHVAAVYQVAWSADSRLLVSGSKD 430 (480)
T ss_pred chhhheeeEEECCCccEEEEeecccceeeeeCCCcc--------------hhhhhhhccceeEEEEeccCccEEEEcCCC
Confidence 899999999999999999999999999999999987 678899999999999999999999999999
Q ss_pred CcEEEEeCCCCCChhhh
Q psy11100 92 GLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 92 ~~i~~w~~~~~~~~~~~ 108 (110)
.+|++|++++.+....|
T Consensus 431 sTLKvw~V~tkKl~~DL 447 (480)
T KOG0271|consen 431 STLKVWDVRTKKLKQDL 447 (480)
T ss_pred ceEEEEEeeeeeecccC
Confidence 99999999998876655
No 8
>KOG0291|consensus
Probab=99.65 E-value=1.5e-15 Score=104.37 Aligned_cols=83 Identities=23% Similarity=0.378 Sum_probs=78.6
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 91 (110)
+|...+.+++++|||+++++|+.||.|++||...+. +..++..|++.|..+.|+..|+.+.+++.|
T Consensus 348 gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf--------------C~vTFteHts~Vt~v~f~~~g~~llssSLD 413 (893)
T KOG0291|consen 348 GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF--------------CFVTFTEHTSGVTAVQFTARGNVLLSSSLD 413 (893)
T ss_pred ccccceeeEEECCCCcEEEeccCCCcEEEEeccCce--------------EEEEeccCCCceEEEEEEecCCEEEEeecC
Confidence 789999999999999999999999999999999987 889999999999999999999999999999
Q ss_pred CcEEEEeCCCCCChhhh
Q psy11100 92 GLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 92 ~~i~~w~~~~~~~~~~~ 108 (110)
|+|+.||+...++.+++
T Consensus 414 GtVRAwDlkRYrNfRTf 430 (893)
T KOG0291|consen 414 GTVRAWDLKRYRNFRTF 430 (893)
T ss_pred CeEEeeeecccceeeee
Confidence 99999999988877654
No 9
>KOG0265|consensus
Probab=99.65 E-value=2.2e-15 Score=94.36 Aligned_cols=86 Identities=16% Similarity=0.173 Sum_probs=77.9
Q ss_pred CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100 11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE 90 (110)
Q Consensus 11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 90 (110)
.+|.+.|..+.|+|+|.++++|+.|..|.+|++.... +....+++|++.|..+.|.+++..+++++.
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc-------------eN~~~lkgHsgAVM~l~~~~d~s~i~S~gt 110 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC-------------ENFWVLKGHSGAVMELHGMRDGSHILSCGT 110 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc-------------cceeeeccccceeEeeeeccCCCEEEEecC
Confidence 3899999999999999999999999999999987654 134567899999999999999999999999
Q ss_pred CCcEEEEeCCCCCChhhhh
Q psy11100 91 TGLIIVWMLYKCNDDDEWK 109 (110)
Q Consensus 91 ~~~i~~w~~~~~~~~~~~~ 109 (110)
|.+++.||.++|+.+..+|
T Consensus 111 Dk~v~~wD~~tG~~~rk~k 129 (338)
T KOG0265|consen 111 DKTVRGWDAETGKRIRKHK 129 (338)
T ss_pred CceEEEEecccceeeehhc
Confidence 9999999999999987765
No 10
>KOG0272|consensus
Probab=99.65 E-value=7.8e-17 Score=104.41 Aligned_cols=83 Identities=18% Similarity=0.152 Sum_probs=77.7
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 91 (110)
+|...|..++|+|+|++|++++.|.+-++||+.+.. .+....+|+..|.+++|+|+|.++++|+.|
T Consensus 259 gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~--------------ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD 324 (459)
T KOG0272|consen 259 GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKS--------------ELLLQEGHSKGVFSIAFQPDGSLAATGGLD 324 (459)
T ss_pred cchhhheeeeecCCCceeeecccccchhhcccccch--------------hhHhhcccccccceeEecCCCceeeccCcc
Confidence 788999999999999999999999999999999886 556778999999999999999999999999
Q ss_pred CcEEEEeCCCCCChhhh
Q psy11100 92 GLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 92 ~~i~~w~~~~~~~~~~~ 108 (110)
..-++||+++|+.++.+
T Consensus 325 ~~~RvWDlRtgr~im~L 341 (459)
T KOG0272|consen 325 SLGRVWDLRTGRCIMFL 341 (459)
T ss_pred chhheeecccCcEEEEe
Confidence 99999999999988754
No 11
>PTZ00421 coronin; Provisional
Probab=99.63 E-value=6.1e-15 Score=100.06 Aligned_cols=83 Identities=17% Similarity=0.264 Sum_probs=74.2
Q ss_pred CCCCCceEEEEEecCC-CEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100 11 IPNNTKVNCLAWHQNQ-GWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 11 ~~h~~~v~~~~~~p~~-~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 89 (110)
.+|...|.+++|+|++ ..|++++.|+.|++||+.... ....+..|...|.+++|+|+|..+++++
T Consensus 122 ~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~--------------~~~~l~~h~~~V~sla~spdG~lLatgs 187 (493)
T PTZ00421 122 QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK--------------AVEVIKCHSDQITSLEWNLDGSLLCTTS 187 (493)
T ss_pred cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe--------------EEEEEcCCCCceEEEEEECCCCEEEEec
Confidence 4799999999999985 689999999999999999775 5667788999999999999999999999
Q ss_pred CCCcEEEEeCCCCCChhh
Q psy11100 90 ETGLIIVWMLYKCNDDDE 107 (110)
Q Consensus 90 ~~~~i~~w~~~~~~~~~~ 107 (110)
.|+.|++||+++++.+.+
T Consensus 188 ~Dg~IrIwD~rsg~~v~t 205 (493)
T PTZ00421 188 KDKKLNIIDPRDGTIVSS 205 (493)
T ss_pred CCCEEEEEECCCCcEEEE
Confidence 999999999998876543
No 12
>PTZ00421 coronin; Provisional
Probab=99.59 E-value=1.9e-14 Score=97.64 Aligned_cols=90 Identities=14% Similarity=0.174 Sum_probs=72.7
Q ss_pred CCCCCceEEEEEec-CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCC-CeEEEe
Q psy11100 11 IPNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQY-EKLTSS 88 (110)
Q Consensus 11 ~~h~~~v~~~~~~p-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~ 88 (110)
.+|++.|.+++|+| ++..|++++.|+.|++||+..... ... ....+..+.+|...|.+++|+|++ ..++++
T Consensus 72 ~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~----~~~---~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSg 144 (493)
T PTZ00421 72 LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGL----TQN---ISDPIVHLQGHTKKVGIVSFHPSAMNVLASA 144 (493)
T ss_pred eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcc----ccc---cCcceEEecCCCCcEEEEEeCcCCCCEEEEE
Confidence 47999999999999 788999999999999999975420 000 001346678899999999999986 579999
Q ss_pred cCCCcEEEEeCCCCCChhh
Q psy11100 89 DETGLIIVWMLYKCNDDDE 107 (110)
Q Consensus 89 ~~~~~i~~w~~~~~~~~~~ 107 (110)
+.|+.|++||+.++.....
T Consensus 145 s~DgtVrIWDl~tg~~~~~ 163 (493)
T PTZ00421 145 GADMVVNVWDVERGKAVEV 163 (493)
T ss_pred eCCCEEEEEECCCCeEEEE
Confidence 9999999999998765443
No 13
>KOG0295|consensus
Probab=99.57 E-value=3.6e-14 Score=90.88 Aligned_cols=86 Identities=21% Similarity=0.334 Sum_probs=76.4
Q ss_pred ccCCCCCceEEEEEecC---------------CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCe
Q psy11100 9 IAIPNNTKVNCLAWHQN---------------QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKV 73 (110)
Q Consensus 9 ~~~~h~~~v~~~~~~p~---------------~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 73 (110)
....|.-+|.|++|.|+ ++.+++++.|+.+++||+..+. +++++.+|.+.|
T Consensus 272 ~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~--------------cL~tL~ghdnwV 337 (406)
T KOG0295|consen 272 ELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM--------------CLFTLVGHDNWV 337 (406)
T ss_pred hhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe--------------EEEEEeccccee
Confidence 34478889999999661 2589999999999999999997 899999999999
Q ss_pred EEEEEcCCCCeEEEecCCCcEEEEeCCCCCChhhh
Q psy11100 74 RAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 74 ~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~~~ 108 (110)
..++|+|.|++++|+.+|+++++||+.+++.+..+
T Consensus 338 r~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~ 372 (406)
T KOG0295|consen 338 RGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTL 372 (406)
T ss_pred eeeEEcCCCeEEEEEecCCcEEEEEeccceeeecc
Confidence 99999999999999999999999999998876544
No 14
>KOG0279|consensus
Probab=99.57 E-value=2.2e-14 Score=89.24 Aligned_cols=81 Identities=21% Similarity=0.314 Sum_probs=73.4
Q ss_pred CCCceEEEEEecC--CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100 13 NNTKVNCLAWHQN--QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE 90 (110)
Q Consensus 13 h~~~v~~~~~~p~--~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 90 (110)
+.+-|+|+.|+|+ ...+++++.|+.|++||+.... ....+.+|++.++.+++||||.++++++.
T Consensus 147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~--------------l~~~~~gh~~~v~t~~vSpDGslcasGgk 212 (315)
T KOG0279|consen 147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ--------------LRTTFIGHSGYVNTVTVSPDGSLCASGGK 212 (315)
T ss_pred CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc--------------hhhccccccccEEEEEECCCCCEEecCCC
Confidence 4788999999997 6789999999999999999876 56778899999999999999999999999
Q ss_pred CCcEEEEeCCCCCChhh
Q psy11100 91 TGLIIVWMLYKCNDDDE 107 (110)
Q Consensus 91 ~~~i~~w~~~~~~~~~~ 107 (110)
||.+.+||++.++.+..
T Consensus 213 dg~~~LwdL~~~k~lys 229 (315)
T KOG0279|consen 213 DGEAMLWDLNEGKNLYS 229 (315)
T ss_pred CceEEEEEccCCceeEe
Confidence 99999999999887543
No 15
>KOG0318|consensus
Probab=99.57 E-value=4.5e-14 Score=94.01 Aligned_cols=83 Identities=20% Similarity=0.435 Sum_probs=75.1
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEee---ccCCCeEEEEEcCCCCeEEEe
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQ---GHSGKVRAIIWNEQYEKLTSS 88 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~s~ 88 (110)
.|..-|.|+.|+|||+++++.+.||.+.+||-.++. ....+. .|.+.|..++|+||+..++++
T Consensus 188 ~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge--------------~vg~l~~~~aHkGsIfalsWsPDs~~~~T~ 253 (603)
T KOG0318|consen 188 EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGE--------------KVGELEDSDAHKGSIFALSWSPDSTQFLTV 253 (603)
T ss_pred ccccceeeEEECCCCCeEEEecCCccEEEEcCCCcc--------------EEEEecCCCCccccEEEEEECCCCceEEEe
Confidence 577889999999999999999999999999999887 345555 799999999999999999999
Q ss_pred cCCCcEEEEeCCCCCChhhh
Q psy11100 89 DETGLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 89 ~~~~~i~~w~~~~~~~~~~~ 108 (110)
+.|.++++||+.+++.+.++
T Consensus 254 SaDkt~KIWdVs~~slv~t~ 273 (603)
T KOG0318|consen 254 SADKTIKIWDVSTNSLVSTW 273 (603)
T ss_pred cCCceEEEEEeeccceEEEe
Confidence 99999999999999887765
No 16
>KOG0275|consensus
Probab=99.57 E-value=3e-15 Score=95.31 Aligned_cols=99 Identities=20% Similarity=0.376 Sum_probs=79.7
Q ss_pred eeeeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe
Q psy11100 5 LSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK 84 (110)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 84 (110)
+.+.|.++..+.+.|-.|+|||++|++|+.||.+.+|+..+++-. + +-.++.-..+--+...|.|+.||.|.+.
T Consensus 204 l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlr-K-----DLkYQAqd~fMMmd~aVlci~FSRDsEM 277 (508)
T KOG0275|consen 204 LARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLR-K-----DLKYQAQDNFMMMDDAVLCISFSRDSEM 277 (508)
T ss_pred hhhheecccccchhheeeCCCCceEeeccccceeeeehhccchhh-h-----hhhhhhhcceeecccceEEEeecccHHH
Confidence 456678888899999999999999999999999999999876411 0 0111112223346789999999999999
Q ss_pred EEEecCCCcEEEEeCCCCCChhhhh
Q psy11100 85 LTSSDETGLIIVWMLYKCNDDDEWK 109 (110)
Q Consensus 85 l~s~~~~~~i~~w~~~~~~~~~~~~ 109 (110)
+++++.||.|++|.+++|.+++.+-
T Consensus 278 lAsGsqDGkIKvWri~tG~ClRrFd 302 (508)
T KOG0275|consen 278 LASGSQDGKIKVWRIETGQCLRRFD 302 (508)
T ss_pred hhccCcCCcEEEEEEecchHHHHhh
Confidence 9999999999999999999988664
No 17
>KOG0645|consensus
Probab=99.55 E-value=1.2e-13 Score=85.69 Aligned_cols=81 Identities=17% Similarity=0.403 Sum_probs=72.9
Q ss_pred cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100 10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 89 (110)
..+|+-.|..++|+|.|++|++++.|.++.+|.-.... +++..++.+|.++|.+++||++|.+|++++
T Consensus 57 d~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~e------------fecv~~lEGHEnEVK~Vaws~sG~~LATCS 124 (312)
T KOG0645|consen 57 DDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGE------------FECVATLEGHENEVKCVAWSASGNYLATCS 124 (312)
T ss_pred cccchheeeeeeecCCCcEEEEeeccceEEEeecCCCc------------eeEEeeeeccccceeEEEEcCCCCEEEEee
Confidence 34799999999999999999999999999999877554 347788999999999999999999999999
Q ss_pred CCCcEEEEeCCCC
Q psy11100 90 ETGLIIVWMLYKC 102 (110)
Q Consensus 90 ~~~~i~~w~~~~~ 102 (110)
.|.++.+|....+
T Consensus 125 RDKSVWiWe~ded 137 (312)
T KOG0645|consen 125 RDKSVWIWEIDED 137 (312)
T ss_pred CCCeEEEEEecCC
Confidence 9999999988743
No 18
>KOG1273|consensus
Probab=99.54 E-value=2.1e-14 Score=90.88 Aligned_cols=79 Identities=22% Similarity=0.409 Sum_probs=72.3
Q ss_pred eEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEE
Q psy11100 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIV 96 (110)
Q Consensus 17 v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~ 96 (110)
..|+.|++.|.++|.|+.+|.|.+||..+.. ....+..|..+|.+++||++|+.|++++.|..+.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~--------------iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~l 91 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR--------------IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKL 91 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc--------------hhhhhhccccceeEEEecCCCCEeeeecCCceeEE
Confidence 7889999999999999999999999999876 55778899999999999999999999999999999
Q ss_pred EeCCCCCChhhhh
Q psy11100 97 WMLYKCNDDDEWK 109 (110)
Q Consensus 97 w~~~~~~~~~~~~ 109 (110)
||+.+|..+.++|
T Consensus 92 wDl~~gs~l~rir 104 (405)
T KOG1273|consen 92 WDLLKGSPLKRIR 104 (405)
T ss_pred EeccCCCceeEEE
Confidence 9999998765543
No 19
>KOG0285|consensus
Probab=99.54 E-value=7.5e-14 Score=89.66 Aligned_cols=86 Identities=23% Similarity=0.339 Sum_probs=80.1
Q ss_pred ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100 9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS 88 (110)
Q Consensus 9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 88 (110)
...+|.+-|.|+++.|.++++++|+.|++++|||+.++. ...++.+|...|..+++|+...++.++
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~--------------LkltltGhi~~vr~vavS~rHpYlFs~ 211 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ--------------LKLTLTGHIETVRGVAVSKRHPYLFSA 211 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe--------------EEEeecchhheeeeeeecccCceEEEe
Confidence 345899999999999999999999999999999999987 678889999999999999999999999
Q ss_pred cCCCcEEEEeCCCCCChhhh
Q psy11100 89 DETGLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 89 ~~~~~i~~w~~~~~~~~~~~ 108 (110)
+.|+.|++||++.++.+++.
T Consensus 212 gedk~VKCwDLe~nkvIR~Y 231 (460)
T KOG0285|consen 212 GEDKQVKCWDLEYNKVIRHY 231 (460)
T ss_pred cCCCeeEEEechhhhhHHHh
Confidence 99999999999999988764
No 20
>KOG0319|consensus
Probab=99.54 E-value=7.9e-14 Score=95.65 Aligned_cols=85 Identities=19% Similarity=0.301 Sum_probs=79.9
Q ss_pred cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100 10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 89 (110)
..+|+-+|.|+.|+|..+++++++.|++|++|.+.... ++.++.+|+..|..+.|-.+|..|+|++
T Consensus 501 LsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS--------------ClkT~eGH~~aVlra~F~~~~~qliS~~ 566 (775)
T KOG0319|consen 501 LSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS--------------CLKTFEGHTSAVLRASFIRNGKQLISAG 566 (775)
T ss_pred eeCCccceEEEEeccccceeEeccCCceEEEEEeccce--------------eeeeecCccceeEeeeeeeCCcEEEecc
Confidence 34899999999999999999999999999999999887 8899999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCChhhh
Q psy11100 90 ETGLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 90 ~~~~i~~w~~~~~~~~~~~ 108 (110)
.||.+++|++.++.+...+
T Consensus 567 adGliKlWnikt~eC~~tl 585 (775)
T KOG0319|consen 567 ADGLIKLWNIKTNECEMTL 585 (775)
T ss_pred CCCcEEEEeccchhhhhhh
Confidence 9999999999999887665
No 21
>KOG0286|consensus
Probab=99.53 E-value=9e-14 Score=87.14 Aligned_cols=82 Identities=13% Similarity=0.210 Sum_probs=76.5
Q ss_pred cCCCCCceEEEEEec-CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100 10 AIPNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS 88 (110)
Q Consensus 10 ~~~h~~~v~~~~~~p-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 88 (110)
.-+|++.|.++.++| +++.+++|+.|..-++||++.+. ..+++.+|..-|+.++|.|+|.-|+++
T Consensus 182 f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~--------------c~qtF~ghesDINsv~ffP~G~afatG 247 (343)
T KOG0286|consen 182 FHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ--------------CVQTFEGHESDINSVRFFPSGDAFATG 247 (343)
T ss_pred ecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc--------------eeEeecccccccceEEEccCCCeeeec
Confidence 348999999999999 89999999999999999999987 789999999999999999999999999
Q ss_pred cCCCcEEEEeCCCCCCh
Q psy11100 89 DETGLIIVWMLYKCNDD 105 (110)
Q Consensus 89 ~~~~~i~~w~~~~~~~~ 105 (110)
+.|++.++||++..+.+
T Consensus 248 SDD~tcRlyDlRaD~~~ 264 (343)
T KOG0286|consen 248 SDDATCRLYDLRADQEL 264 (343)
T ss_pred CCCceeEEEeecCCcEE
Confidence 99999999999987654
No 22
>KOG0315|consensus
Probab=99.53 E-value=8.3e-14 Score=85.79 Aligned_cols=83 Identities=23% Similarity=0.391 Sum_probs=73.2
Q ss_pred CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100 11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE 90 (110)
Q Consensus 11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 90 (110)
.+|+..|+.+.|.-+|+++.+|+.||.++|||++... .+....+...|+++..+|+...|++++.
T Consensus 80 e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~---------------~qR~~~~~spVn~vvlhpnQteLis~dq 144 (311)
T KOG0315|consen 80 EGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS---------------CQRNYQHNSPVNTVVLHPNQTELISGDQ 144 (311)
T ss_pred eccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc---------------cchhccCCCCcceEEecCCcceEEeecC
Confidence 3789999999999999999999999999999999854 2334456689999999999999999999
Q ss_pred CCcEEEEeCCCCCChhhh
Q psy11100 91 TGLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 91 ~~~i~~w~~~~~~~~~~~ 108 (110)
+|.|++||+.......++
T Consensus 145 sg~irvWDl~~~~c~~~l 162 (311)
T KOG0315|consen 145 SGNIRVWDLGENSCTHEL 162 (311)
T ss_pred CCcEEEEEccCCcccccc
Confidence 999999999998877665
No 23
>KOG0316|consensus
Probab=99.53 E-value=5.7e-14 Score=86.00 Aligned_cols=87 Identities=15% Similarity=0.250 Sum_probs=81.0
Q ss_pred ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100 9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS 88 (110)
Q Consensus 9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 88 (110)
+...++++|.++.|+-+|++.++++.|.++++|+...+. ++.+..+|..+|..++.+.|...|+++
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~--------------liktYsghG~EVlD~~~s~Dnskf~s~ 77 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA--------------LIKTYSGHGHEVLDAALSSDNSKFASC 77 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccc--------------eeeeecCCCceeeeccccccccccccC
Confidence 345789999999999999999999999999999999887 889999999999999999999999999
Q ss_pred cCCCcEEEEeCCCCCChhhhh
Q psy11100 89 DETGLIIVWMLYKCNDDDEWK 109 (110)
Q Consensus 89 ~~~~~i~~w~~~~~~~~~~~~ 109 (110)
+.|..+.+||+++|+..+.++
T Consensus 78 GgDk~v~vwDV~TGkv~Rr~r 98 (307)
T KOG0316|consen 78 GGDKAVQVWDVNTGKVDRRFR 98 (307)
T ss_pred CCCceEEEEEcccCeeeeecc
Confidence 999999999999999988775
No 24
>KOG0289|consensus
Probab=99.53 E-value=5.2e-14 Score=91.97 Aligned_cols=78 Identities=24% Similarity=0.413 Sum_probs=71.4
Q ss_pred CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100 15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLI 94 (110)
Q Consensus 15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i 94 (110)
-.+++.+|+|||-.+++|..|+.|++||+.+.. ....|.+|++.|..++|+.+|.++++++.|+.|
T Consensus 348 v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~--------------~~a~Fpght~~vk~i~FsENGY~Lat~add~~V 413 (506)
T KOG0289|consen 348 VEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT--------------NVAKFPGHTGPVKAISFSENGYWLATAADDGSV 413 (506)
T ss_pred ceeEEeeEcCCceEEeccCCCceEEEEEcCCcc--------------ccccCCCCCCceeEEEeccCceEEEEEecCCeE
Confidence 358899999999999999999999999999886 567788999999999999999999999999999
Q ss_pred EEEeCCCCCChh
Q psy11100 95 IVWMLYKCNDDD 106 (110)
Q Consensus 95 ~~w~~~~~~~~~ 106 (110)
++||+++-+++-
T Consensus 414 ~lwDLRKl~n~k 425 (506)
T KOG0289|consen 414 KLWDLRKLKNFK 425 (506)
T ss_pred EEEEehhhcccc
Confidence 999999876654
No 25
>KOG0284|consensus
Probab=99.53 E-value=1.9e-14 Score=93.36 Aligned_cols=83 Identities=19% Similarity=0.318 Sum_probs=75.0
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 91 (110)
.|...|.+++|+|....+++++.||.++|||..... ....+.+|...|.+++|+|....+++++.|
T Consensus 178 hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k--------------ee~vL~GHgwdVksvdWHP~kgLiasgskD 243 (464)
T KOG0284|consen 178 HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK--------------EERVLRGHGWDVKSVDWHPTKGLIASGSKD 243 (464)
T ss_pred hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCc--------------hhheeccCCCCcceeccCCccceeEEccCC
Confidence 455899999999999999999999999999998765 346679999999999999999999999999
Q ss_pred CcEEEEeCCCCCChhhh
Q psy11100 92 GLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 92 ~~i~~w~~~~~~~~~~~ 108 (110)
..|++||.++|+.+..+
T Consensus 244 nlVKlWDprSg~cl~tl 260 (464)
T KOG0284|consen 244 NLVKLWDPRSGSCLATL 260 (464)
T ss_pred ceeEeecCCCcchhhhh
Confidence 99999999999988765
No 26
>PTZ00420 coronin; Provisional
Probab=99.53 E-value=2.2e-13 Score=93.59 Aligned_cols=89 Identities=20% Similarity=0.298 Sum_probs=70.5
Q ss_pred CCCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEe
Q psy11100 11 IPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSS 88 (110)
Q Consensus 11 ~~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~ 88 (110)
.+|.+.|.+++|+|+ +..|++|+.|+.+++|++...... ..... .....+.+|...|.+++|+|++.. ++++
T Consensus 71 ~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~---~~~i~---~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES---VKEIK---DPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc---ccccc---cceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 479999999999997 789999999999999999754200 00000 123456789999999999999876 5788
Q ss_pred cCCCcEEEEeCCCCCCh
Q psy11100 89 DETGLIIVWMLYKCNDD 105 (110)
Q Consensus 89 ~~~~~i~~w~~~~~~~~ 105 (110)
+.|+.|++||+++++..
T Consensus 145 S~DgtIrIWDl~tg~~~ 161 (568)
T PTZ00420 145 GFDSFVNIWDIENEKRA 161 (568)
T ss_pred eCCCeEEEEECCCCcEE
Confidence 99999999999988644
No 27
>KOG0264|consensus
Probab=99.52 E-value=1.4e-13 Score=89.80 Aligned_cols=79 Identities=24% Similarity=0.405 Sum_probs=69.7
Q ss_pred cCCCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC-eEEE
Q psy11100 10 AIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE-KLTS 87 (110)
Q Consensus 10 ~~~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s 87 (110)
..+|+++|.|++|+|- +..||+|+.|++|++||++... +.+.++.+|...|..+.|||... .|++
T Consensus 268 ~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~-------------~~lh~~e~H~dev~~V~WSPh~etvLAS 334 (422)
T KOG0264|consen 268 VKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN-------------KPLHTFEGHEDEVFQVEWSPHNETVLAS 334 (422)
T ss_pred ccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc-------------cCceeccCCCcceEEEEeCCCCCceeEe
Confidence 3479999999999995 5678999999999999999887 25788999999999999999755 5999
Q ss_pred ecCCCcEEEEeCCC
Q psy11100 88 SDETGLIIVWMLYK 101 (110)
Q Consensus 88 ~~~~~~i~~w~~~~ 101 (110)
++.|+.+.+||+..
T Consensus 335 Sg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 335 SGTDRRLNVWDLSR 348 (422)
T ss_pred cccCCcEEEEeccc
Confidence 99999999999865
No 28
>PTZ00420 coronin; Provisional
Probab=99.51 E-value=3.1e-13 Score=92.84 Aligned_cols=83 Identities=12% Similarity=0.228 Sum_probs=69.7
Q ss_pred CCCCCceEEEEEecCCCE-EEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100 11 IPNNTKVNCLAWHQNQGW-IAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 11 ~~h~~~v~~~~~~p~~~~-l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 89 (110)
.+|...|.+++|+|++.. +++++.|+.+++||+.... ....+. +...|.+++|+|+|..+++++
T Consensus 122 ~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~--------------~~~~i~-~~~~V~SlswspdG~lLat~s 186 (568)
T PTZ00420 122 KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK--------------RAFQIN-MPKKLSSLKWNIKGNLLSGTC 186 (568)
T ss_pred ecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc--------------EEEEEe-cCCcEEEEEECCCCCEEEEEe
Confidence 478999999999999875 5788999999999998775 333443 457899999999999999999
Q ss_pred CCCcEEEEeCCCCCChhhh
Q psy11100 90 ETGLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 90 ~~~~i~~w~~~~~~~~~~~ 108 (110)
.|+.|++||++++..+.++
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred cCCEEEEEECCCCcEEEEE
Confidence 9999999999998765543
No 29
>KOG0315|consensus
Probab=99.51 E-value=3.2e-13 Score=83.27 Aligned_cols=84 Identities=15% Similarity=0.168 Sum_probs=75.1
Q ss_pred CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100 11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE 90 (110)
Q Consensus 11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 90 (110)
..|++.+..+.+|||+++|++++.|.+++||+.+... .....+.+|...+...+||-+|++|++++.
T Consensus 212 ~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~-------------kle~~l~gh~rWvWdc~FS~dg~YlvTass 278 (311)
T KOG0315|consen 212 QAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF-------------KLELVLTGHQRWVWDCAFSADGEYLVTASS 278 (311)
T ss_pred ecccceEEEEEECCCCcEEEeecCCceEEEEecCCce-------------eeEEEeecCCceEEeeeeccCccEEEecCC
Confidence 3689999999999999999999999999999998763 145677889899999999999999999999
Q ss_pred CCcEEEEeCCCCCChhh
Q psy11100 91 TGLIIVWMLYKCNDDDE 107 (110)
Q Consensus 91 ~~~i~~w~~~~~~~~~~ 107 (110)
|+..++|+++.++.+++
T Consensus 279 d~~~rlW~~~~~k~v~q 295 (311)
T KOG0315|consen 279 DHTARLWDLSAGKEVRQ 295 (311)
T ss_pred CCceeecccccCceeee
Confidence 99999999999886554
No 30
>KOG0279|consensus
Probab=99.50 E-value=3e-13 Score=84.27 Aligned_cols=80 Identities=16% Similarity=0.282 Sum_probs=73.4
Q ss_pred ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100 9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS 88 (110)
Q Consensus 9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 88 (110)
-..+|.-.|..+..++||++.++++.|+.+++||+..+. ..+.+.+|..-|.+++|+++...++++
T Consensus 58 ~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~--------------~t~~f~GH~~dVlsva~s~dn~qivSG 123 (315)
T KOG0279|consen 58 RLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE--------------STRRFVGHTKDVLSVAFSTDNRQIVSG 123 (315)
T ss_pred eeeccceEecceEEccCCceEEeccccceEEEEEecCCc--------------EEEEEEecCCceEEEEecCCCceeecC
Confidence 344798899999999999999999999999999999986 678899999999999999999999999
Q ss_pred cCCCcEEEEeCCCC
Q psy11100 89 DETGLIIVWMLYKC 102 (110)
Q Consensus 89 ~~~~~i~~w~~~~~ 102 (110)
+.|.+|.+||.-.+
T Consensus 124 SrDkTiklwnt~g~ 137 (315)
T KOG0279|consen 124 SRDKTIKLWNTLGV 137 (315)
T ss_pred CCcceeeeeeeccc
Confidence 99999999997543
No 31
>KOG0273|consensus
Probab=99.49 E-value=3.3e-13 Score=88.90 Aligned_cols=98 Identities=18% Similarity=0.289 Sum_probs=75.5
Q ss_pred CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCc------C--------Cccccc--------------------
Q psy11100 11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKES------T--------GQVAAA-------------------- 56 (110)
Q Consensus 11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~------~--------~~~~~~-------------------- 56 (110)
.+|+++|.++.|+|.|.+|++++.|+++++|+....... . .+..+.
T Consensus 356 ~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~ 435 (524)
T KOG0273|consen 356 IGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVK 435 (524)
T ss_pred ecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEE
Confidence 379999999999999999999999999999985432110 0 000000
Q ss_pred ---ccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCChhhh
Q psy11100 57 ---NVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 57 ---~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~~~ 108 (110)
.....++..+-.|...|.+++|+|+|.++++++.|+.|.+|+.++++.+.+.
T Consensus 436 lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~ 490 (524)
T KOG0273|consen 436 LWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY 490 (524)
T ss_pred EEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEee
Confidence 0011136677789999999999999999999999999999999998876654
No 32
>KOG0282|consensus
Probab=99.48 E-value=1.4e-14 Score=95.39 Aligned_cols=85 Identities=18% Similarity=0.310 Sum_probs=77.9
Q ss_pred CCCCCceEEEEEec-CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100 11 IPNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 11 ~~h~~~v~~~~~~p-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 89 (110)
.+|+..|+++.|.| .+.++++++.|+.|++|++.... .+++++.+|...|..++|+++|..|+|++
T Consensus 211 ~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~-------------~~lrtf~gH~k~Vrd~~~s~~g~~fLS~s 277 (503)
T KOG0282|consen 211 SGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR-------------RCLRTFKGHRKPVRDASFNNCGTSFLSAS 277 (503)
T ss_pred cCCccccchhhhccceeeEEEecCCCceEEEEEEecCc-------------ceehhhhcchhhhhhhhccccCCeeeeee
Confidence 38999999999999 79999999999999999998743 27899999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCChhhh
Q psy11100 90 ETGLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 90 ~~~~i~~w~~~~~~~~~~~ 108 (110)
.|..|++||.++|+.+..+
T Consensus 278 fD~~lKlwDtETG~~~~~f 296 (503)
T KOG0282|consen 278 FDRFLKLWDTETGQVLSRF 296 (503)
T ss_pred cceeeeeeccccceEEEEE
Confidence 9999999999999987654
No 33
>KOG0275|consensus
Probab=99.47 E-value=6e-14 Score=89.46 Aligned_cols=88 Identities=19% Similarity=0.354 Sum_probs=81.4
Q ss_pred eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100 8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS 87 (110)
Q Consensus 8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 87 (110)
++...|+..|+|+.|+.|+.-+.+++.|..+++..+.+++ ++..+.+|++.|+...|.++|..+++
T Consensus 300 rFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK--------------~LKEfrGHsSyvn~a~ft~dG~~iis 365 (508)
T KOG0275|consen 300 RFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGK--------------CLKEFRGHSSYVNEATFTDDGHHIIS 365 (508)
T ss_pred HhhhhhccCeeEEEEccCcchhhcccccceEEEeccccch--------------hHHHhcCccccccceEEcCCCCeEEE
Confidence 4555799999999999999999999999999999999987 78889999999999999999999999
Q ss_pred ecCCCcEEEEeCCCCCChhhhh
Q psy11100 88 SDETGLIIVWMLYKCNDDDEWK 109 (110)
Q Consensus 88 ~~~~~~i~~w~~~~~~~~~~~~ 109 (110)
++.||++++|+..++.++.++|
T Consensus 366 aSsDgtvkvW~~KtteC~~Tfk 387 (508)
T KOG0275|consen 366 ASSDGTVKVWHGKTTECLSTFK 387 (508)
T ss_pred ecCCccEEEecCcchhhhhhcc
Confidence 9999999999999998887765
No 34
>KOG2041|consensus
Probab=99.47 E-value=4.7e-13 Score=92.57 Aligned_cols=109 Identities=55% Similarity=0.912 Sum_probs=95.9
Q ss_pred CceeeeeeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCc-CCcccccccceeeeEEeeccCCCeEEEEEc
Q psy11100 1 MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKES-TGQVAAANVNLAMNQSLQGHSGKVRAIIWN 79 (110)
Q Consensus 1 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 79 (110)
|+.|++|++.++......|+.|+.+..++++|+.||.+++..+.+.... ++..-.+..++.+.+++.+|+..|.-+.|+
T Consensus 1 Mfvylskki~iPnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWN 80 (1189)
T KOG2041|consen 1 MFVYLSKKIGIPNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWN 80 (1189)
T ss_pred CceEeecccCCCCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEec
Confidence 8999999999999999999999999999999999999999888765321 112224566777889999999999999999
Q ss_pred CCCCeEEEecCCCcEEEEeCCCCCChhhhh
Q psy11100 80 EQYEKLTSSDETGLIIVWMLYKCNDDDEWK 109 (110)
Q Consensus 80 ~~~~~l~s~~~~~~i~~w~~~~~~~~~~~~ 109 (110)
.+.+.+-+++.+|.|.+|.+.+|+|..||.
T Consensus 81 e~~QKLTtSDt~GlIiVWmlykgsW~EEMi 110 (1189)
T KOG2041|consen 81 ENNQKLTTSDTSGLIIVWMLYKGSWCEEMI 110 (1189)
T ss_pred cccccccccCCCceEEEEeeecccHHHHHh
Confidence 999999999999999999999999999984
No 35
>KOG0285|consensus
Probab=99.47 E-value=3.6e-13 Score=86.57 Aligned_cols=84 Identities=18% Similarity=0.300 Sum_probs=76.6
Q ss_pred cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100 10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 89 (110)
+-+|-+.|.|++.+|.-..|++++.|..+++||++... ....+.+|.+.|..+.+.|....+++++
T Consensus 231 YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~--------------~V~~l~GH~~~V~~V~~~~~dpqvit~S 296 (460)
T KOG0285|consen 231 YHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA--------------SVHVLSGHTNPVASVMCQPTDPQVITGS 296 (460)
T ss_pred hccccceeEEEeccccceeEEecCCcceEEEeeecccc--------------eEEEecCCCCcceeEEeecCCCceEEec
Confidence 34899999999999999999999999999999999876 6788999999999999999888899999
Q ss_pred CCCcEEEEeCCCCCChhh
Q psy11100 90 ETGLIIVWMLYKCNDDDE 107 (110)
Q Consensus 90 ~~~~i~~w~~~~~~~~~~ 107 (110)
.|++|++||++.|+-...
T Consensus 297 ~D~tvrlWDl~agkt~~t 314 (460)
T KOG0285|consen 297 HDSTVRLWDLRAGKTMIT 314 (460)
T ss_pred CCceEEEeeeccCceeEe
Confidence 999999999998876543
No 36
>KOG0319|consensus
Probab=99.46 E-value=2.4e-13 Score=93.34 Aligned_cols=86 Identities=19% Similarity=0.349 Sum_probs=78.4
Q ss_pred ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100 9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS 88 (110)
Q Consensus 9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 88 (110)
....|.-.|++++.+|+..++++|+.|.+.++|+++... ...++.+|+..|.++.|+|.++.++++
T Consensus 458 t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~--------------l~~vLsGH~RGvw~V~Fs~~dq~laT~ 523 (775)
T KOG0319|consen 458 TERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR--------------LLGVLSGHTRGVWCVSFSKNDQLLATC 523 (775)
T ss_pred HHHhhcccccceEecCCCceEEecccccceeeecccCce--------------EEEEeeCCccceEEEEeccccceeEec
Confidence 344688899999999999999999999999999999665 788999999999999999999999999
Q ss_pred cCCCcEEEEeCCCCCChhhh
Q psy11100 89 DETGLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 89 ~~~~~i~~w~~~~~~~~~~~ 108 (110)
+.|++|++|.+.+.+++.++
T Consensus 524 SgD~TvKIW~is~fSClkT~ 543 (775)
T KOG0319|consen 524 SGDKTVKIWSISTFSCLKTF 543 (775)
T ss_pred cCCceEEEEEeccceeeeee
Confidence 99999999999988876554
No 37
>KOG0283|consensus
Probab=99.45 E-value=4.1e-13 Score=92.77 Aligned_cols=80 Identities=13% Similarity=0.226 Sum_probs=68.6
Q ss_pred cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcC-CCCeEEEe
Q psy11100 10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNE-QYEKLTSS 88 (110)
Q Consensus 10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~ 88 (110)
..||++.|.++.|+.+ .+|++++.|.+|++|++.... ++.+| .|.+.|+|++|+| |.++|++|
T Consensus 365 f~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~--------------CL~~F-~HndfVTcVaFnPvDDryFiSG 428 (712)
T KOG0283|consen 365 FKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKE--------------CLKVF-SHNDFVTCVAFNPVDDRYFISG 428 (712)
T ss_pred hhccchhheecccccC-CeeEeccccccEEeecCCCcc--------------eeeEE-ecCCeeEEEEecccCCCcEeec
Confidence 3489999999999974 578899999999999999765 55555 5889999999999 56679999
Q ss_pred cCCCcEEEEeCCCCCCh
Q psy11100 89 DETGLIIVWMLYKCNDD 105 (110)
Q Consensus 89 ~~~~~i~~w~~~~~~~~ 105 (110)
+.|+.+++|++...+..
T Consensus 429 SLD~KvRiWsI~d~~Vv 445 (712)
T KOG0283|consen 429 SLDGKVRLWSISDKKVV 445 (712)
T ss_pred ccccceEEeecCcCeeE
Confidence 99999999999877653
No 38
>KOG0292|consensus
Probab=99.44 E-value=4e-13 Score=94.29 Aligned_cols=81 Identities=23% Similarity=0.357 Sum_probs=77.0
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 91 (110)
.|.++|..+.|+|.+.++++|+.|..+++|+....+ +++++.+|-+.|..+.|++.-.+++|+++|
T Consensus 49 eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr--------------clftL~GHlDYVRt~~FHheyPWIlSASDD 114 (1202)
T KOG0292|consen 49 EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR--------------CLFTLLGHLDYVRTVFFHHEYPWILSASDD 114 (1202)
T ss_pred ccCCccceeeecCCCCeEEecCCccEEEEEecccce--------------ehhhhccccceeEEeeccCCCceEEEccCC
Confidence 699999999999999999999999999999999887 889999999999999999999999999999
Q ss_pred CcEEEEeCCCCCChh
Q psy11100 92 GLIIVWMLYKCNDDD 106 (110)
Q Consensus 92 ~~i~~w~~~~~~~~~ 106 (110)
.+|++||..+++.+-
T Consensus 115 QTIrIWNwqsr~~ia 129 (1202)
T KOG0292|consen 115 QTIRIWNWQSRKCIA 129 (1202)
T ss_pred CeEEEEeccCCceEE
Confidence 999999999887654
No 39
>KOG0645|consensus
Probab=99.44 E-value=3.7e-12 Score=79.27 Aligned_cols=82 Identities=21% Similarity=0.360 Sum_probs=73.0
Q ss_pred eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100 8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS 87 (110)
Q Consensus 8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 87 (110)
....||.+.|.|++|+++|++||+++.|.+|.+|.+.... -+.+...+..|++-|..+.|+|...+|++
T Consensus 99 ~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd-----------Efec~aVL~~HtqDVK~V~WHPt~dlL~S 167 (312)
T KOG0645|consen 99 ATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD-----------EFECIAVLQEHTQDVKHVIWHPTEDLLFS 167 (312)
T ss_pred eeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC-----------cEEEEeeeccccccccEEEEcCCcceeEE
Confidence 3445899999999999999999999999999999998554 23467788999999999999999999999
Q ss_pred ecCCCcEEEEeCC
Q psy11100 88 SDETGLIIVWMLY 100 (110)
Q Consensus 88 ~~~~~~i~~w~~~ 100 (110)
++.|++|++|+-.
T Consensus 168 ~SYDnTIk~~~~~ 180 (312)
T KOG0645|consen 168 CSYDNTIKVYRDE 180 (312)
T ss_pred eccCCeEEEEeec
Confidence 9999999999766
No 40
>KOG0286|consensus
Probab=99.44 E-value=3.3e-12 Score=80.24 Aligned_cols=84 Identities=13% Similarity=0.115 Sum_probs=74.6
Q ss_pred eeeeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe
Q psy11100 5 LSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK 84 (110)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 84 (110)
-.+++..+|.++|.++.|++|++.+++++.||.+.|||..+.. -...+.-....|...+|+|.|+.
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Ttn--------------K~haipl~s~WVMtCA~sPSg~~ 111 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTN--------------KVHAIPLPSSWVMTCAYSPSGNF 111 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccc--------------ceeEEecCceeEEEEEECCCCCe
Confidence 4567888999999999999999999999999999999999876 23455666788999999999999
Q ss_pred EEEecCCCcEEEEeCCCC
Q psy11100 85 LTSSDETGLIIVWMLYKC 102 (110)
Q Consensus 85 l~s~~~~~~i~~w~~~~~ 102 (110)
+++++.|+...+|++.+.
T Consensus 112 VAcGGLdN~Csiy~ls~~ 129 (343)
T KOG0286|consen 112 VACGGLDNKCSIYPLSTR 129 (343)
T ss_pred EEecCcCceeEEEecccc
Confidence 999999999999998854
No 41
>KOG0640|consensus
Probab=99.44 E-value=5e-13 Score=84.75 Aligned_cols=98 Identities=13% Similarity=0.256 Sum_probs=79.1
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcC--Ccc--cccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKEST--GQV--AAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS 87 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 87 (110)
.|++++.+-+|+|||.++++|+.|.+++++|+....... ... ...+.....++++..|...|+++.|+|....|++
T Consensus 110 ~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS 189 (430)
T KOG0640|consen 110 SHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILIS 189 (430)
T ss_pred ecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEe
Confidence 589999999999999999999999999999987432111 111 1112222368899999999999999999999999
Q ss_pred ecCCCcEEEEeCCCCCChhhhh
Q psy11100 88 SDETGLIIVWMLYKCNDDDEWK 109 (110)
Q Consensus 88 ~~~~~~i~~w~~~~~~~~~~~~ 109 (110)
++.|++|+++|+.+....+.+|
T Consensus 190 ~srD~tvKlFDfsK~saKrA~K 211 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKTSAKRAFK 211 (430)
T ss_pred ccCCCeEEEEecccHHHHHHHH
Confidence 9999999999999887766654
No 42
>KOG0973|consensus
Probab=99.44 E-value=1.1e-12 Score=92.81 Aligned_cols=95 Identities=20% Similarity=0.322 Sum_probs=79.4
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCc--CCc--ccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKES--TGQ--VAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS 87 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 87 (110)
.|.+.|.|+.|+|||+++|+|+.|+.+.+|........ .+. .....++|.....+.+|...|..+.|+|++.++++
T Consensus 67 ~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS 146 (942)
T KOG0973|consen 67 DHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVS 146 (942)
T ss_pred cccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEE
Confidence 68999999999999999999999999999988741100 111 12446788888899999999999999999999999
Q ss_pred ecCCCcEEEEeCCCCCChh
Q psy11100 88 SDETGLIIVWMLYKCNDDD 106 (110)
Q Consensus 88 ~~~~~~i~~w~~~~~~~~~ 106 (110)
++.|++|.+||..+...+.
T Consensus 147 ~s~DnsViiwn~~tF~~~~ 165 (942)
T KOG0973|consen 147 VSLDNSVIIWNAKTFELLK 165 (942)
T ss_pred ecccceEEEEccccceeee
Confidence 9999999999988765443
No 43
>KOG0318|consensus
Probab=99.43 E-value=1.3e-12 Score=87.27 Aligned_cols=83 Identities=10% Similarity=0.260 Sum_probs=71.6
Q ss_pred ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100 9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS 88 (110)
Q Consensus 9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 88 (110)
....|.+++++++++||+.+|+++...+.+.+||..+.. ........|+..|++++|+|+..+++++
T Consensus 482 ~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~-------------~~~~~w~FHtakI~~~aWsP~n~~vATG 548 (603)
T KOG0318|consen 482 KLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASRE-------------VKTNRWAFHTAKINCVAWSPNNKLVATG 548 (603)
T ss_pred eeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCc-------------eecceeeeeeeeEEEEEeCCCceEEEec
Confidence 345799999999999999999999999999999999865 0123344589999999999999999999
Q ss_pred cCCCcEEEEeCCCCCC
Q psy11100 89 DETGLIIVWMLYKCND 104 (110)
Q Consensus 89 ~~~~~i~~w~~~~~~~ 104 (110)
+.|..|.+|++.+-..
T Consensus 549 SlDt~Viiysv~kP~~ 564 (603)
T KOG0318|consen 549 SLDTNVIIYSVKKPAK 564 (603)
T ss_pred cccceEEEEEccChhh
Confidence 9999999999886543
No 44
>KOG0276|consensus
Probab=99.43 E-value=1.1e-12 Score=89.18 Aligned_cols=90 Identities=19% Similarity=0.152 Sum_probs=79.5
Q ss_pred eeeccCCCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCC--
Q psy11100 6 SKKIAIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQY-- 82 (110)
Q Consensus 6 ~~~~~~~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-- 82 (110)
......+|+-.|.+++|+|. .+.+++++.|++|++|.+.... +.+++.+|...|+++.+-+.|
T Consensus 132 ~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~--------------~nfTl~gHekGVN~Vdyy~~gdk 197 (794)
T KOG0276|consen 132 CEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH--------------PNFTLEGHEKGVNCVDYYTGGDK 197 (794)
T ss_pred eeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC--------------CceeeeccccCcceEEeccCCCc
Confidence 34566799999999999994 6789999999999999999876 789999999999999997755
Q ss_pred CeEEEecCCCcEEEEeCCCCCChhhhh
Q psy11100 83 EKLTSSDETGLIIVWMLYKCNDDDEWK 109 (110)
Q Consensus 83 ~~l~s~~~~~~i~~w~~~~~~~~~~~~ 109 (110)
..++++++|.++++||+.+..++.++.
T Consensus 198 pylIsgaDD~tiKvWDyQtk~CV~TLe 224 (794)
T KOG0276|consen 198 PYLISGADDLTIKVWDYQTKSCVQTLE 224 (794)
T ss_pred ceEEecCCCceEEEeecchHHHHHHhh
Confidence 469999999999999999999888763
No 45
>KOG1407|consensus
Probab=99.43 E-value=5.1e-13 Score=82.75 Aligned_cols=84 Identities=15% Similarity=0.223 Sum_probs=78.3
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 91 (110)
.|.+...|+.|+|+|+++|+|+.|-.+.+||+.... +.+.+..+..+|..+.||.+|++|++++.|
T Consensus 187 AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELi--------------C~R~isRldwpVRTlSFS~dg~~lASaSED 252 (313)
T KOG1407|consen 187 AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELI--------------CERCISRLDWPVRTLSFSHDGRMLASASED 252 (313)
T ss_pred cCCcceEEEEECCCCceEeeccccceeeccChhHhh--------------hheeeccccCceEEEEeccCcceeeccCcc
Confidence 688999999999999999999999999999999886 778888899999999999999999999999
Q ss_pred CcEEEEeCCCCCChhhhh
Q psy11100 92 GLIIVWMLYKCNDDDEWK 109 (110)
Q Consensus 92 ~~i~~w~~~~~~~~~~~~ 109 (110)
..|.+=++++|..+.|++
T Consensus 253 h~IDIA~vetGd~~~eI~ 270 (313)
T KOG1407|consen 253 HFIDIAEVETGDRVWEIP 270 (313)
T ss_pred ceEEeEecccCCeEEEee
Confidence 999999999999887763
No 46
>KOG0284|consensus
Probab=99.41 E-value=5.3e-13 Score=86.75 Aligned_cols=84 Identities=23% Similarity=0.326 Sum_probs=76.2
Q ss_pred cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100 10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 89 (110)
..+|.-.|.++.|+|...++++|++|+.|++||.+++. ++.++..|++.|..+.|+|++.+|++++
T Consensus 218 L~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~--------------cl~tlh~HKntVl~~~f~~n~N~Llt~s 283 (464)
T KOG0284|consen 218 LRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGS--------------CLATLHGHKNTVLAVKFNPNGNWLLTGS 283 (464)
T ss_pred eccCCCCcceeccCCccceeEEccCCceeEeecCCCcc--------------hhhhhhhccceEEEEEEcCCCCeeEEcc
Confidence 35888899999999999999999999999999999987 7888999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCChhh
Q psy11100 90 ETGLIIVWMLYKCNDDDE 107 (110)
Q Consensus 90 ~~~~i~~w~~~~~~~~~~ 107 (110)
.|..++++|+++-+-+..
T Consensus 284 kD~~~kv~DiR~mkEl~~ 301 (464)
T KOG0284|consen 284 KDQSCKVFDIRTMKELFT 301 (464)
T ss_pred CCceEEEEehhHhHHHHH
Confidence 999999999985544443
No 47
>KOG0302|consensus
Probab=99.41 E-value=1.2e-12 Score=84.46 Aligned_cols=85 Identities=22% Similarity=0.445 Sum_probs=70.2
Q ss_pred eccCCCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEE
Q psy11100 8 KIAIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT 86 (110)
Q Consensus 8 ~~~~~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 86 (110)
....+|+..|..++|+|. ...+++++.|++++|||++.+.+ . .....+.|.+-|+-+.||.+..+|+
T Consensus 251 ~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~---~---------~~~~~kAh~sDVNVISWnr~~~lLa 318 (440)
T KOG0302|consen 251 RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK---K---------AAVSTKAHNSDVNVISWNRREPLLA 318 (440)
T ss_pred ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCc---c---------ceeEeeccCCceeeEEccCCcceee
Confidence 344579999999999996 55789999999999999998741 1 1223378888999999999988999
Q ss_pred EecCCCcEEEEeCCCCCC
Q psy11100 87 SSDETGLIIVWMLYKCND 104 (110)
Q Consensus 87 s~~~~~~i~~w~~~~~~~ 104 (110)
+|+.+|++.+||+++-+.
T Consensus 319 sG~DdGt~~iwDLR~~~~ 336 (440)
T KOG0302|consen 319 SGGDDGTLSIWDLRQFKS 336 (440)
T ss_pred ecCCCceEEEEEhhhccC
Confidence 999999999999986443
No 48
>KOG1034|consensus
Probab=99.41 E-value=1.7e-12 Score=82.63 Aligned_cols=84 Identities=12% Similarity=0.229 Sum_probs=72.4
Q ss_pred cCCCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEe---eccCCCeEEEEEcCCCCeE
Q psy11100 10 AIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL---QGHSGKVRAIIWNEQYEKL 85 (110)
Q Consensus 10 ~~~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l 85 (110)
+.+|...|..+.++|+ .+++++++.|.+|++|++.+.. ++..+ .+|.+.|.++.|+++|..+
T Consensus 131 ~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~--------------Cv~VfGG~egHrdeVLSvD~~~~gd~i 196 (385)
T KOG1034|consen 131 YRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV--------------CVAVFGGVEGHRDEVLSVDFSLDGDRI 196 (385)
T ss_pred eeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe--------------EEEEecccccccCcEEEEEEcCCCCee
Confidence 4489999999999997 5789999999999999999876 44444 4689999999999999999
Q ss_pred EEecCCCcEEEEeCCCCCChhh
Q psy11100 86 TSSDETGLIIVWMLYKCNDDDE 107 (110)
Q Consensus 86 ~s~~~~~~i~~w~~~~~~~~~~ 107 (110)
+|++-|.+|.+|++...+....
T Consensus 197 ~ScGmDhslk~W~l~~~~f~~~ 218 (385)
T KOG1034|consen 197 ASCGMDHSLKLWRLNVKEFKNK 218 (385)
T ss_pred eccCCcceEEEEecChhHHhhh
Confidence 9999999999999986555443
No 49
>KOG0273|consensus
Probab=99.41 E-value=1.1e-12 Score=86.46 Aligned_cols=79 Identities=23% Similarity=0.440 Sum_probs=71.8
Q ss_pred CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCc
Q psy11100 14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGL 93 (110)
Q Consensus 14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~ 93 (110)
+..|++++|+.+|..|++|+.+|.+++|+..... +.++..|.++|.++.|+.+|.++++++.|++
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l---------------~~tl~~HkgPI~slKWnk~G~yilS~~vD~t 299 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNL---------------ISTLGQHKGPIFSLKWNKKGTYILSGGVDGT 299 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCchh---------------hhhhhccCCceEEEEEcCCCCEEEeccCCcc
Confidence 4579999999999999999999999999998764 5678889999999999999999999999999
Q ss_pred EEEEeCCCCCChhh
Q psy11100 94 IIVWMLYKCNDDDE 107 (110)
Q Consensus 94 i~~w~~~~~~~~~~ 107 (110)
+.+||..+|.....
T Consensus 300 tilwd~~~g~~~q~ 313 (524)
T KOG0273|consen 300 TILWDAHTGTVKQQ 313 (524)
T ss_pred EEEEeccCceEEEe
Confidence 99999988876543
No 50
>KOG0293|consensus
Probab=99.41 E-value=2.3e-12 Score=84.12 Aligned_cols=89 Identities=16% Similarity=0.260 Sum_probs=77.4
Q ss_pred cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100 10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 89 (110)
...|+.+|..+.|+++|++||+++.|.+.-+|.+.... .+....++.+|...|.-+.||||.+.+++|+
T Consensus 220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~-----------~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg 288 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV-----------HFKLKKTLVGHSQPVSYIMWSPDDRYLLACG 288 (519)
T ss_pred HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc-----------ceeeeeeeecccCceEEEEECCCCCeEEecC
Confidence 34699999999999999999999999999999987654 1235678899999999999999999999999
Q ss_pred CCCcEEEEeCCCCCChhhhh
Q psy11100 90 ETGLIIVWMLYKCNDDDEWK 109 (110)
Q Consensus 90 ~~~~i~~w~~~~~~~~~~~~ 109 (110)
.+..+.+||+.+|.....++
T Consensus 289 ~~e~~~lwDv~tgd~~~~y~ 308 (519)
T KOG0293|consen 289 FDEVLSLWDVDTGDLRHLYP 308 (519)
T ss_pred chHheeeccCCcchhhhhcc
Confidence 99999999999988766543
No 51
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.41 E-value=6.5e-12 Score=77.88 Aligned_cols=81 Identities=28% Similarity=0.466 Sum_probs=71.6
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 91 (110)
+|.++|.++.|+|+++.+++++.++.+++|+..... ....+..|...+..+.|+|++..+++++.+
T Consensus 7 ~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~--------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 72 (289)
T cd00200 7 GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE--------------LLRTLKGHTGPVRDVAASADGTYLASGSSD 72 (289)
T ss_pred ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC--------------cEEEEecCCcceeEEEECCCCCEEEEEcCC
Confidence 799999999999999999999999999999998765 455667788888999999999999999999
Q ss_pred CcEEEEeCCCCCChh
Q psy11100 92 GLIIVWMLYKCNDDD 106 (110)
Q Consensus 92 ~~i~~w~~~~~~~~~ 106 (110)
+.+.+|++.+++...
T Consensus 73 ~~i~i~~~~~~~~~~ 87 (289)
T cd00200 73 KTIRLWDLETGECVR 87 (289)
T ss_pred CeEEEEEcCcccceE
Confidence 999999998865443
No 52
>KOG0296|consensus
Probab=99.40 E-value=4e-12 Score=81.68 Aligned_cols=86 Identities=21% Similarity=0.341 Sum_probs=78.1
Q ss_pred ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100 9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS 88 (110)
Q Consensus 9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 88 (110)
....|++.|.+++.+|+.+++++|+.|-.-.+|++..+. ....+.+|...|.++.||.+|.+|+++
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge--------------~~~eltgHKDSVt~~~FshdgtlLATG 124 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE--------------FAGELTGHKDSVTCCSFSHDGTLLATG 124 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc--------------ceeEecCCCCceEEEEEccCceEEEec
Confidence 344799999999999999999999999999999999987 678889999999999999999999999
Q ss_pred cCCCcEEEEeCCCCCChhhh
Q psy11100 89 DETGLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 89 ~~~~~i~~w~~~~~~~~~~~ 108 (110)
+.+|.|.+|+..++....++
T Consensus 125 dmsG~v~v~~~stg~~~~~~ 144 (399)
T KOG0296|consen 125 DMSGKVLVFKVSTGGEQWKL 144 (399)
T ss_pred CCCccEEEEEcccCceEEEe
Confidence 99999999999988765443
No 53
>KOG0264|consensus
Probab=99.37 E-value=6.1e-12 Score=82.31 Aligned_cols=90 Identities=21% Similarity=0.326 Sum_probs=76.4
Q ss_pred CCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEec
Q psy11100 12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSSD 89 (110)
Q Consensus 12 ~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~ 89 (110)
+|...|.++.|+|. ...|++++.|+.+.+||+......+........+.++++...+|+..|..+.|+|...+ ++|++
T Consensus 314 ~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva 393 (422)
T KOG0264|consen 314 GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA 393 (422)
T ss_pred CCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec
Confidence 79999999999997 56789999999999999987654444344445555678999999999999999999998 88999
Q ss_pred CCCcEEEEeCCC
Q psy11100 90 ETGLIIVWMLYK 101 (110)
Q Consensus 90 ~~~~i~~w~~~~ 101 (110)
.|+.+.+|++..
T Consensus 394 eDN~LqIW~~s~ 405 (422)
T KOG0264|consen 394 EDNILQIWQMAE 405 (422)
T ss_pred CCceEEEeeccc
Confidence 999999999864
No 54
>KOG2394|consensus
Probab=99.36 E-value=1.2e-12 Score=87.58 Aligned_cols=78 Identities=18% Similarity=0.401 Sum_probs=68.6
Q ss_pred CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCc
Q psy11100 14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGL 93 (110)
Q Consensus 14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~ 93 (110)
.+.+...+|+|||+.||+-+.||.++|||..... .+...+.+-+...|++|||||+++++++.|-.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e--------------Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDL 355 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE--------------LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDL 355 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHH--------------HHHHHHhhccceEEEEEcCCccEEEecCCcce
Confidence 3578889999999999999999999999999875 45556667788999999999999999999999
Q ss_pred EEEEeCCCCCCh
Q psy11100 94 IIVWMLYKCNDD 105 (110)
Q Consensus 94 i~~w~~~~~~~~ 105 (110)
|.||.+..++.+
T Consensus 356 VtVwSf~erRVV 367 (636)
T KOG2394|consen 356 VTVWSFEERRVV 367 (636)
T ss_pred EEEEEeccceEE
Confidence 999999877653
No 55
>KOG1445|consensus
Probab=99.36 E-value=1.1e-12 Score=89.69 Aligned_cols=81 Identities=20% Similarity=0.350 Sum_probs=72.1
Q ss_pred ccCCCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100 9 IAIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS 87 (110)
Q Consensus 9 ~~~~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 87 (110)
+...|..+|..+.|+|- ...|++++.|-++++||+.... ....+.+|+++|..++|||+|+.+++
T Consensus 672 ~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~--------------~~~~l~gHtdqIf~~AWSpdGr~~At 737 (1012)
T KOG1445|consen 672 ILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK--------------LYSRLVGHTDQIFGIAWSPDGRRIAT 737 (1012)
T ss_pred eeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh--------------hhheeccCcCceeEEEECCCCcceee
Confidence 34478999999999995 5678999999999999999876 44678899999999999999999999
Q ss_pred ecCCCcEEEEeCCCCC
Q psy11100 88 SDETGLIIVWMLYKCN 103 (110)
Q Consensus 88 ~~~~~~i~~w~~~~~~ 103 (110)
.+.||.|++++.+++.
T Consensus 738 VcKDg~~rVy~Prs~e 753 (1012)
T KOG1445|consen 738 VCKDGTLRVYEPRSRE 753 (1012)
T ss_pred eecCceEEEeCCCCCC
Confidence 9999999999998754
No 56
>KOG0643|consensus
Probab=99.35 E-value=1e-11 Score=77.30 Aligned_cols=87 Identities=13% Similarity=0.184 Sum_probs=79.3
Q ss_pred ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100 9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS 88 (110)
Q Consensus 9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 88 (110)
+..+|.-+++.+.++.+|.+|.+++.|....+|-...+. .+.++.+|++.|.++..+-+...++++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGe--------------rlGty~GHtGavW~~Did~~s~~liTG 70 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGE--------------RLGTYDGHTGAVWCCDIDWDSKHLITG 70 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCc--------------eeeeecCCCceEEEEEecCCcceeeec
Confidence 345899999999999999999999999999999887776 789999999999999999999999999
Q ss_pred cCCCcEEEEeCCCCCChhhhh
Q psy11100 89 DETGLIIVWMLYKCNDDDEWK 109 (110)
Q Consensus 89 ~~~~~i~~w~~~~~~~~~~~~ 109 (110)
+.|.++++||+++|+.+-.++
T Consensus 71 SAD~t~kLWDv~tGk~la~~k 91 (327)
T KOG0643|consen 71 SADQTAKLWDVETGKQLATWK 91 (327)
T ss_pred cccceeEEEEcCCCcEEEEee
Confidence 999999999999998775543
No 57
>KOG0282|consensus
Probab=99.35 E-value=2.3e-12 Score=85.08 Aligned_cols=88 Identities=11% Similarity=0.120 Sum_probs=75.3
Q ss_pred eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCC-CeEE
Q psy11100 8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQY-EKLT 86 (110)
Q Consensus 8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~ 86 (110)
+.+.+|..+|.+++|+++|..+.+++.|+.+++||..++. ....+.. ...+.++.|+|++ ..|+
T Consensus 252 rtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~--------------~~~~f~~-~~~~~cvkf~pd~~n~fl 316 (503)
T KOG0282|consen 252 RTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQ--------------VLSRFHL-DKVPTCVKFHPDNQNIFL 316 (503)
T ss_pred hhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccce--------------EEEEEec-CCCceeeecCCCCCcEEE
Confidence 4566899999999999999999999999999999999997 4444432 3457899999998 5589
Q ss_pred EecCCCcEEEEeCCCCCChhhhhC
Q psy11100 87 SSDETGLIIVWMLYKCNDDDEWKR 110 (110)
Q Consensus 87 s~~~~~~i~~w~~~~~~~~~~~~~ 110 (110)
.|+.|+.|+.||++++..+.|+.+
T Consensus 317 ~G~sd~ki~~wDiRs~kvvqeYd~ 340 (503)
T KOG0282|consen 317 VGGSDKKIRQWDIRSGKVVQEYDR 340 (503)
T ss_pred EecCCCcEEEEeccchHHHHHHHh
Confidence 999999999999999999888753
No 58
>KOG0265|consensus
Probab=99.35 E-value=8.5e-12 Score=78.57 Aligned_cols=84 Identities=18% Similarity=0.196 Sum_probs=73.7
Q ss_pred cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEe
Q psy11100 10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSS 88 (110)
Q Consensus 10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~ 88 (110)
..+|.+.|..+.|.+|++.+++++.|..++.||..++. ..+.++.|...|+.+.-+..|.. +.++
T Consensus 86 lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~--------------~~rk~k~h~~~vNs~~p~rrg~~lv~Sg 151 (338)
T KOG0265|consen 86 LKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGK--------------RIRKHKGHTSFVNSLDPSRRGPQLVCSG 151 (338)
T ss_pred eccccceeEeeeeccCCCEEEEecCCceEEEEecccce--------------eeehhccccceeeecCccccCCeEEEec
Confidence 34899999999999999999999999999999999997 67888999999999986666766 7788
Q ss_pred cCCCcEEEEeCCCCCChhh
Q psy11100 89 DETGLIIVWMLYKCNDDDE 107 (110)
Q Consensus 89 ~~~~~i~~w~~~~~~~~~~ 107 (110)
+.|+++++||+++...+..
T Consensus 152 sdD~t~kl~D~R~k~~~~t 170 (338)
T KOG0265|consen 152 SDDGTLKLWDIRKKEAIKT 170 (338)
T ss_pred CCCceEEEEeecccchhhc
Confidence 8999999999997665543
No 59
>KOG1009|consensus
Probab=99.34 E-value=8.4e-12 Score=81.11 Aligned_cols=96 Identities=16% Similarity=0.263 Sum_probs=79.5
Q ss_pred CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCC--cCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100 11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKE--STGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS 88 (110)
Q Consensus 11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 88 (110)
..|+..|+++.|+|+|++|++|+.+|.+.+|-...-.. ........++.+.....+.+|...+..++|+|++..++++
T Consensus 62 s~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~ 141 (434)
T KOG1009|consen 62 SRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSG 141 (434)
T ss_pred cCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeee
Confidence 36889999999999999999999999999998763211 1111223456677788888999999999999999999999
Q ss_pred cCCCcEEEEeCCCCCChh
Q psy11100 89 DETGLIIVWMLYKCNDDD 106 (110)
Q Consensus 89 ~~~~~i~~w~~~~~~~~~ 106 (110)
+.|+++++||++.|+...
T Consensus 142 s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 142 SVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred eccceEEEEEeccceeEe
Confidence 999999999999988653
No 60
>KOG0647|consensus
Probab=99.34 E-value=9.3e-12 Score=78.51 Aligned_cols=81 Identities=21% Similarity=0.405 Sum_probs=66.6
Q ss_pred CCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100 12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE 90 (110)
Q Consensus 12 ~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 90 (110)
+-...|.+++|||. ...+++++-|+.||+|++.... .. .......|.+.|.+++|+.+|..+.+++.
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g----~~--------~~ka~~~~~~PvL~v~WsddgskVf~g~~ 92 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG----QL--------VPKAQQSHDGPVLDVCWSDDGSKVFSGGC 92 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCC----cc--------cchhhhccCCCeEEEEEccCCceEEeecc
Confidence 44578999999994 5567799999999999998742 00 11334568899999999999999999999
Q ss_pred CCcEEEEeCCCCCC
Q psy11100 91 TGLIIVWMLYKCND 104 (110)
Q Consensus 91 ~~~i~~w~~~~~~~ 104 (110)
|+.+++||+.+++.
T Consensus 93 Dk~~k~wDL~S~Q~ 106 (347)
T KOG0647|consen 93 DKQAKLWDLASGQV 106 (347)
T ss_pred CCceEEEEccCCCe
Confidence 99999999999865
No 61
>KOG0291|consensus
Probab=99.34 E-value=8.7e-12 Score=86.33 Aligned_cols=83 Identities=14% Similarity=0.203 Sum_probs=69.4
Q ss_pred eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100 8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS 87 (110)
Q Consensus 8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 87 (110)
.+..||.++|.+++|+|++..|++++.|.+|++||+.... ....++ .+...+..++|+|+|.-++.
T Consensus 472 DiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~-------------~~vEtl-~i~sdvl~vsfrPdG~elaV 537 (893)
T KOG0291|consen 472 DILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS-------------GTVETL-EIRSDVLAVSFRPDGKELAV 537 (893)
T ss_pred ehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC-------------ceeeeE-eeccceeEEEEcCCCCeEEE
Confidence 3556999999999999999999999999999999998764 012222 34567889999999999999
Q ss_pred ecCCCcEEEEeCCCCCC
Q psy11100 88 SDETGLIIVWMLYKCND 104 (110)
Q Consensus 88 ~~~~~~i~~w~~~~~~~ 104 (110)
++.||.|.+||...+..
T Consensus 538 aTldgqItf~d~~~~~q 554 (893)
T KOG0291|consen 538 ATLDGQITFFDIKEAVQ 554 (893)
T ss_pred EEecceEEEEEhhhcee
Confidence 99999999999876543
No 62
>KOG0302|consensus
Probab=99.34 E-value=1.6e-11 Score=79.46 Aligned_cols=86 Identities=27% Similarity=0.521 Sum_probs=71.9
Q ss_pred CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEec
Q psy11100 11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSSD 89 (110)
Q Consensus 11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~ 89 (110)
..|.+.|..+.|+.+..+|++|+.+|.++|||++.... . ++..+++.|...|+++.|+|...- |+.++
T Consensus 299 kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~---~--------~pVA~fk~Hk~pItsieW~p~e~s~iaasg 367 (440)
T KOG0302|consen 299 KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKS---G--------QPVATFKYHKAPITSIEWHPHEDSVIAASG 367 (440)
T ss_pred eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccC---C--------CcceeEEeccCCeeEEEeccccCceEEecc
Confidence 46889999999999878999999999999999987541 0 256789999999999999997554 88888
Q ss_pred CCCcEEEEeCCCCCChhh
Q psy11100 90 ETGLIIVWMLYKCNDDDE 107 (110)
Q Consensus 90 ~~~~i~~w~~~~~~~~~~ 107 (110)
.|.+|.+||+.-.+...|
T Consensus 368 ~D~QitiWDlsvE~D~ee 385 (440)
T KOG0302|consen 368 EDNQITIWDLSVEADEEE 385 (440)
T ss_pred CCCcEEEEEeeccCChhh
Confidence 999999999986665443
No 63
>KOG0772|consensus
Probab=99.33 E-value=4.6e-12 Score=84.66 Aligned_cols=81 Identities=19% Similarity=0.267 Sum_probs=65.2
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCC--CeEEEEEcCCCCeEEEec
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSG--KVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~ 89 (110)
+..-.++.++|+|+|.++|+|+.||+|.+|+...... .+ ....-..|.. .|.++.||++|+.|++.+
T Consensus 315 g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v---~p--------~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg 383 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTV---RP--------VMKVKDAHLPGQDITSISFSYDGNYLLSRG 383 (641)
T ss_pred CcccCceeeecCCCcchhhhcccCCceeeeecCCccc---cc--------ceEeeeccCCCCceeEEEeccccchhhhcc
Confidence 4456789999999999999999999999999865431 00 1223345655 799999999999999999
Q ss_pred CCCcEEEEeCCCCC
Q psy11100 90 ETGLIIVWMLYKCN 103 (110)
Q Consensus 90 ~~~~i~~w~~~~~~ 103 (110)
.|.++++||+++-+
T Consensus 384 ~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFK 397 (641)
T ss_pred CCCceeeeeccccc
Confidence 99999999998643
No 64
>KOG0316|consensus
Probab=99.32 E-value=1.3e-11 Score=75.77 Aligned_cols=81 Identities=20% Similarity=0.292 Sum_probs=74.9
Q ss_pred ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100 9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS 88 (110)
Q Consensus 9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 88 (110)
.+.+|..+|...+.+.|+..+++++.|..+.+||+.+++ ..+.+.+|.++|+.++|+.+...++++
T Consensus 54 tYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk--------------v~Rr~rgH~aqVNtV~fNeesSVv~Sg 119 (307)
T KOG0316|consen 54 TYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK--------------VDRRFRGHLAQVNTVRFNEESSVVASG 119 (307)
T ss_pred eecCCCceeeeccccccccccccCCCCceEEEEEcccCe--------------eeeecccccceeeEEEecCcceEEEec
Confidence 445788899999999999999999999999999999998 789999999999999999999999999
Q ss_pred cCCCcEEEEeCCCCC
Q psy11100 89 DETGLIIVWMLYKCN 103 (110)
Q Consensus 89 ~~~~~i~~w~~~~~~ 103 (110)
+-|.++++||-++.+
T Consensus 120 sfD~s~r~wDCRS~s 134 (307)
T KOG0316|consen 120 SFDSSVRLWDCRSRS 134 (307)
T ss_pred cccceeEEEEcccCC
Confidence 999999999988754
No 65
>KOG0303|consensus
Probab=99.32 E-value=3.4e-12 Score=82.94 Aligned_cols=90 Identities=17% Similarity=0.215 Sum_probs=74.1
Q ss_pred CCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEec
Q psy11100 12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSSD 89 (110)
Q Consensus 12 ~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~ 89 (110)
+|+++|..+.|+|. .+.+|+|+.|.++.+|.+.... .... ..++...+.+|...|..++|+|.... |++++
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~----l~~~---ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENG----LTRD---LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred CccccccccccCccCCceeecCCCCceEEEEECCCcc----cccC---cccceEEEeecceeEEEEeecccchhhHhhcc
Confidence 89999999999995 6679999999999999998653 1111 11245678899999999999997655 88999
Q ss_pred CCCcEEEEeCCCCCChhhh
Q psy11100 90 ETGLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 90 ~~~~i~~w~~~~~~~~~~~ 108 (110)
.|+.|.+||+.+|..+.++
T Consensus 152 ~Dn~v~iWnv~tgeali~l 170 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEALITL 170 (472)
T ss_pred CCceEEEEeccCCceeeec
Confidence 9999999999999877655
No 66
>KOG0305|consensus
Probab=99.31 E-value=1e-11 Score=83.51 Aligned_cols=84 Identities=18% Similarity=0.277 Sum_probs=72.5
Q ss_pred cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC-CCeEEEe
Q psy11100 10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ-YEKLTSS 88 (110)
Q Consensus 10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~ 88 (110)
..+|...|..++|++|+..+++|+.|+.+.|||..... +...+..|...|..++|+|- ..+||+|
T Consensus 297 ~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~--------------p~~~~~~H~aAVKA~awcP~q~~lLAsG 362 (484)
T KOG0305|consen 297 LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPE--------------PKFTFTEHTAAVKALAWCPWQSGLLATG 362 (484)
T ss_pred hhcccceeeeeEECCCCCeeccCCCccceEeccCCCcc--------------ccEEEeccceeeeEeeeCCCccCceEEc
Confidence 34699999999999999999999999999999996554 56788999999999999995 4558887
Q ss_pred c--CCCcEEEEeCCCCCChhh
Q psy11100 89 D--ETGLIIVWMLYKCNDDDE 107 (110)
Q Consensus 89 ~--~~~~i~~w~~~~~~~~~~ 107 (110)
+ .|+.|++||..+|..+..
T Consensus 363 GGs~D~~i~fwn~~~g~~i~~ 383 (484)
T KOG0305|consen 363 GGSADRCIKFWNTNTGARIDS 383 (484)
T ss_pred CCCcccEEEEEEcCCCcEecc
Confidence 6 588999999998887654
No 67
>KOG0640|consensus
Probab=99.31 E-value=5.8e-12 Score=80.01 Aligned_cols=90 Identities=11% Similarity=0.216 Sum_probs=77.6
Q ss_pred eeeeeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeec-cC-CCeEEEEEcCC
Q psy11100 4 YLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQG-HS-GKVRAIIWNEQ 81 (110)
Q Consensus 4 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~v~~~~~s~~ 81 (110)
|++.....+|++.|+++.+++.++.-++++.||.+++||--+.+ ++.++.. |. .+|.+..|..+
T Consensus 251 fvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~r--------------Cv~t~~~AH~gsevcSa~Ftkn 316 (430)
T KOG0640|consen 251 FVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNR--------------CVRTIGNAHGGSEVCSAVFTKN 316 (430)
T ss_pred eeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHH--------------HHHHHHhhcCCceeeeEEEccC
Confidence 45556666899999999999999999999999999999988776 5566643 54 57999999999
Q ss_pred CCeEEEecCCCcEEEEeCCCCCChhh
Q psy11100 82 YEKLTSSDETGLIIVWMLYKCNDDDE 107 (110)
Q Consensus 82 ~~~l~s~~~~~~i~~w~~~~~~~~~~ 107 (110)
|.++++.+.|..+++|++.+++-+.+
T Consensus 317 ~kyiLsSG~DS~vkLWEi~t~R~l~~ 342 (430)
T KOG0640|consen 317 GKYILSSGKDSTVKLWEISTGRMLKE 342 (430)
T ss_pred CeEEeecCCcceeeeeeecCCceEEE
Confidence 99999999999999999999987654
No 68
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.31 E-value=2.9e-11 Score=86.44 Aligned_cols=80 Identities=15% Similarity=0.363 Sum_probs=69.4
Q ss_pred CCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcC-CCCeEEEecC
Q psy11100 13 NNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNE-QYEKLTSSDE 90 (110)
Q Consensus 13 h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~ 90 (110)
+...+.+++|+|. +..+++++.|+.+++||+.... ....+.+|...|.+++|+| ++..|++++.
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~--------------~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~ 596 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ--------------LVTEMKEHEKRVWSIDYSSADPTLLASGSD 596 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe--------------EEEEecCCCCCEEEEEEcCCCCCEEEEEcC
Confidence 4567889999884 7889999999999999998765 5677889999999999997 6788999999
Q ss_pred CCcEEEEeCCCCCChh
Q psy11100 91 TGLIIVWMLYKCNDDD 106 (110)
Q Consensus 91 ~~~i~~w~~~~~~~~~ 106 (110)
|+.|++||++++..+.
T Consensus 597 Dg~v~iWd~~~~~~~~ 612 (793)
T PLN00181 597 DGSVKLWSINQGVSIG 612 (793)
T ss_pred CCEEEEEECCCCcEEE
Confidence 9999999998876543
No 69
>KOG0310|consensus
Probab=99.31 E-value=1.8e-11 Score=80.91 Aligned_cols=84 Identities=18% Similarity=0.257 Sum_probs=71.3
Q ss_pred CCCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC-eEEEe
Q psy11100 11 IPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE-KLTSS 88 (110)
Q Consensus 11 ~~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~ 88 (110)
.+|+.++..+.|+|+ +..+++|+.|..+++||+.+.. ....+.+|++.|.+.+|+|... .+++|
T Consensus 107 ~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~--------------v~~~l~~htDYVR~g~~~~~~~hivvtG 172 (487)
T KOG0310|consen 107 YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY--------------VQAELSGHTDYVRCGDISPANDHIVVTG 172 (487)
T ss_pred hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE--------------EEEEecCCcceeEeeccccCCCeEEEec
Confidence 379999999999996 4568888889999999999875 4457889999999999999755 59999
Q ss_pred cCCCcEEEEeCCCC-CChhhh
Q psy11100 89 DETGLIIVWMLYKC-NDDDEW 108 (110)
Q Consensus 89 ~~~~~i~~w~~~~~-~~~~~~ 108 (110)
+.||.|++||.+.. ..+.|+
T Consensus 173 sYDg~vrl~DtR~~~~~v~el 193 (487)
T KOG0310|consen 173 SYDGKVRLWDTRSLTSRVVEL 193 (487)
T ss_pred CCCceEEEEEeccCCceeEEe
Confidence 99999999999875 555554
No 70
>KOG4283|consensus
Probab=99.31 E-value=1.1e-11 Score=78.31 Aligned_cols=95 Identities=20% Similarity=0.410 Sum_probs=72.7
Q ss_pred eccCCCCCceEEEEEecCCCE-EEEEecCCcEEEEEcCCCCCcCCccc---ccc-cceeeeEEeeccCCCeEEEEEcCCC
Q psy11100 8 KIAIPNNTKVNCLAWHQNQGW-IAVGGDDGLLKVLKLDTGKESTGQVA---AAN-VNLAMNQSLQGHSGKVRAIIWNEQY 82 (110)
Q Consensus 8 ~~~~~h~~~v~~~~~~p~~~~-l~~~~~~~~v~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~v~~~~~s~~~ 82 (110)
.+..+|.+.|.++.|+|..++ |++|+.||.+++||+.... +... ... ...+.+.+-..|.+.|+.++|+.++
T Consensus 182 H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras---gcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~ 258 (397)
T KOG4283|consen 182 HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS---GCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA 258 (397)
T ss_pred eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccc---ceeEEeecccCccCccccccccccceeeeeeecccc
Confidence 455689999999999998775 7899999999999998653 1111 000 0001122334578899999999999
Q ss_pred CeEEEecCCCcEEEEeCCCCCCh
Q psy11100 83 EKLTSSDETGLIIVWMLYKCNDD 105 (110)
Q Consensus 83 ~~l~s~~~~~~i~~w~~~~~~~~ 105 (110)
..+++++.|..+++|+..+|+..
T Consensus 259 ~~l~~~gtd~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 259 RYLASCGTDDRIRVWNMESGRNT 281 (397)
T ss_pred hhhhhccCccceEEeecccCccc
Confidence 99999999999999999988763
No 71
>KOG0295|consensus
Probab=99.31 E-value=2.6e-11 Score=78.05 Aligned_cols=88 Identities=22% Similarity=0.256 Sum_probs=81.9
Q ss_pred eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100 8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS 87 (110)
Q Consensus 8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 87 (110)
+...+|.-.|.+++|-|.|..+++++.|.++++|+...+- +..++.+|...|.-++.+.||.++++
T Consensus 187 ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~--------------cv~t~~~h~ewvr~v~v~~DGti~As 252 (406)
T KOG0295|consen 187 KSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY--------------CVKTFPGHSEWVRMVRVNQDGTIIAS 252 (406)
T ss_pred HHhcCcccceeeEEEEecCCeeeecccccceeEEecccce--------------eEEeccCchHhEEEEEecCCeeEEEe
Confidence 4556899999999999999999999999999999999987 78999999999999999999999999
Q ss_pred ecCCCcEEEEeCCCCCChhhhh
Q psy11100 88 SDETGLIIVWMLYKCNDDDEWK 109 (110)
Q Consensus 88 ~~~~~~i~~w~~~~~~~~~~~~ 109 (110)
++.|.+|++|-+.+++...++|
T Consensus 253 ~s~dqtl~vW~~~t~~~k~~lR 274 (406)
T KOG0295|consen 253 CSNDQTLRVWVVATKQCKAELR 274 (406)
T ss_pred cCCCceEEEEEeccchhhhhhh
Confidence 9999999999999998887776
No 72
>KOG0647|consensus
Probab=99.31 E-value=3.2e-11 Score=76.14 Aligned_cols=80 Identities=18% Similarity=0.295 Sum_probs=70.3
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC--eEEEec
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE--KLTSSD 89 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~ 89 (110)
.|.++|.+++|+.||.++++|+.|+.+++||+.++. ..+...|...|..+.|-+... .|++++
T Consensus 70 ~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q---------------~~~v~~Hd~pvkt~~wv~~~~~~cl~TGS 134 (347)
T KOG0647|consen 70 SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ---------------VSQVAAHDAPVKTCHWVPGMNYQCLVTGS 134 (347)
T ss_pred ccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC---------------eeeeeecccceeEEEEecCCCcceeEecc
Confidence 588999999999999999999999999999999875 466788999999999976544 689999
Q ss_pred CCCcEEEEeCCCCCChh
Q psy11100 90 ETGLIIVWMLYKCNDDD 106 (110)
Q Consensus 90 ~~~~i~~w~~~~~~~~~ 106 (110)
=|.+|++||.+...-+.
T Consensus 135 WDKTlKfWD~R~~~pv~ 151 (347)
T KOG0647|consen 135 WDKTLKFWDTRSSNPVA 151 (347)
T ss_pred cccceeecccCCCCeee
Confidence 99999999999765443
No 73
>KOG0269|consensus
Probab=99.31 E-value=6.8e-12 Score=86.84 Aligned_cols=82 Identities=17% Similarity=0.334 Sum_probs=71.4
Q ss_pred CCCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100 11 IPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 11 ~~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 89 (110)
.+....|.+++|+|. +..++++...|.|.+||++... ++...+..|.+.|.++.|+|+..+||+|+
T Consensus 173 ~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~-------------r~~~k~~AH~GpV~c~nwhPnr~~lATGG 239 (839)
T KOG0269|consen 173 RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD-------------RCEKKLTAHNGPVLCLNWHPNREWLATGG 239 (839)
T ss_pred cccchhhhceeeccCCCceEEEecCCceEEEeeccCch-------------hHHHHhhcccCceEEEeecCCCceeeecC
Confidence 356678999999995 7789999999999999999765 25567888999999999999999999999
Q ss_pred CCCcEEEEeCCCCCCh
Q psy11100 90 ETGLIIVWMLYKCNDD 105 (110)
Q Consensus 90 ~~~~i~~w~~~~~~~~ 105 (110)
.|+.+++||+.+++..
T Consensus 240 RDK~vkiWd~t~~~~~ 255 (839)
T KOG0269|consen 240 RDKMVKIWDMTDSRAK 255 (839)
T ss_pred CCccEEEEeccCCCcc
Confidence 9999999999876543
No 74
>KOG0973|consensus
Probab=99.30 E-value=1.7e-11 Score=86.96 Aligned_cols=82 Identities=16% Similarity=0.283 Sum_probs=75.6
Q ss_pred eeeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeE
Q psy11100 6 SKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKL 85 (110)
Q Consensus 6 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 85 (110)
+..+..+|.+.|.++.|+|++.++++++.|++|.+|+..+.. .+..+.+|.+.|..+.|.|.|++|
T Consensus 121 ~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~--------------~~~vl~~H~s~VKGvs~DP~Gky~ 186 (942)
T KOG0973|consen 121 VVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFE--------------LLKVLRGHQSLVKGVSWDPIGKYF 186 (942)
T ss_pred EEEEEecCCCccceeccCCCccEEEEecccceEEEEccccce--------------eeeeeecccccccceEECCccCee
Confidence 456677899999999999999999999999999999999876 788999999999999999999999
Q ss_pred EEecCCCcEEEEeCCC
Q psy11100 86 TSSDETGLIIVWMLYK 101 (110)
Q Consensus 86 ~s~~~~~~i~~w~~~~ 101 (110)
++-++|.+|++|+..+
T Consensus 187 ASqsdDrtikvwrt~d 202 (942)
T KOG0973|consen 187 ASQSDDRTLKVWRTSD 202 (942)
T ss_pred eeecCCceEEEEEccc
Confidence 9999999999999543
No 75
>KOG0639|consensus
Probab=99.29 E-value=5.5e-12 Score=84.28 Aligned_cols=77 Identities=18% Similarity=0.195 Sum_probs=70.3
Q ss_pred eEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEE
Q psy11100 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIV 96 (110)
Q Consensus 17 v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~ 96 (110)
..+++.+||.+...+++.||.|.|||+.... ..+++++|.+.+.|+..+++|..|-+++.|++|+.
T Consensus 512 CyALa~spDakvcFsccsdGnI~vwDLhnq~--------------~VrqfqGhtDGascIdis~dGtklWTGGlDntvRc 577 (705)
T KOG0639|consen 512 CYALAISPDAKVCFSCCSDGNIAVWDLHNQT--------------LVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRC 577 (705)
T ss_pred hhhhhcCCccceeeeeccCCcEEEEEcccce--------------eeecccCCCCCceeEEecCCCceeecCCCccceee
Confidence 4558889999999999999999999999876 78899999999999999999999999999999999
Q ss_pred EeCCCCCChhh
Q psy11100 97 WMLYKCNDDDE 107 (110)
Q Consensus 97 w~~~~~~~~~~ 107 (110)
||++.++.+.+
T Consensus 578 WDlregrqlqq 588 (705)
T KOG0639|consen 578 WDLREGRQLQQ 588 (705)
T ss_pred hhhhhhhhhhh
Confidence 99999876543
No 76
>KOG0292|consensus
Probab=99.29 E-value=1.6e-11 Score=86.48 Aligned_cols=94 Identities=22% Similarity=0.373 Sum_probs=83.4
Q ss_pred eeeeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe
Q psy11100 5 LSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK 84 (110)
Q Consensus 5 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 84 (110)
+.|.+..||.-+|.-++|+|.-.++++|+.|..|++|....-+ - ...-++.+|.+.|+++-|+|...+
T Consensus 197 VVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK-----------a-WEvDtcrgH~nnVssvlfhp~q~l 264 (1202)
T KOG0292|consen 197 VVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK-----------A-WEVDTCRGHYNNVSSVLFHPHQDL 264 (1202)
T ss_pred eeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc-----------c-eeehhhhcccCCcceEEecCccce
Confidence 5678888999999999999999999999999999999988654 1 135678899999999999999999
Q ss_pred EEEecCCCcEEEEeCCCCCChhhhhC
Q psy11100 85 LTSSDETGLIIVWMLYKCNDDDEWKR 110 (110)
Q Consensus 85 l~s~~~~~~i~~w~~~~~~~~~~~~~ 110 (110)
++|.+.|++|++||+.+...+.++||
T Consensus 265 IlSnsEDksirVwDm~kRt~v~tfrr 290 (1202)
T KOG0292|consen 265 ILSNSEDKSIRVWDMTKRTSVQTFRR 290 (1202)
T ss_pred eEecCCCccEEEEecccccceeeeec
Confidence 99999999999999999888877764
No 77
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.28 E-value=1.1e-10 Score=72.29 Aligned_cols=83 Identities=30% Similarity=0.462 Sum_probs=71.1
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 91 (110)
.|.+.+.++.|+|++.++++++.++.+++||+.... ....+..|...+.++.|+|++..++.++.+
T Consensus 133 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 198 (289)
T cd00200 133 GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK--------------CVATLTGHTGEVNSVAFSPDGEKLLSSSSD 198 (289)
T ss_pred cCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc--------------cceeEecCccccceEEECCCcCEEEEecCC
Confidence 578889999999999999888889999999998665 455666788899999999999888888889
Q ss_pred CcEEEEeCCCCCChhhh
Q psy11100 92 GLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 92 ~~i~~w~~~~~~~~~~~ 108 (110)
+.+.+||+++++...++
T Consensus 199 ~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 199 GTIKLWDLSTGKCLGTL 215 (289)
T ss_pred CcEEEEECCCCceecch
Confidence 99999999887665544
No 78
>KOG0294|consensus
Probab=99.28 E-value=4.2e-11 Score=76.00 Aligned_cols=79 Identities=16% Similarity=0.290 Sum_probs=71.8
Q ss_pred CCCCceEEEEEecCCC--EEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100 12 PNNTKVNCLAWHQNQG--WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~--~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 89 (110)
.|.+.++++.|.++-. .|++|+.||.+.+|+..... ....++.|.++|+.++.+|.+.+-++.+
T Consensus 81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~--------------~~~slK~H~~~Vt~lsiHPS~KLALsVg 146 (362)
T KOG0294|consen 81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE--------------LLKSLKAHKGQVTDLSIHPSGKLALSVG 146 (362)
T ss_pred ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE--------------EeeeecccccccceeEecCCCceEEEEc
Confidence 6899999999998754 79999999999999999775 7889999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCC
Q psy11100 90 ETGLIIVWMLYKCND 104 (110)
Q Consensus 90 ~~~~i~~w~~~~~~~ 104 (110)
.|+.+++||+=.|+.
T Consensus 147 ~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 147 GDQVLRTWNLVRGRV 161 (362)
T ss_pred CCceeeeehhhcCcc
Confidence 999999999876654
No 79
>KOG0303|consensus
Probab=99.27 E-value=1.6e-11 Score=79.83 Aligned_cols=83 Identities=17% Similarity=0.244 Sum_probs=73.6
Q ss_pred cCCCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100 10 AIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS 88 (110)
Q Consensus 10 ~~~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 88 (110)
..+|+-.|..++|+|- .+.|++++.|+.|.+|++.++. .+.++. |.+.|.++.||.+|..+++.
T Consensus 127 L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tge--------------ali~l~-hpd~i~S~sfn~dGs~l~Tt 191 (472)
T KOG0303|consen 127 LYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGE--------------ALITLD-HPDMVYSMSFNRDGSLLCTT 191 (472)
T ss_pred EeecceeEEEEeecccchhhHhhccCCceEEEEeccCCc--------------eeeecC-CCCeEEEEEeccCCceeeee
Confidence 3489999999999996 5678899999999999999987 444555 89999999999999999999
Q ss_pred cCCCcEEEEeCCCCCChhh
Q psy11100 89 DETGLIIVWMLYKCNDDDE 107 (110)
Q Consensus 89 ~~~~~i~~w~~~~~~~~~~ 107 (110)
+.|..|++||.+++..+.|
T Consensus 192 ckDKkvRv~dpr~~~~v~e 210 (472)
T KOG0303|consen 192 CKDKKVRVIDPRRGTVVSE 210 (472)
T ss_pred cccceeEEEcCCCCcEeee
Confidence 9999999999999987765
No 80
>KOG0296|consensus
Probab=99.26 E-value=3.9e-11 Score=77.23 Aligned_cols=81 Identities=16% Similarity=0.324 Sum_probs=71.8
Q ss_pred CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100 15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLI 94 (110)
Q Consensus 15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i 94 (110)
+.+.=+.|+|.+..++.|+.||.+.+|.+.+.. ....+.+|...+.+=.|.|+|+.++++..||+|
T Consensus 149 ~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~--------------~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti 214 (399)
T KOG0296|consen 149 EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA--------------LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTI 214 (399)
T ss_pred CceEEEEecccccEEEeecCCCcEEEEECCCcc--------------eeeEecCCCCCcccccccCCCceEEEEecCceE
Confidence 345557899999999999999999999999865 567788999999999999999999999999999
Q ss_pred EEEeCCCCCChhhhh
Q psy11100 95 IVWMLYKCNDDDEWK 109 (110)
Q Consensus 95 ~~w~~~~~~~~~~~~ 109 (110)
++||+.+|+-+..+.
T Consensus 215 ~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 215 IVWNPKTGQPLHKIT 229 (399)
T ss_pred EEEecCCCceeEEec
Confidence 999999998776654
No 81
>KOG1446|consensus
Probab=99.25 E-value=1.7e-10 Score=72.93 Aligned_cols=93 Identities=16% Similarity=0.245 Sum_probs=72.1
Q ss_pred CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCc----CCccc----------------cc--ccc--------eee
Q psy11100 13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKES----TGQVA----------------AA--NVN--------LAM 62 (110)
Q Consensus 13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~----~~~~~----------------~~--~~~--------~~~ 62 (110)
..+.+.++.|+++|..+++++.|-.+++||...+... .+... +. ... -..
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 5678999999999999999999999999998766421 00000 00 000 012
Q ss_pred eEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCCh
Q psy11100 63 NQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDD 105 (110)
Q Consensus 63 ~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~ 105 (110)
++.+.+|...|.++..+|.+..++|++.|.+|++||++..+..
T Consensus 93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cq 135 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQ 135 (311)
T ss_pred EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCc
Confidence 7788999999999999999999999999999999999965553
No 82
>KOG0267|consensus
Probab=99.25 E-value=1.4e-11 Score=84.89 Aligned_cols=87 Identities=16% Similarity=0.253 Sum_probs=78.9
Q ss_pred ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100 9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS 88 (110)
Q Consensus 9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 88 (110)
...+|...+..+.|+|-+.+.+.|+.|+.+++||+.... +...+.+|...|..++|+|+|.+++++
T Consensus 107 tLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G--------------c~~~~~s~~~vv~~l~lsP~Gr~v~~g 172 (825)
T KOG0267|consen 107 TLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG--------------CSHTYKSHTRVVDVLRLSPDGRWVASG 172 (825)
T ss_pred hhhccccCcceeeeccceEEeccccccccceehhhhccC--------------ceeeecCCcceeEEEeecCCCceeecc
Confidence 345899999999999999999999999999999999665 678888899999999999999999999
Q ss_pred cCCCcEEEEeCCCCCChhhhh
Q psy11100 89 DETGLIIVWMLYKCNDDDEWK 109 (110)
Q Consensus 89 ~~~~~i~~w~~~~~~~~~~~~ 109 (110)
+.|.++++||...|+...|++
T Consensus 173 ~ed~tvki~d~~agk~~~ef~ 193 (825)
T KOG0267|consen 173 GEDNTVKIWDLTAGKLSKEFK 193 (825)
T ss_pred CCcceeeeecccccccccccc
Confidence 999999999999998887664
No 83
>KOG1274|consensus
Probab=99.25 E-value=9.2e-11 Score=82.52 Aligned_cols=94 Identities=21% Similarity=0.369 Sum_probs=69.7
Q ss_pred eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcC-----------------Cccc--c-------------
Q psy11100 8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKEST-----------------GQVA--A------------- 55 (110)
Q Consensus 8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~-----------------~~~~--~------------- 55 (110)
+...+|.++|.++.|+|++++||+.+.||.|++|++..+.-.. ..+. +
T Consensus 132 ~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~ 211 (933)
T KOG1274|consen 132 KVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT 211 (933)
T ss_pred eeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe
Confidence 4556899999999999999999999999999999987542110 0000 0
Q ss_pred ----cccceeeeEEeec--cCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCC
Q psy11100 56 ----ANVNLAMNQSLQG--HSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK 101 (110)
Q Consensus 56 ----~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~ 101 (110)
.+.+|...+.+.. +...+..++|+|.|++||+++.+|.|.+||+.+
T Consensus 212 Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 212 VKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 0112222333332 234488999999999999999999999999986
No 84
>KOG0276|consensus
Probab=99.24 E-value=2e-11 Score=83.30 Aligned_cols=80 Identities=23% Similarity=0.405 Sum_probs=72.1
Q ss_pred CCCCCceEEEEEecCC--CEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100 11 IPNNTKVNCLAWHQNQ--GWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS 88 (110)
Q Consensus 11 ~~h~~~v~~~~~~p~~--~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 88 (110)
.+|..+|.|+.+-+.| .+|++|+.|..+++||..+.. +.+++.+|.+.|+.+.|+|.-..+++|
T Consensus 180 ~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~--------------CV~TLeGHt~Nvs~v~fhp~lpiiisg 245 (794)
T KOG0276|consen 180 EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKS--------------CVQTLEGHTNNVSFVFFHPELPIIISG 245 (794)
T ss_pred eccccCcceEEeccCCCcceEEecCCCceEEEeecchHH--------------HHHHhhcccccceEEEecCCCcEEEEe
Confidence 3899999999997754 689999999999999999876 789999999999999999999999999
Q ss_pred cCCCcEEEEeCCCCCC
Q psy11100 89 DETGLIIVWMLYKCND 104 (110)
Q Consensus 89 ~~~~~i~~w~~~~~~~ 104 (110)
+.||++++|+-.+=+.
T Consensus 246 sEDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 246 SEDGTVRIWNSKTYKL 261 (794)
T ss_pred cCCccEEEecCcceeh
Confidence 9999999998765443
No 85
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.23 E-value=2.9e-10 Score=81.44 Aligned_cols=78 Identities=14% Similarity=0.256 Sum_probs=65.9
Q ss_pred CCCCCceEEEEEec-CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEc-CCCCeEEEe
Q psy11100 11 IPNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWN-EQYEKLTSS 88 (110)
Q Consensus 11 ~~h~~~v~~~~~~p-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~ 88 (110)
.+|.+.|.+++|+| ++..+++|+.|+.+++||+.... ....+..+ ..+.++.|+ +++..++++
T Consensus 572 ~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~--------------~~~~~~~~-~~v~~v~~~~~~g~~latg 636 (793)
T PLN00181 572 KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV--------------SIGTIKTK-ANICCVQFPSESGRSLAFG 636 (793)
T ss_pred cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc--------------EEEEEecC-CCeEEEEEeCCCCCEEEEE
Confidence 37999999999997 78899999999999999998765 44555543 578899995 568899999
Q ss_pred cCCCcEEEEeCCCCC
Q psy11100 89 DETGLIIVWMLYKCN 103 (110)
Q Consensus 89 ~~~~~i~~w~~~~~~ 103 (110)
+.|+.|++||+++++
T Consensus 637 s~dg~I~iwD~~~~~ 651 (793)
T PLN00181 637 SADHKVYYYDLRNPK 651 (793)
T ss_pred eCCCeEEEEECCCCC
Confidence 999999999998764
No 86
>KOG0278|consensus
Probab=99.23 E-value=8.9e-11 Score=72.79 Aligned_cols=76 Identities=24% Similarity=0.376 Sum_probs=65.2
Q ss_pred ceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEe-eccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100 16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL-QGHSGKVRAIIWNEQYEKLTSSDETGLI 94 (110)
Q Consensus 16 ~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~~~~i 94 (110)
.|.+-.++|+...+++|+.|..++.||..++. .+..+ ++|-++|.++.|+|+|+..++++.||+|
T Consensus 226 nV~SASL~P~k~~fVaGged~~~~kfDy~Tge--------------Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTi 291 (334)
T KOG0278|consen 226 NVESASLHPKKEFFVAGGEDFKVYKFDYNTGE--------------EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTI 291 (334)
T ss_pred ccccccccCCCceEEecCcceEEEEEeccCCc--------------eeeecccCCCCceEEEEECCCCceeeccCCCceE
Confidence 46667789998899999999999999999886 34444 7889999999999999999999999999
Q ss_pred EEEeCCCCCCh
Q psy11100 95 IVWMLYKCNDD 105 (110)
Q Consensus 95 ~~w~~~~~~~~ 105 (110)
++|...-++-.
T Consensus 292 rlWQt~~~~~~ 302 (334)
T KOG0278|consen 292 RLWQTTPGKTY 302 (334)
T ss_pred EEEEecCCCch
Confidence 99987765543
No 87
>KOG0772|consensus
Probab=99.23 E-value=3.9e-11 Score=80.36 Aligned_cols=82 Identities=20% Similarity=0.341 Sum_probs=63.1
Q ss_pred ccCCCCCceEEEEEecCC-CEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEee--ccCCCeEEEEEcCCCCeE
Q psy11100 9 IAIPNNTKVNCLAWHQNQ-GWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQ--GHSGKVRAIIWNEQYEKL 85 (110)
Q Consensus 9 ~~~~h~~~v~~~~~~p~~-~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l 85 (110)
...||.+.++|-.|+|+. +.+++++.||++++|++..... + .+.+.... +..-.+..++|+|+|.+|
T Consensus 263 nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~---q-------~qVik~k~~~g~Rv~~tsC~~nrdg~~i 332 (641)
T KOG0772|consen 263 NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS---Q-------LQVIKTKPAGGKRVPVTSCAWNRDGKLI 332 (641)
T ss_pred ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh---h-------eeEEeeccCCCcccCceeeecCCCcchh
Confidence 455899999999999974 4578889999999999987651 1 11222211 122356899999999999
Q ss_pred EEecCCCcEEEEeCC
Q psy11100 86 TSSDETGLIIVWMLY 100 (110)
Q Consensus 86 ~s~~~~~~i~~w~~~ 100 (110)
+.++.||+|++|+..
T Consensus 333 Aagc~DGSIQ~W~~~ 347 (641)
T KOG0772|consen 333 AAGCLDGSIQIWDKG 347 (641)
T ss_pred hhcccCCceeeeecC
Confidence 999999999999974
No 88
>KOG1539|consensus
Probab=99.23 E-value=5.6e-11 Score=83.01 Aligned_cols=95 Identities=18% Similarity=0.240 Sum_probs=74.4
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCccc--------------------ccc--------cceeee
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVA--------------------AAN--------VNLAMN 63 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~--------------------~~~--------~~~~~~ 63 (110)
.|.++|+.++...-++.+++++.+|-+++||.....-. +..+ -.. ......
T Consensus 491 ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~-~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv 569 (910)
T KOG1539|consen 491 AHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK-KSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV 569 (910)
T ss_pred cccCceeEEEecCCCceEEEccCcceEEEEecCCccee-eeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh
Confidence 68899999999888899999999999999998765300 0000 000 011125
Q ss_pred EEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCChhh
Q psy11100 64 QSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDE 107 (110)
Q Consensus 64 ~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~~ 107 (110)
+.+.+|++.+++++|||+|+++++++.|++|++||+.++..++-
T Consensus 570 R~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~ 613 (910)
T KOG1539|consen 570 REFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDG 613 (910)
T ss_pred HHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeee
Confidence 56788999999999999999999999999999999999887653
No 89
>KOG0313|consensus
Probab=99.22 E-value=5.6e-11 Score=76.91 Aligned_cols=79 Identities=25% Similarity=0.484 Sum_probs=68.7
Q ss_pred CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEecCCC
Q psy11100 14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSSDETG 92 (110)
Q Consensus 14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~~~ 92 (110)
...+.|+.++|...+|++|+.|..+++||.+.+. +. ...+++-+|.+.|..+.|+|...+ |++++.|+
T Consensus 300 ~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~---gs--------~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~ 368 (423)
T KOG0313|consen 300 NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGD---GS--------VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN 368 (423)
T ss_pred CcceeEeecccccceeeecCCCCceeecCCCCCC---Cc--------eeEEeeecchhhhhheecCCCCceEEEEEecCC
Confidence 3568889999999999999999999999998765 11 256788899999999999998877 99999999
Q ss_pred cEEEEeCCCCC
Q psy11100 93 LIIVWMLYKCN 103 (110)
Q Consensus 93 ~i~~w~~~~~~ 103 (110)
++++||+++.+
T Consensus 369 t~klWDvRS~k 379 (423)
T KOG0313|consen 369 TVKLWDVRSTK 379 (423)
T ss_pred eEEEEEeccCC
Confidence 99999999765
No 90
>KOG0293|consensus
Probab=99.21 E-value=9.2e-11 Score=76.85 Aligned_cols=81 Identities=21% Similarity=0.403 Sum_probs=68.1
Q ss_pred eeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEe-eccCCCeEEEEEcCCCCeE
Q psy11100 7 KKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL-QGHSGKVRAIIWNEQYEKL 85 (110)
Q Consensus 7 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l 85 (110)
++...+|..+|.-+.|+||.+++++++.+..+.+||+.++. ..... .++...+.+.+|.|||..+
T Consensus 262 ~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd--------------~~~~y~~~~~~S~~sc~W~pDg~~~ 327 (519)
T KOG0293|consen 262 KKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGD--------------LRHLYPSGLGFSVSSCAWCPDGFRF 327 (519)
T ss_pred eeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcch--------------hhhhcccCcCCCcceeEEccCCcee
Confidence 34556899999999999999999999989999999999886 22222 2245678999999999999
Q ss_pred EEecCCCcEEEEeCCC
Q psy11100 86 TSSDETGLIIVWMLYK 101 (110)
Q Consensus 86 ~s~~~~~~i~~w~~~~ 101 (110)
++|+.|.++..||+..
T Consensus 328 V~Gs~dr~i~~wdlDg 343 (519)
T KOG0293|consen 328 VTGSPDRTIIMWDLDG 343 (519)
T ss_pred EecCCCCcEEEecCCc
Confidence 9999999999999864
No 91
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.20 E-value=3.1e-10 Score=68.96 Aligned_cols=76 Identities=12% Similarity=0.260 Sum_probs=57.6
Q ss_pred CCCceEEEEEecCCCEEEEEecC---CcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100 13 NNTKVNCLAWHQNQGWIAVGGDD---GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 13 h~~~v~~~~~~p~~~~l~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 89 (110)
+...+..+.|+|+|++++.++.+ |.+.+||..... .+... +...+..++|+|+|++++++.
T Consensus 99 ~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~--------------~i~~~--~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 99 GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK--------------KISTF--EHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE--------------Eeecc--ccCcEEEEEEcCCCCEEEEEE
Confidence 45678899999999999887644 569999999765 33332 234478999999999988876
Q ss_pred ------CCCcEEEEeCCCCCCh
Q psy11100 90 ------ETGLIIVWMLYKCNDD 105 (110)
Q Consensus 90 ------~~~~i~~w~~~~~~~~ 105 (110)
.|+.+++|++. |+.+
T Consensus 163 t~~r~~~dng~~Iw~~~-G~~l 183 (194)
T PF08662_consen 163 TSPRLRVDNGFKIWSFQ-GRLL 183 (194)
T ss_pred eccceeccccEEEEEec-CeEe
Confidence 36789999985 4433
No 92
>KOG0277|consensus
Probab=99.19 E-value=1.5e-10 Score=71.80 Aligned_cols=76 Identities=14% Similarity=0.305 Sum_probs=67.4
Q ss_pred CCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC-CCeEEEec
Q psy11100 12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ-YEKLTSSD 89 (110)
Q Consensus 12 ~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~ 89 (110)
.|..+|.++.|++- ++.+++++-|++|++|+-.... .++++.+|...|...+|||. ...+++++
T Consensus 102 EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~--------------Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~S 167 (311)
T KOG0277|consen 102 EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN--------------SVQTFNGHNSCIYQAAFSPHIPNLFASAS 167 (311)
T ss_pred hhhhheEEeccccccceeEEeeccCCceEeecCCCCc--------------ceEeecCCccEEEEEecCCCCCCeEEEcc
Confidence 68999999999994 5667788999999999998776 67899999999999999996 55699999
Q ss_pred CCCcEEEEeCCC
Q psy11100 90 ETGLIIVWMLYK 101 (110)
Q Consensus 90 ~~~~i~~w~~~~ 101 (110)
.|+++++||++.
T Consensus 168 gd~~l~lwdvr~ 179 (311)
T KOG0277|consen 168 GDGTLRLWDVRS 179 (311)
T ss_pred CCceEEEEEecC
Confidence 999999999874
No 93
>KOG0277|consensus
Probab=99.19 E-value=3.2e-10 Score=70.40 Aligned_cols=81 Identities=15% Similarity=0.246 Sum_probs=68.2
Q ss_pred ccCCCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC-CCeEE
Q psy11100 9 IAIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ-YEKLT 86 (110)
Q Consensus 9 ~~~~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~ 86 (110)
...+|..-|...+|+|. +.++++++.|+.+++||++... ....+..|..++.++.|+.- ...++
T Consensus 142 Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g--------------k~~~i~ah~~Eil~cdw~ky~~~vl~ 207 (311)
T KOG0277|consen 142 TFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG--------------KFMSIEAHNSEILCCDWSKYNHNVLA 207 (311)
T ss_pred eecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC--------------ceeEEEeccceeEeecccccCCcEEE
Confidence 34479999999999995 7889999999999999998764 23448889899999999974 55699
Q ss_pred EecCCCcEEEEeCCCCC
Q psy11100 87 SSDETGLIIVWMLYKCN 103 (110)
Q Consensus 87 s~~~~~~i~~w~~~~~~ 103 (110)
+++.|+.|++||+++-+
T Consensus 208 Tg~vd~~vr~wDir~~r 224 (311)
T KOG0277|consen 208 TGGVDNLVRGWDIRNLR 224 (311)
T ss_pred ecCCCceEEEEehhhcc
Confidence 99999999999998643
No 94
>KOG1446|consensus
Probab=99.19 E-value=6.4e-10 Score=70.39 Aligned_cols=82 Identities=13% Similarity=0.208 Sum_probs=68.1
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCC---eEEEEEcCCCCeEEEe
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGK---VRAIIWNEQYEKLTSS 88 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~s~ 88 (110)
+...+.+.+.|+|||+.++.+...+.+.+.|...+. ...++..+... -....|+|+++++.++
T Consensus 185 ~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~--------------~~~tfs~~~~~~~~~~~a~ftPds~Fvl~g 250 (311)
T KOG1446|consen 185 NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGT--------------VKSTFSGYPNAGNLPLSATFTPDSKFVLSG 250 (311)
T ss_pred CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCc--------------EeeeEeeccCCCCcceeEEECCCCcEEEEe
Confidence 456788999999999999999999999999999887 45555554322 3678899999999999
Q ss_pred cCCCcEEEEeCCCCCChhh
Q psy11100 89 DETGLIIVWMLYKCNDDDE 107 (110)
Q Consensus 89 ~~~~~i~~w~~~~~~~~~~ 107 (110)
+.||+|.+|++++|..+..
T Consensus 251 s~dg~i~vw~~~tg~~v~~ 269 (311)
T KOG1446|consen 251 SDDGTIHVWNLETGKKVAV 269 (311)
T ss_pred cCCCcEEEEEcCCCcEeeE
Confidence 9999999999998876543
No 95
>KOG0646|consensus
Probab=99.18 E-value=4.4e-10 Score=74.24 Aligned_cols=46 Identities=24% Similarity=0.370 Sum_probs=38.5
Q ss_pred EEeeccCC--CeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCChhhhh
Q psy11100 64 QSLQGHSG--KVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEWK 109 (110)
Q Consensus 64 ~~~~~~~~--~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~~~~ 109 (110)
..+.+|.+ .|+|++.|-||..|++|+.||.+.+||+.+.+.++.+-
T Consensus 269 ~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 269 NVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred eeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 34556666 89999999999999999999999999999888887653
No 96
>KOG0283|consensus
Probab=99.18 E-value=1e-10 Score=81.20 Aligned_cols=79 Identities=13% Similarity=0.180 Sum_probs=67.3
Q ss_pred CCCCceEEEEEec-CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100 12 PNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE 90 (110)
Q Consensus 12 ~h~~~v~~~~~~p-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 90 (110)
.|...|+|++|+| |.+++++|+.|+.++||++.... ......-...|+.+++.|+|+..+.|+.
T Consensus 407 ~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~---------------Vv~W~Dl~~lITAvcy~PdGk~avIGt~ 471 (712)
T KOG0283|consen 407 SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK---------------VVDWNDLRDLITAVCYSPDGKGAVIGTF 471 (712)
T ss_pred ecCCeeEEEEecccCCCcEeecccccceEEeecCcCe---------------eEeehhhhhhheeEEeccCCceEEEEEe
Confidence 6999999999999 68899999999999999999765 2223333478999999999999999999
Q ss_pred CCcEEEEeCCCCCCh
Q psy11100 91 TGLIIVWMLYKCNDD 105 (110)
Q Consensus 91 ~~~i~~w~~~~~~~~ 105 (110)
+|..++|+.+..+..
T Consensus 472 ~G~C~fY~t~~lk~~ 486 (712)
T KOG0283|consen 472 NGYCRFYDTEGLKLV 486 (712)
T ss_pred ccEEEEEEccCCeEE
Confidence 999999998766543
No 97
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.17 E-value=5.8e-10 Score=67.79 Aligned_cols=80 Identities=16% Similarity=0.215 Sum_probs=60.1
Q ss_pred CCCCceEEEEEecCCCEEE--EEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100 12 PNNTKVNCLAWHQNQGWIA--VGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 89 (110)
...++|.+++|+|+|+.++ .|..+..+.+||+.. . .+..+ ....++.+.|||+|++++.++
T Consensus 57 ~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~-~--------------~i~~~--~~~~~n~i~wsP~G~~l~~~g 119 (194)
T PF08662_consen 57 KKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG-K--------------KIFSF--GTQPRNTISWSPDGRFLVLAG 119 (194)
T ss_pred cCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc-c--------------EeEee--cCCCceEEEECCCCCEEEEEE
Confidence 4556799999999998754 345667899999973 2 33444 356778999999999988876
Q ss_pred C---CCcEEEEeCCCCCChhhh
Q psy11100 90 E---TGLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 90 ~---~~~i~~w~~~~~~~~~~~ 108 (110)
. .|.|.+||.++...+.+.
T Consensus 120 ~~n~~G~l~~wd~~~~~~i~~~ 141 (194)
T PF08662_consen 120 FGNLNGDLEFWDVRKKKKISTF 141 (194)
T ss_pred ccCCCcEEEEEECCCCEEeecc
Confidence 4 467999999977665443
No 98
>KOG0771|consensus
Probab=99.17 E-value=1.1e-10 Score=76.10 Aligned_cols=73 Identities=19% Similarity=0.241 Sum_probs=64.6
Q ss_pred EEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEE
Q psy11100 18 NCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 97 (110)
Q Consensus 18 ~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w 97 (110)
.+++|+++|..+++++.||.+|+|+..... .+.....|...|.++.|+|||+++++.+.+ ..++|
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~--------------t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW 212 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML--------------TILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVW 212 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch--------------hhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEE
Confidence 678999999999999999999999988765 445566788999999999999999999999 99999
Q ss_pred eCCCCCCh
Q psy11100 98 MLYKCNDD 105 (110)
Q Consensus 98 ~~~~~~~~ 105 (110)
+..+|..+
T Consensus 213 ~~~~g~~~ 220 (398)
T KOG0771|consen 213 SVNTGAAL 220 (398)
T ss_pred EeccCchh
Confidence 99998543
No 99
>KOG0281|consensus
Probab=99.17 E-value=6.1e-11 Score=76.45 Aligned_cols=83 Identities=16% Similarity=0.271 Sum_probs=63.6
Q ss_pred eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100 8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS 87 (110)
Q Consensus 8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 87 (110)
+...||.+.|..+.|+ .+++++++.|.++++|+..+.. ...++.+|...|.|++. .|.++++
T Consensus 314 rVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~e--------------fvRtl~gHkRGIAClQY--r~rlvVS 375 (499)
T KOG0281|consen 314 RVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCE--------------FVRTLNGHKRGIACLQY--RDRLVVS 375 (499)
T ss_pred HHHhhhhhheeeeccc--cceEEEecCCceEEEEecccee--------------eehhhhcccccceehhc--cCeEEEe
Confidence 3445788888887764 5588888888888888888776 66777888777777765 6777888
Q ss_pred ecCCCcEEEEeCCCCCChhhh
Q psy11100 88 SDETGLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 88 ~~~~~~i~~w~~~~~~~~~~~ 108 (110)
|+.|.+|++||++.|..++-+
T Consensus 376 GSSDntIRlwdi~~G~cLRvL 396 (499)
T KOG0281|consen 376 GSSDNTIRLWDIECGACLRVL 396 (499)
T ss_pred cCCCceEEEEeccccHHHHHH
Confidence 888888888888888776543
No 100
>KOG0308|consensus
Probab=99.16 E-value=2.5e-10 Score=78.18 Aligned_cols=84 Identities=25% Similarity=0.330 Sum_probs=76.3
Q ss_pred CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100 11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE 90 (110)
Q Consensus 11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 90 (110)
.++...|.+++-++.|..+++|+..+.+++||-.... .++.+.+|+..|..+..+++|..+++++.
T Consensus 168 sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~--------------kimkLrGHTdNVr~ll~~dDGt~~ls~sS 233 (735)
T KOG0308|consen 168 SGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK--------------KIMKLRGHTDNVRVLLVNDDGTRLLSASS 233 (735)
T ss_pred CCCccceeeeecCCcceEEEecCcccceEEecccccc--------------ceeeeeccccceEEEEEcCCCCeEeecCC
Confidence 3788899999999999999999999999999999876 56788899999999999999999999999
Q ss_pred CCcEEEEeCCCCCChhhh
Q psy11100 91 TGLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 91 ~~~i~~w~~~~~~~~~~~ 108 (110)
||+|++||+...+++.++
T Consensus 234 DgtIrlWdLgqQrCl~T~ 251 (735)
T KOG0308|consen 234 DGTIRLWDLGQQRCLATY 251 (735)
T ss_pred CceEEeeeccccceeeeE
Confidence 999999999988776543
No 101
>KOG3914|consensus
Probab=99.15 E-value=1.4e-10 Score=75.24 Aligned_cols=86 Identities=14% Similarity=0.118 Sum_probs=70.9
Q ss_pred eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeE-EeeccCCCeEEEEEcCCCCeEE
Q psy11100 8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQ-SLQGHSGKVRAIIWNEQYEKLT 86 (110)
Q Consensus 8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~ 86 (110)
+...+|-+-+.+++++||++.++++..|+.|++-...... .+. -+.+|+..|+.++.-++ ..|+
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f--------------~IesfclGH~eFVS~isl~~~-~~Ll 209 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF--------------VIESFCLGHKEFVSTISLTDN-YLLL 209 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc--------------chhhhccccHhheeeeeeccC-ceee
Confidence 4456899999999999999999999999999997766543 222 24579999999998664 4589
Q ss_pred EecCCCcEEEEeCCCCCChhhh
Q psy11100 87 SSDETGLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 87 s~~~~~~i~~w~~~~~~~~~~~ 108 (110)
|+++|++|++||+.+|+.++++
T Consensus 210 S~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 210 SGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred ecCCCCcEEEEecccCCccccc
Confidence 9999999999999999987653
No 102
>KOG2111|consensus
Probab=99.15 E-value=1.2e-09 Score=69.51 Aligned_cols=78 Identities=15% Similarity=0.380 Sum_probs=67.5
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCc-EEEEEcCCCCCcCCcccccccceeeeEEeec--cCCCeEEEEEcCCCCeEEEe
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGL-LKVLKLDTGKESTGQVAAANVNLAMNQSLQG--HSGKVRAIIWNEQYEKLTSS 88 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~ 88 (110)
.|.+.|.|++++.+|..+|+++..|+ +|+||...+. .+..+.. ....+.+++|||++.+++.+
T Consensus 179 AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~--------------~l~E~RRG~d~A~iy~iaFSp~~s~Lavs 244 (346)
T KOG2111|consen 179 AHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGT--------------LLQELRRGVDRADIYCIAFSPNSSWLAVS 244 (346)
T ss_pred cccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCc--------------EeeeeecCCchheEEEEEeCCCccEEEEE
Confidence 79999999999999999999999986 6899999887 4555543 34679999999999999999
Q ss_pred cCCCcEEEEeCCCCC
Q psy11100 89 DETGLIIVWMLYKCN 103 (110)
Q Consensus 89 ~~~~~i~~w~~~~~~ 103 (110)
+..|+|.++.++...
T Consensus 245 SdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 245 SDKGTLHIFSLRDTE 259 (346)
T ss_pred cCCCeEEEEEeecCC
Confidence 999999999887644
No 103
>KOG0267|consensus
Probab=99.15 E-value=3.6e-11 Score=82.98 Aligned_cols=82 Identities=22% Similarity=0.432 Sum_probs=73.9
Q ss_pred ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100 9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS 88 (110)
Q Consensus 9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 88 (110)
.+.+|...|.++.|+|+|++++.++.|+.++|||+..+. .+..+..|.+.+..+.|+|..-++++|
T Consensus 149 ~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk--------------~~~ef~~~e~~v~sle~hp~e~Lla~G 214 (825)
T KOG0267|consen 149 TYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK--------------LSKEFKSHEGKVQSLEFHPLEVLLAPG 214 (825)
T ss_pred eecCCcceeEEEeecCCCceeeccCCcceeeeecccccc--------------cccccccccccccccccCchhhhhccC
Confidence 444688889999999999999999999999999999887 677889999999999999999899999
Q ss_pred cCCCcEEEEeCCCCCC
Q psy11100 89 DETGLIIVWMLYKCND 104 (110)
Q Consensus 89 ~~~~~i~~w~~~~~~~ 104 (110)
+.|.++++||+++-..
T Consensus 215 s~d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 215 SSDRTVRFWDLETFEV 230 (825)
T ss_pred CCCceeeeeccceeEE
Confidence 9999999999985443
No 104
>KOG0274|consensus
Probab=99.15 E-value=4.1e-10 Score=77.41 Aligned_cols=80 Identities=30% Similarity=0.434 Sum_probs=71.3
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 91 (110)
+|++.|.++..+ +..+++|+.|+.|++||+.... ++..+.+|...|.++.+... ..+++++.|
T Consensus 329 ~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~--------------cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D 391 (537)
T KOG0274|consen 329 GHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGK--------------CLKSLSGHTGRVYSLIVDSE-NRLLSGSLD 391 (537)
T ss_pred cccccEEEEEec--CCEEEEEecCceEEEEEhhhce--------------eeeeecCCcceEEEEEecCc-ceEEeeeec
Confidence 599999999887 8889999999999999999876 88999999999999988554 789999999
Q ss_pred CcEEEEeCCCC-CChhhh
Q psy11100 92 GLIIVWMLYKC-NDDDEW 108 (110)
Q Consensus 92 ~~i~~w~~~~~-~~~~~~ 108 (110)
++|++||+++. +.+..+
T Consensus 392 ~~IkvWdl~~~~~c~~tl 409 (537)
T KOG0274|consen 392 TTIKVWDLRTKRKCIHTL 409 (537)
T ss_pred cceEeecCCchhhhhhhh
Confidence 99999999998 666554
No 105
>KOG2096|consensus
Probab=99.15 E-value=2.4e-10 Score=72.96 Aligned_cols=37 Identities=11% Similarity=0.164 Sum_probs=33.7
Q ss_pred ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCC
Q psy11100 9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45 (110)
Q Consensus 9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~ 45 (110)
...+|...|++++|+.||..|++.+.|+.+++|+++.
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~D 117 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRD 117 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecch
Confidence 4458999999999999999999999999999999754
No 106
>KOG1539|consensus
Probab=99.15 E-value=4.6e-10 Score=78.62 Aligned_cols=75 Identities=12% Similarity=0.267 Sum_probs=63.4
Q ss_pred ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100 9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS 88 (110)
Q Consensus 9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 88 (110)
...+|+++++++.|||||+++++++.|+++++||+.++. .+-.+. -......+.|||+|.+|+++
T Consensus 571 ~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~--------------lID~~~-vd~~~~sls~SPngD~LAT~ 635 (910)
T KOG1539|consen 571 EFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGT--------------LIDGLL-VDSPCTSLSFSPNGDFLATV 635 (910)
T ss_pred HhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcc--------------eeeeEe-cCCcceeeEECCCCCEEEEE
Confidence 445899999999999999999999999999999999886 333332 24667799999999999999
Q ss_pred cCC-CcEEEEe
Q psy11100 89 DET-GLIIVWM 98 (110)
Q Consensus 89 ~~~-~~i~~w~ 98 (110)
-.| .-|++|-
T Consensus 636 Hvd~~gIylWs 646 (910)
T KOG1539|consen 636 HVDQNGIYLWS 646 (910)
T ss_pred EecCceEEEEE
Confidence 887 5688994
No 107
>KOG0299|consensus
Probab=99.14 E-value=2.4e-10 Score=75.37 Aligned_cols=82 Identities=20% Similarity=0.334 Sum_probs=73.3
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 91 (110)
.|...+.+++.++||+++++|..|..+.||+..+.. ....+.+|.+.|.+++|-....-+.+++.|
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~e--------------hv~~~~ghr~~V~~L~fr~gt~~lys~s~D 265 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLE--------------HVKVFKGHRGAVSSLAFRKGTSELYSASAD 265 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccc--------------hhhcccccccceeeeeeecCccceeeeecC
Confidence 788899999999999999999999999999999887 667789999999999997766669999999
Q ss_pred CcEEEEeCCCCCChhh
Q psy11100 92 GLIIVWMLYKCNDDDE 107 (110)
Q Consensus 92 ~~i~~w~~~~~~~~~~ 107 (110)
.++.+|++..-..+.+
T Consensus 266 rsvkvw~~~~~s~vet 281 (479)
T KOG0299|consen 266 RSVKVWSIDQLSYVET 281 (479)
T ss_pred CceEEEehhHhHHHHH
Confidence 9999999887665544
No 108
>KOG2110|consensus
Probab=99.14 E-value=7.7e-10 Score=71.48 Aligned_cols=84 Identities=18% Similarity=0.259 Sum_probs=70.6
Q ss_pred CCCceEEEEEecCCCEEEEEe--cCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100 13 NNTKVNCLAWHQNQGWIAVGG--DDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE 90 (110)
Q Consensus 13 h~~~v~~~~~~p~~~~l~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 90 (110)
+..++.+++.++.+.+++.-+ ..|.|.+||..... ....+..|.+.+.+++|+++|.++|+++.
T Consensus 128 n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~--------------~v~~I~aH~~~lAalafs~~G~llATASe 193 (391)
T KOG2110|consen 128 NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ--------------PVNTINAHKGPLAALAFSPDGTLLATASE 193 (391)
T ss_pred CccceEeeccCCCCceEEecCCCCCceEEEEEcccce--------------eeeEEEecCCceeEEEECCCCCEEEEecc
Confidence 444566666666677877643 35889999999876 67888999999999999999999999999
Q ss_pred CCc-EEEEeCCCCCChhhhhC
Q psy11100 91 TGL-IIVWMLYKCNDDDEWKR 110 (110)
Q Consensus 91 ~~~-i~~w~~~~~~~~~~~~~ 110 (110)
.|+ |+|+.+.+|+.+-|+||
T Consensus 194 KGTVIRVf~v~~G~kl~eFRR 214 (391)
T KOG2110|consen 194 KGTVIRVFSVPEGQKLYEFRR 214 (391)
T ss_pred CceEEEEEEcCCccEeeeeeC
Confidence 987 67999999999999986
No 109
>KOG0269|consensus
Probab=99.13 E-value=2.3e-10 Score=79.51 Aligned_cols=76 Identities=24% Similarity=0.570 Sum_probs=60.7
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEec-
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSSD- 89 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~- 89 (110)
.|+++|.|+.|+|++.+||+|+.|+.++||+...... . ...++ .-...|..++|-|.-+. |++++
T Consensus 218 AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~---~---------~~~tI-nTiapv~rVkWRP~~~~hLAtcsm 284 (839)
T KOG0269|consen 218 AHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA---K---------PKHTI-NTIAPVGRVKWRPARSYHLATCSM 284 (839)
T ss_pred cccCceEEEeecCCCceeeecCCCccEEEEeccCCCc---c---------ceeEE-eecceeeeeeeccCccchhhhhhc
Confidence 7999999999999999999999999999999986540 0 11222 12467899999998665 77776
Q ss_pred -CCCcEEEEeCC
Q psy11100 90 -ETGLIIVWMLY 100 (110)
Q Consensus 90 -~~~~i~~w~~~ 100 (110)
.|..|.|||++
T Consensus 285 v~dtsV~VWDvr 296 (839)
T KOG0269|consen 285 VVDTSVHVWDVR 296 (839)
T ss_pred cccceEEEEeec
Confidence 58899999986
No 110
>KOG0306|consensus
Probab=99.13 E-value=2.9e-10 Score=79.01 Aligned_cols=85 Identities=18% Similarity=0.116 Sum_probs=75.8
Q ss_pred ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100 9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS 88 (110)
Q Consensus 9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 88 (110)
-..+|...|.++.|.|+...+.+++.|+.++-||...-. .++.+.+|...|.+++.+|+|.+++++
T Consensus 587 S~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe--------------~iq~L~~H~~ev~cLav~~~G~~vvs~ 652 (888)
T KOG0306|consen 587 SFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE--------------EIQKLDGHHSEVWCLAVSPNGSFVVSS 652 (888)
T ss_pred hhhcccCceeEEEEcccceeEEEecCcceEEeechhhhh--------------hheeeccchheeeeeEEcCCCCeEEec
Confidence 345799999999999999999999999999999998776 778999999999999999999999999
Q ss_pred cCCCcEEEEeCCCCCChhh
Q psy11100 89 DETGLIIVWMLYKCNDDDE 107 (110)
Q Consensus 89 ~~~~~i~~w~~~~~~~~~~ 107 (110)
++|.+|++|.-.....+.|
T Consensus 653 shD~sIRlwE~tde~~~lE 671 (888)
T KOG0306|consen 653 SHDKSIRLWERTDEILILE 671 (888)
T ss_pred cCCceeEeeeccCcceeee
Confidence 9999999998776555443
No 111
>KOG0281|consensus
Probab=99.12 E-value=3.2e-10 Score=73.20 Aligned_cols=79 Identities=22% Similarity=0.354 Sum_probs=64.3
Q ss_pred eeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEE
Q psy11100 7 KKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT 86 (110)
Q Consensus 7 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 86 (110)
.++..||++.|.|+.| +.+.+++|+.|.+|++||..++. ++.++-+|...|..+.|+. .+++
T Consensus 230 ~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge--------------~l~tlihHceaVLhlrf~n--g~mv 291 (499)
T KOG0281|consen 230 LKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGE--------------PLNTLIHHCEAVLHLRFSN--GYMV 291 (499)
T ss_pred HHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCc--------------hhhHHhhhcceeEEEEEeC--CEEE
Confidence 3456689999988877 45588999999999999999887 6777778888898998854 4678
Q ss_pred EecCCCcEEEEeCCCCC
Q psy11100 87 SSDETGLIIVWMLYKCN 103 (110)
Q Consensus 87 s~~~~~~i~~w~~~~~~ 103 (110)
+++.|.++.+||+....
T Consensus 292 tcSkDrsiaVWdm~sps 308 (499)
T KOG0281|consen 292 TCSKDRSIAVWDMASPT 308 (499)
T ss_pred EecCCceeEEEeccCch
Confidence 88889999999987665
No 112
>KOG0646|consensus
Probab=99.12 E-value=2.3e-10 Score=75.55 Aligned_cols=73 Identities=19% Similarity=0.366 Sum_probs=67.6
Q ss_pred CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCc
Q psy11100 14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGL 93 (110)
Q Consensus 14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~ 93 (110)
.++|.+++-+|+|.+++.|...|.+++|.+.++. .+..+..|...|.++.|+-||.+|++++.||.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~--------------LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~ 146 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGI--------------LLNVLSAHYQSITCLKFSDDGSHIITGSKDGA 146 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEecccc--------------HHHHHHhhccceeEEEEeCCCcEEEecCCCcc
Confidence 4679999999999999999899999999999997 67778899999999999999999999999999
Q ss_pred EEEEeCC
Q psy11100 94 IIVWMLY 100 (110)
Q Consensus 94 i~~w~~~ 100 (110)
|.+|.+-
T Consensus 147 V~vW~l~ 153 (476)
T KOG0646|consen 147 VLVWLLT 153 (476)
T ss_pred EEEEEEE
Confidence 9999753
No 113
>KOG0288|consensus
Probab=99.11 E-value=4e-10 Score=73.68 Aligned_cols=69 Identities=20% Similarity=0.440 Sum_probs=59.5
Q ss_pred ceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCC--CeEEEEEcCCCCeEEEecCCCc
Q psy11100 16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSG--KVRAIIWNEQYEKLTSSDETGL 93 (110)
Q Consensus 16 ~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~s~~~~~~ 93 (110)
..+.+.|||++.++++|+.||.|++|++.+++ +...+...+. .|.+++|+|.|..+++++.++.
T Consensus 389 DwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgK--------------lE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~ 454 (459)
T KOG0288|consen 389 DWTRVVFSPDGSYVAAGSADGSVYIWSVFTGK--------------LEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKA 454 (459)
T ss_pred ccceeEECCCCceeeeccCCCcEEEEEccCce--------------EEEEeccCCCCcceEEEEEcCCCchhhcccCCcc
Confidence 36778999999999999999999999999987 4455554333 6999999999999999999999
Q ss_pred EEEEe
Q psy11100 94 IIVWM 98 (110)
Q Consensus 94 i~~w~ 98 (110)
+.+|.
T Consensus 455 v~lW~ 459 (459)
T KOG0288|consen 455 VTLWT 459 (459)
T ss_pred eEecC
Confidence 99984
No 114
>KOG0310|consensus
Probab=99.10 E-value=1.3e-09 Score=72.45 Aligned_cols=80 Identities=14% Similarity=0.133 Sum_probs=65.9
Q ss_pred CCCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100 11 IPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 11 ~~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 89 (110)
.+|+.+|.|.+|+|. +..+++|+.||.|++||..... ....--.|..+|-.+.+=|.|..+++++
T Consensus 150 ~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~--------------~~v~elnhg~pVe~vl~lpsgs~iasAg 215 (487)
T KOG0310|consen 150 SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT--------------SRVVELNHGCPVESVLALPSGSLIASAG 215 (487)
T ss_pred cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC--------------ceeEEecCCCceeeEEEcCCCCEEEEcC
Confidence 389999999999996 5689999999999999999874 1122346888999999999999999887
Q ss_pred CCCcEEEEeCCCCCCh
Q psy11100 90 ETGLIIVWMLYKCNDD 105 (110)
Q Consensus 90 ~~~~i~~w~~~~~~~~ 105 (110)
.+.+++||+.+|...
T Consensus 216 -Gn~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 216 -GNSVKVWDLTTGGQL 230 (487)
T ss_pred -CCeEEEEEecCCcee
Confidence 568999999965543
No 115
>KOG0643|consensus
Probab=99.10 E-value=2e-09 Score=67.30 Aligned_cols=97 Identities=15% Similarity=0.183 Sum_probs=72.7
Q ss_pred cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcC-----Cccc------------------------------
Q psy11100 10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKEST-----GQVA------------------------------ 54 (110)
Q Consensus 10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~-----~~~~------------------------------ 54 (110)
+.+|++.|.|+..+-+...+++|+.|.++++||...+.... ...+
T Consensus 48 y~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi 127 (327)
T KOG0643|consen 48 YDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDI 127 (327)
T ss_pred ecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEc
Confidence 45899999999999999999999999999999998774210 0000
Q ss_pred c----cccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCChh
Q psy11100 55 A----ANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDD 106 (110)
Q Consensus 55 ~----~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~ 106 (110)
+ ....-.+...+..+.+.+..+-|.|.++.++++..+|.|..||.++|..+.
T Consensus 128 ~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v 183 (327)
T KOG0643|consen 128 RDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELV 183 (327)
T ss_pred cCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceee
Confidence 0 000111133444456778899999999999999999999999999985443
No 116
>KOG4283|consensus
Probab=99.09 E-value=8.1e-10 Score=70.01 Aligned_cols=75 Identities=25% Similarity=0.432 Sum_probs=64.2
Q ss_pred CCceEEEEEecC---CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEec
Q psy11100 14 NTKVNCLAWHQN---QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSSD 89 (110)
Q Consensus 14 ~~~v~~~~~~p~---~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~ 89 (110)
.+.|..-+++|- -.++++|..+-.|++.|+.++. ...++.+|.+.|..+.|+|..++ |++++
T Consensus 143 e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs--------------~sH~LsGHr~~vlaV~Wsp~~e~vLatgs 208 (397)
T KOG4283|consen 143 EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS--------------FSHTLSGHRDGVLAVEWSPSSEWVLATGS 208 (397)
T ss_pred CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc--------------ceeeeccccCceEEEEeccCceeEEEecC
Confidence 356777778883 3357788888899999999987 67889999999999999999888 88999
Q ss_pred CCCcEEEEeCCCC
Q psy11100 90 ETGLIIVWMLYKC 102 (110)
Q Consensus 90 ~~~~i~~w~~~~~ 102 (110)
.||.+++||++.-
T Consensus 209 aDg~irlWDiRra 221 (397)
T KOG4283|consen 209 ADGAIRLWDIRRA 221 (397)
T ss_pred CCceEEEEEeecc
Confidence 9999999999854
No 117
>KOG2110|consensus
Probab=99.08 E-value=3e-09 Score=68.80 Aligned_cols=78 Identities=14% Similarity=0.279 Sum_probs=65.5
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCc-EEEEEcCCCCCcCCcccccccceeeeEEeecc--CCCeEEEEEcCCCCeEEEe
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGL-LKVLKLDTGKESTGQVAAANVNLAMNQSLQGH--SGKVRAIIWNEQYEKLTSS 88 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~ 88 (110)
.|.+.+.+++|+++|.+||+++..|+ +|++.+..+. .+..+..- -..|.+++|+|++++|++.
T Consensus 171 aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~--------------kl~eFRRG~~~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 171 AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQ--------------KLYEFRRGTYPVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCcc--------------EeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence 69999999999999999999999886 6899998876 45555432 2457899999999999999
Q ss_pred cCCCcEEEEeCCCCC
Q psy11100 89 DETGLIIVWMLYKCN 103 (110)
Q Consensus 89 ~~~~~i~~w~~~~~~ 103 (110)
+..++|.++.+.+-.
T Consensus 237 S~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 237 SNTETVHIFKLEKVS 251 (391)
T ss_pred cCCCeEEEEEecccc
Confidence 999999999876543
No 118
>KOG0313|consensus
Probab=99.07 E-value=1.6e-09 Score=70.31 Aligned_cols=96 Identities=19% Similarity=0.273 Sum_probs=74.0
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCc-----CC-----ccc-ccccceeeeEEeeccCCCeEEEEEcC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKES-----TG-----QVA-AANVNLAMNQSLQGHSGKVRAIIWNE 80 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~-----~~-----~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~ 80 (110)
||...|.++...++|..+++|+-|..+++|+....... .. +.+ ....-..++.++.+|...|..+.|++
T Consensus 191 GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d 270 (423)
T KOG0313|consen 191 GHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD 270 (423)
T ss_pred ccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC
Confidence 89999999999999999999999999999993321111 00 000 11112225678899999999999988
Q ss_pred CCCeEEEecCCCcEEEEeCCCCCChhhh
Q psy11100 81 QYEKLTSSDETGLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 81 ~~~~l~s~~~~~~i~~w~~~~~~~~~~~ 108 (110)
...+.+++-|.+|+.||+.++..+.++
T Consensus 271 -~~v~yS~SwDHTIk~WDletg~~~~~~ 297 (423)
T KOG0313|consen 271 -ATVIYSVSWDHTIKVWDLETGGLKSTL 297 (423)
T ss_pred -CCceEeecccceEEEEEeecccceeee
Confidence 667889999999999999999877654
No 119
>KOG0274|consensus
Probab=99.07 E-value=2.8e-09 Score=73.39 Aligned_cols=82 Identities=23% Similarity=0.248 Sum_probs=60.3
Q ss_pred cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100 10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 89 (110)
..+|.+.|.++++...+.++++|+.|.++++||..++. +...+.+|.+.+.++.. ....+.+++
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~--------------C~~~l~gh~stv~~~~~--~~~~~~sgs 308 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE--------------CTHSLQGHTSSVRCLTI--DPFLLVSGS 308 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc--------------EEEEecCCCceEEEEEc--cCceEeecc
Confidence 45899999999998878899999999999999988775 55666666666655543 334455566
Q ss_pred CCCcEEEEeCCCCCChhh
Q psy11100 90 ETGLIIVWMLYKCNDDDE 107 (110)
Q Consensus 90 ~~~~i~~w~~~~~~~~~~ 107 (110)
.|.+|++|++.++..+..
T Consensus 309 ~D~tVkVW~v~n~~~l~l 326 (537)
T KOG0274|consen 309 RDNTVKVWDVTNGACLNL 326 (537)
T ss_pred CCceEEEEeccCcceEEE
Confidence 666666666666655443
No 120
>KOG0642|consensus
Probab=99.07 E-value=1.8e-09 Score=72.89 Aligned_cols=89 Identities=18% Similarity=0.316 Sum_probs=72.1
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 91 (110)
+|.++|.|+..+++++.+.+|+.||+|+.|++....++....+ ......++.+|.+.|..+++|+....|++++.|
T Consensus 342 aH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~d----p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~D 417 (577)
T KOG0642|consen 342 AHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYD----PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSD 417 (577)
T ss_pred cccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccC----cchhccceeccccceeeeeecccccceeeecCC
Confidence 7999999999999999999999999999998874332111110 111456788999999999999998889999999
Q ss_pred CcEEEEeCCCCCC
Q psy11100 92 GLIIVWMLYKCND 104 (110)
Q Consensus 92 ~~i~~w~~~~~~~ 104 (110)
|+++.|+.....-
T Consensus 418 gTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 418 GTVRLWEPTEESP 430 (577)
T ss_pred ceEEeeccCCcCc
Confidence 9999999876543
No 121
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.06 E-value=1.9e-09 Score=48.82 Aligned_cols=37 Identities=30% Similarity=0.585 Sum_probs=35.0
Q ss_pred eeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEe
Q psy11100 62 MNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWM 98 (110)
Q Consensus 62 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~ 98 (110)
+...+.+|.+.|.+++|+|++..+++++.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 5678899999999999999999999999999999997
No 122
>KOG0322|consensus
Probab=99.06 E-value=6.1e-10 Score=69.47 Aligned_cols=71 Identities=21% Similarity=0.273 Sum_probs=65.8
Q ss_pred CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100 15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLI 94 (110)
Q Consensus 15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i 94 (110)
-.|..+..-||++.+|+++-|+.+++|+-.+.. ++..++.|+..|++++|+|+.+.++.++.|+.|
T Consensus 252 pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~--------------pLAVLkyHsagvn~vAfspd~~lmAaaskD~rI 317 (323)
T KOG0322|consen 252 PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN--------------PLAVLKYHSAGVNAVAFSPDCELMAAASKDARI 317 (323)
T ss_pred CCccceEEccCCcEEeecccCCcEEEEEeccCC--------------chhhhhhhhcceeEEEeCCCCchhhhccCCceE
Confidence 457778899999999999999999999999887 778899999999999999999999999999999
Q ss_pred EEEeC
Q psy11100 95 IVWML 99 (110)
Q Consensus 95 ~~w~~ 99 (110)
-+|++
T Consensus 318 SLWkL 322 (323)
T KOG0322|consen 318 SLWKL 322 (323)
T ss_pred Eeeec
Confidence 99986
No 123
>KOG1332|consensus
Probab=99.05 E-value=1.2e-09 Score=67.62 Aligned_cols=88 Identities=19% Similarity=0.290 Sum_probs=74.5
Q ss_pred eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcC--CCCeE
Q psy11100 8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNE--QYEKL 85 (110)
Q Consensus 8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l 85 (110)
++...|...|......--|..|++++.|+.|+|+...... +...+.++.+|.++|..++|.. .|.+|
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~-----------~s~ll~~L~Gh~GPVwqv~wahPk~G~iL 73 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG-----------QSKLLAELTGHSGPVWKVAWAHPKFGTIL 73 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCC-----------CceeeeEecCCCCCeeEEeecccccCcEe
Confidence 4566788888887777779999999999999999998764 1125778999999999999965 79999
Q ss_pred EEecCCCcEEEEeCCCCCChh
Q psy11100 86 TSSDETGLIIVWMLYKCNDDD 106 (110)
Q Consensus 86 ~s~~~~~~i~~w~~~~~~~~~ 106 (110)
+|++.|+.+.+|.-.++++..
T Consensus 74 AScsYDgkVIiWke~~g~w~k 94 (299)
T KOG1332|consen 74 ASCSYDGKVIIWKEENGRWTK 94 (299)
T ss_pred eEeecCceEEEEecCCCchhh
Confidence 999999999999999987643
No 124
>KOG1332|consensus
Probab=99.04 E-value=1.7e-09 Score=66.89 Aligned_cols=80 Identities=20% Similarity=0.272 Sum_probs=65.9
Q ss_pred CCCCCceEEEEE-ec-CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC--CCeEE
Q psy11100 11 IPNNTKVNCLAW-HQ-NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ--YEKLT 86 (110)
Q Consensus 11 ~~h~~~v~~~~~-~p-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~ 86 (110)
.+|.++|..++| +| -|.+|++++.||.|.+|.-..+. +.-......|...|++++|.|. |-.|+
T Consensus 53 ~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~------------w~k~~e~~~h~~SVNsV~wapheygl~La 120 (299)
T KOG1332|consen 53 TGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR------------WTKAYEHAAHSASVNSVAWAPHEYGLLLA 120 (299)
T ss_pred cCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCc------------hhhhhhhhhhcccceeecccccccceEEE
Confidence 389999999999 55 59999999999999999888764 1123445678899999999986 44599
Q ss_pred EecCCCcEEEEeCCCC
Q psy11100 87 SSDETGLIIVWMLYKC 102 (110)
Q Consensus 87 s~~~~~~i~~w~~~~~ 102 (110)
+++.||.|.+.++...
T Consensus 121 casSDG~vsvl~~~~~ 136 (299)
T KOG1332|consen 121 CASSDGKVSVLTYDSS 136 (299)
T ss_pred EeeCCCcEEEEEEcCC
Confidence 9999999999988754
No 125
>KOG0650|consensus
Probab=99.04 E-value=3.6e-09 Score=72.23 Aligned_cols=80 Identities=16% Similarity=0.327 Sum_probs=64.4
Q ss_pred eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EE
Q psy11100 8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LT 86 (110)
Q Consensus 8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~ 86 (110)
.++.+|++.|.++...|.|.+|++|+.||+|+||.+.++. ++.++.- .+.|.+++|+|.+.. ++
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR--------------cvr~~~~-d~~I~~vaw~P~~~~~vL 458 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR--------------CVRTVQF-DSEIRSVAWNPLSDLCVL 458 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce--------------EEEEEee-cceeEEEEecCCCCceeE
Confidence 3456899999999999999999999999999999999987 5555543 468999999998887 55
Q ss_pred EecCCCcEEEEeCCCC
Q psy11100 87 SSDETGLIIVWMLYKC 102 (110)
Q Consensus 87 s~~~~~~i~~w~~~~~ 102 (110)
.++....+.+.+..-|
T Consensus 459 AvA~~~~~~ivnp~~G 474 (733)
T KOG0650|consen 459 AVAVGECVLIVNPIFG 474 (733)
T ss_pred EEEecCceEEeCcccc
Confidence 5555555766666544
No 126
>KOG0270|consensus
Probab=99.03 E-value=4.7e-10 Score=73.81 Aligned_cols=78 Identities=27% Similarity=0.397 Sum_probs=68.5
Q ss_pred cCCCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC-eEEE
Q psy11100 10 AIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE-KLTS 87 (110)
Q Consensus 10 ~~~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s 87 (110)
..+|+..|..++|+.. ...|++|+.|.+|++||+..+. +...+..|...|.+++|+|... .+++
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~--------------p~~s~~~~~k~Vq~l~wh~~~p~~LLs 304 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGK--------------PKSSITHHGKKVQTLEWHPYEPSVLLS 304 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCC--------------cceehhhcCCceeEEEecCCCceEEEe
Confidence 3479999999999886 5679999999999999999987 6677888999999999999754 5999
Q ss_pred ecCCCcEEEEeCCC
Q psy11100 88 SDETGLIIVWMLYK 101 (110)
Q Consensus 88 ~~~~~~i~~w~~~~ 101 (110)
|+.|+++.+.|.+.
T Consensus 305 Gs~D~~V~l~D~R~ 318 (463)
T KOG0270|consen 305 GSYDGTVALKDCRD 318 (463)
T ss_pred ccccceEEeeeccC
Confidence 99999999999984
No 127
>KOG1310|consensus
Probab=99.03 E-value=2.2e-09 Score=72.85 Aligned_cols=77 Identities=25% Similarity=0.339 Sum_probs=67.2
Q ss_pred CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEe-eccCCCeEEEEEcCC--CCeEEE
Q psy11100 11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL-QGHSGKVRAIIWNEQ--YEKLTS 87 (110)
Q Consensus 11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~--~~~l~s 87 (110)
.||++-|.|+.|+.+|.+|++|+.|-.+.|||....+ .+..+ .+|...|.++.|-|. .+.+++
T Consensus 47 ~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K--------------llhsI~TgHtaNIFsvKFvP~tnnriv~s 112 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK--------------LLHSISTGHTANIFSVKFVPYTNNRIVLS 112 (758)
T ss_pred ccccceecceeecCCCCEEeecCCcceEEeecchhcc--------------eeeeeecccccceeEEeeeccCCCeEEEe
Confidence 4899999999999999999999999999999999765 34444 479999999999884 456899
Q ss_pred ecCCCcEEEEeCCC
Q psy11100 88 SDETGLIIVWMLYK 101 (110)
Q Consensus 88 ~~~~~~i~~w~~~~ 101 (110)
+..|..|+++|+..
T Consensus 113 gAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 113 GAGDKLIKLFDLDS 126 (758)
T ss_pred ccCcceEEEEeccc
Confidence 99999999999874
No 128
>KOG0306|consensus
Probab=99.02 E-value=1.2e-09 Score=76.10 Aligned_cols=81 Identities=17% Similarity=0.239 Sum_probs=73.1
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 91 (110)
||.=+|.|+..+||+..+++|+.|.+|++|-++-+. +-..+-.|.+.|.++.|-|+...+.+++.|
T Consensus 548 GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD--------------CHKS~fAHdDSvm~V~F~P~~~~FFt~gKD 613 (888)
T KOG0306|consen 548 GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD--------------CHKSFFAHDDSVMSVQFLPKTHLFFTCGKD 613 (888)
T ss_pred ccccceeEEeccCCcCeEEeccCCCceEEeccccch--------------hhhhhhcccCceeEEEEcccceeEEEecCc
Confidence 899999999999999999999999999999999877 667788899999999999999999999999
Q ss_pred CcEEEEeCCCCCChh
Q psy11100 92 GLIIVWMLYKCNDDD 106 (110)
Q Consensus 92 ~~i~~w~~~~~~~~~ 106 (110)
+.++.||-.+-..+.
T Consensus 614 ~kvKqWDg~kFe~iq 628 (888)
T KOG0306|consen 614 GKVKQWDGEKFEEIQ 628 (888)
T ss_pred ceEEeechhhhhhhe
Confidence 999999876544443
No 129
>KOG0268|consensus
Probab=99.02 E-value=8.1e-10 Score=71.45 Aligned_cols=76 Identities=12% Similarity=0.248 Sum_probs=64.5
Q ss_pred ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccC---CCeEEEEEcCCCCeE
Q psy11100 9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHS---GKVRAIIWNEQYEKL 85 (110)
Q Consensus 9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l 85 (110)
...+|.+.|.++.|+|.|+-+++|+.|.+++||....+. . ... .|+ +.|.++.||.|.+++
T Consensus 267 v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~--------------S-Rdi-YhtkRMq~V~~Vk~S~Dskyi 330 (433)
T KOG0268|consen 267 VHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH--------------S-RDI-YHTKRMQHVFCVKYSMDSKYI 330 (433)
T ss_pred hhcccceeEEEeccCCCcchhccccccceEEEeecCCCc--------------c-hhh-hhHhhhheeeEEEEeccccEE
Confidence 445799999999999999999999999999999998775 1 111 222 568999999999999
Q ss_pred EEecCCCcEEEEeCC
Q psy11100 86 TSSDETGLIIVWMLY 100 (110)
Q Consensus 86 ~s~~~~~~i~~w~~~ 100 (110)
+||++|+.|++|...
T Consensus 331 ~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 331 ISGSDDGNVRLWKAK 345 (433)
T ss_pred EecCCCcceeeeecc
Confidence 999999999999754
No 130
>KOG0294|consensus
Probab=99.02 E-value=3.4e-09 Score=67.50 Aligned_cols=74 Identities=22% Similarity=0.405 Sum_probs=65.4
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC--eEEEec
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE--KLTSSD 89 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~s~~ 89 (110)
.|.+.+++++. ++.++++|+.|..+++||..... .+..+..|.+.|+++.|.+.-. +|+++.
T Consensus 41 aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~--------------qlg~ll~HagsitaL~F~~~~S~shLlS~s 104 (362)
T KOG0294|consen 41 AHAGSITALAV--SGPYVASGSSDETIHIYDMRKRK--------------QLGILLSHAGSITALKFYPPLSKSHLLSGS 104 (362)
T ss_pred ccccceeEEEe--cceeEeccCCCCcEEEEeccchh--------------hhcceeccccceEEEEecCCcchhheeeec
Confidence 68899999988 58999999999999999999876 4567788999999999988765 799999
Q ss_pred CCCcEEEEeCCC
Q psy11100 90 ETGLIIVWMLYK 101 (110)
Q Consensus 90 ~~~~i~~w~~~~ 101 (110)
.||.|.+|+..+
T Consensus 105 dDG~i~iw~~~~ 116 (362)
T KOG0294|consen 105 DDGHIIIWRVGS 116 (362)
T ss_pred CCCcEEEEEcCC
Confidence 999999998754
No 131
>KOG2445|consensus
Probab=99.01 E-value=3.8e-09 Score=67.17 Aligned_cols=88 Identities=19% Similarity=0.453 Sum_probs=68.9
Q ss_pred CCCCceEEEEEecC-CC---EEEEEecCCcEEEEEcCCCCCc---CCcc---cccccceeeeEEeeccCCCeEEEEEcCC
Q psy11100 12 PNNTKVNCLAWHQN-QG---WIAVGGDDGLLKVLKLDTGKES---TGQV---AAANVNLAMNQSLQGHSGKVRAIIWNEQ 81 (110)
Q Consensus 12 ~h~~~v~~~~~~p~-~~---~l~~~~~~~~v~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 81 (110)
+|+.+|.+++|.|. |+ .||+++.|| |+||.+...... +... ....-+++.+..+..|.++|..+.|+-.
T Consensus 221 d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt 299 (361)
T KOG2445|consen 221 DHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT 299 (361)
T ss_pred CCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee
Confidence 79999999999996 43 589999999 999999854311 0011 1223445556677889999999999999
Q ss_pred CCeEEEecCCCcEEEEeCC
Q psy11100 82 YEKLTSSDETGLIIVWMLY 100 (110)
Q Consensus 82 ~~~l~s~~~~~~i~~w~~~ 100 (110)
|..|+|.+.||.+++|...
T Consensus 300 GtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 300 GTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eeEEeecCCCceeeehhhh
Confidence 9999999999999999643
No 132
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=99.00 E-value=4.4e-09 Score=71.46 Aligned_cols=82 Identities=17% Similarity=0.229 Sum_probs=66.7
Q ss_pred cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100 10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 89 (110)
.++..+.+.+++++|+..+++.|+.||++.+||..... .......-....++|+|+|..++.++
T Consensus 255 sipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~----------------t~~~ka~~~P~~iaWHp~gai~~V~s 318 (545)
T PF11768_consen 255 SIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV----------------TLLAKAEFIPTLIAWHPDGAIFVVGS 318 (545)
T ss_pred EEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe----------------eeeeeecccceEEEEcCCCcEEEEEc
Confidence 34678899999999999999999999999999998764 12222234467899999999999999
Q ss_pred CCCcEEEEeCCCCCChhh
Q psy11100 90 ETGLIIVWMLYKCNDDDE 107 (110)
Q Consensus 90 ~~~~i~~w~~~~~~~~~~ 107 (110)
..|.+.+||..-+....+
T Consensus 319 ~qGelQ~FD~ALspi~~q 336 (545)
T PF11768_consen 319 EQGELQCFDMALSPIKMQ 336 (545)
T ss_pred CCceEEEEEeecCcccee
Confidence 999999999876655443
No 133
>KOG0278|consensus
Probab=99.00 E-value=2e-10 Score=71.28 Aligned_cols=84 Identities=23% Similarity=0.504 Sum_probs=72.7
Q ss_pred CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100 11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE 90 (110)
Q Consensus 11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 90 (110)
+.|.--|.+++|+.|.+.|++|+.+.-+++||+.... .+...+.+|.+.|..+.|-...+-++|+..
T Consensus 97 f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~-------------App~E~~ghtg~Ir~v~wc~eD~~iLSSad 163 (334)
T KOG0278|consen 97 FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK-------------APPKEISGHTGGIRTVLWCHEDKCILSSAD 163 (334)
T ss_pred hhhhheeeeEEecccchhhhccchHHHhhhhhccCCC-------------CCchhhcCCCCcceeEEEeccCceEEeecc
Confidence 3577789999999999999999999999999998765 134667889999999999888888888899
Q ss_pred CCcEEEEeCCCCCChhh
Q psy11100 91 TGLIIVWMLYKCNDDDE 107 (110)
Q Consensus 91 ~~~i~~w~~~~~~~~~~ 107 (110)
|++|++||.+++..+..
T Consensus 164 d~tVRLWD~rTgt~v~s 180 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQS 180 (334)
T ss_pred CCceEEEEeccCcEEEE
Confidence 99999999999876544
No 134
>KOG1063|consensus
Probab=99.00 E-value=2.4e-09 Score=73.85 Aligned_cols=83 Identities=11% Similarity=0.173 Sum_probs=69.0
Q ss_pred cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100 10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 89 (110)
..+|.-.|+.++|+|||++|++.+.|..+.+|....... ... .....+.|+.-|....|+|++..|++++
T Consensus 568 L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~---~e~-------~fa~~k~HtRIIWdcsW~pde~~FaTaS 637 (764)
T KOG1063|consen 568 LEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIK---DEF-------RFACLKAHTRIIWDCSWSPDEKYFATAS 637 (764)
T ss_pred ecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccc---hhh-------hhccccccceEEEEcccCcccceeEEec
Confidence 347989999999999999999999999999998865430 100 1123567888899999999999999999
Q ss_pred CCCcEEEEeCCCC
Q psy11100 90 ETGLIIVWMLYKC 102 (110)
Q Consensus 90 ~~~~i~~w~~~~~ 102 (110)
.|.++.+|...++
T Consensus 638 RDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 638 RDKKVKVWEEPDL 650 (764)
T ss_pred CCceEEEEeccCc
Confidence 9999999998877
No 135
>KOG0290|consensus
Probab=98.99 E-value=7.1e-09 Score=65.64 Aligned_cols=96 Identities=19% Similarity=0.328 Sum_probs=72.2
Q ss_pred eeccCCCCCceEEEEEecCCC-EEEEEecCCcEEEEEcCCCCCc-----CCc-----cc----cc---------------
Q psy11100 7 KKIAIPNNTKVNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKES-----TGQ-----VA----AA--------------- 56 (110)
Q Consensus 7 ~~~~~~h~~~v~~~~~~p~~~-~l~~~~~~~~v~~~~~~~~~~~-----~~~-----~~----~~--------------- 56 (110)
|.-.+.|..+|..++|..++. .+++.+.||+|++||++....+ ... ++ ..
T Consensus 189 kTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V 268 (364)
T KOG0290|consen 189 KTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKV 268 (364)
T ss_pred eeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceE
Confidence 566778999999999999754 6788899999999999876433 111 00 00
Q ss_pred -----ccceeeeEEeeccCCCeEEEEEcCCCC-eEEEecCCCcEEEEeCCCC
Q psy11100 57 -----NVNLAMNQSLQGHSGKVRAIIWNEQYE-KLTSSDETGLIIVWMLYKC 102 (110)
Q Consensus 57 -----~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~~~~i~~w~~~~~ 102 (110)
+-...+...+.+|.+.|+.++|.|... ++++++.|....+||+.+-
T Consensus 269 ~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 269 VILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred EEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 001112567788999999999999755 5999999999999998764
No 136
>KOG1274|consensus
Probab=98.99 E-value=6.1e-09 Score=73.69 Aligned_cols=82 Identities=24% Similarity=0.314 Sum_probs=73.4
Q ss_pred CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCC
Q psy11100 13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETG 92 (110)
Q Consensus 13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~ 92 (110)
.+-++.+++++-+|.+++.|+.|-.|++.+..... ....+.+|..+|.++.++|.+.+|++.+.||
T Consensus 95 ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s--------------~~~~lrgh~apVl~l~~~p~~~fLAvss~dG 160 (933)
T KOG1274|consen 95 FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS--------------QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDG 160 (933)
T ss_pred eeccceEEEEecCCcEEEeecCceeEEEEeccccc--------------hheeecccCCceeeeeEcCCCCEEEEEecCc
Confidence 35678899999999999999999999999988776 4578899999999999999999999999999
Q ss_pred cEEEEeCCCCCChhhh
Q psy11100 93 LIIVWMLYKCNDDDEW 108 (110)
Q Consensus 93 ~i~~w~~~~~~~~~~~ 108 (110)
.|++|++.++.....|
T Consensus 161 ~v~iw~~~~~~~~~tl 176 (933)
T KOG1274|consen 161 KVQIWDLQDGILSKTL 176 (933)
T ss_pred eEEEEEcccchhhhhc
Confidence 9999999988766554
No 137
>KOG0649|consensus
Probab=98.98 E-value=5e-09 Score=64.99 Aligned_cols=78 Identities=19% Similarity=0.398 Sum_probs=64.5
Q ss_pred ceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEE
Q psy11100 16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLII 95 (110)
Q Consensus 16 ~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~ 95 (110)
.|+++-..|...-++.++.|+.++-||+..++ .-+.+++|++.+.++.--.....+.+++.||+++
T Consensus 116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~--------------i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvR 181 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGR--------------IQREYRGHTDYVHSVVGRNANGQILSGAEDGTVR 181 (325)
T ss_pred ccceeEeccCCCcEEEecCCeEEEEEEecCCE--------------EEEEEcCCcceeeeeeecccCcceeecCCCccEE
Confidence 57888889876656566679999999999998 6688999999999998744444577999999999
Q ss_pred EEeCCCCCChhh
Q psy11100 96 VWMLYKCNDDDE 107 (110)
Q Consensus 96 ~w~~~~~~~~~~ 107 (110)
+||.++++.+..
T Consensus 182 vWd~kt~k~v~~ 193 (325)
T KOG0649|consen 182 VWDTKTQKHVSM 193 (325)
T ss_pred EEeccccceeEE
Confidence 999999887543
No 138
>KOG0289|consensus
Probab=98.98 E-value=1e-08 Score=67.78 Aligned_cols=83 Identities=12% Similarity=0.240 Sum_probs=69.2
Q ss_pred ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeecc--CCCeEEEEEcCCCCeEE
Q psy11100 9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH--SGKVRAIIWNEQYEKLT 86 (110)
Q Consensus 9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~ 86 (110)
+...|.++|+.+..+|.|.++++++.|+...+.|+..+. .+...... .-.+.+.+|+|||-.|.
T Consensus 298 ~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~--------------~lt~vs~~~s~v~~ts~~fHpDgLifg 363 (506)
T KOG0289|consen 298 SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGS--------------QLTVVSDETSDVEYTSAAFHPDGLIFG 363 (506)
T ss_pred ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCc--------------EEEEEeeccccceeEEeeEcCCceEEe
Confidence 445799999999999999999999999999999999886 23322222 23478999999999999
Q ss_pred EecCCCcEEEEeCCCCCCh
Q psy11100 87 SSDETGLIIVWMLYKCNDD 105 (110)
Q Consensus 87 s~~~~~~i~~w~~~~~~~~ 105 (110)
++..|+.+++||+.++...
T Consensus 364 tgt~d~~vkiwdlks~~~~ 382 (506)
T KOG0289|consen 364 TGTPDGVVKIWDLKSQTNV 382 (506)
T ss_pred ccCCCceEEEEEcCCcccc
Confidence 9999999999999887654
No 139
>KOG0641|consensus
Probab=98.98 E-value=1.6e-08 Score=62.27 Aligned_cols=90 Identities=16% Similarity=0.244 Sum_probs=64.9
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCc-CCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKES-TGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE 90 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 90 (110)
..+..|.+++|+|.|.+.+.|+...++++.-.....+. -..+.+...+......-+.|.+.|.|.+|||+|+++++++.
T Consensus 30 ~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsn 109 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSN 109 (350)
T ss_pred cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCC
Confidence 34567899999999999999999999888765443321 01111111212233444568899999999999999999999
Q ss_pred CCcEEEEeCCC
Q psy11100 91 TGLIIVWMLYK 101 (110)
Q Consensus 91 ~~~i~~w~~~~ 101 (110)
|.+|++..++.
T Consensus 110 dk~ik~l~fn~ 120 (350)
T KOG0641|consen 110 DKTIKVLPFNA 120 (350)
T ss_pred CceEEEEeccc
Confidence 99999886654
No 140
>KOG0641|consensus
Probab=98.98 E-value=9.9e-09 Score=63.22 Aligned_cols=73 Identities=19% Similarity=0.206 Sum_probs=68.3
Q ss_pred CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100 15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLI 94 (110)
Q Consensus 15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i 94 (110)
+.|.+++..|.|++|++|..|.+-.+||+..++ +++.+..|+..|.++.|||....+++++.|..|
T Consensus 232 savaav~vdpsgrll~sg~~dssc~lydirg~r--------------~iq~f~phsadir~vrfsp~a~yllt~syd~~i 297 (350)
T KOG0641|consen 232 SAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR--------------MIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKI 297 (350)
T ss_pred ceeEEEEECCCcceeeeccCCCceEEEEeeCCc--------------eeeeeCCCccceeEEEeCCCceEEEEecccceE
Confidence 578999999999999999999999999999988 889999999999999999999999999999999
Q ss_pred EEEeCCC
Q psy11100 95 IVWMLYK 101 (110)
Q Consensus 95 ~~w~~~~ 101 (110)
++-|+..
T Consensus 298 kltdlqg 304 (350)
T KOG0641|consen 298 KLTDLQG 304 (350)
T ss_pred EEeeccc
Confidence 9998763
No 141
>KOG0308|consensus
Probab=98.97 E-value=7.6e-09 Score=71.13 Aligned_cols=77 Identities=16% Similarity=0.158 Sum_probs=72.5
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 91 (110)
+|+..|.++..++||..+++++.||++++||+...+ +++++..|...|..+..+|+=.++.+|+.|
T Consensus 211 GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQr--------------Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd 276 (735)
T KOG0308|consen 211 GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQR--------------CLATYIVHKEGVWALQSSPSFTHVYSGGRD 276 (735)
T ss_pred ccccceEEEEEcCCCCeEeecCCCceEEeeeccccc--------------eeeeEEeccCceEEEeeCCCcceEEecCCC
Confidence 899999999999999999999999999999999887 788899999999999999998899999999
Q ss_pred CcEEEEeCCCC
Q psy11100 92 GLIIVWMLYKC 102 (110)
Q Consensus 92 ~~i~~w~~~~~ 102 (110)
+.|..-|+++-
T Consensus 277 ~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 277 GNIYRTDLRNP 287 (735)
T ss_pred CcEEecccCCc
Confidence 99999998874
No 142
>KOG0639|consensus
Probab=98.97 E-value=9.4e-10 Score=73.90 Aligned_cols=103 Identities=16% Similarity=0.192 Sum_probs=78.0
Q ss_pred eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcC-----Cccc----cc----------ccceee------
Q psy11100 8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKEST-----GQVA----AA----------NVNLAM------ 62 (110)
Q Consensus 8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~-----~~~~----~~----------~~~~~~------ 62 (110)
+-..+|+..+.|+.+++||..|.+|+.|++|+.||+..+.... ++.. -+ ..+.+.
T Consensus 545 rqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp 624 (705)
T KOG0639|consen 545 RQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP 624 (705)
T ss_pred ecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCc
Confidence 3445899999999999999999999999999999998775321 0000 00 011111
Q ss_pred -eEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCChhhhhC
Q psy11100 63 -NQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEWKR 110 (110)
Q Consensus 63 -~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~~~~~ 110 (110)
...+.-|...|.++.|++.|+++++.+.|..+..|...-|..+.+.|+
T Consensus 625 ~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE 673 (705)
T KOG0639|consen 625 EKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE 673 (705)
T ss_pred cceeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccc
Confidence 223444678899999999999999999999999999988888777654
No 143
>KOG1007|consensus
Probab=98.97 E-value=3.4e-09 Score=67.02 Aligned_cols=82 Identities=22% Similarity=0.274 Sum_probs=68.5
Q ss_pred ccCCCCCceEEEEEecCCC-EEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC-CCeEE
Q psy11100 9 IAIPNNTKVNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ-YEKLT 86 (110)
Q Consensus 9 ~~~~h~~~v~~~~~~p~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~ 86 (110)
|...|...|..+.|+|+.+ .|++++.||.|++||.+... .+.+.+.+|...|.+++|+|. .++++
T Consensus 209 I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk-------------~pv~el~~HsHWvW~VRfn~~hdqLiL 275 (370)
T KOG1007|consen 209 IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK-------------FPVQELPGHSHWVWAVRFNPEHDQLIL 275 (370)
T ss_pred hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC-------------ccccccCCCceEEEEEEecCccceEEE
Confidence 4457878899999999865 58999999999999999765 256888999999999999997 45588
Q ss_pred EecCCCcEEEEeCCCCC
Q psy11100 87 SSDETGLIIVWMLYKCN 103 (110)
Q Consensus 87 s~~~~~~i~~w~~~~~~ 103 (110)
+++.|..+.+|...+-.
T Consensus 276 s~~SDs~V~Lsca~svS 292 (370)
T KOG1007|consen 276 SGGSDSAVNLSCASSVS 292 (370)
T ss_pred ecCCCceeEEEeccccc
Confidence 99999999999865443
No 144
>KOG1963|consensus
Probab=98.97 E-value=5.1e-09 Score=73.49 Aligned_cols=86 Identities=20% Similarity=0.401 Sum_probs=73.2
Q ss_pred eeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCC-CCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeE
Q psy11100 7 KKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTG-KESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKL 85 (110)
Q Consensus 7 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 85 (110)
+++...|+-.++|.++||++++++++..||.|.+|.-... .+ . ...+.++-|...|.++.|+++|..+
T Consensus 198 ~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~---~--------~t~t~lHWH~~~V~~L~fS~~G~~L 266 (792)
T KOG1963|consen 198 RDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDD---S--------ETCTLLHWHHDEVNSLSFSSDGAYL 266 (792)
T ss_pred chhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccc---c--------ccceEEEecccccceeEEecCCceE
Confidence 3455678878999999999999999999999999987652 10 1 1356788899999999999999999
Q ss_pred EEecCCCcEEEEeCCCCC
Q psy11100 86 TSSDETGLIIVWMLYKCN 103 (110)
Q Consensus 86 ~s~~~~~~i~~w~~~~~~ 103 (110)
.||+..+-+-+|.+.++.
T Consensus 267 lSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 267 LSGGREGVLVLWQLETGK 284 (792)
T ss_pred eecccceEEEEEeecCCC
Confidence 999999999999999887
No 145
>KOG1407|consensus
Probab=98.96 E-value=1.4e-09 Score=67.73 Aligned_cols=87 Identities=17% Similarity=0.299 Sum_probs=70.8
Q ss_pred ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC-eEEE
Q psy11100 9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE-KLTS 87 (110)
Q Consensus 9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s 87 (110)
-..+|.+++..++|+-+|..+++|+.|+++.+|++...+. .......+|++.|-.++|.|... .+++
T Consensus 15 ~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~------------~~~~~~~gh~~svdql~w~~~~~d~~at 82 (313)
T KOG1407|consen 15 ELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF------------RKELVYRGHTDSVDQLCWDPKHPDLFAT 82 (313)
T ss_pred HhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh------------hhhhcccCCCcchhhheeCCCCCcceEE
Confidence 3457899999999999999999999999999999987640 01223456888888899988654 5999
Q ss_pred ecCCCcEEEEeCCCCCChhh
Q psy11100 88 SDETGLIIVWMLYKCNDDDE 107 (110)
Q Consensus 88 ~~~~~~i~~w~~~~~~~~~~ 107 (110)
++.|..|++||++.++...+
T Consensus 83 as~dk~ir~wd~r~~k~~~~ 102 (313)
T KOG1407|consen 83 ASGDKTIRIWDIRSGKCTAR 102 (313)
T ss_pred ecCCceEEEEEeccCcEEEE
Confidence 99999999999998876544
No 146
>KOG0300|consensus
Probab=98.95 E-value=4.7e-09 Score=67.32 Aligned_cols=82 Identities=16% Similarity=0.318 Sum_probs=70.9
Q ss_pred eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100 8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS 87 (110)
Q Consensus 8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 87 (110)
.+..+|...++-++-+|..+++++++.|-+.++||+.... +....+++|...|.+..|+.+.. +++
T Consensus 308 ~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI-------------~sV~VFQGHtdtVTS~vF~~dd~-vVS 373 (481)
T KOG0300|consen 308 NILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAI-------------QSVAVFQGHTDTVTSVVFNTDDR-VVS 373 (481)
T ss_pred ccccCcchhccccccCCcceEEEEeccCceeEeccchhhc-------------ceeeeecccccceeEEEEecCCc-eee
Confidence 4556899999999999999999999999999999999654 35678899999999999988654 779
Q ss_pred ecCCCcEEEEeCCCCC
Q psy11100 88 SDETGLIIVWMLYKCN 103 (110)
Q Consensus 88 ~~~~~~i~~w~~~~~~ 103 (110)
++.|.+|++||+++-+
T Consensus 374 gSDDrTvKvWdLrNMR 389 (481)
T KOG0300|consen 374 GSDDRTVKVWDLRNMR 389 (481)
T ss_pred cCCCceEEEeeecccc
Confidence 9999999999998754
No 147
>KOG2445|consensus
Probab=98.95 E-value=2.2e-08 Score=63.75 Aligned_cols=83 Identities=11% Similarity=0.225 Sum_probs=70.0
Q ss_pred eeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcC--CCCe
Q psy11100 7 KKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNE--QYEK 84 (110)
Q Consensus 7 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~ 84 (110)
+.|-.+|..-|.++.|.+-|+.+++++.|..++|||..... ..+.+....+.|.+.|..+.|.+ -|+.
T Consensus 6 ~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s----------~~W~~Ts~Wrah~~Si~rV~WAhPEfGqv 75 (361)
T KOG2445|consen 6 APIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS----------GTWSCTSSWRAHDGSIWRVVWAHPEFGQV 75 (361)
T ss_pred cccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCC----------CceEEeeeEEecCCcEEEEEecCccccce
Confidence 34566899999999999999999999999999999975443 24545667788999999999954 4889
Q ss_pred EEEecCCCcEEEEeC
Q psy11100 85 LTSSDETGLIIVWML 99 (110)
Q Consensus 85 l~s~~~~~~i~~w~~ 99 (110)
+++++.|+++.+|.-
T Consensus 76 vA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 76 VATCSYDRTVSIWEE 90 (361)
T ss_pred EEEEecCCceeeeee
Confidence 999999999999974
No 148
>KOG0642|consensus
Probab=98.92 E-value=4.1e-09 Score=71.20 Aligned_cols=84 Identities=23% Similarity=0.355 Sum_probs=70.1
Q ss_pred CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100 11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE 90 (110)
Q Consensus 11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 90 (110)
..|...+..+.|+|-...+++++.++.+++|++.... +.......++.++.+|.++|.|++.++.++.+.+++.
T Consensus 291 ~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~------~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~ 364 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAK------KSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI 364 (577)
T ss_pred ecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccC------CccccceeeeEEEecccCceEEEEecCCceEEEeecc
Confidence 3688889999999988899999999999999994322 1111223467899999999999999999999999999
Q ss_pred CCcEEEEeCC
Q psy11100 91 TGLIIVWMLY 100 (110)
Q Consensus 91 ~~~i~~w~~~ 100 (110)
||+|+.|++.
T Consensus 365 Dg~I~~w~~p 374 (577)
T KOG0642|consen 365 DGTIRCWNLP 374 (577)
T ss_pred CceeeeeccC
Confidence 9999999765
No 149
>KOG0301|consensus
Probab=98.91 E-value=4.6e-09 Score=72.50 Aligned_cols=80 Identities=21% Similarity=0.227 Sum_probs=61.4
Q ss_pred cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100 10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 89 (110)
..+|++.|.+++.-|++ .+++|+.|..+++|.-.. .+.++.+|.+.|+.+++-+++ .|+|++
T Consensus 136 l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~----------------~l~tf~gHtD~VRgL~vl~~~-~flScs 197 (745)
T KOG0301|consen 136 LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGT----------------LLKTFSGHTDCVRGLAVLDDS-HFLSCS 197 (745)
T ss_pred cCCcchheeeeeecCCC-cEEeccCcceeeeccCCc----------------hhhhhccchhheeeeEEecCC-CeEeec
Confidence 44777888877777766 567777788888886643 357899999999999987754 477999
Q ss_pred CCCcEEEEeCCCCCChhhh
Q psy11100 90 ETGLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 90 ~~~~i~~w~~~~~~~~~~~ 108 (110)
.||.|+.|++ +|..+.++
T Consensus 198 NDg~Ir~w~~-~ge~l~~~ 215 (745)
T KOG0301|consen 198 NDGSIRLWDL-DGEVLLEM 215 (745)
T ss_pred CCceEEEEec-cCceeeee
Confidence 9999999999 55555443
No 150
>KOG1538|consensus
Probab=98.90 E-value=8.3e-09 Score=71.64 Aligned_cols=70 Identities=19% Similarity=0.363 Sum_probs=61.9
Q ss_pred ceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEE
Q psy11100 16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLII 95 (110)
Q Consensus 16 ~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~ 95 (110)
-|..++|-|||.-++.+. +..+.+||...+. .++++++|.+.|++++|+.+|+.++||+.|..+.
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~--------------llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI 78 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGT--------------LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVI 78 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcc--------------cccccccccceEEEEEEccCCceeccCCCceeEE
Confidence 788999999998765554 3578999999987 6789999999999999999999999999999999
Q ss_pred EEeCC
Q psy11100 96 VWMLY 100 (110)
Q Consensus 96 ~w~~~ 100 (110)
+|+..
T Consensus 79 ~W~~k 83 (1081)
T KOG1538|consen 79 IWTSK 83 (1081)
T ss_pred Eeccc
Confidence 99854
No 151
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.90 E-value=9.7e-09 Score=46.40 Aligned_cols=35 Identities=23% Similarity=0.583 Sum_probs=32.3
Q ss_pred eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEE
Q psy11100 8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLK 42 (110)
Q Consensus 8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~ 42 (110)
....+|.+.|.+++|+|++..+++++.|+.+++||
T Consensus 5 ~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 5 RTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 44568999999999999999999999999999997
No 152
>KOG1009|consensus
Probab=98.88 E-value=2.4e-08 Score=65.38 Aligned_cols=86 Identities=17% Similarity=0.327 Sum_probs=68.8
Q ss_pred cCCCCCceEEEEEecCCC-EEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100 10 AIPNNTKVNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS 88 (110)
Q Consensus 10 ~~~h~~~v~~~~~~p~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 88 (110)
......++..+.|++++. .+++|+.|..+++|.+...... .....+.....+..|...|+.+.|+|+|++++|+
T Consensus 9 ~wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~-----~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg 83 (434)
T KOG1009|consen 9 SWHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPG-----GGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASG 83 (434)
T ss_pred EecCCCceEEEEeccCcccceecccCccceeeeeeeecCCC-----CCceeEEEeecccCCcceeEEEEEcCCcCeeeec
Confidence 333457899999999765 8999999999999998865411 1112334566778899999999999999999999
Q ss_pred cCCCcEEEEeCC
Q psy11100 89 DETGLIIVWMLY 100 (110)
Q Consensus 89 ~~~~~i~~w~~~ 100 (110)
+.++.+.+|...
T Consensus 84 ~D~g~v~lWk~~ 95 (434)
T KOG1009|consen 84 GDGGEVFLWKQG 95 (434)
T ss_pred CCCceEEEEEec
Confidence 999999999776
No 153
>KOG0268|consensus
Probab=98.88 E-value=2.7e-09 Score=69.10 Aligned_cols=74 Identities=24% Similarity=0.404 Sum_probs=65.8
Q ss_pred CCCCCceEEEEEecCC-CEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100 11 IPNNTKVNCLAWHQNQ-GWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 11 ~~h~~~v~~~~~~p~~-~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 89 (110)
.+|..+|.|++=+|.. ..+++|+.||.|++||+.... +..++..|.+.|..+++.. ..+.+++
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~--------------~~~~f~AH~G~V~Gi~v~~--~~~~tvg 126 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE--------------CIRTFKAHEGLVRGICVTQ--TSFFTVG 126 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhh--------------hhheeecccCceeeEEecc--cceEEec
Confidence 5899999999999976 679999999999999999876 6788999999999999866 6688999
Q ss_pred CCCcEEEEeCC
Q psy11100 90 ETGLIIVWMLY 100 (110)
Q Consensus 90 ~~~~i~~w~~~ 100 (110)
.|.+|+.|-+.
T Consensus 127 dDKtvK~wk~~ 137 (433)
T KOG0268|consen 127 DDKTVKQWKID 137 (433)
T ss_pred CCcceeeeecc
Confidence 99999999743
No 154
>KOG1523|consensus
Probab=98.87 E-value=9.1e-09 Score=65.71 Aligned_cols=99 Identities=17% Similarity=0.246 Sum_probs=75.0
Q ss_pred eeeeeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccc----c-ccceeeeEEeeccCCCeEEEEE
Q psy11100 4 YLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAA----A-NVNLAMNQSLQGHSGKVRAIIW 78 (110)
Q Consensus 4 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~v~~~~~ 78 (110)
+++|.|..++.+.|.++.|+|++-++++|+.|+..++|...-....+++.++ . +.+. .+..+....+.+..+.|
T Consensus 136 WVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~-lm~E~~~~ggwvh~v~f 214 (361)
T KOG1523|consen 136 WVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQ-LMSEASSSGGWVHGVLF 214 (361)
T ss_pred ehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHH-HHHhhccCCCceeeeEe
Confidence 5789999999999999999999999999999999999987654322221111 1 1111 12233345678999999
Q ss_pred cCCCCeEEEecCCCcEEEEeCCCCC
Q psy11100 79 NEQYEKLTSSDETGLIIVWMLYKCN 103 (110)
Q Consensus 79 s~~~~~l~s~~~~~~i~~w~~~~~~ 103 (110)
+|.|..|+-.++|+++.+-|....+
T Consensus 215 s~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 215 SPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CCCCCEeeEecCCCceEEeecCCCc
Confidence 9999999999999999998876553
No 155
>KOG0321|consensus
Probab=98.87 E-value=6.8e-09 Score=71.23 Aligned_cols=80 Identities=14% Similarity=0.313 Sum_probs=68.9
Q ss_pred cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeE--EeeccCCCeEEEEEcCCCCe-EE
Q psy11100 10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQ--SLQGHSGKVRAIIWNEQYEK-LT 86 (110)
Q Consensus 10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~~~~~-l~ 86 (110)
...|.+.|.++.|-|....|++++.|.++++||+.... ... .+.+|...|.+++|.|.... |+
T Consensus 96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~--------------l~G~~~~~GH~~SvkS~cf~~~n~~vF~ 161 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR--------------LVGGRLNLGHTGSVKSECFMPTNPAVFC 161 (720)
T ss_pred cccccceeEeeccCCCceeEEEccCCceeeeeeeccce--------------eecceeecccccccchhhhccCCCccee
Confidence 34699999999999976789999999999999999875 333 37789999999999998776 99
Q ss_pred EecCCCcEEEEeCCCCC
Q psy11100 87 SSDETGLIIVWMLYKCN 103 (110)
Q Consensus 87 s~~~~~~i~~w~~~~~~ 103 (110)
+|+.||.+.+||.+-..
T Consensus 162 tGgRDg~illWD~R~n~ 178 (720)
T KOG0321|consen 162 TGGRDGEILLWDCRCNG 178 (720)
T ss_pred eccCCCcEEEEEEeccc
Confidence 99999999999987544
No 156
>KOG0305|consensus
Probab=98.87 E-value=2.2e-08 Score=67.81 Aligned_cols=79 Identities=23% Similarity=0.451 Sum_probs=68.9
Q ss_pred CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeec-cCCCeEEEEEcCCCCeEEEecCC
Q psy11100 13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQG-HSGKVRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~~ 91 (110)
+...|+++.|+++|..|+.|..+|.|.+||..... ....+.+ |...|.+++|+ +..+.++..+
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k--------------~~~~~~~~h~~rvg~laW~--~~~lssGsr~ 279 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK--------------KTRTLRGSHASRVGSLAWN--SSVLSSGSRD 279 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhcc--------------ccccccCCcCceeEEEecc--CceEEEecCC
Confidence 36889999999999999999999999999998776 4456666 88999999997 6678999999
Q ss_pred CcEEEEeCCCCCChhh
Q psy11100 92 GLIIVWMLYKCNDDDE 107 (110)
Q Consensus 92 ~~i~~w~~~~~~~~~~ 107 (110)
+.|..+|++..+...+
T Consensus 280 ~~I~~~dvR~~~~~~~ 295 (484)
T KOG0305|consen 280 GKILNHDVRISQHVVS 295 (484)
T ss_pred CcEEEEEEecchhhhh
Confidence 9999999998776655
No 157
>KOG1063|consensus
Probab=98.86 E-value=1.9e-08 Score=69.65 Aligned_cols=76 Identities=17% Similarity=0.183 Sum_probs=66.6
Q ss_pred CCCCceEEEEEecCCCEEEEEecCC-----cEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEE
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDG-----LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT 86 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 86 (110)
||...|.+++.+|+|+++++++... .+++|+...-. ....+.+|+-.|..++|||+|++|+
T Consensus 523 GHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~--------------~~~~L~~HsLTVT~l~FSpdg~~LL 588 (764)
T KOG1063|consen 523 GHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWL--------------QVQELEGHSLTVTRLAFSPDGRYLL 588 (764)
T ss_pred cCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchh--------------hhheecccceEEEEEEECCCCcEEE
Confidence 7989999999999999999998764 47889887765 3456889999999999999999999
Q ss_pred EecCCCcEEEEeCCC
Q psy11100 87 SSDETGLIIVWMLYK 101 (110)
Q Consensus 87 s~~~~~~i~~w~~~~ 101 (110)
+++.|.++.+|+...
T Consensus 589 svsRDRt~sl~~~~~ 603 (764)
T KOG1063|consen 589 SVSRDRTVSLYEVQE 603 (764)
T ss_pred EeecCceEEeeeeec
Confidence 999999999998744
No 158
>KOG4328|consensus
Probab=98.85 E-value=1.7e-08 Score=66.95 Aligned_cols=79 Identities=15% Similarity=0.094 Sum_probs=64.2
Q ss_pred CCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100 12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE 90 (110)
Q Consensus 12 ~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 90 (110)
-|.-+|..++++|. ..++++++.|++++|||++....... +......|...|++..|||.+-.+++.+.
T Consensus 320 lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s----------p~lst~~HrrsV~sAyFSPs~gtl~TT~~ 389 (498)
T KOG4328|consen 320 LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS----------PFLSTLPHRRSVNSAYFSPSGGTLLTTCQ 389 (498)
T ss_pred hhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC----------cceecccccceeeeeEEcCCCCceEeecc
Confidence 36679999999996 56799999999999999997651100 12334568899999999999888999999
Q ss_pred CCcEEEEeCC
Q psy11100 91 TGLIIVWMLY 100 (110)
Q Consensus 91 ~~~i~~w~~~ 100 (110)
|..|++||..
T Consensus 390 D~~IRv~dss 399 (498)
T KOG4328|consen 390 DNEIRVFDSS 399 (498)
T ss_pred CCceEEeecc
Confidence 9999999983
No 159
>KOG2394|consensus
Probab=98.85 E-value=2e-08 Score=68.00 Aligned_cols=53 Identities=23% Similarity=0.517 Sum_probs=47.3
Q ss_pred CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEc
Q psy11100 13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWN 79 (110)
Q Consensus 13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 79 (110)
.-+...|++|+|||+++++|+.|--|.||.+...+ ....-++|...|+.++|.
T Consensus 331 YFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erR--------------VVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 331 YFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERR--------------VVARGQGHKSWVSVVAFD 383 (636)
T ss_pred hccceEEEEEcCCccEEEecCCcceEEEEEeccce--------------EEEeccccccceeeEeec
Confidence 34789999999999999999999999999999887 666778899999999887
No 160
>KOG2919|consensus
Probab=98.83 E-value=1.8e-08 Score=64.71 Aligned_cols=79 Identities=20% Similarity=0.293 Sum_probs=63.1
Q ss_pred CCCCceEEEEEecCCCEEEEEec-CCcEEEEEcCCCCCcCCcccccccceeeeEEeecc---CCCeEEEEEcCCCCeEEE
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGD-DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH---SGKVRAIIWNEQYEKLTS 87 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~s 87 (110)
+|.+.|+.+.|+++|+.+.+|.. +-.+-.||++...+ ++..+..| +++-.-+...|++++|++
T Consensus 248 gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~-------------pv~~L~rhv~~TNQRI~FDld~~~~~Las 314 (406)
T KOG2919|consen 248 GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD-------------PVYALERHVGDTNQRILFDLDPKGEILAS 314 (406)
T ss_pred ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc-------------hhhhhhhhccCccceEEEecCCCCceeec
Confidence 89999999999999999988865 56788999997651 33334444 344446677899999999
Q ss_pred ecCCCcEEEEeCCC-CC
Q psy11100 88 SDETGLIIVWMLYK-CN 103 (110)
Q Consensus 88 ~~~~~~i~~w~~~~-~~ 103 (110)
++.+|.|++||+.+ |.
T Consensus 315 G~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 315 GDTDGSVRVWDLKDLGN 331 (406)
T ss_pred cCCCccEEEEecCCCCC
Confidence 99999999999987 54
No 161
>KOG2048|consensus
Probab=98.80 E-value=1.3e-07 Score=65.41 Aligned_cols=83 Identities=22% Similarity=0.399 Sum_probs=67.1
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 91 (110)
...+.+.+++.+|.+..++.|+.||.+..++..... +.....+...++.+.++.|+|++..+++|+.|
T Consensus 108 ~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~------------I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~D 175 (691)
T KOG2048|consen 108 SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDK------------ITYKRSLMRQKSRVLSLSWNPTGTKIAGGSID 175 (691)
T ss_pred CCCcceeEEEeCCccceEEeecCCceEEEEecCCce------------EEEEeecccccceEEEEEecCCccEEEecccC
Confidence 345789999999999999999999977777766553 11233344457899999999999999999999
Q ss_pred CcEEEEeCCCCCChh
Q psy11100 92 GLIIVWMLYKCNDDD 106 (110)
Q Consensus 92 ~~i~~w~~~~~~~~~ 106 (110)
|.|++||..++.-+.
T Consensus 176 g~Iriwd~~~~~t~~ 190 (691)
T KOG2048|consen 176 GVIRIWDVKSGQTLH 190 (691)
T ss_pred ceEEEEEcCCCceEE
Confidence 999999999887544
No 162
>KOG1036|consensus
Probab=98.80 E-value=9.7e-08 Score=60.70 Aligned_cols=78 Identities=21% Similarity=0.307 Sum_probs=67.5
Q ss_pred eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100 8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS 87 (110)
Q Consensus 8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 87 (110)
+....|.+++.+++|.++ ..+++|+.||.|+++|+..+. ...+..|...+.++..++....+++
T Consensus 48 ~~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~---------------~~~igth~~~i~ci~~~~~~~~vIs 111 (323)
T KOG1036|consen 48 KLKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGN---------------EDQIGTHDEGIRCIEYSYEVGCVIS 111 (323)
T ss_pred hhheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCc---------------ceeeccCCCceEEEEeeccCCeEEE
Confidence 344578999999999884 457899999999999999876 3567889999999999998888999
Q ss_pred ecCCCcEEEEeCCC
Q psy11100 88 SDETGLIIVWMLYK 101 (110)
Q Consensus 88 ~~~~~~i~~w~~~~ 101 (110)
++=|++|++||.+.
T Consensus 112 gsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 112 GSWDKTIKFWDPRN 125 (323)
T ss_pred cccCccEEEEeccc
Confidence 99999999999985
No 163
>KOG0307|consensus
Probab=98.80 E-value=6e-09 Score=74.95 Aligned_cols=83 Identities=20% Similarity=0.351 Sum_probs=67.0
Q ss_pred CCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEe--eccCCCeEEEEEcCCCCe-EEE
Q psy11100 12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL--QGHSGKVRAIIWNEQYEK-LTS 87 (110)
Q Consensus 12 ~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~-l~s 87 (110)
.|++.|..+.|++. +++|++|+.+|.|.|||+.... .-+.. ....+.|.+++||..-++ |++
T Consensus 114 ~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~--------------tP~~~~~~~~~~eI~~lsWNrkvqhILAS 179 (1049)
T KOG0307|consen 114 KHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPE--------------TPFTPGSQAPPSEIKCLSWNRKVSHILAS 179 (1049)
T ss_pred ccCCceeeeeccccCCceeeccCCCCcEEEeccCCcC--------------CCCCCCCCCCcccceEeccchhhhHHhhc
Confidence 59999999999997 5599999999999999999854 11122 123578999999987655 889
Q ss_pred ecCCCcEEEEeCCCCCChhhh
Q psy11100 88 SDETGLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 88 ~~~~~~i~~w~~~~~~~~~~~ 108 (110)
++.+|...+||++..+-+.++
T Consensus 180 ~s~sg~~~iWDlr~~~pii~l 200 (1049)
T KOG0307|consen 180 GSPSGRAVIWDLRKKKPIIKL 200 (1049)
T ss_pred cCCCCCceeccccCCCccccc
Confidence 999999999999988766554
No 164
>KOG0288|consensus
Probab=98.78 E-value=4e-09 Score=69.12 Aligned_cols=81 Identities=17% Similarity=0.334 Sum_probs=70.7
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 91 (110)
+..+.++.+.|.+++..+++++.|+.+++|++.... ...++.+|++.|.++.|......+++++.|
T Consensus 217 Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r--------------~~~TLsGHtdkVt~ak~~~~~~~vVsgs~D 282 (459)
T KOG0288|consen 217 GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR--------------LRHTLSGHTDKVTAAKFKLSHSRVVSGSAD 282 (459)
T ss_pred ccCCCcceeeecCCCceEEeecCCCceeeeeccchh--------------hhhhhcccccceeeehhhccccceeecccc
Confidence 455789999999999999999999999999999887 678899999999999998766669999999
Q ss_pred CcEEEEeCCCCCChh
Q psy11100 92 GLIIVWMLYKCNDDD 106 (110)
Q Consensus 92 ~~i~~w~~~~~~~~~ 106 (110)
.+++.||+.+..+..
T Consensus 283 RtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 283 RTIKLWDLQKAYCSK 297 (459)
T ss_pred chhhhhhhhhhheec
Confidence 999999998865543
No 165
>KOG0290|consensus
Probab=98.77 E-value=8.8e-08 Score=60.81 Aligned_cols=81 Identities=15% Similarity=0.257 Sum_probs=65.9
Q ss_pred CCCCCceEEEEEec-CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEe
Q psy11100 11 IPNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSS 88 (110)
Q Consensus 11 ~~h~~~v~~~~~~p-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~ 88 (110)
..+.+++++..|+. +.+++.+++.|-+-.+||+..+. .. ...+++=.|..+|..++|...+.- |+++
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~---~~--------~vkTQLIAHDKEV~DIaf~~~s~~~FASv 215 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV---SG--------TVKTQLIAHDKEVYDIAFLKGSRDVFASV 215 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeecc---cc--------ceeeEEEecCcceeEEEeccCccceEEEe
Confidence 35668899999987 57789999999999999999863 00 034566689999999999986654 9999
Q ss_pred cCCCcEEEEeCCCC
Q psy11100 89 DETGLIIVWMLYKC 102 (110)
Q Consensus 89 ~~~~~i~~w~~~~~ 102 (110)
+.||+++++|++.-
T Consensus 216 gaDGSvRmFDLR~l 229 (364)
T KOG0290|consen 216 GADGSVRMFDLRSL 229 (364)
T ss_pred cCCCcEEEEEeccc
Confidence 99999999999853
No 166
>KOG2106|consensus
Probab=98.77 E-value=1.8e-07 Score=63.18 Aligned_cols=79 Identities=14% Similarity=0.354 Sum_probs=63.8
Q ss_pred CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCc
Q psy11100 14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGL 93 (110)
Q Consensus 14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~ 93 (110)
++++++++|+|+|.++|.|+.|+.+.+|.+.... .. ....-+.+.+.+..+.||+|++++.+-+.|..
T Consensus 447 ~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g----------~~--y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~e 514 (626)
T KOG2106|consen 447 NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG----------RK--YSRVGKCSGSPITHLDWSSDSQFLVSNSGDYE 514 (626)
T ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC----------cE--EEEeeeecCceeEEeeecCCCceEEeccCceE
Confidence 6889999999999999999999999999988654 01 12222234488999999999999999999999
Q ss_pred EEEEeCCCCCC
Q psy11100 94 IIVWMLYKCND 104 (110)
Q Consensus 94 i~~w~~~~~~~ 104 (110)
|.+|.....+.
T Consensus 515 iLyW~~~~~~~ 525 (626)
T KOG2106|consen 515 ILYWKPSECKQ 525 (626)
T ss_pred EEEEccccCcc
Confidence 99996554443
No 167
>KOG2048|consensus
Probab=98.76 E-value=1.7e-07 Score=64.77 Aligned_cols=81 Identities=19% Similarity=0.354 Sum_probs=61.3
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeE-------Eeec-cCCCeEEEEEcCCCC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQ-------SLQG-HSGKVRAIIWNEQYE 83 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~v~~~~~s~~~~ 83 (110)
--++++.+++|+|++..++.|+.||.+++||...+. .+. .+.. ..--|.++.+=.+ .
T Consensus 152 rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~--------------t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~ 216 (691)
T KOG2048|consen 152 RQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQ--------------TLHIITMQLDRLSKREPTIVWSVLFLRD-S 216 (691)
T ss_pred cccceEEEEEecCCccEEEecccCceEEEEEcCCCc--------------eEEEeeecccccccCCceEEEEEEEeec-C
Confidence 346899999999999999999999999999999876 222 1111 1223556665543 4
Q ss_pred eEEEecCCCcEEEEeCCCCCChhh
Q psy11100 84 KLTSSDETGLIIVWMLYKCNDDDE 107 (110)
Q Consensus 84 ~l~s~~~~~~i~~w~~~~~~~~~~ 107 (110)
.+++++..|+|++||...+..+.-
T Consensus 217 tI~sgDS~G~V~FWd~~~gTLiqS 240 (691)
T KOG2048|consen 217 TIASGDSAGTVTFWDSIFGTLIQS 240 (691)
T ss_pred cEEEecCCceEEEEcccCcchhhh
Confidence 588999999999999998876654
No 168
>KOG1408|consensus
Probab=98.76 E-value=2.8e-08 Score=69.54 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=65.7
Q ss_pred CCCCceEEEEEecCCCEEEEEe--cCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGG--DDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 89 (110)
.+.-++++++|+++|+++++|- ....+++|++.... ....+..|.-.|.+++|+|.+.++++.+
T Consensus 76 ssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~--------------vVAEfvdHKY~vtcvaFsp~~kyvvSVG 141 (1080)
T KOG1408|consen 76 SSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHG--------------VVAEFVDHKYNVTCVAFSPGNKYVVSVG 141 (1080)
T ss_pred ccCcceeEEEEcCCCcEEEecccCCCccceeeeecccc--------------chhhhhhccccceeeeecCCCcEEEeec
Confidence 4556899999999999999986 45679999998765 4567888999999999999999999887
Q ss_pred --CCCcEEEEeCCCCC
Q psy11100 90 --ETGLIIVWMLYKCN 103 (110)
Q Consensus 90 --~~~~i~~w~~~~~~ 103 (110)
+|..|.+||.+.+.
T Consensus 142 sQHDMIVnv~dWr~N~ 157 (1080)
T KOG1408|consen 142 SQHDMIVNVNDWRVNS 157 (1080)
T ss_pred cccceEEEhhhhhhcc
Confidence 57789999877554
No 169
>KOG0299|consensus
Probab=98.76 E-value=1e-07 Score=63.35 Aligned_cols=96 Identities=11% Similarity=0.089 Sum_probs=73.2
Q ss_pred CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCc-CCcccc--cc-cceeeeEEe-eccCCCeEEEEEcCCCCeE
Q psy11100 11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKES-TGQVAA--AN-VNLAMNQSL-QGHSGKVRAIIWNEQYEKL 85 (110)
Q Consensus 11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~-~~~~~~--~~-~~~~~~~~~-~~~~~~v~~~~~s~~~~~l 85 (110)
..|.-.+.+++++|+..+..+++.++++.-|++..+.+. ..-++. .. +.. ....- ..|...+.+++.|+||.+|
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~-~~k~~r~~h~keil~~avS~Dgkyl 217 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGN-PLKESRKGHVKEILTLAVSSDGKYL 217 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccC-CCCcccccccceeEEEEEcCCCcEE
Confidence 378899999999999999999999999999999887632 000000 01 111 11112 3788999999999999999
Q ss_pred EEecCCCcEEEEeCCCCCChhh
Q psy11100 86 TSSDETGLIIVWMLYKCNDDDE 107 (110)
Q Consensus 86 ~s~~~~~~i~~w~~~~~~~~~~ 107 (110)
++++.|..|.+|+..+...+..
T Consensus 218 atgg~d~~v~Iw~~~t~ehv~~ 239 (479)
T KOG0299|consen 218 ATGGRDRHVQIWDCDTLEHVKV 239 (479)
T ss_pred EecCCCceEEEecCcccchhhc
Confidence 9999999999999998776543
No 170
>KOG0301|consensus
Probab=98.75 E-value=1.3e-07 Score=65.60 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=65.4
Q ss_pred cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100 10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 89 (110)
..+|+..|..+++-+++. +++++.||.++.|++... .+....+|++.|+++...+.+..+++++
T Consensus 175 f~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~ge---------------~l~~~~ghtn~vYsis~~~~~~~Ivs~g 238 (745)
T KOG0301|consen 175 FSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDGE---------------VLLEMHGHTNFVYSISMALSDGLIVSTG 238 (745)
T ss_pred hccchhheeeeEEecCCC-eEeecCCceEEEEeccCc---------------eeeeeeccceEEEEEEecCCCCeEEEec
Confidence 347999999999998766 557788999999999654 5778889999999999889999999999
Q ss_pred CCCcEEEEeCC
Q psy11100 90 ETGLIIVWMLY 100 (110)
Q Consensus 90 ~~~~i~~w~~~ 100 (110)
.|+++++|+..
T Consensus 239 EDrtlriW~~~ 249 (745)
T KOG0301|consen 239 EDRTLRIWKKD 249 (745)
T ss_pred CCceEEEeecC
Confidence 99999999865
No 171
>KOG1408|consensus
Probab=98.75 E-value=5.9e-08 Score=67.96 Aligned_cols=79 Identities=19% Similarity=0.255 Sum_probs=71.5
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 91 (110)
+|.+....+...|.|.++++.+.|.++.++|..++. +..+-.+|...|..+.|.+|-++|++++.|
T Consensus 639 ~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgE--------------cvA~m~GHsE~VTG~kF~nDCkHlISvsgD 704 (1080)
T KOG1408|consen 639 DHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGE--------------CVAQMTGHSEAVTGVKFLNDCKHLISVSGD 704 (1080)
T ss_pred cCCCceEEEEECCCccEEEEeecCCceEEEEeccch--------------hhhhhcCcchheeeeeecccchhheeecCC
Confidence 566788889999999999999999999999999987 667778999999999999999999999999
Q ss_pred CcEEEEeCCCCCC
Q psy11100 92 GLIIVWMLYKCND 104 (110)
Q Consensus 92 ~~i~~w~~~~~~~ 104 (110)
|.|.+|.+.....
T Consensus 705 gCIFvW~lp~~mi 717 (1080)
T KOG1408|consen 705 GCIFVWKLPLTMI 717 (1080)
T ss_pred ceEEEEECchhHh
Confidence 9999999876443
No 172
>KOG0300|consensus
Probab=98.74 E-value=3.5e-08 Score=63.44 Aligned_cols=79 Identities=15% Similarity=0.208 Sum_probs=71.2
Q ss_pred eeeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeE
Q psy11100 6 SKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKL 85 (110)
Q Consensus 6 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 85 (110)
..+.+.+|...|..++.......+++++.|.+-++|.+.++. ++.++.+|.+.|++++|++.+.++
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~--------------CL~~Y~GH~GSVNsikfh~s~~L~ 205 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA--------------CLATYTGHTGSVNSIKFHNSGLLL 205 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeecccc--------------ceeeecccccceeeEEeccccceE
Confidence 345667999999999887777788999999999999999998 888999999999999999999999
Q ss_pred EEecCCCcEEEEe
Q psy11100 86 TSSDETGLIIVWM 98 (110)
Q Consensus 86 ~s~~~~~~i~~w~ 98 (110)
++++.|++-.+|.
T Consensus 206 lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 206 LTASGDETAHIWK 218 (481)
T ss_pred EEccCCcchHHHH
Confidence 9999999988886
No 173
>KOG1007|consensus
Probab=98.73 E-value=4.8e-08 Score=61.95 Aligned_cols=78 Identities=23% Similarity=0.372 Sum_probs=61.0
Q ss_pred CCCCceEEEEEec--CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEe-eccCCCeEEEEEcCCCCe-EEE
Q psy11100 12 PNNTKVNCLAWHQ--NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL-QGHSGKVRAIIWNEQYEK-LTS 87 (110)
Q Consensus 12 ~h~~~v~~~~~~p--~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~-l~s 87 (110)
+++...+.-+|+| +|+-+++.+ ++++..||.++.. ....+ ..|...|..+.|+|+-+. |++
T Consensus 168 e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~--------------~~~sI~dAHgq~vrdlDfNpnkq~~lvt 232 (370)
T KOG1007|consen 168 EMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMK--------------KNNSIEDAHGQRVRDLDFNPNKQHILVT 232 (370)
T ss_pred cccceecccccCCCCccceEEEeC-CCcEEEEEccchh--------------hhcchhhhhcceeeeccCCCCceEEEEE
Confidence 3556677788999 576666644 7899999999875 22233 457888999999999877 899
Q ss_pred ecCCCcEEEEeCCCCCC
Q psy11100 88 SDETGLIIVWMLYKCND 104 (110)
Q Consensus 88 ~~~~~~i~~w~~~~~~~ 104 (110)
++.||.|++||.++.+.
T Consensus 233 ~gDdgyvriWD~R~tk~ 249 (370)
T KOG1007|consen 233 CGDDGYVRIWDTRKTKF 249 (370)
T ss_pred cCCCccEEEEeccCCCc
Confidence 99999999999987553
No 174
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.72 E-value=4.9e-07 Score=58.47 Aligned_cols=84 Identities=25% Similarity=0.377 Sum_probs=69.2
Q ss_pred eccCCCCCceEEEEEecCCCEEEEEec-CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC-eE
Q psy11100 8 KIAIPNNTKVNCLAWHQNQGWIAVGGD-DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE-KL 85 (110)
Q Consensus 8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l 85 (110)
.....|...+..++|+|++..++.++. ++.+++|+..... ....+..|...+.+++|+|++. .+
T Consensus 149 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~~~ 214 (466)
T COG2319 149 RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK--------------PLSTLAGHTDPVSSLAFSPDGGLLI 214 (466)
T ss_pred EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc--------------eEEeeccCCCceEEEEEcCCcceEE
Confidence 344578899999999999998888875 9999999999754 4566777999999999999998 56
Q ss_pred EEecCCCcEEEEeCCCCCCh
Q psy11100 86 TSSDETGLIIVWMLYKCNDD 105 (110)
Q Consensus 86 ~s~~~~~~i~~w~~~~~~~~ 105 (110)
++++.|+.+.+||...+...
T Consensus 215 ~~~~~d~~i~~wd~~~~~~~ 234 (466)
T COG2319 215 ASGSSDGTIRLWDLSTGKLL 234 (466)
T ss_pred EEecCCCcEEEEECCCCcEE
Confidence 66689999999987755543
No 175
>KOG1445|consensus
Probab=98.69 E-value=9.4e-08 Score=66.27 Aligned_cols=74 Identities=26% Similarity=0.395 Sum_probs=64.5
Q ss_pred CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100 15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLI 94 (110)
Q Consensus 15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i 94 (110)
-.|.++.|+|...-|......|.+++||+.+.. .+..+.+|...|.+..|+.||.++++++.|..|
T Consensus 129 ~~vE~l~fHpTaDgil~s~a~g~v~i~D~stqk--------------~~~el~~h~d~vQSa~WseDG~llatscKdkqi 194 (1012)
T KOG1445|consen 129 VIVECLRFHPTADGILASGAHGSVYITDISTQK--------------TAVELSGHTDKVQSADWSEDGKLLATSCKDKQI 194 (1012)
T ss_pred eEEEEeecccCcCceEEeccCceEEEEEcccCc--------------eeecccCCchhhhccccccCCceEeeecCCcce
Confidence 468899999975555555667999999999987 778889999999999999999999999999999
Q ss_pred EEEeCCCC
Q psy11100 95 IVWMLYKC 102 (110)
Q Consensus 95 ~~w~~~~~ 102 (110)
++||.+..
T Consensus 195 rifDPRa~ 202 (1012)
T KOG1445|consen 195 RIFDPRAS 202 (1012)
T ss_pred EEeCCccC
Confidence 99998753
No 176
>KOG1273|consensus
Probab=98.69 E-value=3.1e-07 Score=58.97 Aligned_cols=60 Identities=13% Similarity=0.241 Sum_probs=46.3
Q ss_pred ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC
Q psy11100 9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE 83 (110)
Q Consensus 9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 83 (110)
+..+|.-+|.+++||+||++|++++.|..+.+||+..+. ++..+.- ...|....|+|...
T Consensus 60 ~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs--------------~l~rirf-~spv~~~q~hp~k~ 119 (405)
T KOG1273|consen 60 MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS--------------PLKRIRF-DSPVWGAQWHPRKR 119 (405)
T ss_pred hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC--------------ceeEEEc-cCccceeeeccccC
Confidence 344899999999999999999999999999999999876 3333332 35566666666443
No 177
>KOG0321|consensus
Probab=98.68 E-value=9.4e-08 Score=65.83 Aligned_cols=97 Identities=13% Similarity=0.185 Sum_probs=63.7
Q ss_pred eccCCCCCceEEEEEecCC-CEEEEEecCCcEEEEEcCCCCCc-------------CCcccccccceeeeEEeeccCCCe
Q psy11100 8 KIAIPNNTKVNCLAWHQNQ-GWIAVGGDDGLLKVLKLDTGKES-------------TGQVAAANVNLAMNQSLQGHSGKV 73 (110)
Q Consensus 8 ~~~~~h~~~v~~~~~~p~~-~~l~~~~~~~~v~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~v 73 (110)
++.++|++.|..++|.|.. ..+++|+.||.+.+||....... .+.+.+....-..+...+.+...+
T Consensus 138 ~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti 217 (720)
T KOG0321|consen 138 RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTI 217 (720)
T ss_pred eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCce
Confidence 4678999999999999965 56899999999999998754311 010000000000122233344444
Q ss_pred EE---EEEcCCCCeEEEecC-CCcEEEEeCCCCCC
Q psy11100 74 RA---IIWNEQYEKLTSSDE-TGLIIVWMLYKCND 104 (110)
Q Consensus 74 ~~---~~~s~~~~~l~s~~~-~~~i~~w~~~~~~~ 104 (110)
.+ +-+..|...|++++. |+.|+|||+++...
T Consensus 218 ~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~ 252 (720)
T KOG0321|consen 218 FSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYT 252 (720)
T ss_pred eeeeEEEEEeccceeeeccCCCcceEEEeeccccc
Confidence 44 555677788888887 99999999987654
No 178
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.64 E-value=3.8e-07 Score=57.78 Aligned_cols=76 Identities=11% Similarity=-0.018 Sum_probs=56.3
Q ss_pred EEEEEecCCCEEEE-EecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe-cCCCcEE
Q psy11100 18 NCLAWHQNQGWIAV-GGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS-DETGLII 95 (110)
Q Consensus 18 ~~~~~~p~~~~l~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~~~~i~ 95 (110)
..+.|+|+++.+.. ...++.+.+||..... ..... .+...+.+++|+|+|+.++++ ..++.|.
T Consensus 210 ~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~--------------~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~ 274 (300)
T TIGR03866 210 VGIKLTKDGKTAFVALGPANRVAVVDAKTYE--------------VLDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVS 274 (300)
T ss_pred cceEECCCCCEEEEEcCCCCeEEEEECCCCc--------------EEEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEE
Confidence 45788999987544 3456679999998665 22222 234568899999999998776 4689999
Q ss_pred EEeCCCCCChhhh
Q psy11100 96 VWMLYKCNDDDEW 108 (110)
Q Consensus 96 ~w~~~~~~~~~~~ 108 (110)
+||+.+++.+.++
T Consensus 275 v~d~~~~~~~~~~ 287 (300)
T TIGR03866 275 VIDVAALKVIKSI 287 (300)
T ss_pred EEECCCCcEEEEE
Confidence 9999998876654
No 179
>KOG2096|consensus
Probab=98.64 E-value=3.3e-07 Score=58.97 Aligned_cols=92 Identities=12% Similarity=0.085 Sum_probs=65.6
Q ss_pred CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCC--CcCCc-ccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100 11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGK--ESTGQ-VAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS 87 (110)
Q Consensus 11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 87 (110)
.+|++.|...+|+|+.+.+++.+.||+.++||.+-.- ++++. ++... ..+....+.-..++++|.|..|+.
T Consensus 275 kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~------~pl~aag~~p~RL~lsP~g~~lA~ 348 (420)
T KOG2096|consen 275 KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGS------APLHAAGSEPVRLELSPSGDSLAV 348 (420)
T ss_pred ccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCC------cchhhcCCCceEEEeCCCCcEEEe
Confidence 4899999999999999999999999999999987432 11111 11100 011222334447899999998765
Q ss_pred ecCCCcEEEEeCCCCCChhhhh
Q psy11100 88 SDETGLIIVWMLYKCNDDDEWK 109 (110)
Q Consensus 88 ~~~~~~i~~w~~~~~~~~~~~~ 109 (110)
+ ....|.++..++|+...+++
T Consensus 349 s-~gs~l~~~~se~g~~~~~~e 369 (420)
T KOG2096|consen 349 S-FGSDLKVFASEDGKDYPELE 369 (420)
T ss_pred e-cCCceEEEEcccCccchhHH
Confidence 5 36689999999998887765
No 180
>KOG4328|consensus
Probab=98.64 E-value=3.7e-07 Score=60.82 Aligned_cols=83 Identities=19% Similarity=0.258 Sum_probs=65.8
Q ss_pred CCCCceEEEEEecCC--CEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEe
Q psy11100 12 PNNTKVNCLAWHQNQ--GWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSS 88 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~--~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~ 88 (110)
.+.++|++++|+|.. ..+++|+..|.|=+||+..... . ......+..|+..|.++.|+|...- +++.
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~---d-------~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ss 253 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK---D-------KDGVYLFTPHSGPVSGLKFSPANTSQIYSS 253 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC---c-------cCceEEeccCCccccceEecCCChhheeee
Confidence 477899999999964 4689999999999999962210 0 0124567789999999999997554 9999
Q ss_pred cCCCcEEEEeCCCCCC
Q psy11100 89 DETGLIIVWMLYKCND 104 (110)
Q Consensus 89 ~~~~~i~~w~~~~~~~ 104 (110)
+.||+|++-|++++..
T Consensus 254 SyDGtiR~~D~~~~i~ 269 (498)
T KOG4328|consen 254 SYDGTIRLQDFEGNIS 269 (498)
T ss_pred ccCceeeeeeecchhh
Confidence 9999999999987654
No 181
>KOG0307|consensus
Probab=98.63 E-value=7.5e-08 Score=69.53 Aligned_cols=80 Identities=25% Similarity=0.351 Sum_probs=64.0
Q ss_pred CCceEEEEEecCCCE----EEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC-eEEEe
Q psy11100 14 NTKVNCLAWHQNQGW----IAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE-KLTSS 88 (110)
Q Consensus 14 ~~~v~~~~~~p~~~~----l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~ 88 (110)
..+...++|.+.|.. |+.|..||.|-+||....... .....+.++..|++.|..+.||+.+. ++++|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~--------~~~~~la~~~~h~G~V~gLDfN~~q~nlLASG 135 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIAN--------ASEEVLATKSKHTGPVLGLDFNPFQGNLLASG 135 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccC--------cchHHHhhhcccCCceeeeeccccCCceeecc
Confidence 357888999986654 888899999999998864100 01124667788999999999999866 79999
Q ss_pred cCCCcEEEEeCCC
Q psy11100 89 DETGLIIVWMLYK 101 (110)
Q Consensus 89 ~~~~~i~~w~~~~ 101 (110)
+++|.|.+||+.+
T Consensus 136 a~~geI~iWDlnn 148 (1049)
T KOG0307|consen 136 ADDGEILIWDLNK 148 (1049)
T ss_pred CCCCcEEEeccCC
Confidence 9999999999986
No 182
>KOG1524|consensus
Probab=98.63 E-value=9.7e-08 Score=64.95 Aligned_cols=89 Identities=17% Similarity=0.290 Sum_probs=67.0
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCc----C--------------Cc---------ccccccceeeeE
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKES----T--------------GQ---------VAAANVNLAMNQ 64 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~----~--------------~~---------~~~~~~~~~~~~ 64 (110)
.|.+.+.+-.|+|||.-|++.+.||.+++|.-....-+ . +- .++-..+. ..-
T Consensus 102 AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~-k~i 180 (737)
T KOG1524|consen 102 AHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANS-KII 180 (737)
T ss_pred hhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeeccccc-cee
Confidence 68899999999999999999999999999975432100 0 00 00111111 134
Q ss_pred EeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCC
Q psy11100 65 SLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK 101 (110)
Q Consensus 65 ~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~ 101 (110)
..+.|.+-|.++.||+....+++++.|-..++||-..
T Consensus 181 ~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G 217 (737)
T KOG1524|consen 181 RWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG 217 (737)
T ss_pred EEeccCcEEEEeecCccccceeecCCceeEEeecccC
Confidence 5678999999999999999999999999999999643
No 183
>KOG0644|consensus
Probab=98.60 E-value=4.7e-08 Score=69.26 Aligned_cols=85 Identities=21% Similarity=0.416 Sum_probs=76.2
Q ss_pred CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100 11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE 90 (110)
Q Consensus 11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 90 (110)
.+|.+.|.|..|...|.++++|+.|..++||...+.. ++..+.+|.+.+..++.+.+..++++++.
T Consensus 187 lgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~--------------~lAs~rGhs~ditdlavs~~n~~iaaaS~ 252 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR--------------CLASCRGHSGDITDLAVSSNNTMIAAASN 252 (1113)
T ss_pred HhhhhheeeeeeccccceEeecCccceeeeeeccchh--------------hhccCCCCccccchhccchhhhhhhhccc
Confidence 3799999999999999999999999999999988776 67888999999999999998888999999
Q ss_pred CCcEEEEeCCCCCChhhhh
Q psy11100 91 TGLIIVWMLYKCNDDDEWK 109 (110)
Q Consensus 91 ~~~i~~w~~~~~~~~~~~~ 109 (110)
|..|++|.+..+.-+.-|+
T Consensus 253 D~vIrvWrl~~~~pvsvLr 271 (1113)
T KOG0644|consen 253 DKVIRVWRLPDGAPVSVLR 271 (1113)
T ss_pred CceEEEEecCCCchHHHHh
Confidence 9999999999887665443
No 184
>KOG1036|consensus
Probab=98.58 E-value=6.6e-07 Score=57.01 Aligned_cols=81 Identities=11% Similarity=0.190 Sum_probs=65.5
Q ss_pred eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100 8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS 87 (110)
Q Consensus 8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 87 (110)
++..+-...|+.+.|+|.+..|+.++.||++++|++.... +.....|..++.+.+|.+ ...+++
T Consensus 7 ~l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~---------------l~~~~~~~~plL~c~F~d-~~~~~~ 70 (323)
T KOG1036|consen 7 ELENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS---------------LKLKFKHGAPLLDCAFAD-ESTIVT 70 (323)
T ss_pred ccCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh---------------hhhheecCCceeeeeccC-CceEEE
Confidence 3445556889999999988888888899999999998764 233345788999999977 445789
Q ss_pred ecCCCcEEEEeCCCCCC
Q psy11100 88 SDETGLIIVWMLYKCND 104 (110)
Q Consensus 88 ~~~~~~i~~w~~~~~~~ 104 (110)
++.||.|+.+|+.+++.
T Consensus 71 G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNE 87 (323)
T ss_pred eccCceEEEEEecCCcc
Confidence 99999999999988764
No 185
>KOG1272|consensus
Probab=98.56 E-value=9.7e-08 Score=63.75 Aligned_cols=77 Identities=12% Similarity=0.204 Sum_probs=66.9
Q ss_pred CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCc
Q psy11100 14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGL 93 (110)
Q Consensus 14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~ 93 (110)
.+.+..++-+|-+..+-.|...|.|.+|...... ++..+..|.+.|+++++.+.|.+.++.+.|..
T Consensus 251 ~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske--------------PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~ 316 (545)
T KOG1272|consen 251 AGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE--------------PLVKILCHRGPVSSIAVDRGGRYMATTGLDRK 316 (545)
T ss_pred CCccchhhcCCccceEEEcCCCceEEecCCCCcc--------------hHHHHHhcCCCcceEEECCCCcEEeecccccc
Confidence 3566777788888888899999999999888765 66777889999999999999999999999999
Q ss_pred EEEEeCCCCCC
Q psy11100 94 IIVWMLYKCND 104 (110)
Q Consensus 94 i~~w~~~~~~~ 104 (110)
+++||+++-..
T Consensus 317 ~kIWDlR~~~q 327 (545)
T KOG1272|consen 317 VKIWDLRNFYQ 327 (545)
T ss_pred eeEeeeccccc
Confidence 99999987543
No 186
>KOG2919|consensus
Probab=98.56 E-value=7.9e-07 Score=57.32 Aligned_cols=78 Identities=24% Similarity=0.367 Sum_probs=64.7
Q ss_pred CCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100 12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE 90 (110)
Q Consensus 12 ~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 90 (110)
+..+-+.|++|+|- ...++.|+....+=++.-.... +++.+.+|.+.|..++|.++|+.|.++..
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~--------------pl~llggh~gGvThL~~~edGn~lfsGaR 270 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR--------------PLQLLGGHGGGVTHLQWCEDGNKLFSGAR 270 (406)
T ss_pred cccceeeeeeccCCCCcceeeecccceeeeEecCCCC--------------ceeeecccCCCeeeEEeccCcCeeccccc
Confidence 34677999999996 4578999888887777777665 67888899999999999999999888875
Q ss_pred -CCcEEEEeCCCCC
Q psy11100 91 -TGLIIVWMLYKCN 103 (110)
Q Consensus 91 -~~~i~~w~~~~~~ 103 (110)
+..|.+||++.-+
T Consensus 271 k~dkIl~WDiR~~~ 284 (406)
T KOG2919|consen 271 KDDKILCWDIRYSR 284 (406)
T ss_pred CCCeEEEEeehhcc
Confidence 6789999998643
No 187
>KOG4227|consensus
Probab=98.55 E-value=1.9e-07 Score=61.65 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=69.4
Q ss_pred cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEee-ccCCCeEEEEEcCCCCeEEEe
Q psy11100 10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQ-GHSGKVRAIIWNEQYEKLTSS 88 (110)
Q Consensus 10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~ 88 (110)
..+|++-|.++.|+.++++|++|+.|..+++|+....-.... +. ++.... .|...|.+++|+-...++.++
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~-----~K---PI~~~~~~H~SNIF~L~F~~~N~~~~SG 123 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT-----PK---PIGVMEHPHRSNIFSLEFDLENRFLYSG 123 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC-----CC---CceeccCccccceEEEEEccCCeeEecC
Confidence 347999999999999999999999999999999875421100 00 233333 355889999999988899999
Q ss_pred cCCCcEEEEeCCCCCCh
Q psy11100 89 DETGLIIVWMLYKCNDD 105 (110)
Q Consensus 89 ~~~~~i~~w~~~~~~~~ 105 (110)
+.+++|...|+++.+.+
T Consensus 124 ~~~~~VI~HDiEt~qsi 140 (609)
T KOG4227|consen 124 ERWGTVIKHDIETKQSI 140 (609)
T ss_pred CCcceeEeeecccceee
Confidence 99999999999877654
No 188
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.53 E-value=1.3e-06 Score=55.30 Aligned_cols=77 Identities=12% Similarity=0.160 Sum_probs=55.8
Q ss_pred CceEEEEEecCCCEE-EEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEE-EecCCC
Q psy11100 15 TKVNCLAWHQNQGWI-AVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT-SSDETG 92 (110)
Q Consensus 15 ~~v~~~~~~p~~~~l-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~~~~ 92 (110)
..+..++|+|++..+ +++..++.+++||..... ....+..+ ..+..++|+|+++.++ ++..++
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~--------------~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~ 95 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGE--------------VIGTLPSG-PDPELFALHPNGKILYIANEDDN 95 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCc--------------EEEeccCC-CCccEEEECCCCCEEEEEcCCCC
Confidence 346679999999876 566778999999998765 23333333 2345789999998754 555689
Q ss_pred cEEEEeCCCCCChh
Q psy11100 93 LIIVWMLYKCNDDD 106 (110)
Q Consensus 93 ~i~~w~~~~~~~~~ 106 (110)
.+.+||+.+++.+.
T Consensus 96 ~l~~~d~~~~~~~~ 109 (300)
T TIGR03866 96 LVTVIDIETRKVLA 109 (300)
T ss_pred eEEEEECCCCeEEe
Confidence 99999998765443
No 189
>KOG1587|consensus
Probab=98.52 E-value=3.5e-07 Score=63.29 Aligned_cols=78 Identities=15% Similarity=0.173 Sum_probs=63.5
Q ss_pred CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcC-CCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEe
Q psy11100 11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLD-TGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSS 88 (110)
Q Consensus 11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~ 88 (110)
..|.++|.++.++|-+..+...+.|..+++|... ... ++..+..+...|.+++|||.-.- |+++
T Consensus 395 ~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~--------------Pl~~~~~~~~~v~~vaWSptrpavF~~~ 460 (555)
T KOG1587|consen 395 ITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIAS--------------PLLSLDSSPDYVTDVAWSPTRPAVFATV 460 (555)
T ss_pred cccCcceEeeecCCCccceeeeeccceeEeccccCCCC--------------cchhhhhccceeeeeEEcCcCceEEEEE
Confidence 4678999999999988776665669999999888 333 45666667778999999997665 8899
Q ss_pred cCCCcEEEEeCCCC
Q psy11100 89 DETGLIIVWMLYKC 102 (110)
Q Consensus 89 ~~~~~i~~w~~~~~ 102 (110)
+.+|.|.+||+...
T Consensus 461 d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 461 DGDGNLDIWDLLQD 474 (555)
T ss_pred cCCCceehhhhhcc
Confidence 99999999998653
No 190
>KOG0270|consensus
Probab=98.50 E-value=1.3e-06 Score=57.99 Aligned_cols=83 Identities=17% Similarity=0.268 Sum_probs=64.5
Q ss_pred CCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEec
Q psy11100 12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSSD 89 (110)
Q Consensus 12 ~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~ 89 (110)
.|..+|.++.|+|. .+.|++|+.|++|.+.|.+... ....-..-.+.|-.++|.|.... +.++.
T Consensus 284 ~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~--------------~s~~~wk~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 284 HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS--------------NSGKEWKFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred hcCCceeEEEecCCCceEEEeccccceEEeeeccCcc--------------ccCceEEeccceEEEEecCCCceeEEEec
Confidence 47889999999995 7789999999999999998532 11111223578889999998777 77888
Q ss_pred CCCcEEEEeCCCC-CChhhh
Q psy11100 90 ETGLIIVWMLYKC-NDDDEW 108 (110)
Q Consensus 90 ~~~~i~~w~~~~~-~~~~~~ 108 (110)
.||+|+-+|.++. +.+.++
T Consensus 350 ddG~v~~~D~R~~~~~vwt~ 369 (463)
T KOG0270|consen 350 DDGTVYYFDIRNPGKPVWTL 369 (463)
T ss_pred CCceEEeeecCCCCCceeEE
Confidence 9999999999874 544443
No 191
>KOG3881|consensus
Probab=98.49 E-value=1.2e-06 Score=57.39 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=68.4
Q ss_pred CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEE-eeccCCCeEEEEEcCCCCeEEEecCCC
Q psy11100 14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQS-LQGHSGKVRAIIWNEQYEKLTSSDETG 92 (110)
Q Consensus 14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~~~ 92 (110)
..+++++...|+++.+.+|...+.+..||...+. .... +++-.+.++++..+|.++++++++.|.
T Consensus 247 E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k--------------l~g~~~kg~tGsirsih~hp~~~~las~GLDR 312 (412)
T KOG3881|consen 247 ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK--------------LLGCGLKGITGSIRSIHCHPTHPVLASCGLDR 312 (412)
T ss_pred cCcceeeeecCCCcEEEEecccchhheecccCce--------------eeccccCCccCCcceEEEcCCCceEEeeccce
Confidence 4678888899999999999999999999999886 4444 677889999999999999999999999
Q ss_pred cEEEEeCCCCCCh
Q psy11100 93 LIIVWMLYKCNDD 105 (110)
Q Consensus 93 ~i~~w~~~~~~~~ 105 (110)
.|+++|..+.+.+
T Consensus 313 yvRIhD~ktrkll 325 (412)
T KOG3881|consen 313 YVRIHDIKTRKLL 325 (412)
T ss_pred eEEEeecccchhh
Confidence 9999999985543
No 192
>KOG0974|consensus
Probab=98.49 E-value=1.6e-06 Score=62.43 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=66.1
Q ss_pred cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100 10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 89 (110)
..+|.+.+..+.++.+|.++++.+.|.++++|++.+.. ......-+|+..|..+.|.|. .+++++
T Consensus 171 l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~-------------~~~~~~fgHsaRvw~~~~~~n--~i~t~g 235 (967)
T KOG0974|consen 171 LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSRE-------------VLGCTGFGHSARVWACCFLPN--RIITVG 235 (967)
T ss_pred ecccCCceEEEEEccCCcEEEEEecCcceeeeeccccc-------------ccCcccccccceeEEEEeccc--eeEEec
Confidence 45899999999999999999999999999999999876 122355689999999999988 899999
Q ss_pred CCCcEEEEeCC
Q psy11100 90 ETGLIIVWMLY 100 (110)
Q Consensus 90 ~~~~i~~w~~~ 100 (110)
.|-+.++|+..
T Consensus 236 edctcrvW~~~ 246 (967)
T KOG0974|consen 236 EDCTCRVWGVN 246 (967)
T ss_pred cceEEEEEecc
Confidence 99999999544
No 193
>KOG2055|consensus
Probab=98.48 E-value=2.1e-06 Score=57.41 Aligned_cols=80 Identities=14% Similarity=0.198 Sum_probs=66.3
Q ss_pred CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC-eEEEecCC
Q psy11100 13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE-KLTSSDET 91 (110)
Q Consensus 13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~~ 91 (110)
..+.|+++.|+|.-+.+.+++.|+.+++|.+..... ..++.+.-...++.+..|.|+|+ .+++++..
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N------------~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rr 279 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN------------PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRR 279 (514)
T ss_pred CcCCceEEEecCCCceEEEecCCCcEEEEEecCccC------------hhheeeeeccCccceeeecCCCceEEEecccc
Confidence 457999999999999999999999999999886540 02344444567899999999999 68899999
Q ss_pred CcEEEEeCCCCCC
Q psy11100 92 GLIIVWMLYKCND 104 (110)
Q Consensus 92 ~~i~~w~~~~~~~ 104 (110)
..++.||+.+.+.
T Consensus 280 ky~ysyDle~ak~ 292 (514)
T KOG2055|consen 280 KYLYSYDLETAKV 292 (514)
T ss_pred eEEEEeecccccc
Confidence 9999999987664
No 194
>KOG2055|consensus
Probab=98.48 E-value=3.2e-06 Score=56.62 Aligned_cols=76 Identities=11% Similarity=0.179 Sum_probs=61.6
Q ss_pred CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCC-CeEEEEEcCCCCeEEEecCC
Q psy11100 13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSG-KVRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~s~~~~ 91 (110)
..+.|..+.|+.+++.|...+.+|.|.+||+.... ++..+....+ .-.+++.|+++.+|++|+..
T Consensus 343 ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~--------------~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~ 408 (514)
T KOG2055|consen 343 IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNS--------------CLHRFVDDGSVHGTSLCISLNGSYLATGSDS 408 (514)
T ss_pred eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcc--------------eEEEEeecCccceeeeeecCCCceEEeccCc
Confidence 35789999999999988888889999999999876 5565654322 23577888999999999999
Q ss_pred CcEEEEeCCCC
Q psy11100 92 GLIIVWMLYKC 102 (110)
Q Consensus 92 ~~i~~w~~~~~ 102 (110)
|.|.+||..+.
T Consensus 409 GiVNIYd~~s~ 419 (514)
T KOG2055|consen 409 GIVNIYDGNSC 419 (514)
T ss_pred ceEEEeccchh
Confidence 99999996653
No 195
>KOG4378|consensus
Probab=98.46 E-value=1.9e-06 Score=58.37 Aligned_cols=90 Identities=13% Similarity=0.231 Sum_probs=70.9
Q ss_pred ceeeee---eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeecc-CCCeEEEE
Q psy11100 2 FIYLSK---KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH-SGKVRAII 77 (110)
Q Consensus 2 ~~~~~~---~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~ 77 (110)
|++.+| +...+|++.|+++.++-..++|++++..|.+.+..+.+.. ....+... .+.|..+.
T Consensus 106 wdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~--------------~tt~f~~~sgqsvRll~ 171 (673)
T KOG4378|consen 106 WDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQ--------------KTTTFTIDSGQSVRLLR 171 (673)
T ss_pred hhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCc--------------cccceecCCCCeEEEee
Confidence 455444 3455899999999999999999999999999999988765 23445544 34567999
Q ss_pred EcCCCCe-EEEecCCCcEEEEeCCCCCCh
Q psy11100 78 WNEQYEK-LTSSDETGLIIVWMLYKCNDD 105 (110)
Q Consensus 78 ~s~~~~~-l~s~~~~~~i~~w~~~~~~~~ 105 (110)
++|..++ |.+++.+|.|.+||+...+-+
T Consensus 172 ys~skr~lL~~asd~G~VtlwDv~g~sp~ 200 (673)
T KOG4378|consen 172 YSPSKRFLLSIASDKGAVTLWDVQGMSPI 200 (673)
T ss_pred cccccceeeEeeccCCeEEEEeccCCCcc
Confidence 9998887 778889999999998765543
No 196
>KOG2139|consensus
Probab=98.46 E-value=2.3e-06 Score=55.94 Aligned_cols=73 Identities=12% Similarity=0.276 Sum_probs=57.6
Q ss_pred CCceEEEEEecCCCEEEEEec-CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCC
Q psy11100 14 NTKVNCLAWHQNQGWIAVGGD-DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETG 92 (110)
Q Consensus 14 ~~~v~~~~~~p~~~~l~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~ 92 (110)
..+|+.+.|++||..+++++. +..+.+||...+. ......-.-+.++-+.||||+.++..+.-|+
T Consensus 195 h~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~--------------~~pL~~~glgg~slLkwSPdgd~lfaAt~da 260 (445)
T KOG2139|consen 195 HNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ--------------KIPLIPKGLGGFSLLKWSPDGDVLFAATCDA 260 (445)
T ss_pred CceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC--------------cccccccCCCceeeEEEcCCCCEEEEecccc
Confidence 378999999999998888775 5689999999875 1111222346678899999999999999999
Q ss_pred cEEEEeCC
Q psy11100 93 LIIVWMLY 100 (110)
Q Consensus 93 ~i~~w~~~ 100 (110)
..++|+..
T Consensus 261 vfrlw~e~ 268 (445)
T KOG2139|consen 261 VFRLWQEN 268 (445)
T ss_pred eeeeehhc
Confidence 99999644
No 197
>KOG1310|consensus
Probab=98.45 E-value=6.3e-07 Score=61.32 Aligned_cols=89 Identities=18% Similarity=0.238 Sum_probs=68.5
Q ss_pred ccCCCCCceEEEEEecC--CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-E
Q psy11100 9 IAIPNNTKVNCLAWHQN--QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-L 85 (110)
Q Consensus 9 ~~~~h~~~v~~~~~~p~--~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l 85 (110)
|..+|++.|.++.|-|. .+.+++|..|..|+++|+..... ......-......+..|...|..++-.|++.. +
T Consensus 88 I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~----~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtf 163 (758)
T KOG1310|consen 88 ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKE----GGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTF 163 (758)
T ss_pred eecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccc----cccccCccchhhhhhhhhhhhhheecCCCCCceE
Confidence 55599999999999994 56789999999999999986420 00000011134556778899999999999955 9
Q ss_pred EEecCCCcEEEEeCCC
Q psy11100 86 TSSDETGLIIVWMLYK 101 (110)
Q Consensus 86 ~s~~~~~~i~~w~~~~ 101 (110)
.+++.||+++-+|++.
T Consensus 164 wsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 164 WSASEDGTIRQYDIRE 179 (758)
T ss_pred EEecCCcceeeecccC
Confidence 9999999999999986
No 198
>KOG0644|consensus
Probab=98.43 E-value=8.2e-08 Score=68.08 Aligned_cols=71 Identities=28% Similarity=0.448 Sum_probs=64.6
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 91 (110)
||.+.++.++.+-+...+++++.|..+++|.+..+. ++..+.+|++.|..++|+|.- +.+.|
T Consensus 230 Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~--------------pvsvLrghtgavtaiafsP~~----sss~d 291 (1113)
T KOG0644|consen 230 GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA--------------PVSVLRGHTGAVTAIAFSPRA----SSSDD 291 (1113)
T ss_pred CCccccchhccchhhhhhhhcccCceEEEEecCCCc--------------hHHHHhccccceeeeccCccc----cCCCC
Confidence 799999999998888889999999999999999876 677889999999999999964 77889
Q ss_pred CcEEEEeCC
Q psy11100 92 GLIIVWMLY 100 (110)
Q Consensus 92 ~~i~~w~~~ 100 (110)
|++++||.+
T Consensus 292 gt~~~wd~r 300 (1113)
T KOG0644|consen 292 GTCRIWDAR 300 (1113)
T ss_pred CceEecccc
Confidence 999999987
No 199
>KOG1523|consensus
Probab=98.42 E-value=2.2e-06 Score=55.15 Aligned_cols=80 Identities=15% Similarity=0.302 Sum_probs=68.5
Q ss_pred CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100 15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLI 94 (110)
Q Consensus 15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i 94 (110)
.+|+|.+|++|+.-++.+.....+.|+...... .++...++..|...|+.+.|+|.+..|++++.|..-
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~-----------~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drna 79 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-----------LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNA 79 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCC-----------CceeceehhhhCcceeEEeecCCCCceeEccCCCCc
Confidence 689999999999999998888899998777553 244678889999999999999999999999999999
Q ss_pred EEEeC-CCCCCh
Q psy11100 95 IVWML-YKCNDD 105 (110)
Q Consensus 95 ~~w~~-~~~~~~ 105 (110)
++|.. ..+.+.
T Consensus 80 yVw~~~~~~~Wk 91 (361)
T KOG1523|consen 80 YVWTQPSGGTWK 91 (361)
T ss_pred cccccCCCCeec
Confidence 99998 555543
No 200
>KOG1188|consensus
Probab=98.42 E-value=1.8e-06 Score=55.81 Aligned_cols=84 Identities=17% Similarity=0.280 Sum_probs=65.7
Q ss_pred cCCCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEE
Q psy11100 10 AIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTS 87 (110)
Q Consensus 10 ~~~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s 87 (110)
...|...|+++.|+|. .+.|++|+.||.+.+||+....+.+ .+...-.+...|.++.|...+.. +.+
T Consensus 161 ~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeD-----------aL~~viN~~sSI~~igw~~~~ykrI~c 229 (376)
T KOG1188|consen 161 NESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEED-----------ALLHVINHGSSIHLIGWLSKKYKRIMC 229 (376)
T ss_pred hhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchh-----------hHHHhhcccceeeeeeeecCCcceEEE
Confidence 3479999999999995 6789999999999999998654111 12223346677999999887743 778
Q ss_pred ecCCCcEEEEeCCCCCC
Q psy11100 88 SDETGLIIVWMLYKCND 104 (110)
Q Consensus 88 ~~~~~~i~~w~~~~~~~ 104 (110)
.++..++.+|+++.+..
T Consensus 230 lTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 230 LTHMETFAIYELEDGSE 246 (376)
T ss_pred EEccCceeEEEccCCCh
Confidence 88999999999988773
No 201
>KOG2106|consensus
Probab=98.40 E-value=6.8e-06 Score=55.81 Aligned_cols=91 Identities=8% Similarity=0.090 Sum_probs=61.6
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCC------CcCCcccccccceee-----------------eEEeec
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGK------ESTGQVAAANVNLAM-----------------NQSLQG 68 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~------~~~~~~~~~~~~~~~-----------------~~~~~~ 68 (110)
+|......++.+|+.+.+++++.|+.+++|+-.... ++.......+.+... +.+++.
T Consensus 366 gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~ 445 (626)
T KOG2106|consen 366 GHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHT 445 (626)
T ss_pred ecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEe
Confidence 788888888888888888888888888888833211 010000111111000 122233
Q ss_pred cCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCC
Q psy11100 69 HSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKC 102 (110)
Q Consensus 69 ~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~ 102 (110)
...+++.++++|+|..|+-++.|+.|++|.+..+
T Consensus 446 d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~ 479 (626)
T KOG2106|consen 446 DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN 479 (626)
T ss_pred cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence 3678999999999999999999999999988643
No 202
>KOG2111|consensus
Probab=98.38 E-value=1.7e-06 Score=55.52 Aligned_cols=67 Identities=16% Similarity=0.234 Sum_probs=55.2
Q ss_pred EecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCc-EEEEeCCCCCChhhhhC
Q psy11100 32 GGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGL-IIVWMLYKCNDDDEWKR 110 (110)
Q Consensus 32 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~-i~~w~~~~~~~~~~~~~ 110 (110)
|...|.|.+-|+..... .....+..|...|.+++.+.+|..+|+++..|+ |++||..+|..+.|+||
T Consensus 155 g~k~GqvQi~dL~~~~~------------~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR 222 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKP------------NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR 222 (346)
T ss_pred CCccceEEEEEhhhcCc------------CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec
Confidence 44567888888876540 012567889999999999999999999999887 77999999999999986
No 203
>KOG4378|consensus
Probab=98.37 E-value=2.9e-06 Score=57.57 Aligned_cols=78 Identities=9% Similarity=0.173 Sum_probs=64.1
Q ss_pred CCCCceEEEEEecCCC-EEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100 12 PNNTKVNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE 90 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 90 (110)
.|.++...++|+|..+ ++++.+.|..+.+||..... ....-.+..+...++|+++|..|+.|..
T Consensus 206 ~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~---------------s~~~l~y~~Plstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 206 AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA---------------STDRLTYSHPLSTVAFSECGTYLCAGNS 270 (673)
T ss_pred hccCCcCcceecCCccceEEEecccceEEEeeccccc---------------ccceeeecCCcceeeecCCceEEEeecC
Confidence 6889999999999754 67888999999999998654 1222234567889999999999999999
Q ss_pred CCcEEEEeCCCCCC
Q psy11100 91 TGLIIVWMLYKCND 104 (110)
Q Consensus 91 ~~~i~~w~~~~~~~ 104 (110)
.|.|..||++..+.
T Consensus 271 ~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 271 KGELIAYDMRSTKA 284 (673)
T ss_pred CceEEEEecccCCC
Confidence 99999999986543
No 204
>KOG1034|consensus
Probab=98.35 E-value=3.7e-06 Score=54.32 Aligned_cols=79 Identities=16% Similarity=0.412 Sum_probs=66.1
Q ss_pred CCCceEEEEEecC----CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCC-CeEEE
Q psy11100 13 NNTKVNCLAWHQN----QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQY-EKLTS 87 (110)
Q Consensus 13 h~~~v~~~~~~p~----~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s 87 (110)
|......++|+-+ ..+++.++.-|.+++.|..... ....+.+|.+.|+.+.+.|+. +++++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~--------------~~~~~~ghG~sINeik~~p~~~qlvls 153 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQ--------------CSKNYRGHGGSINEIKFHPDRPQLVLS 153 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhh--------------hccceeccCccchhhhcCCCCCcEEEE
Confidence 6667778888764 3468888899999999998876 567788999999999999975 56899
Q ss_pred ecCCCcEEEEeCCCCCCh
Q psy11100 88 SDETGLIIVWMLYKCNDD 105 (110)
Q Consensus 88 ~~~~~~i~~w~~~~~~~~ 105 (110)
++.|.+|++||+++...+
T Consensus 154 ~SkD~svRlwnI~~~~Cv 171 (385)
T KOG1034|consen 154 ASKDHSVRLWNIQTDVCV 171 (385)
T ss_pred ecCCceEEEEeccCCeEE
Confidence 999999999999987654
No 205
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.33 E-value=1e-05 Score=54.78 Aligned_cols=77 Identities=16% Similarity=0.192 Sum_probs=51.3
Q ss_pred CCCCceEEEEEecCCCEEEEEecC---CcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDD---GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS 88 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 88 (110)
.|...+...+|+|||+.++..+.+ ..+++||+..+.. ..+..+.+ ....++|+|+|..++.+
T Consensus 201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~------------~~l~~~~g---~~~~~~wSPDG~~La~~ 265 (429)
T PRK01742 201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR------------KVVASFRG---HNGAPAFSPDGSRLAFA 265 (429)
T ss_pred cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce------------EEEecCCC---ccCceeECCCCCEEEEE
Confidence 456678999999999998877643 3699999976540 01222222 23468999999987765
Q ss_pred -cCCCcEEE--EeCCCCC
Q psy11100 89 -DETGLIIV--WMLYKCN 103 (110)
Q Consensus 89 -~~~~~i~~--w~~~~~~ 103 (110)
+.++.+.+ ||+.++.
T Consensus 266 ~~~~g~~~Iy~~d~~~~~ 283 (429)
T PRK01742 266 SSKDGVLNIYVMGANGGT 283 (429)
T ss_pred EecCCcEEEEEEECCCCC
Confidence 45676554 5665543
No 206
>KOG1538|consensus
Probab=98.33 E-value=7.2e-07 Score=62.41 Aligned_cols=89 Identities=17% Similarity=0.183 Sum_probs=55.8
Q ss_pred cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCC---Cc------CCcccccccceee----eEEe----------
Q psy11100 10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGK---ES------TGQVAAANVNLAM----NQSL---------- 66 (110)
Q Consensus 10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~---~~------~~~~~~~~~~~~~----~~~~---------- 66 (110)
..+|...|.|++|+.||+.+++|+.|..|.+|...... ++ +-...+..+.+.. .+.+
T Consensus 49 LKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K 128 (1081)
T KOG1538|consen 49 LKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSK 128 (1081)
T ss_pred cccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHh
Confidence 34899999999999999999999999999999865321 00 0000000000000 0000
Q ss_pred eccCCCeEEEEEcCCCCeEEEecCCCcEEEEe
Q psy11100 67 QGHSGKVRAIIWNEQYEKLTSSDETGLIIVWM 98 (110)
Q Consensus 67 ~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~ 98 (110)
......+.+.+|+.||+.++.|-.+|+|.+=|
T Consensus 129 ~kss~R~~~CsWtnDGqylalG~~nGTIsiRN 160 (1081)
T KOG1538|consen 129 HKSSSRIICCSWTNDGQYLALGMFNGTISIRN 160 (1081)
T ss_pred hhhheeEEEeeecCCCcEEEEeccCceEEeec
Confidence 00124567778888888888888888877643
No 207
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.32 E-value=1.6e-05 Score=53.86 Aligned_cols=77 Identities=18% Similarity=0.123 Sum_probs=55.7
Q ss_pred CCCCceEEEEEecCCCEEEEEec---CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEE-E
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGD---DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT-S 87 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s 87 (110)
.|...+...+|+|||+.|+..+. +..+.+||+..+. ...+..+.+.+...+|+|+|..++ +
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~---------------~~~l~~~~g~~~~~~~SPDG~~la~~ 263 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ---------------RELVGNFPGMTFAPRFSPDGRKVVMS 263 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc---------------EEEeecCCCcccCcEECCCCCEEEEE
Confidence 45678999999999998887653 3579999998765 123344455667889999999865 4
Q ss_pred ecCCC--cEEEEeCCCCC
Q psy11100 88 SDETG--LIIVWMLYKCN 103 (110)
Q Consensus 88 ~~~~~--~i~~w~~~~~~ 103 (110)
.+.++ .|.+||+.++.
T Consensus 264 ~~~~g~~~Iy~~d~~~~~ 281 (435)
T PRK05137 264 LSQGGNTDIYTMDLRSGT 281 (435)
T ss_pred EecCCCceEEEEECCCCc
Confidence 44444 47778887664
No 208
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.32 E-value=2e-05 Score=50.94 Aligned_cols=78 Identities=31% Similarity=0.513 Sum_probs=61.8
Q ss_pred CCCCceEEEEEecCCC-EEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeE-EeeccCCCeEEEEEcCCCCeEEEec
Q psy11100 12 PNNTKVNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQ-SLQGHSGKVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~ 89 (110)
+|...+.+++|+|++. .+++++.|+.+++||..... ... .+..|.... ...|+|++..+++++
T Consensus 196 ~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~--------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 260 (466)
T COG2319 196 GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK--------------LLRSTLSGHSDSV-VSSFSPDGSLLASGS 260 (466)
T ss_pred cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCc--------------EEeeecCCCCcce-eEeECCCCCEEEEec
Confidence 5889999999999987 55555889999999877444 334 566776665 448999998888999
Q ss_pred CCCcEEEEeCCCCCC
Q psy11100 90 ETGLIIVWMLYKCND 104 (110)
Q Consensus 90 ~~~~i~~w~~~~~~~ 104 (110)
.++.+++|+......
T Consensus 261 ~d~~~~~~~~~~~~~ 275 (466)
T COG2319 261 SDGTIRLWDLRSSSS 275 (466)
T ss_pred CCCcEEEeeecCCCc
Confidence 999999999886553
No 209
>KOG1587|consensus
Probab=98.29 E-value=1.2e-05 Score=55.84 Aligned_cols=81 Identities=21% Similarity=0.346 Sum_probs=60.9
Q ss_pred CCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe--EEEec
Q psy11100 13 NNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK--LTSSD 89 (110)
Q Consensus 13 h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~s~~ 89 (110)
-...|.|+.|+|. ...++.|..+|.|.+||+.......... .......|...+..+.|-.+... |++++
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~--------ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s 312 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG--------LSALEVSHSEPVTAVVWLQNEHNTEFFSLS 312 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc--------cccccccCCcCeEEEEEeccCCCCceEEEe
Confidence 4578999999995 6788999999999999999875211000 12334567888999999665443 99999
Q ss_pred CCCcEEEEeCCC
Q psy11100 90 ETGLIIVWMLYK 101 (110)
Q Consensus 90 ~~~~i~~w~~~~ 101 (110)
.||.|..|+++.
T Consensus 313 sDG~i~~W~~~~ 324 (555)
T KOG1587|consen 313 SDGSICSWDTDM 324 (555)
T ss_pred cCCcEeeeeccc
Confidence 999999997654
No 210
>KOG1524|consensus
Probab=98.28 E-value=2.5e-06 Score=58.34 Aligned_cols=85 Identities=21% Similarity=0.304 Sum_probs=59.1
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCC--------cCCccc--c----cccceeeeEEeeccCCCeEEEE
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKE--------STGQVA--A----ANVNLAMNQSLQGHSGKVRAII 77 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~--------~~~~~~--~----~~~~~~~~~~~~~~~~~v~~~~ 77 (110)
.|.+-|.++.|+|....+++|+.|...++||.....- ...... + ....+...+.-+...+.|..++
T Consensus 184 AHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~~~p~~GSifnls 263 (737)
T KOG1524|consen 184 AHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYLLWSYNTARFSSPRVGSIFNLS 263 (737)
T ss_pred ccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccccceeeeeeeeeeecCCCccceEEEE
Confidence 6999999999999999999999999999999864320 000000 0 0111111222223457788899
Q ss_pred EcCCCCeEEEecCCCcEEE
Q psy11100 78 WNEQYEKLTSSDETGLIIV 96 (110)
Q Consensus 78 ~s~~~~~l~s~~~~~~i~~ 96 (110)
||+||..+++++..|.+.+
T Consensus 264 WS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 264 WSADGTQATCGTSTGQLIV 282 (737)
T ss_pred EcCCCceeeccccCceEEE
Confidence 9999999998888888765
No 211
>KOG1409|consensus
Probab=98.27 E-value=3.4e-06 Score=54.79 Aligned_cols=79 Identities=28% Similarity=0.492 Sum_probs=67.0
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 91 (110)
+|.+.+.+++|.|....+.+|..|..+.+||+.... .....+.+|.+.|..+...+....+++++.|
T Consensus 195 ~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~-------------g~~~el~gh~~kV~~l~~~~~t~~l~S~~ed 261 (404)
T KOG1409|consen 195 GHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK-------------GTAYELQGHNDKVQALSYAQHTRQLISCGED 261 (404)
T ss_pred CcccceEEEEEcCCCcEEEeccccCceEEEeccCCc-------------ceeeeeccchhhhhhhhhhhhheeeeeccCC
Confidence 899999999999999999999999999999998765 1345667888888887777777779999999
Q ss_pred CcEEEEeCCCCC
Q psy11100 92 GLIIVWMLYKCN 103 (110)
Q Consensus 92 ~~i~~w~~~~~~ 103 (110)
|.|-+||....+
T Consensus 262 g~i~~w~mn~~r 273 (404)
T KOG1409|consen 262 GGIVVWNMNVKR 273 (404)
T ss_pred CeEEEEecccee
Confidence 999999986543
No 212
>KOG0771|consensus
Probab=98.24 E-value=1e-05 Score=53.41 Aligned_cols=73 Identities=19% Similarity=0.222 Sum_probs=61.5
Q ss_pred CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEe-eccCCCeEEEEEcCCCCeEEEecCCC
Q psy11100 14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL-QGHSGKVRAIIWNEQYEKLTSSDETG 92 (110)
Q Consensus 14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~~~ 92 (110)
...+++++.+++|++++.|..+|.|-+++..+.. .++.. +.|...|..+.|+|+.+.+++.+.+.
T Consensus 281 ~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq--------------~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~ 346 (398)
T KOG0771|consen 281 FKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQ--------------RLQYVKEAHLGFVTGLTFSPDSRYLASVSSDN 346 (398)
T ss_pred cCcceeEEEcCCCcEEEEeccCCcEEEEEeceee--------------eeEeehhhheeeeeeEEEcCCcCcccccccCC
Confidence 3578999999999999999999999999999875 44433 46888999999999999988888888
Q ss_pred cEEEEeCC
Q psy11100 93 LIIVWMLY 100 (110)
Q Consensus 93 ~i~~w~~~ 100 (110)
...+..+.
T Consensus 347 ~~~v~~l~ 354 (398)
T KOG0771|consen 347 EAAVTKLA 354 (398)
T ss_pred ceeEEEEe
Confidence 77776554
No 213
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.21 E-value=1.2e-05 Score=34.60 Aligned_cols=37 Identities=27% Similarity=0.598 Sum_probs=31.9
Q ss_pred eeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEe
Q psy11100 62 MNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWM 98 (110)
Q Consensus 62 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~ 98 (110)
....+..|...+.++.|++.+..+++++.++.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3455667888999999999999999999999999996
No 214
>KOG0649|consensus
Probab=98.19 E-value=2.9e-05 Score=48.68 Aligned_cols=81 Identities=16% Similarity=0.191 Sum_probs=54.2
Q ss_pred eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEee---------ccC-CCeEEEE
Q psy11100 8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQ---------GHS-GKVRAII 77 (110)
Q Consensus 8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-~~v~~~~ 77 (110)
+.+.+|+.++.++.--....-+.+|+.||++++||.++.+ ....+. .|. ..|-+++
T Consensus 150 r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k--------------~v~~ie~yk~~~~lRp~~g~wigala 215 (325)
T KOG0649|consen 150 REYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQK--------------HVSMIEPYKNPNLLRPDWGKWIGALA 215 (325)
T ss_pred EEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccc--------------eeEEeccccChhhcCcccCceeEEEe
Confidence 4556999999999874444457899999999999999875 222222 222 2244444
Q ss_pred EcCCCCeEEEecCCCcEEEEeCCCCCCh
Q psy11100 78 WNEQYEKLTSSDETGLIIVWMLYKCNDD 105 (110)
Q Consensus 78 ~s~~~~~l~s~~~~~~i~~w~~~~~~~~ 105 (110)
- +..++++++ ...+.+|+++.....
T Consensus 216 ~--~edWlvCGg-Gp~lslwhLrsse~t 240 (325)
T KOG0649|consen 216 V--NEDWLVCGG-GPKLSLWHLRSSEST 240 (325)
T ss_pred c--cCceEEecC-CCceeEEeccCCCce
Confidence 4 455666655 567889998876543
No 215
>KOG1188|consensus
Probab=98.18 E-value=8.6e-06 Score=52.81 Aligned_cols=64 Identities=14% Similarity=0.289 Sum_probs=52.9
Q ss_pred CEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC--CCeEEEecCCCcEEEEeCCCCCC
Q psy11100 27 GWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ--YEKLTSSDETGLIIVWMLYKCND 104 (110)
Q Consensus 27 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~s~~~~~~i~~w~~~~~~~ 104 (110)
..++++...|.+++||..++. .+..++++...++.++|..+ ...+.+++.||+|++||++....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~--------------~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e 106 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ--------------LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE 106 (376)
T ss_pred eeEEEEecCCeEEEEeccchh--------------hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh
Confidence 347888889999999999876 67788888888888888763 34489999999999999987543
No 216
>KOG2695|consensus
Probab=98.16 E-value=5.1e-06 Score=54.13 Aligned_cols=87 Identities=16% Similarity=0.118 Sum_probs=64.9
Q ss_pred CCCCceEEEEEec-CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCC--eEEEEEcCCCCeEEEe
Q psy11100 12 PNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGK--VRAIIWNEQYEKLTSS 88 (110)
Q Consensus 12 ~h~~~v~~~~~~p-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~s~ 88 (110)
.|.+.|+++..-. ++++|.+.+.+|.+++||.+.-+ ++. ..++..+|.+. -.-+...+....++++
T Consensus 296 yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K--~~~---------~V~qYeGHvN~~a~l~~~v~~eeg~I~s~ 364 (425)
T KOG2695|consen 296 YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATK--CKK---------SVMQYEGHVNLSAYLPAHVKEEEGSIFSV 364 (425)
T ss_pred EcCcchhhhhhhccccceEeeccCcCceeEeeehhhh--ccc---------ceeeeecccccccccccccccccceEEEc
Confidence 4777787776655 78899999999999999998643 000 25677777543 2334556677778889
Q ss_pred cCCCcEEEEeCCCCCChhhhh
Q psy11100 89 DETGLIIVWMLYKCNDDDEWK 109 (110)
Q Consensus 89 ~~~~~i~~w~~~~~~~~~~~~ 109 (110)
+.|...++|.++.|..+.+++
T Consensus 365 GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 365 GDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred cCeeEEEEEecccCceeeccC
Confidence 999999999999998887764
No 217
>KOG0650|consensus
Probab=98.15 E-value=3.4e-06 Score=58.23 Aligned_cols=73 Identities=21% Similarity=0.389 Sum_probs=63.5
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 91 (110)
...-.|..++.+|.|..|+.|+.|+.++.+|+.-..+ +..++..|...+..++|++.-.++++++.|
T Consensus 605 tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlssk-------------Pyk~lr~H~~avr~Va~H~ryPLfas~sdD 671 (733)
T KOG0650|consen 605 TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSK-------------PYKTLRLHEKAVRSVAFHKRYPLFASGSDD 671 (733)
T ss_pred cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcc-------------hhHHhhhhhhhhhhhhhccccceeeeecCC
Confidence 3445788999999999999999999999999986541 346778899999999999999999999999
Q ss_pred CcEEEE
Q psy11100 92 GLIIVW 97 (110)
Q Consensus 92 ~~i~~w 97 (110)
+++.|+
T Consensus 672 gtv~Vf 677 (733)
T KOG0650|consen 672 GTVIVF 677 (733)
T ss_pred CcEEEE
Confidence 999887
No 218
>KOG4227|consensus
Probab=98.15 E-value=3.6e-05 Score=51.18 Aligned_cols=79 Identities=11% Similarity=0.113 Sum_probs=67.1
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeec--cCCCeEEEEEcCCCCeEEEec
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQG--HSGKVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~s~~ 89 (110)
+|.+.|.|++|.....++.+|..++.|...|+.+.. .+..+.. ..+.|+.+.-+|....|++.+
T Consensus 103 ~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~q--------------si~V~~~~~~~~~VY~m~~~P~DN~~~~~t 168 (609)
T KOG4227|consen 103 PHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQ--------------SIYVANENNNRGDVYHMDQHPTDNTLIVVT 168 (609)
T ss_pred ccccceEEEEEccCCeeEecCCCcceeEeeecccce--------------eeeeecccCcccceeecccCCCCceEEEEe
Confidence 577899999999999999999999999999999875 3444432 245899999999999999999
Q ss_pred CCCcEEEEeCCCCCC
Q psy11100 90 ETGLIIVWMLYKCND 104 (110)
Q Consensus 90 ~~~~i~~w~~~~~~~ 104 (110)
.++.|.+||.+..+.
T Consensus 169 ~~~~V~~~D~Rd~~~ 183 (609)
T KOG4227|consen 169 RAKLVSFIDNRDRQN 183 (609)
T ss_pred cCceEEEEeccCCCC
Confidence 999999999987663
No 219
>KOG1334|consensus
Probab=98.14 E-value=2.5e-06 Score=57.54 Aligned_cols=81 Identities=16% Similarity=0.262 Sum_probs=65.7
Q ss_pred eeccCCCCC--ceEEEE-EecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC
Q psy11100 7 KKIAIPNNT--KVNCLA-WHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE 83 (110)
Q Consensus 7 ~~~~~~h~~--~v~~~~-~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 83 (110)
+..+++|.. .|..+- |.|..+++++|+..|.|.+|+-.... .++...+....|+|+.-+|--.
T Consensus 384 k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e--------------ii~~MegDr~VVNCLEpHP~~P 449 (559)
T KOG1334|consen 384 KRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE--------------IIRFMEGDRHVVNCLEPHPHLP 449 (559)
T ss_pred chhhcccccccccceeeeccCccceEEecCccceEEEEecchhH--------------HHHHhhcccceEeccCCCCCCc
Confidence 445677764 344443 57888999999999999999998876 5666666666899999999999
Q ss_pred eEEEecCCCcEEEEeCCC
Q psy11100 84 KLTSSDETGLIIVWMLYK 101 (110)
Q Consensus 84 ~l~s~~~~~~i~~w~~~~ 101 (110)
.|++++-|..|++|.+-.
T Consensus 450 vLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 450 VLASSGIDHDVKIWTPLT 467 (559)
T ss_pred hhhccCCccceeeecCCc
Confidence 999999999999998844
No 220
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.14 E-value=3.6e-05 Score=52.12 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=51.7
Q ss_pred CCCCceEEEEEecCCCEEEEEecC---CcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEE-E
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDD---GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT-S 87 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s 87 (110)
.+...+.+.+|+|||+.++..+.. ..+.+||+..+. . ..+....+.....+|+|+|..++ +
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~--------------~-~~l~~~~g~~~~~~~SPDG~~la~~ 257 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR--------------R-RVVANFKGSNSAPAWSPDGRTLAVA 257 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC--------------E-EEeecCCCCccceEECCCCCEEEEE
Confidence 455678899999999988876643 358899998765 1 22332334556899999999866 5
Q ss_pred ecCCCcEEEE--eCCCC
Q psy11100 88 SDETGLIIVW--MLYKC 102 (110)
Q Consensus 88 ~~~~~~i~~w--~~~~~ 102 (110)
.+.++...+| |...+
T Consensus 258 ~~~~g~~~Iy~~d~~~~ 274 (427)
T PRK02889 258 LSRDGNSQIYTVNADGS 274 (427)
T ss_pred EccCCCceEEEEECCCC
Confidence 5667765555 44433
No 221
>KOG2315|consensus
Probab=98.13 E-value=2.5e-05 Score=53.47 Aligned_cols=74 Identities=14% Similarity=0.214 Sum_probs=54.3
Q ss_pred CCCceEEEEEecCCCEEEEEec---CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100 13 NNTKVNCLAWHQNQGWIAVGGD---DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 13 h~~~v~~~~~~p~~~~l~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 89 (110)
..++-.++-|+|.|++++.++. .|.+-+||+.... .+..+... ...-+.|+|+|++|.++.
T Consensus 310 ~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K--------------~i~~~~a~--~tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 310 PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK--------------LIAKFKAA--NTTVFEWSPDGEYFLTAT 373 (566)
T ss_pred CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchh--------------hccccccC--CceEEEEcCCCcEEEEEe
Confidence 4577788999999998776654 4689999999855 33333332 234589999999988876
Q ss_pred ------CCCcEEEEeCCCC
Q psy11100 90 ------ETGLIIVWMLYKC 102 (110)
Q Consensus 90 ------~~~~i~~w~~~~~ 102 (110)
-|+.+++|++...
T Consensus 374 TaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 374 TAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred ccccEEecCCeEEEEecCc
Confidence 3677889987543
No 222
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.13 E-value=3.1e-05 Score=52.48 Aligned_cols=78 Identities=18% Similarity=0.158 Sum_probs=53.7
Q ss_pred CCCCceEEEEEecCCCEEEEEecC---CcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEE-E
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDD---GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT-S 87 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s 87 (110)
.+...+...+|+|||+.++..+.. ..+.+|++..+. ...+....+.....+|+|+|..++ +
T Consensus 201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~---------------~~~l~~~~g~~~~~~~SpDG~~l~~~ 265 (433)
T PRK04922 201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ---------------RELVASFRGINGAPSFSPDGRRLALT 265 (433)
T ss_pred cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC---------------EEEeccCCCCccCceECCCCCEEEEE
Confidence 345578889999999988877643 358899987664 122223334445789999999764 4
Q ss_pred ecCCC--cEEEEeCCCCCC
Q psy11100 88 SDETG--LIIVWMLYKCND 104 (110)
Q Consensus 88 ~~~~~--~i~~w~~~~~~~ 104 (110)
.+.++ .|++||+.++..
T Consensus 266 ~s~~g~~~Iy~~d~~~g~~ 284 (433)
T PRK04922 266 LSRDGNPEIYVMDLGSRQL 284 (433)
T ss_pred EeCCCCceEEEEECCCCCe
Confidence 44444 699999987753
No 223
>KOG1272|consensus
Probab=98.12 E-value=9.3e-06 Score=54.63 Aligned_cols=69 Identities=12% Similarity=0.127 Sum_probs=49.4
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 91 (110)
-|.++|.++++.++|+++++.+.|..++|||+..-. -+.+... .-....+++|..|.+ .++..
T Consensus 291 cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~--------------ql~t~~t-p~~a~~ls~SqkglL--A~~~G 353 (545)
T KOG1272|consen 291 CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY--------------QLHTYRT-PHPASNLSLSQKGLL--ALSYG 353 (545)
T ss_pred hcCCCcceEEECCCCcEEeecccccceeEeeecccc--------------ccceeec-CCCccccccccccce--eeecC
Confidence 599999999999999999999999999999999754 1122211 133456677666543 33334
Q ss_pred CcEEEE
Q psy11100 92 GLIIVW 97 (110)
Q Consensus 92 ~~i~~w 97 (110)
..+.+|
T Consensus 354 ~~v~iw 359 (545)
T KOG1272|consen 354 DHVQIW 359 (545)
T ss_pred Ceeeee
Confidence 577788
No 224
>KOG4714|consensus
Probab=98.11 E-value=2.7e-06 Score=53.53 Aligned_cols=73 Identities=21% Similarity=0.324 Sum_probs=60.1
Q ss_pred ceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC-CCeEEEecCCCc
Q psy11100 16 KVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ-YEKLTSSDETGL 93 (110)
Q Consensus 16 ~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~~~~ 93 (110)
.|.+++-+|. .+.+++|..+|.+-+||.+.... +...++.|..+++.+.|+|. +..|.+++.||.
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~-------------p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGs 247 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM-------------PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGS 247 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccc-------------hHHHHHHhhhhhhheeccCCCchheeEecCCCc
Confidence 4888888896 56788999999999999987641 33456789999999999995 566999999999
Q ss_pred EEEEeCCC
Q psy11100 94 IIVWMLYK 101 (110)
Q Consensus 94 i~~w~~~~ 101 (110)
+..||..+
T Consensus 248 lw~wdas~ 255 (319)
T KOG4714|consen 248 LWHWDAST 255 (319)
T ss_pred EEEEcCCC
Confidence 99999774
No 225
>KOG1240|consensus
Probab=98.10 E-value=5.7e-05 Score=56.11 Aligned_cols=83 Identities=17% Similarity=0.181 Sum_probs=61.7
Q ss_pred CCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100 12 PNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE 90 (110)
Q Consensus 12 ~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 90 (110)
.|.+.+..++.+++ +.++++|+.||+|++|+..+.... . .......++......+..+.+-+.+..++.++.
T Consensus 1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~---~----~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~ 1118 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE---G----GSARSELTYSPEGSRVEKVTMCGNGDQFAVSTK 1118 (1431)
T ss_pred hccccccceeecCCCCceEEEecCCceEEEeeehhhhcC---c----ceeeeeEEEeccCCceEEEEeccCCCeEEEEcC
Confidence 36777778888776 589999999999999999875411 0 111122334435677888888888999999999
Q ss_pred CCcEEEEeCCC
Q psy11100 91 TGLIIVWMLYK 101 (110)
Q Consensus 91 ~~~i~~w~~~~ 101 (110)
||.|.+.++..
T Consensus 1119 DG~v~~~~id~ 1129 (1431)
T KOG1240|consen 1119 DGSVRVLRIDH 1129 (1431)
T ss_pred CCeEEEEEccc
Confidence 99999998764
No 226
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.10 E-value=8.5e-05 Score=50.41 Aligned_cols=77 Identities=17% Similarity=0.132 Sum_probs=51.6
Q ss_pred CCCceEEEEEecCCCEEEEEec---CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe-
Q psy11100 13 NNTKVNCLAWHQNQGWIAVGGD---DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS- 88 (110)
Q Consensus 13 h~~~v~~~~~~p~~~~l~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~- 88 (110)
+...+...+|+|||+.++..+. +..+.++++..+. ...+......+...+|+|+|..++..
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~---------------~~~l~~~~~~~~~~~~SPDG~~La~~~ 261 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA---------------VRQVASFPRHNGAPAFSPDGSKLAFAL 261 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC---------------eEEccCCCCCcCCeEECCCCCEEEEEE
Confidence 4457889999999998876542 3468888887654 11222222334468999999987654
Q ss_pred cCCC--cEEEEeCCCCCC
Q psy11100 89 DETG--LIIVWMLYKCND 104 (110)
Q Consensus 89 ~~~~--~i~~w~~~~~~~ 104 (110)
+.++ .|.+||+.++..
T Consensus 262 ~~~g~~~I~~~d~~tg~~ 279 (429)
T PRK03629 262 SKTGSLNLYVMDLASGQI 279 (429)
T ss_pred cCCCCcEEEEEECCCCCE
Confidence 3344 588899987653
No 227
>KOG2139|consensus
Probab=98.10 E-value=6.9e-05 Score=49.29 Aligned_cols=89 Identities=20% Similarity=0.326 Sum_probs=56.7
Q ss_pred CCceEEEEEecCC-CEEEEEecCCcEEEEEcCCCCCcCCccc-ccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec-C
Q psy11100 14 NTKVNCLAWHQNQ-GWIAVGGDDGLLKVLKLDTGKESTGQVA-AANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD-E 90 (110)
Q Consensus 14 ~~~v~~~~~~p~~-~~l~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~ 90 (110)
+-.|.|++|-|.+ ..++.|+. +-+++|............+ -..... .+....+| ..|.+++|++||..+++++ .
T Consensus 140 QrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~-qvl~~pgh-~pVtsmqwn~dgt~l~tAS~g 216 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHL-QVLQDPGH-NPVTSMQWNEDGTILVTASFG 216 (445)
T ss_pred hcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccch-hheeCCCC-ceeeEEEEcCCCCEEeecccC
Confidence 4579999999964 45666665 4589998764320000000 000000 11222333 7899999999999998887 4
Q ss_pred CCcEEEEeCCCCCCh
Q psy11100 91 TGLIIVWMLYKCNDD 105 (110)
Q Consensus 91 ~~~i~~w~~~~~~~~ 105 (110)
+..|.+||+.++..+
T Consensus 217 sssi~iWdpdtg~~~ 231 (445)
T KOG2139|consen 217 SSSIMIWDPDTGQKI 231 (445)
T ss_pred cceEEEEcCCCCCcc
Confidence 678999999988754
No 228
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.08 E-value=9.3e-05 Score=50.02 Aligned_cols=78 Identities=22% Similarity=0.242 Sum_probs=52.5
Q ss_pred CCCCceEEEEEecCCCEEEEEecC---CcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEE-E
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDD---GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT-S 87 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s 87 (110)
.+...+....|+|||+.|+..+.. ..+.+|++..+. ...+....+.+...+|+|+|+.++ +
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~---------------~~~l~~~~g~~~~~~~SpDG~~la~~ 260 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR---------------REQITNFEGLNGAPAWSPDGSKLAFV 260 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC---------------EEEccCCCCCcCCeEECCCCCEEEEE
Confidence 345677889999999988776543 358888887664 122222233445689999999866 4
Q ss_pred ecCCC--cEEEEeCCCCCC
Q psy11100 88 SDETG--LIIVWMLYKCND 104 (110)
Q Consensus 88 ~~~~~--~i~~w~~~~~~~ 104 (110)
...++ .|.++|+.++..
T Consensus 261 ~~~~g~~~Iy~~d~~~~~~ 279 (430)
T PRK00178 261 LSKDGNPEIYVMDLASRQL 279 (430)
T ss_pred EccCCCceEEEEECCCCCe
Confidence 44444 688889887653
No 229
>KOG1963|consensus
Probab=98.08 E-value=4e-05 Score=54.65 Aligned_cols=74 Identities=22% Similarity=0.339 Sum_probs=61.3
Q ss_pred CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCC
Q psy11100 13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETG 92 (110)
Q Consensus 13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~ 92 (110)
|..+|.+++|+++|.+|.+|+..|.+.+|...++. .+-+..-.+.|..+.+|||+...+....|+
T Consensus 250 H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~---------------kqfLPRLgs~I~~i~vS~ds~~~sl~~~DN 314 (792)
T KOG1963|consen 250 HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK---------------KQFLPRLGSPILHIVVSPDSDLYSLVLEDN 314 (792)
T ss_pred cccccceeEEecCCceEeecccceEEEEEeecCCC---------------cccccccCCeeEEEEEcCCCCeEEEEecCc
Confidence 66899999999999999999999999999998875 112233467889999999999988888899
Q ss_pred cEEEEeCCC
Q psy11100 93 LIIVWMLYK 101 (110)
Q Consensus 93 ~i~~w~~~~ 101 (110)
.|.+....+
T Consensus 315 qI~li~~~d 323 (792)
T KOG1963|consen 315 QIHLIKASD 323 (792)
T ss_pred eEEEEeccc
Confidence 988776543
No 230
>KOG4547|consensus
Probab=98.05 E-value=4.7e-05 Score=52.24 Aligned_cols=82 Identities=13% Similarity=-0.026 Sum_probs=70.9
Q ss_pred CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100 11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE 90 (110)
Q Consensus 11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 90 (110)
..|.+.|.++.++.+-.++-+++.|+.+..|+..... .+...+.....+.+++.+|||..+++++
T Consensus 99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~--------------~~~~~~~~~~~~~sl~is~D~~~l~~as- 163 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV--------------IIRIWKEQKPLVSSLCISPDGKILLTAS- 163 (541)
T ss_pred CCCCCcceeeecccccCceEecCCceeEEEEecccce--------------eeeeeccCCCccceEEEcCCCCEEEecc-
Confidence 4789999999999988889999999999999999876 6677777888899999999999888775
Q ss_pred CCcEEEEeCCCCCChhhh
Q psy11100 91 TGLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 91 ~~~i~~w~~~~~~~~~~~ 108 (110)
++|.+||++++..++.+
T Consensus 164 -~~ik~~~~~~kevv~~f 180 (541)
T KOG4547|consen 164 -RQIKVLDIETKEVVITF 180 (541)
T ss_pred -ceEEEEEccCceEEEEe
Confidence 78999999998876643
No 231
>KOG2321|consensus
Probab=98.05 E-value=4.6e-05 Score=52.66 Aligned_cols=83 Identities=17% Similarity=0.378 Sum_probs=61.9
Q ss_pred CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeecc-----CCCeEEEEEcCCCCeEEE
Q psy11100 13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH-----SGKVRAIIWNEQYEKLTS 87 (110)
Q Consensus 13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~s 87 (110)
..+.+.++..++...++++|..+|.|..||..... .++... .......| .-.|+.+.|+.+|-.++.
T Consensus 174 ~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks-rv~~l~-------~~~~v~s~pg~~~~~svTal~F~d~gL~~aV 245 (703)
T KOG2321|consen 174 DSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS-RVGTLD-------AASSVNSHPGGDAAPSVTALKFRDDGLHVAV 245 (703)
T ss_pred ccccceeeeecCccceEEecccCceEEEecchhhh-hheeee-------cccccCCCccccccCcceEEEecCCceeEEe
Confidence 34789999999999999999999999999987643 011110 11111112 234899999999989999
Q ss_pred ecCCCcEEEEeCCCCC
Q psy11100 88 SDETGLIIVWMLYKCN 103 (110)
Q Consensus 88 ~~~~~~i~~w~~~~~~ 103 (110)
|..+|.+.++|++..+
T Consensus 246 Gts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 246 GTSTGSVLIYDLRASK 261 (703)
T ss_pred eccCCcEEEEEcccCC
Confidence 9999999999998754
No 232
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.98 E-value=0.00018 Score=48.27 Aligned_cols=76 Identities=20% Similarity=0.155 Sum_probs=52.9
Q ss_pred CCCceEEEEEecCCCEEEEEecC---CcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEE-Ee
Q psy11100 13 NNTKVNCLAWHQNQGWIAVGGDD---GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT-SS 88 (110)
Q Consensus 13 h~~~v~~~~~~p~~~~l~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~ 88 (110)
+...+....|+|+|+.++..... ..+++|++..+. ...+..+...+..++|+|+|..++ +.
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~---------------~~~~~~~~~~~~~~~~spDg~~l~~~~ 252 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ---------------REKVASFPGMNGAPAFSPDGSKLAVSL 252 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC---------------EEEeecCCCCccceEECCCCCEEEEEE
Confidence 44567788999999998877643 368899988764 122333445566789999998765 44
Q ss_pred cCC--CcEEEEeCCCCC
Q psy11100 89 DET--GLIIVWMLYKCN 103 (110)
Q Consensus 89 ~~~--~~i~~w~~~~~~ 103 (110)
+.+ ..|++|++.++.
T Consensus 253 ~~~~~~~i~~~d~~~~~ 269 (417)
T TIGR02800 253 SKDGNPDIYVMDLDGKQ 269 (417)
T ss_pred CCCCCccEEEEECCCCC
Confidence 433 458889988764
No 233
>KOG0280|consensus
Probab=97.98 E-value=8.3e-05 Score=47.65 Aligned_cols=78 Identities=15% Similarity=0.123 Sum_probs=59.9
Q ss_pred CCCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEE-eeccCCCeEEEEEcCC-CCeEEE
Q psy11100 11 IPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQS-LQGHSGKVRAIIWNEQ-YEKLTS 87 (110)
Q Consensus 11 ~~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~-~~~l~s 87 (110)
.+|.-+....+|+-. .+.+.+|+.|+.+..||++... ..+.. .+.|...|.++.-||- +..+++
T Consensus 162 k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-------------~~i~~n~kvH~~GV~SI~ss~~~~~~I~T 228 (339)
T KOG0280|consen 162 KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-------------TFIWHNSKVHTSGVVSIYSSPPKPTYIAT 228 (339)
T ss_pred cccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-------------ceeeecceeeecceEEEecCCCCCceEEE
Confidence 367778888888764 5678999999999999999432 02222 4557788888888764 556999
Q ss_pred ecCCCcEEEEeCCC
Q psy11100 88 SDETGLIIVWMLYK 101 (110)
Q Consensus 88 ~~~~~~i~~w~~~~ 101 (110)
|+.|-.|++||.++
T Consensus 229 GsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 229 GSYDECIRVLDTRN 242 (339)
T ss_pred eccccceeeeehhc
Confidence 99999999999884
No 234
>KOG4640|consensus
Probab=97.96 E-value=8.5e-05 Score=51.77 Aligned_cols=77 Identities=16% Similarity=0.217 Sum_probs=63.3
Q ss_pred ceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeE-EEEEcCCCCeEEEecCCCcE
Q psy11100 16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVR-AIIWNEQYEKLTSSDETGLI 94 (110)
Q Consensus 16 ~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~s~~~~~~i 94 (110)
.+.-+.|+|.-.++|.+..+|.+-+.++...+ +-++.-+...+. +++|.|||..++-+-.||+|
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n~qR---------------lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I 86 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLNWQR---------------LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTI 86 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEeccce---------------eEeccCCCCccceeeeecCCCCEEEEEecCCeE
Confidence 56678999999999999999999888888543 455555555555 99999999999999999999
Q ss_pred EEEeCCCCCChhh
Q psy11100 95 IVWMLYKCNDDDE 107 (110)
Q Consensus 95 ~~w~~~~~~~~~~ 107 (110)
.+.|++++-.+..
T Consensus 87 ~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 87 RLHDVEKGGRLVS 99 (665)
T ss_pred EEEEccCCCceec
Confidence 9999998876543
No 235
>KOG1645|consensus
Probab=97.96 E-value=4.7e-05 Score=50.56 Aligned_cols=77 Identities=12% Similarity=0.250 Sum_probs=61.9
Q ss_pred CCCCceEEEEEecCCC-EEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEec
Q psy11100 12 PNNTKVNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSSD 89 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~ 89 (110)
.+...|..++|+|..+ ++..++.+..+++.|+.+.. ....+..+ ..+.+++|.-+..+ +..|.
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~--------------~vssy~a~-~~~wSC~wDlde~h~IYaGl 255 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC--------------VVSSYIAY-NQIWSCCWDLDERHVIYAGL 255 (463)
T ss_pred ccchhhhhhccCccccceeeeeccCceEEEEecccce--------------eeeheecc-CCceeeeeccCCcceeEEec
Confidence 4666799999999877 68888999999999999876 34444444 78899999988777 66677
Q ss_pred CCCcEEEEeCCCCC
Q psy11100 90 ETGLIIVWMLYKCN 103 (110)
Q Consensus 90 ~~~~i~~w~~~~~~ 103 (110)
.+|.|.++|++...
T Consensus 256 ~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 256 QNGMVLVYDMRQPE 269 (463)
T ss_pred cCceEEEEEccCCC
Confidence 89999999998643
No 236
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.93 E-value=0.00021 Score=48.57 Aligned_cols=74 Identities=14% Similarity=0.209 Sum_probs=48.0
Q ss_pred CceEEEEEecCCCEEEEE-ecCC--cEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC-
Q psy11100 15 TKVNCLAWHQNQGWIAVG-GDDG--LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE- 90 (110)
Q Consensus 15 ~~v~~~~~~p~~~~l~~~-~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~- 90 (110)
+.+....|+|||+.|+.. +.++ .+.+||+..+. ...+..+...+....|+|+|+.++..+.
T Consensus 243 ~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~---------------~~~lt~~~~~~~~~~wSPDG~~I~f~s~~ 307 (429)
T PRK03629 243 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ---------------IRQVTDGRSNNTEPTWFPDSQNLAYTSDQ 307 (429)
T ss_pred CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC---------------EEEccCCCCCcCceEECCCCCEEEEEeCC
Confidence 345568999999987754 4444 48888887654 2233333345678999999998765554
Q ss_pred CCc--EEEEeCCCCC
Q psy11100 91 TGL--IIVWMLYKCN 103 (110)
Q Consensus 91 ~~~--i~~w~~~~~~ 103 (110)
++. |..+|+.++.
T Consensus 308 ~g~~~Iy~~d~~~g~ 322 (429)
T PRK03629 308 AGRPQVYKVNINGGA 322 (429)
T ss_pred CCCceEEEEECCCCC
Confidence 344 5555666553
No 237
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.91 E-value=0.00029 Score=48.12 Aligned_cols=80 Identities=13% Similarity=0.136 Sum_probs=64.9
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 91 (110)
+.-+.|.++..+|+|.+++.+.....+.+.|+.++. ....-+...+.|..+.|+|++++++-+--+
T Consensus 399 ~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn--------------v~~idkS~~~lItdf~~~~nsr~iAYafP~ 464 (668)
T COG4946 399 KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN--------------VRLIDKSEYGLITDFDWHPNSRWIAYAFPE 464 (668)
T ss_pred CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC--------------eeEecccccceeEEEEEcCCceeEEEecCc
Confidence 345789999999999999999988899999999887 333334556889999999999999988765
Q ss_pred C----cEEEEeCCCCCCh
Q psy11100 92 G----LIIVWMLYKCNDD 105 (110)
Q Consensus 92 ~----~i~~w~~~~~~~~ 105 (110)
| .|+++|+..++..
T Consensus 465 gy~tq~Iklydm~~~Kiy 482 (668)
T COG4946 465 GYYTQSIKLYDMDGGKIY 482 (668)
T ss_pred ceeeeeEEEEecCCCeEE
Confidence 5 4889998877653
No 238
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.91 E-value=0.00015 Score=49.20 Aligned_cols=70 Identities=17% Similarity=0.320 Sum_probs=47.5
Q ss_pred ceEEEEEecCCCEEEEEe-cCCcEEEE--EcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe-cCC
Q psy11100 16 KVNCLAWHQNQGWIAVGG-DDGLLKVL--KLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS-DET 91 (110)
Q Consensus 16 ~v~~~~~~p~~~~l~~~~-~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~~ 91 (110)
....++|+|||+.|+.+. .++...+| |+.... ...+..+...+....|+|+|+.++.+ +.+
T Consensus 249 ~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~---------------~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~ 313 (429)
T PRK01742 249 HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT---------------PSQLTSGAGNNTEPSWSPDGQSILFTSDRS 313 (429)
T ss_pred ccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC---------------eEeeccCCCCcCCEEECCCCCEEEEEECCC
Confidence 344689999999887764 67776665 444432 23344455567789999999986644 456
Q ss_pred CcEEEEeCC
Q psy11100 92 GLIIVWMLY 100 (110)
Q Consensus 92 ~~i~~w~~~ 100 (110)
+...+|++.
T Consensus 314 g~~~I~~~~ 322 (429)
T PRK01742 314 GSPQVYRMS 322 (429)
T ss_pred CCceEEEEE
Confidence 777777654
No 239
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.90 E-value=3.6e-05 Score=32.94 Aligned_cols=31 Identities=23% Similarity=0.446 Sum_probs=28.5
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEE
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLK 42 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~ 42 (110)
.|...+.++.|++++..+++++.|+.+++|+
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 10 GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 6788999999999999999999999999985
No 240
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.87 E-value=0.00025 Score=48.49 Aligned_cols=75 Identities=16% Similarity=0.076 Sum_probs=48.7
Q ss_pred CCceEEEEEecCCCEEEEEec-CC--cEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE-ec
Q psy11100 14 NTKVNCLAWHQNQGWIAVGGD-DG--LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS-SD 89 (110)
Q Consensus 14 ~~~v~~~~~~p~~~~l~~~~~-~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-~~ 89 (110)
...+....|+|||+.++..+. ++ .+.++|+..+. . ..+....+.....+|+|+|+.++. .+
T Consensus 217 ~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~--------------~-~~lt~~~g~~~~~~wSPDG~~La~~~~ 281 (448)
T PRK04792 217 PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV--------------R-EKVTSFPGINGAPRFSPDGKKLALVLS 281 (448)
T ss_pred CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC--------------e-EEecCCCCCcCCeeECCCCCEEEEEEe
Confidence 345678899999998877653 33 47778887654 1 112222223346899999998664 44
Q ss_pred CCC--cEEEEeCCCCC
Q psy11100 90 ETG--LIIVWMLYKCN 103 (110)
Q Consensus 90 ~~~--~i~~w~~~~~~ 103 (110)
.++ .|+++|+.++.
T Consensus 282 ~~g~~~Iy~~dl~tg~ 297 (448)
T PRK04792 282 KDGQPEIYVVDIATKA 297 (448)
T ss_pred CCCCeEEEEEECCCCC
Confidence 455 47788887665
No 241
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.85 E-value=0.00027 Score=47.19 Aligned_cols=74 Identities=20% Similarity=0.279 Sum_probs=52.9
Q ss_pred EEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec-CCCcEEE
Q psy11100 18 NCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD-ETGLIIV 96 (110)
Q Consensus 18 ~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~~~~i~~ 96 (110)
..+.++|||+++...+.|+.+.++|+.+.. ...++.. ......+++|++|++++.++ .++.+.+
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~--------------~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v 104 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGK--------------VVATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSV 104 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSS--------------EEEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEE
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCccc--------------EEEEEec-CCCcceEEEcCCCCEEEEEecCCCceeE
Confidence 346789999998888999999999999886 5555543 23457899999999976555 6889999
Q ss_pred EeCCCCCChh
Q psy11100 97 WMLYKCNDDD 106 (110)
Q Consensus 97 w~~~~~~~~~ 106 (110)
+|.++.+.+.
T Consensus 105 ~D~~tle~v~ 114 (369)
T PF02239_consen 105 IDAETLEPVK 114 (369)
T ss_dssp EETTT--EEE
T ss_pred ecccccccee
Confidence 9988765543
No 242
>KOG4547|consensus
Probab=97.79 E-value=0.00039 Score=47.94 Aligned_cols=75 Identities=20% Similarity=0.298 Sum_probs=60.0
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC-----CCeEE
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ-----YEKLT 86 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~ 86 (110)
..+..+..++.+|||..+++++ +.+++||+.+.. ...++.+|.+.|++++|--. |.++.
T Consensus 142 ~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~ke--------------vv~~ftgh~s~v~t~~f~~~~~g~~G~~vL 205 (541)
T KOG4547|consen 142 EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKE--------------VVITFTGHGSPVRTLSFTTLIDGIIGKYVL 205 (541)
T ss_pred cCCCccceEEEcCCCCEEEecc--ceEEEEEccCce--------------EEEEecCCCcceEEEEEEEeccccccceee
Confidence 4556788899999999888876 689999999987 78999999999999999766 66654
Q ss_pred E-ecCCCcEEEEeCCCC
Q psy11100 87 S-SDETGLIIVWMLYKC 102 (110)
Q Consensus 87 s-~~~~~~i~~w~~~~~ 102 (110)
+ ...+.-+.+|-..+.
T Consensus 206 ssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 206 SSAAAERGITVWVVEKE 222 (541)
T ss_pred eccccccceeEEEEEcc
Confidence 4 445666778876653
No 243
>KOG4190|consensus
Probab=97.77 E-value=4.4e-05 Score=52.94 Aligned_cols=90 Identities=16% Similarity=0.200 Sum_probs=66.9
Q ss_pred cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100 10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 89 (110)
..+|+..|..++--.+.+-+++++.|.+|++|.++...+..+.. .+-.+...|+..|.++.|-.+-+.++++
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~ts-------aCQfTY~aHkk~i~~igfL~~lr~i~Sc- 802 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTS-------ACQFTYQAHKKPIHDIGFLADLRSIASC- 802 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccc-------eeeeEhhhccCcccceeeeeccceeeec-
Confidence 34888888887665566668899999999999998654221110 1446677899999999998877777766
Q ss_pred CCCcEEEEeCCCCCChhhh
Q psy11100 90 ETGLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 90 ~~~~i~~w~~~~~~~~~~~ 108 (110)
|+-|.+||+--|+.+.+|
T Consensus 803 -D~giHlWDPFigr~Laq~ 820 (1034)
T KOG4190|consen 803 -DGGIHLWDPFIGRLLAQM 820 (1034)
T ss_pred -cCcceeecccccchhHhh
Confidence 688999998877766544
No 244
>KOG1517|consensus
Probab=97.75 E-value=0.00043 Score=51.22 Aligned_cols=83 Identities=20% Similarity=0.162 Sum_probs=62.0
Q ss_pred ccCCCCCceEEEEEec-CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCC--eEEEEEcCCCCe-
Q psy11100 9 IAIPNNTKVNCLAWHQ-NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGK--VRAIIWNEQYEK- 84 (110)
Q Consensus 9 ~~~~h~~~v~~~~~~p-~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~s~~~~~- 84 (110)
++.+-..-++++.-+. .|+.+++|..||.|++||.+-.. . . ......+.|+.. |..+.+.+.|-.
T Consensus 1203 iP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~----~-----d--s~v~~~R~h~~~~~Iv~~slq~~G~~e 1271 (1387)
T KOG1517|consen 1203 IPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAP----P-----D--SLVCVYREHNDVEPIVHLSLQRQGLGE 1271 (1387)
T ss_pred cccCCCccceeecccccCCceEEEeecCCceEEeecccCC----c-----c--ccceeecccCCcccceeEEeecCCCcc
Confidence 4444445566665544 47889999999999999987543 0 0 134566777766 999999887776
Q ss_pred EEEecCCCcEEEEeCCCC
Q psy11100 85 LTSSDETGLIIVWMLYKC 102 (110)
Q Consensus 85 l~s~~~~~~i~~w~~~~~ 102 (110)
+++++.+|.|++||++..
T Consensus 1272 lvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1272 LVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred eeeeccCCeEEEEecccC
Confidence 999999999999999874
No 245
>KOG0974|consensus
Probab=97.75 E-value=0.00022 Score=51.94 Aligned_cols=69 Identities=20% Similarity=0.226 Sum_probs=58.0
Q ss_pred ecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCC
Q psy11100 23 HQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKC 102 (110)
Q Consensus 23 ~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~ 102 (110)
+++.-++++|+.-+.+.+|+..... ....+.+|.+.+..+.|+.+|..+++++.|.++++|++.+.
T Consensus 142 s~~~~~i~~gsv~~~iivW~~~~dn--------------~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~ 207 (967)
T KOG0974|consen 142 SAEELYIASGSVFGEIIVWKPHEDN--------------KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSR 207 (967)
T ss_pred cCcEEEEEeccccccEEEEeccccC--------------CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccc
Confidence 5555578899999999999988443 11257899999999999999999999999999999999987
Q ss_pred CCh
Q psy11100 103 NDD 105 (110)
Q Consensus 103 ~~~ 105 (110)
+..
T Consensus 208 ~~~ 210 (967)
T KOG0974|consen 208 EVL 210 (967)
T ss_pred ccc
Confidence 754
No 246
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.72 E-value=0.00058 Score=46.47 Aligned_cols=76 Identities=13% Similarity=0.143 Sum_probs=47.7
Q ss_pred ceEEEEEecCCCEEEEEe-cCCcEEEEEc--CCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC-
Q psy11100 16 KVNCLAWHQNQGWIAVGG-DDGLLKVLKL--DTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET- 91 (110)
Q Consensus 16 ~v~~~~~~p~~~~l~~~~-~~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~- 91 (110)
.....+|+|||+.|+..+ .++...+|.. .... + ....+......+....|||+|+.++....+
T Consensus 282 ~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g---~----------~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~ 348 (428)
T PRK01029 282 TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG---Q----------SPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK 348 (428)
T ss_pred CcCCeEECCCCCEEEEEECCCCCceEEEEECcccc---c----------ceEEeccCCCCccceeECCCCCEEEEEEcCC
Confidence 345679999999877655 4565555543 3211 0 112233334456788999999987765432
Q ss_pred --CcEEEEeCCCCCC
Q psy11100 92 --GLIIVWMLYKCND 104 (110)
Q Consensus 92 --~~i~~w~~~~~~~ 104 (110)
..|.+||+.++..
T Consensus 349 g~~~I~v~dl~~g~~ 363 (428)
T PRK01029 349 GVRQICVYDLATGRD 363 (428)
T ss_pred CCcEEEEEECCCCCe
Confidence 4688999887653
No 247
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.72 E-value=0.00053 Score=46.61 Aligned_cols=76 Identities=8% Similarity=0.032 Sum_probs=50.2
Q ss_pred CCCceEEEEEecCCCEEE-EEecCCc--EEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100 13 NNTKVNCLAWHQNQGWIA-VGGDDGL--LKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 13 h~~~v~~~~~~p~~~~l~-~~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 89 (110)
+.+.+...+|+|||+.++ +.+.++. +.++|+.... ...+..+........|+|+|+.++..+
T Consensus 244 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~---------------~~~Lt~~~~~~~~~~~spDG~~i~f~s 308 (435)
T PRK05137 244 FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT---------------TTRLTDSPAIDTSPSYSPDGSQIVFES 308 (435)
T ss_pred CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc---------------eEEccCCCCccCceeEcCCCCEEEEEE
Confidence 445667889999998765 4455555 6666776654 233444444556789999999876554
Q ss_pred -CC--CcEEEEeCCCCC
Q psy11100 90 -ET--GLIIVWMLYKCN 103 (110)
Q Consensus 90 -~~--~~i~~w~~~~~~ 103 (110)
.+ ..|+++|+..+.
T Consensus 309 ~~~g~~~Iy~~d~~g~~ 325 (435)
T PRK05137 309 DRSGSPQLYVMNADGSN 325 (435)
T ss_pred CCCCCCeEEEEECCCCC
Confidence 33 357888876553
No 248
>PRK01029 tolB translocation protein TolB; Provisional
Probab=97.72 E-value=0.00079 Score=45.83 Aligned_cols=75 Identities=19% Similarity=0.199 Sum_probs=50.5
Q ss_pred CceEEEEEecCCCEEEEEecC---CcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe-c-
Q psy11100 15 TKVNCLAWHQNQGWIAVGGDD---GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS-D- 89 (110)
Q Consensus 15 ~~v~~~~~~p~~~~l~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~- 89 (110)
..+....|+|||+.++..... ..+.+||+..+. . ..+......+....|+|+|+.++.. .
T Consensus 327 ~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~--------------~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~ 391 (428)
T PRK01029 327 RNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR--------------D-YQLTTSPENKESPSWAIDSLHLVYSAGN 391 (428)
T ss_pred CCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC--------------e-EEccCCCCCccceEECCCCCEEEEEECC
Confidence 456778999999988766543 358888887765 1 2222222345678999999986643 3
Q ss_pred -CCCcEEEEeCCCCCC
Q psy11100 90 -ETGLIIVWMLYKCND 104 (110)
Q Consensus 90 -~~~~i~~w~~~~~~~ 104 (110)
....|.++|+..+..
T Consensus 392 ~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 392 SNESELYLISLITKKT 407 (428)
T ss_pred CCCceEEEEECCCCCE
Confidence 235688888876653
No 249
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.70 E-value=0.00069 Score=44.23 Aligned_cols=79 Identities=10% Similarity=0.160 Sum_probs=50.7
Q ss_pred CceEEEEEecCCCEEEEE-ecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC-CC
Q psy11100 15 TKVNCLAWHQNQGWIAVG-GDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE-TG 92 (110)
Q Consensus 15 ~~v~~~~~~p~~~~l~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-~~ 92 (110)
.....++++|+++++.++ ..++.|.+||+.... ....... ...... .......++|+|+|+++..++. ++
T Consensus 126 ~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g----~l~~~~~---~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~ 197 (330)
T PRK11028 126 EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG----HLVAQEP---AEVTTV-EGAGPRHMVFHPNQQYAYCVNELNS 197 (330)
T ss_pred CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC----cccccCC---CceecC-CCCCCceEEECCCCCEEEEEecCCC
Confidence 345678899999887544 456899999997632 0000000 000111 1234567999999999766664 89
Q ss_pred cEEEEeCCC
Q psy11100 93 LIIVWMLYK 101 (110)
Q Consensus 93 ~i~~w~~~~ 101 (110)
.|.+|++..
T Consensus 198 ~v~v~~~~~ 206 (330)
T PRK11028 198 SVDVWQLKD 206 (330)
T ss_pred EEEEEEEeC
Confidence 999999873
No 250
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.70 E-value=0.00097 Score=45.34 Aligned_cols=75 Identities=12% Similarity=0.002 Sum_probs=47.0
Q ss_pred CceEEEEEecCCCEEEEEe-cCCc--EEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100 15 TKVNCLAWHQNQGWIAVGG-DDGL--LKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 15 ~~v~~~~~~p~~~~l~~~~-~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 91 (110)
+.....+|+|||+.++..+ .++. +.++++..+. ...+..........+|+|+|+.++....+
T Consensus 292 ~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~---------------~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~ 356 (433)
T PRK04922 292 GIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS---------------AERLTFQGNYNARASVSPDGKKIAMVHGS 356 (433)
T ss_pred CCccceEECCCCCEEEEEECCCCCceEEEEECCCCC---------------eEEeecCCCCccCEEECCCCCEEEEEECC
Confidence 3446689999999877665 3444 5555655443 11122222334468999999997765433
Q ss_pred ---CcEEEEeCCCCCC
Q psy11100 92 ---GLIIVWMLYKCND 104 (110)
Q Consensus 92 ---~~i~~w~~~~~~~ 104 (110)
..|.+||+.++..
T Consensus 357 ~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 357 GGQYRIAVMDLSTGSV 372 (433)
T ss_pred CCceeEEEEECCCCCe
Confidence 2588999877653
No 251
>KOG1064|consensus
Probab=97.68 E-value=4.6e-05 Score=58.65 Aligned_cols=71 Identities=15% Similarity=0.307 Sum_probs=56.1
Q ss_pred CCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100 11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE 90 (110)
Q Consensus 11 ~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 90 (110)
.-|.+.++++++-|..+.+++|+.+|.|++||+.... ..++++. +. ....|.+++.
T Consensus 2333 ~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq--------------l~h~~~~---------~~-~~~~f~~~ss 2388 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ--------------LRHTFQA---------LD-TREYFVTGSS 2388 (2439)
T ss_pred eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHH--------------HHHHhhh---------hh-hhheeeccCc
Confidence 5688999999999999999999999999999998754 2233322 33 3455889999
Q ss_pred CCcEEEEeCCCCCCh
Q psy11100 91 TGLIIVWMLYKCNDD 105 (110)
Q Consensus 91 ~~~i~~w~~~~~~~~ 105 (110)
.|.+++|++..-..+
T Consensus 2389 ~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2389 EGNIKIWRLSEFGLL 2403 (2439)
T ss_pred ccceEEEEccccchh
Confidence 999999998765443
No 252
>KOG2315|consensus
Probab=97.67 E-value=0.00093 Score=46.11 Aligned_cols=83 Identities=11% Similarity=0.139 Sum_probs=61.3
Q ss_pred eccCCCCCceEEEEEecCCCE--EEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeE
Q psy11100 8 KIAIPNNTKVNCLAWHQNQGW--IAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKL 85 (110)
Q Consensus 8 ~~~~~h~~~v~~~~~~p~~~~--l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 85 (110)
.......++|.++.|+|+++- ++.|-+--.+-++|++... .+.+ -.+.-+++-|||.|+.+
T Consensus 264 ~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~---------------v~df--~egpRN~~~fnp~g~ii 326 (566)
T KOG2315|consen 264 SVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP---------------VFDF--PEGPRNTAFFNPHGNII 326 (566)
T ss_pred EEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE---------------eEeC--CCCCccceEECCCCCEE
Confidence 455566899999999999864 4555666678899888643 3333 34666789999999997
Q ss_pred EEec---CCCcEEEEeCCCCCChhh
Q psy11100 86 TSSD---ETGLIIVWMLYKCNDDDE 107 (110)
Q Consensus 86 ~s~~---~~~~i~~w~~~~~~~~~~ 107 (110)
+.++ ..|.+-+||+.+.+.+..
T Consensus 327 ~lAGFGNL~G~mEvwDv~n~K~i~~ 351 (566)
T KOG2315|consen 327 LLAGFGNLPGDMEVWDVPNRKLIAK 351 (566)
T ss_pred EEeecCCCCCceEEEeccchhhccc
Confidence 7666 457899999988665543
No 253
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.67 E-value=0.00078 Score=44.00 Aligned_cols=72 Identities=10% Similarity=0.100 Sum_probs=48.0
Q ss_pred EEEEEecCCCEEEEEec-CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec-CCCcEE
Q psy11100 18 NCLAWHQNQGWIAVGGD-DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD-ETGLII 95 (110)
Q Consensus 18 ~~~~~~p~~~~l~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~~~~i~ 95 (110)
..+.++|+++++.++.. ++.+.+|++..... . ......... ......++++|+|++++.+. .+++|.
T Consensus 231 ~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~---~-------~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~ 299 (330)
T PRK11028 231 ADIHITPDGRHLYACDRTASLISVFSVSEDGS---V-------LSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHIS 299 (330)
T ss_pred eeEEECCCCCEEEEecCCCCeEEEEEEeCCCC---e-------EEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEE
Confidence 35889999998888754 67899999865320 0 001111111 12345789999999977655 488999
Q ss_pred EEeCC
Q psy11100 96 VWMLY 100 (110)
Q Consensus 96 ~w~~~ 100 (110)
+|++.
T Consensus 300 v~~~~ 304 (330)
T PRK11028 300 VYEID 304 (330)
T ss_pred EEEEc
Confidence 99764
No 254
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.66 E-value=0.0023 Score=40.92 Aligned_cols=97 Identities=15% Similarity=0.207 Sum_probs=61.5
Q ss_pred CCCceEEEEEecCCCEEEEEec-CC----------cEEEEEcCCCCCcCCccc---------ccccceeeeEEe------
Q psy11100 13 NNTKVNCLAWHQNQGWIAVGGD-DG----------LLKVLKLDTGKESTGQVA---------AANVNLAMNQSL------ 66 (110)
Q Consensus 13 h~~~v~~~~~~p~~~~l~~~~~-~~----------~v~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~------ 66 (110)
+...|.+..++|.-++|..|+. .. -+..|++-...--.++.. ....++..+..+
T Consensus 146 yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~ 225 (282)
T PF15492_consen 146 YPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQ 225 (282)
T ss_pred CCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeecc
Confidence 4568999999999887666543 11 255666543320001000 111122111111
Q ss_pred eccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCChhhhh
Q psy11100 67 QGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEWK 109 (110)
Q Consensus 67 ~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~~~~ 109 (110)
......|..+..||+|+.|++...+|.|.+|++.+-+...+++
T Consensus 226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 1134678999999999999999999999999999877777665
No 255
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.66 E-value=0.001 Score=45.14 Aligned_cols=76 Identities=12% Similarity=0.022 Sum_probs=47.5
Q ss_pred CCCceEEEEEecCCCEEEEEec-CCcEEEEEcC--CCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100 13 NNTKVNCLAWHQNQGWIAVGGD-DGLLKVLKLD--TGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 13 h~~~v~~~~~~p~~~~l~~~~~-~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 89 (110)
+.+......|+|||+.++..+. ++...+|... ... ...+..........+|||+|+.++..+
T Consensus 282 ~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~---------------~~~lt~~g~~~~~~~~SpDG~~Ia~~s 346 (427)
T PRK02889 282 SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA---------------AQRVTFTGSYNTSPRISPDGKLLAYIS 346 (427)
T ss_pred CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc---------------eEEEecCCCCcCceEECCCCCEEEEEE
Confidence 3344566889999998775543 4566666554 222 111111222234578999999987665
Q ss_pred CCC---cEEEEeCCCCC
Q psy11100 90 ETG---LIIVWMLYKCN 103 (110)
Q Consensus 90 ~~~---~i~~w~~~~~~ 103 (110)
.++ .|.+||+.++.
T Consensus 347 ~~~g~~~I~v~d~~~g~ 363 (427)
T PRK02889 347 RVGGAFKLYVQDLATGQ 363 (427)
T ss_pred ccCCcEEEEEEECCCCC
Confidence 443 59999988765
No 256
>KOG4497|consensus
Probab=97.59 E-value=0.00066 Score=44.46 Aligned_cols=74 Identities=19% Similarity=0.278 Sum_probs=55.4
Q ss_pred ceEEEEEecCCCEEEE-EecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEEecCCCc
Q psy11100 16 KVNCLAWHQNQGWIAV-GGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTSSDETGL 93 (110)
Q Consensus 16 ~v~~~~~~p~~~~l~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~~~~ 93 (110)
+|.-+.|..|...+.+ ...++.|.+|++.... ....+......+..+.|||+|++ +.+..-+-.
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe--------------w~ckIdeg~agls~~~WSPdgrhiL~tseF~lr 115 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQPE--------------WYCKIDEGQAGLSSISWSPDGRHILLTSEFDLR 115 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEeecce--------------eEEEeccCCCcceeeeECCCcceEeeeecceeE
Confidence 4555778888766544 4678899999998765 34455555677889999999977 556667889
Q ss_pred EEEEeCCCCC
Q psy11100 94 IIVWMLYKCN 103 (110)
Q Consensus 94 i~~w~~~~~~ 103 (110)
|.+|.+.+.+
T Consensus 116 iTVWSL~t~~ 125 (447)
T KOG4497|consen 116 ITVWSLNTQK 125 (447)
T ss_pred EEEEEeccce
Confidence 9999987654
No 257
>KOG4532|consensus
Probab=97.59 E-value=0.0018 Score=41.46 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=57.9
Q ss_pred eEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEE
Q psy11100 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIV 96 (110)
Q Consensus 17 v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~ 96 (110)
+..++++|+++++++-+....|..|.++...+ .+ .......-++.-.+..|+.....+|.+..||++.+
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se----------y~-~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I 229 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE----------YI-ENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAI 229 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccc----------ee-eeeEecccCCCceeeeeccCcceEEEEecCCcEEE
Confidence 77789999999999998888899888875431 00 11123333455668899999999999999999999
Q ss_pred EeCCCCC
Q psy11100 97 WMLYKCN 103 (110)
Q Consensus 97 w~~~~~~ 103 (110)
||++.-.
T Consensus 230 ~DVR~~~ 236 (344)
T KOG4532|consen 230 YDVRNMA 236 (344)
T ss_pred EEecccc
Confidence 9998644
No 258
>KOG4532|consensus
Probab=97.57 E-value=0.0016 Score=41.60 Aligned_cols=83 Identities=14% Similarity=0.040 Sum_probs=59.7
Q ss_pred CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe--EEEecCC
Q psy11100 14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK--LTSSDET 91 (110)
Q Consensus 14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~--l~s~~~~ 91 (110)
+..-.+..|+.....+|++..||++.+||++.... +.... ..+-..|.+.+..+.|++-|.. |....+-
T Consensus 203 ~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t---pm~~~------sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhf 273 (344)
T KOG4532|consen 203 SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT---PMAEI------SSTRPHHNGAFRVCRFSLYGLLDLLFISEHF 273 (344)
T ss_pred CCCceeeeeccCcceEEEEecCCcEEEEEeccccc---chhhh------cccCCCCCCceEEEEecCCCcceEEEEecCc
Confidence 34556788888888899999999999999997651 11000 1122347899999999987765 4455567
Q ss_pred CcEEEEeCCCCCCh
Q psy11100 92 GLIIVWMLYKCNDD 105 (110)
Q Consensus 92 ~~i~~w~~~~~~~~ 105 (110)
+.+.+.|++++...
T Consensus 274 s~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 274 SRVHVVDTRNYVNH 287 (344)
T ss_pred ceEEEEEcccCcee
Confidence 78889999887654
No 259
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.56 E-value=0.00054 Score=32.19 Aligned_cols=32 Identities=31% Similarity=0.709 Sum_probs=28.8
Q ss_pred CCceEEEEEecCCCEEEEEecCCcEEEEEcCC
Q psy11100 14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45 (110)
Q Consensus 14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~ 45 (110)
.+.|.++.|+|...++|.+..+|.|.++++..
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 35799999999999999999999999999853
No 260
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.54 E-value=0.002 Score=43.32 Aligned_cols=74 Identities=19% Similarity=0.212 Sum_probs=48.7
Q ss_pred CceEEEEEecCCCEEEEEec-CC--cEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100 15 TKVNCLAWHQNQGWIAVGGD-DG--LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 15 ~~v~~~~~~p~~~~l~~~~~-~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 91 (110)
+......|+|+|+.++..+. ++ .+.++++.... ...+..+........|+|+|..++....+
T Consensus 278 ~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~---------------~~~l~~~~~~~~~~~~spdg~~i~~~~~~ 342 (417)
T TIGR02800 278 GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE---------------VRRLTFRGGYNASPSWSPDGDLIAFVHRE 342 (417)
T ss_pred CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---------------EEEeecCCCCccCeEECCCCCEEEEEEcc
Confidence 33446789999998766543 33 46666766543 12233344556678999999998777665
Q ss_pred C---cEEEEeCCCCC
Q psy11100 92 G---LIIVWMLYKCN 103 (110)
Q Consensus 92 ~---~i~~w~~~~~~ 103 (110)
+ .|.+||+.++.
T Consensus 343 ~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 343 GGGFNIAVMDLDGGG 357 (417)
T ss_pred CCceEEEEEeCCCCC
Confidence 4 68888887643
No 261
>KOG1334|consensus
Probab=97.53 E-value=0.0004 Score=47.31 Aligned_cols=93 Identities=18% Similarity=0.198 Sum_probs=67.1
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCc-------------CCccc----------cccc----------
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKES-------------TGQVA----------AANV---------- 58 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~-------------~~~~~----------~~~~---------- 58 (110)
+|.+-|..+.|+..|..+++|+.|..+.+||.....-. .+..+ ....
T Consensus 140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t 219 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET 219 (559)
T ss_pred CCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccc
Confidence 69999999999999999999999999999996543211 01100 0000
Q ss_pred -ceeeeEEeeccCCCeEEEEEcCCCCe-EEEecCCCcEEEEeCCCCCC
Q psy11100 59 -NLAMNQSLQGHSGKVRAIIWNEQYEK-LTSSDETGLIIVWMLYKCND 104 (110)
Q Consensus 59 -~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s~~~~~~i~~w~~~~~~~ 104 (110)
...-...+..|.+.|..++.-|.... |.+++.|+.+.-.|++.+.-
T Consensus 220 ~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~p 267 (559)
T KOG1334|consen 220 GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVP 267 (559)
T ss_pred cceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCc
Confidence 11112334457888999999998887 99999999999999887653
No 262
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.52 E-value=0.0018 Score=43.89 Aligned_cols=74 Identities=16% Similarity=0.197 Sum_probs=47.5
Q ss_pred CceEEEEEecCCCEEEE-EecCC--cEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec-C
Q psy11100 15 TKVNCLAWHQNQGWIAV-GGDDG--LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD-E 90 (110)
Q Consensus 15 ~~v~~~~~~p~~~~l~~-~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~ 90 (110)
+.+....|+|||+.++. ...++ .+.++|+..+. ...+..+........|+|+|..++..+ .
T Consensus 243 g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~---------------~~~lt~~~~~~~~~~~spDg~~i~f~s~~ 307 (430)
T PRK00178 243 GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ---------------LSRVTNHPAIDTEPFWGKDGRTLYFTSDR 307 (430)
T ss_pred CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC---------------eEEcccCCCCcCCeEECCCCCEEEEEECC
Confidence 34556899999998764 44455 47777877654 122333444455688999999865444 3
Q ss_pred CC--cEEEEeCCCCC
Q psy11100 91 TG--LIIVWMLYKCN 103 (110)
Q Consensus 91 ~~--~i~~w~~~~~~ 103 (110)
++ .|+.+++.+++
T Consensus 308 ~g~~~iy~~d~~~g~ 322 (430)
T PRK00178 308 GGKPQIYKVNVNGGR 322 (430)
T ss_pred CCCceEEEEECCCCC
Confidence 33 57777877665
No 263
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.45 E-value=0.00082 Score=31.58 Aligned_cols=34 Identities=18% Similarity=0.444 Sum_probs=29.5
Q ss_pred CCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCC
Q psy11100 70 SGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCND 104 (110)
Q Consensus 70 ~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~ 104 (110)
...|..++|+|...+++.+..+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 356889999999999999999999999999 4443
No 264
>KOG3881|consensus
Probab=97.42 E-value=0.0014 Score=43.54 Aligned_cols=77 Identities=4% Similarity=-0.069 Sum_probs=63.4
Q ss_pred eEEEEEecC--CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100 17 VNCLAWHQN--QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLI 94 (110)
Q Consensus 17 v~~~~~~p~--~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i 94 (110)
++++.|-|. ...++++..-+.|++||....+ .+..++......++++..-|.+..++.+...+.+
T Consensus 205 ~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-------------RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l 271 (412)
T KOG3881|consen 205 ITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR-------------RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQL 271 (412)
T ss_pred eccceecCCCCCceEEEEecceeEEEecCcccC-------------cceeEeccccCcceeeeecCCCcEEEEecccchh
Confidence 455677665 6678999999999999999776 2445666667889999999999999999999999
Q ss_pred EEEeCCCCCChh
Q psy11100 95 IVWMLYKCNDDD 106 (110)
Q Consensus 95 ~~w~~~~~~~~~ 106 (110)
..+|.++++...
T Consensus 272 ~~FD~r~~kl~g 283 (412)
T KOG3881|consen 272 AKFDLRGGKLLG 283 (412)
T ss_pred heecccCceeec
Confidence 999999887543
No 265
>KOG0882|consensus
Probab=97.41 E-value=0.0014 Score=44.54 Aligned_cols=98 Identities=4% Similarity=-0.056 Sum_probs=69.9
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCC-CcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGK-ESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE 90 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 90 (110)
-|.++|.++.+.|-+....+....|.|.-|.....- .+..........-.-+..+........++.|+|+|..+..-+.
T Consensus 142 lH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~ 221 (558)
T KOG0882|consen 142 LHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP 221 (558)
T ss_pred cccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc
Confidence 488999999999999999999999999999888511 0001110000000001122223456678999999999999999
Q ss_pred CCcEEEEeCCCCCChhhhh
Q psy11100 91 TGLIIVWMLYKCNDDDEWK 109 (110)
Q Consensus 91 ~~~i~~w~~~~~~~~~~~~ 109 (110)
|-.|+++++.+|+..+++-
T Consensus 222 DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 222 DRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred ccEEEEEEeccchhhhhhh
Confidence 9999999999999998874
No 266
>KOG2314|consensus
Probab=97.36 E-value=0.00073 Score=46.89 Aligned_cols=74 Identities=12% Similarity=0.179 Sum_probs=53.8
Q ss_pred EEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec--------
Q psy11100 18 NCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD-------- 89 (110)
Q Consensus 18 ~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-------- 89 (110)
+-+.|||.|.+|++....| |.+|.-..-. .++.+ ....|..+.|||....|++-+
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~--------------r~~RF--~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~ 276 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFD--------------RIQRF--YHPGVQFIDFSPNEKYLVTYSPEPIIVEE 276 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHH--------------HHHhc--cCCCceeeecCCccceEEEecCCccccCc
Confidence 3478999999999987655 7778666543 22333 235677889999999888765
Q ss_pred ---CCCcEEEEeCCCCCChhhh
Q psy11100 90 ---ETGLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 90 ---~~~~i~~w~~~~~~~~~~~ 108 (110)
....+++||+++|...+.+
T Consensus 277 ~d~e~~~l~IWDI~tG~lkrsF 298 (698)
T KOG2314|consen 277 DDNEGQQLIIWDIATGLLKRSF 298 (698)
T ss_pred ccCCCceEEEEEccccchhcce
Confidence 2246999999999877654
No 267
>KOG1240|consensus
Probab=97.35 E-value=0.0037 Score=47.10 Aligned_cols=93 Identities=23% Similarity=0.246 Sum_probs=63.3
Q ss_pred CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCc---CCccc-----------------ccccc-eee---------
Q psy11100 13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKES---TGQVA-----------------AANVN-LAM--------- 62 (110)
Q Consensus 13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~---~~~~~-----------------~~~~~-~~~--------- 62 (110)
..+.+.++...+.+..+|.++.||.|.+.+++..... ..+.+ ..... +..
T Consensus 1097 ~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv 1176 (1431)
T KOG1240|consen 1097 EGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIV 1176 (1431)
T ss_pred cCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceE
Confidence 4567888888999999999999999999998762111 00000 00011 000
Q ss_pred -----------eEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCCh
Q psy11100 63 -----------NQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDD 105 (110)
Q Consensus 63 -----------~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~ 105 (110)
........+.|++++.+|.+.+++.|+..|.+.+||++-+--+
T Consensus 1177 ~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i 1230 (1431)
T KOG1240|consen 1177 SWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPI 1230 (1431)
T ss_pred EecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCcee
Confidence 0011122478999999999999999999999999999865433
No 268
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.34 E-value=0.0037 Score=42.85 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=46.4
Q ss_pred ceEEEEEecCCCEEEE-EecCCc--EEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec-CC
Q psy11100 16 KVNCLAWHQNQGWIAV-GGDDGL--LKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD-ET 91 (110)
Q Consensus 16 ~v~~~~~~p~~~~l~~-~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~~ 91 (110)
......|+|||+.++. .+.++. +.++|+..+. ...+..+.......+|+|+|..++..+ .+
T Consensus 263 ~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~---------------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~ 327 (448)
T PRK04792 263 INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA---------------LTRITRHRAIDTEPSWHPDGKSLIFTSERG 327 (448)
T ss_pred CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC---------------eEECccCCCCccceEECCCCCEEEEEECCC
Confidence 3446799999997764 455665 6666776553 223333344556789999999865543 33
Q ss_pred C--cEEEEeCCCCC
Q psy11100 92 G--LIIVWMLYKCN 103 (110)
Q Consensus 92 ~--~i~~w~~~~~~ 103 (110)
+ .|.++|+.+++
T Consensus 328 g~~~Iy~~dl~~g~ 341 (448)
T PRK04792 328 GKPQIYRVNLASGK 341 (448)
T ss_pred CCceEEEEECCCCC
Confidence 3 46666776654
No 269
>KOG1064|consensus
Probab=97.33 E-value=0.00066 Score=52.78 Aligned_cols=95 Identities=12% Similarity=0.163 Sum_probs=66.3
Q ss_pred CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCc---CC--c--------------cc-cccccee---------eeEE
Q psy11100 15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKES---TG--Q--------------VA-AANVNLA---------MNQS 65 (110)
Q Consensus 15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~---~~--~--------------~~-~~~~~~~---------~~~~ 65 (110)
++|+.+.|+-+|.....+..||.+.+|.+....+. +. . .. +...+.- ....
T Consensus 2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v 2331 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLV 2331 (2439)
T ss_pred chhhhhhhcccCCceeeeccCCceeecccCCcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCccccee
Confidence 66777888888998888899999999987643221 10 0 00 0000000 0111
Q ss_pred eeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCChhhhh
Q psy11100 66 LQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEWK 109 (110)
Q Consensus 66 ~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~~~~ 109 (110)
...|.+.+.++++.|..+.+++|+.+|.+++||++..+....+.
T Consensus 2332 ~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2332 HTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred eeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhh
Confidence 25678889999999999999999999999999999877666553
No 270
>KOG2321|consensus
Probab=97.32 E-value=0.00091 Score=46.58 Aligned_cols=64 Identities=19% Similarity=0.319 Sum_probs=50.1
Q ss_pred EEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCChh
Q psy11100 29 IAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDD 106 (110)
Q Consensus 29 l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~ 106 (110)
|..++....|+-+++..+. .+..+....+.++++..++...+|++|+.+|.+.+||.+..+.+.
T Consensus 148 ly~~gsg~evYRlNLEqGr--------------fL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~ 211 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGR--------------FLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVG 211 (703)
T ss_pred EEEeecCcceEEEEccccc--------------cccccccccccceeeeecCccceEEecccCceEEEecchhhhhhe
Confidence 3444445567777887776 455666677899999999999999999999999999998776543
No 271
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.29 E-value=0.01 Score=40.87 Aligned_cols=81 Identities=16% Similarity=0.185 Sum_probs=67.7
Q ss_pred ccCCCCCceEEEEEecCCCEEEEEecCC-cEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100 9 IAIPNNTKVNCLAWHQNQGWIAVGGDDG-LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS 87 (110)
Q Consensus 9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 87 (110)
+.++|.+.|.=..+..+++.++.|..|| .+-++|...+. ...+...-+.|..+..+++|..++.
T Consensus 354 iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e---------------~kr~e~~lg~I~av~vs~dGK~~vv 418 (668)
T COG4946 354 IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE---------------VKRIEKDLGNIEAVKVSPDGKKVVV 418 (668)
T ss_pred EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCce---------------EEEeeCCccceEEEEEcCCCcEEEE
Confidence 4557888888888888888888899888 89999998875 3455566688999999999999999
Q ss_pred ecCCCcEEEEeCCCCCC
Q psy11100 88 SDETGLIIVWMLYKCND 104 (110)
Q Consensus 88 ~~~~~~i~~w~~~~~~~ 104 (110)
+.+...|.+.|+.+|+.
T Consensus 419 aNdr~el~vididngnv 435 (668)
T COG4946 419 ANDRFELWVIDIDNGNV 435 (668)
T ss_pred EcCceEEEEEEecCCCe
Confidence 99999999999998875
No 272
>KOG0322|consensus
Probab=97.27 E-value=0.0016 Score=41.50 Aligned_cols=87 Identities=16% Similarity=0.141 Sum_probs=60.5
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 91 (110)
.|..+|.++.+.+.-..=++|+.+-.+.+|.+.... +. ++......-..-.|..+..-||++.+++++=|
T Consensus 203 sh~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~---gs-------lq~~~e~~lknpGv~gvrIRpD~KIlATAGWD 272 (323)
T KOG0322|consen 203 SHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST---GS-------LQIRKEITLKNPGVSGVRIRPDGKILATAGWD 272 (323)
T ss_pred hccCcceeeeechhhcCCcCCCccccceeeeecccc---Cc-------ccccceEEecCCCccceEEccCCcEEeecccC
Confidence 588899999987743333566666678888887653 01 11111222234567788999999999999999
Q ss_pred CcEEEEeCCCCCChhhh
Q psy11100 92 GLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 92 ~~i~~w~~~~~~~~~~~ 108 (110)
+.|++|..++.+-+--+
T Consensus 273 ~RiRVyswrtl~pLAVL 289 (323)
T KOG0322|consen 273 HRIRVYSWRTLNPLAVL 289 (323)
T ss_pred CcEEEEEeccCCchhhh
Confidence 99999999988765443
No 273
>KOG4497|consensus
Probab=97.24 E-value=0.0019 Score=42.41 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=58.0
Q ss_pred CceEEEEEecCCCEEEEEecC--CcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCC
Q psy11100 15 TKVNCLAWHQNQGWIAVGGDD--GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETG 92 (110)
Q Consensus 15 ~~v~~~~~~p~~~~l~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~ 92 (110)
-.+.-++|++|..++++.... +.+.+||+...+ +.....+...|..+.|.|.-..++.+....
T Consensus 319 ~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~---------------l~avLiQk~piraf~WdP~~prL~vctg~s 383 (447)
T KOG4497|consen 319 CGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK---------------LHAVLIQKHPIRAFEWDPGRPRLVVCTGKS 383 (447)
T ss_pred cccceeeecCCceEEeeecCCCCceEEEEechhhh---------------hhhhhhhccceeEEEeCCCCceEEEEcCCc
Confidence 457779999999999987653 578899998765 344455677899999999888888887788
Q ss_pred cEEEEeCCCCC
Q psy11100 93 LIIVWMLYKCN 103 (110)
Q Consensus 93 ~i~~w~~~~~~ 103 (110)
.+++|.+....
T Consensus 384 rLY~W~psg~~ 394 (447)
T KOG4497|consen 384 RLYFWAPSGPR 394 (447)
T ss_pred eEEEEcCCCce
Confidence 89999876543
No 274
>KOG0309|consensus
Probab=97.16 E-value=0.0015 Score=46.98 Aligned_cols=80 Identities=14% Similarity=0.202 Sum_probs=62.9
Q ss_pred CCCCceEEEEEecCC-CEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC
Q psy11100 12 PNNTKVNCLAWHQNQ-GWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE 90 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~-~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 90 (110)
+|+..++.+.|+|.. ..+++.+.|-.+..||..+.. .+......-......++|+.....+...++
T Consensus 112 ghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~-------------~p~ys~~~w~s~asqVkwnyk~p~vlassh 178 (1081)
T KOG0309|consen 112 GHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH-------------RPFYSTSSWRSAASQVKWNYKDPNVLASSH 178 (1081)
T ss_pred cCccceeccccCCCCCcceeeccccccceeeeccCCC-------------cceeeeecccccCceeeecccCcchhhhcc
Confidence 899999999999974 578999999999999999875 123333333455678999988777777777
Q ss_pred CCcEEEEeCCCCCC
Q psy11100 91 TGLIIVWMLYKCND 104 (110)
Q Consensus 91 ~~~i~~w~~~~~~~ 104 (110)
...+.+||.+.|.-
T Consensus 179 g~~i~vwd~r~gs~ 192 (1081)
T KOG0309|consen 179 GNDIFVWDLRKGST 192 (1081)
T ss_pred CCceEEEeccCCCc
Confidence 88999999998753
No 275
>KOG2079|consensus
Probab=97.15 E-value=0.0044 Score=46.15 Aligned_cols=67 Identities=24% Similarity=0.317 Sum_probs=51.6
Q ss_pred CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccC---CCeEEEEEcCCCCeEEEecC
Q psy11100 14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHS---GKVRAIIWNEQYEKLTSSDE 90 (110)
Q Consensus 14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~s~~~ 90 (110)
+++|++++|+.+|..++.|-.+|.|.+||...++ .++.+..+. ..|..+.+..++..+++++.
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k--------------~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~ 195 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK--------------ILKVITEHGAPVTGVIFVGRTSQNSKLLTSDT 195 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCc--------------ceeeeeecCCccceEEEEEEeCCCcEEEEccC
Confidence 5799999999999999999999999999999876 444444443 34555666666667888888
Q ss_pred CCcE
Q psy11100 91 TGLI 94 (110)
Q Consensus 91 ~~~i 94 (110)
.|.+
T Consensus 196 ~Gsf 199 (1206)
T KOG2079|consen 196 GGSF 199 (1206)
T ss_pred CCce
Confidence 8873
No 276
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.15 E-value=0.0039 Score=41.76 Aligned_cols=66 Identities=15% Similarity=0.100 Sum_probs=47.8
Q ss_pred EEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCChhhhh
Q psy11100 30 AVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEWK 109 (110)
Q Consensus 30 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~~~~ 109 (110)
++-..++.|.+.|..+.. ....+......-..+.++|||+++..++.|+.|.++|+.+++.+.+++
T Consensus 10 V~~~~~~~v~viD~~t~~--------------~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~ 75 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNK--------------VVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK 75 (369)
T ss_dssp EEEGGGTEEEEEETTT-S--------------EEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE
T ss_pred EEecCCCEEEEEECCCCe--------------EEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe
Confidence 455668999999998876 556666543333457899999998878889999999999998776653
No 277
>KOG2041|consensus
Probab=97.14 E-value=0.0018 Score=46.52 Aligned_cols=80 Identities=21% Similarity=0.313 Sum_probs=63.1
Q ss_pred cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeec-cCCCeEEEEEcCCCCeEEEe
Q psy11100 10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQG-HSGKVRAIIWNEQYEKLTSS 88 (110)
Q Consensus 10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~ 88 (110)
..||.+.|..+.|+.+.+.|.++..+|-+.+|-+..+. | ...-+.. ..+.|.++.|+-+|+.++.+
T Consensus 67 LeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgs------------W-~EEMiNnRnKSvV~SmsWn~dG~kIcIv 133 (1189)
T KOG2041|consen 67 LEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGS------------W-CEEMINNRNKSVVVSMSWNLDGTKICIV 133 (1189)
T ss_pred hccCcceEEEEEeccccccccccCCCceEEEEeeeccc------------H-HHHHhhCcCccEEEEEEEcCCCcEEEEE
Confidence 44899999999999999999999999999999998764 1 1111222 34678999999999999888
Q ss_pred cCCCcEEEEeCCCC
Q psy11100 89 DETGLIIVWMLYKC 102 (110)
Q Consensus 89 ~~~~~i~~w~~~~~ 102 (110)
=.||.|.+=.+..+
T Consensus 134 YeDGavIVGsvdGN 147 (1189)
T KOG2041|consen 134 YEDGAVIVGSVDGN 147 (1189)
T ss_pred EccCCEEEEeeccc
Confidence 88988877555433
No 278
>KOG3617|consensus
Probab=97.14 E-value=0.00053 Score=49.93 Aligned_cols=70 Identities=21% Similarity=0.428 Sum_probs=56.9
Q ss_pred eEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEE
Q psy11100 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIV 96 (110)
Q Consensus 17 v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~ 96 (110)
+++++|+|..-.|+.|-..|.+-+|...... .-.....|...+..+.||++|..+.+++.-|.+.+
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e--------------~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~l 127 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE--------------THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHL 127 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCce--------------eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEE
Confidence 4568888887778888888888888777654 23344568889999999999999999999999999
Q ss_pred EeCC
Q psy11100 97 WMLY 100 (110)
Q Consensus 97 w~~~ 100 (110)
|...
T Consensus 128 wr~d 131 (1416)
T KOG3617|consen 128 WRYD 131 (1416)
T ss_pred EEee
Confidence 9765
No 279
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.12 E-value=0.02 Score=38.20 Aligned_cols=78 Identities=14% Similarity=0.131 Sum_probs=55.4
Q ss_pred ceEEEEEecCCCEEEEEec----------CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC-e
Q psy11100 16 KVNCLAWHQNQGWIAVGGD----------DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE-K 84 (110)
Q Consensus 16 ~v~~~~~~p~~~~l~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~ 84 (110)
...-++++|++..+..... .+.|.++|..+.. .+..+.- ...+..++++|++. .
T Consensus 249 g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k--------------vi~~i~v-G~~~~~iavS~Dgkp~ 313 (352)
T TIGR02658 249 GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK--------------RLRKIEL-GHEIDSINVSQDAKPL 313 (352)
T ss_pred cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe--------------EEEEEeC-CCceeeEEECCCCCeE
Confidence 3344889999887666421 1468888887765 4444442 35788999999999 7
Q ss_pred EEEec-CCCcEEEEeCCCCCChhhh
Q psy11100 85 LTSSD-ETGLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 85 l~s~~-~~~~i~~w~~~~~~~~~~~ 108 (110)
+...+ .++.|.+.|..+++.+..+
T Consensus 314 lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 314 LYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEeCCCCCcEEEEECcCCeEEeee
Confidence 66555 6788999999998876654
No 280
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.12 E-value=0.011 Score=44.68 Aligned_cols=87 Identities=11% Similarity=0.048 Sum_probs=55.8
Q ss_pred eEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEE
Q psy11100 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIV 96 (110)
Q Consensus 17 v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~ 96 (110)
...++++++|...++-..++.|++||........... .......--......-.....++++++|+.+++-..++.|++
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG-~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG-TGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec-cCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 3568889999887777888899999987654100000 000000000001112235678999999998888888999999
Q ss_pred EeCCCCCC
Q psy11100 97 WMLYKCND 104 (110)
Q Consensus 97 w~~~~~~~ 104 (110)
||+.++..
T Consensus 885 id~~~~~~ 892 (1057)
T PLN02919 885 LDLNKGEA 892 (1057)
T ss_pred EECCCCcc
Confidence 99988764
No 281
>KOG1517|consensus
Probab=97.11 E-value=0.0071 Score=45.26 Aligned_cols=79 Identities=18% Similarity=0.248 Sum_probs=59.1
Q ss_pred CCCCc--eEEEEEecCCC-EEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeecc---CCCeEEEEEcCCCCeE
Q psy11100 12 PNNTK--VNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH---SGKVRAIIWNEQYEKL 85 (110)
Q Consensus 12 ~h~~~--v~~~~~~p~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l 85 (110)
.|+.. |..+.+.+.|- .|++|+.+|.|++||++....+ ...++..| .+..+++..++....+
T Consensus 1252 ~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e------------~~~~iv~~~~yGs~lTal~VH~hapii 1319 (1387)
T KOG1517|consen 1252 EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKE------------TFLTIVAHWEYGSALTALTVHEHAPII 1319 (1387)
T ss_pred ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccc------------ccceeeeccccCccceeeeeccCCCee
Confidence 57766 88999988664 4999999999999999874210 11222222 3358899999999999
Q ss_pred EEecCCCcEEEEeCCCCC
Q psy11100 86 TSSDETGLIIVWMLYKCN 103 (110)
Q Consensus 86 ~s~~~~~~i~~w~~~~~~ 103 (110)
++|+. +.|.+|++...+
T Consensus 1320 AsGs~-q~ikIy~~~G~~ 1336 (1387)
T KOG1517|consen 1320 ASGSA-QLIKIYSLSGEQ 1336 (1387)
T ss_pred eecCc-ceEEEEecChhh
Confidence 99988 999999986543
No 282
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.09 E-value=0.011 Score=37.95 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=46.2
Q ss_pred EEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeC
Q psy11100 20 LAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWML 99 (110)
Q Consensus 20 ~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~ 99 (110)
++.+.+|+.||.- .|..+.+...+..-. .... ..+..+...-+-..++||||+..++.+...|+|+++|+
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~------si~~---kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl 72 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFS------SIIG---KCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDL 72 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCch------heeE---EEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEec
Confidence 4567788877664 355666655543320 0000 01112222345678999999999999999999999998
Q ss_pred CC
Q psy11100 100 YK 101 (110)
Q Consensus 100 ~~ 101 (110)
-.
T Consensus 73 ~g 74 (282)
T PF15492_consen 73 MG 74 (282)
T ss_pred cc
Confidence 64
No 283
>KOG1354|consensus
Probab=97.07 E-value=0.0041 Score=41.10 Aligned_cols=77 Identities=9% Similarity=0.131 Sum_probs=55.3
Q ss_pred CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeecc------------CCCe---EEEE
Q psy11100 13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH------------SGKV---RAII 77 (110)
Q Consensus 13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v---~~~~ 77 (110)
..+.|..+.|++.|+++++.+. .+|++||+.-... +..+...| .+.| ..++
T Consensus 271 iIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~-------------pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~ 336 (433)
T KOG1354|consen 271 IISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAK-------------PVETYPVHEYLRSKLCSLYENDAIFDKFECS 336 (433)
T ss_pred HhhhhhceEEccCCcEEEEecc-ceeEEEeccccCC-------------cceEEeehHhHHHHHHHHhhccchhheeEEE
Confidence 3467889999999999988653 5899999964331 11222222 2222 4578
Q ss_pred EcCCCCeEEEecCCCcEEEEeCCCCC
Q psy11100 78 WNEQYEKLTSSDETGLIIVWMLYKCN 103 (110)
Q Consensus 78 ~s~~~~~l~s~~~~~~i~~w~~~~~~ 103 (110)
||-++..+.+|+....+++++...|.
T Consensus 337 ~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 337 WSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred EcCCcceEecccccceEEEecCCCCc
Confidence 99999999999999999999966554
No 284
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=97.04 E-value=0.042 Score=36.41 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=51.7
Q ss_pred ceEEEEEecCCCEEEEEec-CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec-CCCc
Q psy11100 16 KVNCLAWHQNQGWIAVGGD-DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD-ETGL 93 (110)
Q Consensus 16 ~v~~~~~~p~~~~l~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~~~~ 93 (110)
....++++|||++|..+.. .+.|.+|++.... +. +...............++++|+|++++.++ .++.
T Consensus 246 ~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~---g~-------l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~ 315 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRGSNSISVFDLDPAT---GT-------LTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNT 315 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECTTTEEEEEEECTTT---TT-------EEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTE
T ss_pred CceeEEEecCCCEEEEEeccCCEEEEEEEecCC---Cc-------eEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCe
Confidence 5788999999998877654 5679999995432 01 112333333345578999999999976665 5678
Q ss_pred EEEEeC--CCCC
Q psy11100 94 IIVWML--YKCN 103 (110)
Q Consensus 94 i~~w~~--~~~~ 103 (110)
|.+|++ .+|.
T Consensus 316 v~vf~~d~~tG~ 327 (345)
T PF10282_consen 316 VSVFDIDPDTGK 327 (345)
T ss_dssp EEEEEEETTTTE
T ss_pred EEEEEEeCCCCc
Confidence 988865 4554
No 285
>KOG1275|consensus
Probab=97.04 E-value=0.0029 Score=46.39 Aligned_cols=68 Identities=15% Similarity=0.123 Sum_probs=55.2
Q ss_pred ecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec---------CCCc
Q psy11100 23 HQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD---------ETGL 93 (110)
Q Consensus 23 ~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~---------~~~~ 93 (110)
..+++.+.+|...|+|.+.|..+.. .+.++..|++.++.+.. .|+.|++++ .|..
T Consensus 184 R~Nnr~lf~G~t~G~V~LrD~~s~~--------------~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~F 247 (1118)
T KOG1275|consen 184 RYNNRNLFCGDTRGTVFLRDPNSFE--------------TIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPF 247 (1118)
T ss_pred EecCcEEEeecccceEEeecCCcCc--------------eeeeeeccccceeeeec--cCCeEEEeecccccccccccch
Confidence 3467889999999999999999876 78999999999977755 889999987 3556
Q ss_pred EEEEeCCCCCChh
Q psy11100 94 IIVWMLYKCNDDD 106 (110)
Q Consensus 94 i~~w~~~~~~~~~ 106 (110)
|.|||++.-+.+.
T Consensus 248 vkVYDLRmmral~ 260 (1118)
T KOG1275|consen 248 VKVYDLRMMRALS 260 (1118)
T ss_pred hhhhhhhhhhccC
Confidence 8899988765543
No 286
>KOG4714|consensus
Probab=96.99 E-value=0.0024 Score=40.65 Aligned_cols=88 Identities=11% Similarity=0.067 Sum_probs=54.4
Q ss_pred ccCCCCCceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcc----------cccccceeeeEEeeccCCCeEEEE
Q psy11100 9 IAIPNNTKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQV----------AAANVNLAMNQSLQGHSGKVRAII 77 (110)
Q Consensus 9 ~~~~h~~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~v~~~~ 77 (110)
++..|+.++..+.|+|. +..|.+++.||++..||.....-..+.. ++....+..-..+......|+++.
T Consensus 218 ~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfD 297 (319)
T KOG4714|consen 218 LLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFD 297 (319)
T ss_pred HHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeee
Confidence 34479999999999994 7789999999999999987421000000 011111111112222333444443
Q ss_pred EcCCCCeEEEecCCCcEEEEe
Q psy11100 78 WNEQYEKLTSSDETGLIIVWM 98 (110)
Q Consensus 78 ~s~~~~~l~s~~~~~~i~~w~ 98 (110)
. .|.-+++++.-+.|++++
T Consensus 298 V--~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 298 V--LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred c--cCceEEeccccceEEEec
Confidence 3 677888998888888764
No 287
>KOG3621|consensus
Probab=96.94 E-value=0.0039 Score=44.38 Aligned_cols=79 Identities=19% Similarity=0.200 Sum_probs=57.3
Q ss_pred CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100 15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLI 94 (110)
Q Consensus 15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i 94 (110)
+.+..+..+++..++|.|+..|.|.++-+.... ++.+......-+.|...|.+++|++++..+.+|++.|.|
T Consensus 77 ~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~--------p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv 148 (726)
T KOG3621|consen 77 GITCVRSVSSVEYLVAAGTASGRVSVFQLNKEL--------PRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKV 148 (726)
T ss_pred ceEEEEEecchhHhhhhhcCCceEEeehhhccC--------CCcceeeccccccCCceEEEEEecccccEEeecCCCceE
Confidence 455567778888888999999999988776532 111111111123367899999999999999999999998
Q ss_pred EEEeCCC
Q psy11100 95 IVWMLYK 101 (110)
Q Consensus 95 ~~w~~~~ 101 (110)
-...+.+
T Consensus 149 ~~~~L~s 155 (726)
T KOG3621|consen 149 VLTELDS 155 (726)
T ss_pred EEEEech
Confidence 8876665
No 288
>KOG2695|consensus
Probab=96.90 E-value=0.0013 Score=43.32 Aligned_cols=81 Identities=23% Similarity=0.217 Sum_probs=59.4
Q ss_pred CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcC-CCCeEEEecCCC
Q psy11100 14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNE-QYEKLTSSDETG 92 (110)
Q Consensus 14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~~~ 92 (110)
.+.|.++.|.-.++++..|+..|.|...|++... + .+..+.+. -.|...|.+++.=. +++.|...+-+|
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rn----q-----G~~~~a~r-lyh~Ssvtslq~Lq~s~q~LmaS~M~g 321 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRN----Q-----GNGWCAQR-LYHDSSVTSLQILQFSQQKLMASDMTG 321 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeecc----c-----CCCcceEE-EEcCcchhhhhhhccccceEeeccCcC
Confidence 3567778888888999999999999999998653 0 11112233 34677777776544 678888999999
Q ss_pred cEEEEeCCCCCC
Q psy11100 93 LIIVWMLYKCND 104 (110)
Q Consensus 93 ~i~~w~~~~~~~ 104 (110)
.|.+||.+-.+.
T Consensus 322 kikLyD~R~~K~ 333 (425)
T KOG2695|consen 322 KIKLYDLRATKC 333 (425)
T ss_pred ceeEeeehhhhc
Confidence 999999886554
No 289
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.86 E-value=0.069 Score=36.53 Aligned_cols=73 Identities=14% Similarity=0.047 Sum_probs=47.1
Q ss_pred ceEEEEEecCCCE-EEEEecC---CcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEE-Eec-
Q psy11100 16 KVNCLAWHQNQGW-IAVGGDD---GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT-SSD- 89 (110)
Q Consensus 16 ~v~~~~~~p~~~~-l~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-s~~- 89 (110)
......|+|||+. ++..+.. ..+.++|+..+. ...+....+......|+|||..++ +.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~---------------~~~lt~~~g~~~~~~~SPDG~~la~~~~~ 253 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK---------------KEKIASSQGMLVVSDVSKDGSKLLLTMAP 253 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc---------------EEEEecCCCcEEeeEECCCCCEEEEEEcc
Confidence 5678999999984 5543333 457788887664 122333344556788999998754 333
Q ss_pred -CCCcEEEEeCCCCC
Q psy11100 90 -ETGLIIVWMLYKCN 103 (110)
Q Consensus 90 -~~~~i~~w~~~~~~ 103 (110)
.+..|.++|+.++.
T Consensus 254 ~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 254 KGQPDIYLYDTNTKT 268 (419)
T ss_pred CCCcEEEEEECCCCc
Confidence 34568788877664
No 290
>KOG0280|consensus
Probab=96.85 E-value=0.012 Score=38.21 Aligned_cols=72 Identities=13% Similarity=0.104 Sum_probs=53.4
Q ss_pred eEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC-eEEEecCCCcEE
Q psy11100 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE-KLTSSDETGLII 95 (110)
Q Consensus 17 v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~~~~i~ 95 (110)
..++.|++.+..++++..+|.+.+-+..... ++..+..+.|.-+.....|+.... .+.+|+.|+.+.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~------------le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~ 191 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMV------------LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLS 191 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceee------------eeecccccccceeeeeeecccCCCceEEecCCCceEE
Confidence 4567778878888888888887754444433 123346788888888888877555 588999999999
Q ss_pred EEeCC
Q psy11100 96 VWMLY 100 (110)
Q Consensus 96 ~w~~~ 100 (110)
.||++
T Consensus 192 ~~D~R 196 (339)
T KOG0280|consen 192 CWDIR 196 (339)
T ss_pred EEEec
Confidence 99998
No 291
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=96.84 E-value=0.021 Score=42.77 Aligned_cols=71 Identities=13% Similarity=0.208 Sum_probs=53.2
Q ss_pred CCCceEEEEEecCCCEEEEEecCCcEEEE----EcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100 13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVL----KLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS 88 (110)
Q Consensus 13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 88 (110)
..+.|..+.+-++...++.+..+|.+-+. +..... ......-...|.+++||||++.++-+
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~---------------~E~VG~vd~GI~a~~WSPD~Ella~v 138 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE---------------IEIVGSVDSGILAASWSPDEELLALV 138 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce---------------eEEEEEEcCcEEEEEECCCcCEEEEE
Confidence 34678889999988878888888888887 333222 22233346789999999999999999
Q ss_pred cCCCcEEEEe
Q psy11100 89 DETGLIIVWM 98 (110)
Q Consensus 89 ~~~~~i~~w~ 98 (110)
+.++++.+.+
T Consensus 139 T~~~~l~~mt 148 (928)
T PF04762_consen 139 TGEGNLLLMT 148 (928)
T ss_pred eCCCEEEEEe
Confidence 8888887764
No 292
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=96.80 E-value=0.021 Score=38.18 Aligned_cols=73 Identities=8% Similarity=-0.101 Sum_probs=52.7
Q ss_pred EecCCCEEEEEec----------CCcEEEEEcCCCCCcCCcccccccceeeeEEeecc-------CCCeEEEEEcCCCCe
Q psy11100 22 WHQNQGWIAVGGD----------DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH-------SGKVRAIIWNEQYEK 84 (110)
Q Consensus 22 ~~p~~~~l~~~~~----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~s~~~~~ 84 (110)
++|||+.+..+.. +..|.+||..+.. ....+..- ......++++|+|++
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~--------------~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~ 118 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL--------------PIADIELPEGPRFLVGTYPWMTSLTPDNKT 118 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc--------------EEeEEccCCCchhhccCccceEEECCCCCE
Confidence 8999987765554 6789999999876 33333321 122347899999998
Q ss_pred EEEec-C-CCcEEEEeCCCCCChhhh
Q psy11100 85 LTSSD-E-TGLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 85 l~s~~-~-~~~i~~w~~~~~~~~~~~ 108 (110)
+.... . +..+.+.|+.+++.+.|+
T Consensus 119 l~V~n~~p~~~V~VvD~~~~kvv~ei 144 (352)
T TIGR02658 119 LLFYQFSPSPAVGVVDLEGKAFVRMM 144 (352)
T ss_pred EEEecCCCCCEEEEEECCCCcEEEEE
Confidence 76555 3 789999999999887664
No 293
>KOG1832|consensus
Probab=96.70 E-value=0.0035 Score=46.23 Aligned_cols=75 Identities=20% Similarity=0.370 Sum_probs=58.8
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 91 (110)
.|++..+|++|+-+.+.|+.|...|.++++++.++. .......|...|..+.=+.+|...++.+..
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~--------------~e~s~ncH~SavT~vePs~dgs~~Ltsss~ 1164 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS--------------MEESVNCHQSAVTLVEPSVDGSTQLTSSSS 1164 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCcc--------------ccccccccccccccccccCCcceeeeeccc
Confidence 577889999999999999999999999999999886 445567788888888888888874444322
Q ss_pred --CcEEEEeCC
Q psy11100 92 --GLIIVWMLY 100 (110)
Q Consensus 92 --~~i~~w~~~ 100 (110)
....+|+..
T Consensus 1165 S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1165 SSPLSALWDAS 1175 (1516)
T ss_pred cCchHHHhccc
Confidence 235577664
No 294
>KOG1409|consensus
Probab=96.69 E-value=0.057 Score=35.88 Aligned_cols=94 Identities=17% Similarity=0.381 Sum_probs=63.6
Q ss_pred ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCC------------------------cCCc---cccccccee
Q psy11100 9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKE------------------------STGQ---VAAANVNLA 61 (110)
Q Consensus 9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~------------------------~~~~---~~~~~~~~~ 61 (110)
.+..|.+.+..+-|+...+++++.+.|..+.-.-.+.+.. ...+ .+..+..+.
T Consensus 109 ~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~ 188 (404)
T KOG1409|consen 109 DYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQ 188 (404)
T ss_pred hhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCc
Confidence 3446888898888888777777776665432111100000 0000 112234455
Q ss_pred eeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCC
Q psy11100 62 MNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKC 102 (110)
Q Consensus 62 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~ 102 (110)
++.++.+|.+.+.+..|.+....+.++..|..+.+||+--+
T Consensus 189 ~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~ 229 (404)
T KOG1409|consen 189 LITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR 229 (404)
T ss_pred eEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC
Confidence 68889999999999999999999999999999999998643
No 295
>KOG4640|consensus
Probab=96.66 E-value=0.0084 Score=42.32 Aligned_cols=35 Identities=26% Similarity=0.565 Sum_probs=30.4
Q ss_pred CCCceE-EEEEecCCCEEEEEecCCcEEEEEcCCCC
Q psy11100 13 NNTKVN-CLAWHQNQGWIAVGGDDGLLKVLKLDTGK 47 (110)
Q Consensus 13 h~~~v~-~~~~~p~~~~l~~~~~~~~v~~~~~~~~~ 47 (110)
+...++ +++|.|||+.++.|-.||++++.|+..+.
T Consensus 60 p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 60 PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence 334454 99999999999999999999999999875
No 296
>KOG1354|consensus
Probab=96.62 E-value=0.02 Score=38.00 Aligned_cols=79 Identities=15% Similarity=0.331 Sum_probs=55.2
Q ss_pred CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeecc------------CCCeEEEEEcCC
Q psy11100 14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH------------SGKVRAIIWNEQ 81 (110)
Q Consensus 14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~~~s~~ 81 (110)
..-+.++.|.-.|++|++|..+|.|.++.-....+ +. +.....++.| ...|+.++|-++
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~--~e-------y~~~t~fqshepEFDYLkSleieEKinkIrw~~~ 95 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK--GE-------YNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDD 95 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccc--cc-------eeeeeeeeccCcccchhhhhhhhhhhhhceecCC
Confidence 35688899999999999999999998875443321 00 0011222222 245788999887
Q ss_pred CCe--EEEecCCCcEEEEeCCC
Q psy11100 82 YEK--LTSSDETGLIIVWMLYK 101 (110)
Q Consensus 82 ~~~--l~s~~~~~~i~~w~~~~ 101 (110)
+.. ++..+.|.+|++|.+..
T Consensus 96 ~n~a~FLlstNdktiKlWKi~e 117 (433)
T KOG1354|consen 96 GNLAEFLLSTNDKTIKLWKIRE 117 (433)
T ss_pred CCccEEEEecCCcceeeeeeec
Confidence 664 77888899999998764
No 297
>KOG3914|consensus
Probab=96.62 E-value=0.018 Score=38.54 Aligned_cols=41 Identities=12% Similarity=0.013 Sum_probs=34.2
Q ss_pred EeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCCh
Q psy11100 65 SLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDD 105 (110)
Q Consensus 65 ~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~ 105 (110)
..-+|-..+..++|+||++++++++.|..|++-.+.....+
T Consensus 146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~I 186 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVI 186 (390)
T ss_pred hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccch
Confidence 34567788999999999999999999999999877655443
No 298
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.60 E-value=0.067 Score=36.60 Aligned_cols=76 Identities=9% Similarity=0.016 Sum_probs=45.1
Q ss_pred CCceEEEEEecCCCEEEEE-ecCC--cEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec-
Q psy11100 14 NTKVNCLAWHQNQGWIAVG-GDDG--LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD- 89 (110)
Q Consensus 14 ~~~v~~~~~~p~~~~l~~~-~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~- 89 (110)
.+......|+|||+.++.. +.++ .+.++++..+. ...+..+........|+|||+.++-.+
T Consensus 232 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~---------------~~~LT~~~~~d~~p~~SPDG~~I~F~Sd 296 (419)
T PRK04043 232 QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT---------------LTQITNYPGIDVNGNFVEDDKRIVFVSD 296 (419)
T ss_pred CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc---------------EEEcccCCCccCccEECCCCCEEEEEEC
Confidence 3445667899999876543 3343 46666766553 122222222233568999999855444
Q ss_pred CCC--cEEEEeCCCCCC
Q psy11100 90 ETG--LIIVWMLYKCND 104 (110)
Q Consensus 90 ~~~--~i~~w~~~~~~~ 104 (110)
..+ .|.++|+.++..
T Consensus 297 r~g~~~Iy~~dl~~g~~ 313 (419)
T PRK04043 297 RLGYPNIFMKKLNSGSV 313 (419)
T ss_pred CCCCceEEEEECCCCCe
Confidence 233 577778876654
No 299
>KOG1912|consensus
Probab=96.54 E-value=0.013 Score=42.59 Aligned_cols=81 Identities=21% Similarity=0.310 Sum_probs=60.0
Q ss_pred CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC-----------
Q psy11100 13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ----------- 81 (110)
Q Consensus 13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~----------- 81 (110)
|.....++.|+|.| +++.|+ ...|.+-|..... .++.+..|...|..+.|.|.
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q--------------~iqsie~h~s~V~~VrWap~~~p~~llS~~~ 77 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQ--------------LIQSIELHQSAVTSVRWAPAPSPRDLLSPSS 77 (1062)
T ss_pred CcccccccccCccc-eEEEec-CceEEEEehhhhh--------------hhhccccCccceeEEEeccCCCchhccCccc
Confidence 33446677888877 455655 4567777877765 67888889999999999872
Q ss_pred CC-eEEEecCCCcEEEEeCCCCCChhhhh
Q psy11100 82 YE-KLTSSDETGLIIVWMLYKCNDDDEWK 109 (110)
Q Consensus 82 ~~-~l~s~~~~~~i~~w~~~~~~~~~~~~ 109 (110)
.. .+++++..|.|.+||+..+..+.++.
T Consensus 78 ~~lliAsaD~~GrIil~d~~~~s~~~~l~ 106 (1062)
T KOG1912|consen 78 SQLLIASADISGRIILVDFVLASVINWLS 106 (1062)
T ss_pred cceeEEeccccCcEEEEEehhhhhhhhhc
Confidence 22 37788899999999999887766553
No 300
>KOG0309|consensus
Probab=96.45 E-value=0.0026 Score=45.81 Aligned_cols=75 Identities=23% Similarity=0.371 Sum_probs=56.9
Q ss_pred CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC-CCeEEEecCCCc
Q psy11100 15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ-YEKLTSSDETGL 93 (110)
Q Consensus 15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~~~~~ 93 (110)
.....++|+-....+.+.+..+.+++||...+. .++..+++|...|+.++|+.- ...+.+++.|++
T Consensus 159 s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs-------------~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t 225 (1081)
T KOG0309|consen 159 SAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS-------------TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT 225 (1081)
T ss_pred ccCceeeecccCcchhhhccCCceEEEeccCCC-------------cceEEecccceeeehHHHhhhhhhhhcccCCCCc
Confidence 455668887754444455667789999999875 256778889999999999874 334778889999
Q ss_pred EEEEeCCCC
Q psy11100 94 IIVWMLYKC 102 (110)
Q Consensus 94 i~~w~~~~~ 102 (110)
|.+||..+.
T Consensus 226 vkfw~y~kS 234 (1081)
T KOG0309|consen 226 VKFWDYSKS 234 (1081)
T ss_pred eeeeccccc
Confidence 999998754
No 301
>KOG2066|consensus
Probab=96.38 E-value=0.035 Score=40.38 Aligned_cols=70 Identities=16% Similarity=0.209 Sum_probs=48.5
Q ss_pred CCCCceEEEEEecC-------------CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEE
Q psy11100 12 PNNTKVNCLAWHQN-------------QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIW 78 (110)
Q Consensus 12 ~h~~~v~~~~~~p~-------------~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 78 (110)
+|.+.|....+.-. |+++++++.||++.+..+.+.. ..+++ .-...+.++++
T Consensus 56 tH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~--------------~~~~~-df~rpiksial 120 (846)
T KOG2066|consen 56 THRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDD--------------EITQY-DFKRPIKSIAL 120 (846)
T ss_pred cccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCc--------------cceeE-ecCCcceeEEe
Confidence 57777666655444 9999999999999998887765 22222 23466778888
Q ss_pred cCC-----CCeEEEecCCCcEEEE
Q psy11100 79 NEQ-----YEKLTSSDETGLIIVW 97 (110)
Q Consensus 79 s~~-----~~~l~s~~~~~~i~~w 97 (110)
+|+ ...+++|+..| +.++
T Consensus 121 ~Pd~~~~~sk~fv~GG~ag-lvL~ 143 (846)
T KOG2066|consen 121 HPDFSRQQSKQFVSGGMAG-LVLS 143 (846)
T ss_pred ccchhhhhhhheeecCcce-EEEe
Confidence 886 44577887776 5544
No 302
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.30 E-value=0.03 Score=41.08 Aligned_cols=69 Identities=14% Similarity=0.206 Sum_probs=49.2
Q ss_pred CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100 15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLI 94 (110)
Q Consensus 15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i 94 (110)
...+|++-..+|. +|.|+.+|.||+||-...+ +-..+.+-..+|.++..+.||.+++..+ +..|
T Consensus 578 ~~Fs~~aTt~~G~-iavgs~~G~IRLyd~~g~~--------------AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyL 641 (794)
T PF08553_consen 578 NNFSCFATTEDGY-IAVGSNKGDIRLYDRLGKR--------------AKTALPGLGDPIIGIDVTADGKWILATC-KTYL 641 (794)
T ss_pred CCceEEEecCCce-EEEEeCCCcEEeecccchh--------------hhhcCCCCCCCeeEEEecCCCcEEEEee-cceE
Confidence 4566666555664 8889999999999854332 3355666678999999999999976665 3455
Q ss_pred EEEeC
Q psy11100 95 IVWML 99 (110)
Q Consensus 95 ~~w~~ 99 (110)
.+++.
T Consensus 642 lLi~t 646 (794)
T PF08553_consen 642 LLIDT 646 (794)
T ss_pred EEEEE
Confidence 55553
No 303
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.14 E-value=0.041 Score=25.27 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCC---eEEEecCCCcEEEEeCCCC
Q psy11100 71 GKVRAIIWNEQYE---KLTSSDETGLIIVWMLYKC 102 (110)
Q Consensus 71 ~~v~~~~~s~~~~---~l~s~~~~~~i~~w~~~~~ 102 (110)
+.+.++.|||... +++-+...+.+-++|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4678999998544 7888888999999999964
No 304
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.13 E-value=0.11 Score=35.57 Aligned_cols=78 Identities=13% Similarity=0.138 Sum_probs=53.5
Q ss_pred CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCC-eEEEEEcCC------------
Q psy11100 15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGK-VRAIIWNEQ------------ 81 (110)
Q Consensus 15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~~------------ 81 (110)
-.+.++..+|++++.++...-|.|.++|+.... .++.++++.+. +.-+.....
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~--------------vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~ 373 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGI--------------VVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPK 373 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCCh--------------hhhhhccCccceEEEEEeecccccccccccccC
Confidence 457889999999999988888999999998875 44555554332 111111111
Q ss_pred -----CC-eEEEecCCCcEEEEeCCCCCChh
Q psy11100 82 -----YE-KLTSSDETGLIIVWMLYKCNDDD 106 (110)
Q Consensus 82 -----~~-~l~s~~~~~~i~~w~~~~~~~~~ 106 (110)
.. +++-+-..|.|.+|.+++|+.+-
T Consensus 374 ~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~ 404 (415)
T PF14655_consen 374 SSSRFALFLVIYAPRRGILEVWSMRQGPRVA 404 (415)
T ss_pred CCCcceEEEEEEeccCCeEEEEecCCCCEEE
Confidence 11 25566778999999999998754
No 305
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.98 E-value=0.12 Score=28.86 Aligned_cols=64 Identities=20% Similarity=0.204 Sum_probs=39.3
Q ss_pred eEEEEEec---CC-CEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCC
Q psy11100 17 VNCLAWHQ---NQ-GWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETG 92 (110)
Q Consensus 17 v~~~~~~p---~~-~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~ 92 (110)
|+++++.. +| ..|+.|+.|..+++|+-... +..+... +.|..+.-... ..|+.+-.+|
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~----------------~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NG 63 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI----------------VAEITET-DKVTSLCSLGG-GRFAYALANG 63 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE----------------EEEEecc-cceEEEEEcCC-CEEEEEecCC
Confidence 55666654 43 46999999999999977643 3444433 44444443333 4477777777
Q ss_pred cEEEEe
Q psy11100 93 LIIVWM 98 (110)
Q Consensus 93 ~i~~w~ 98 (110)
+|-+|+
T Consensus 64 TVGvY~ 69 (111)
T PF14783_consen 64 TVGVYD 69 (111)
T ss_pred EEEEEe
Confidence 765554
No 306
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=95.97 E-value=0.12 Score=34.28 Aligned_cols=75 Identities=13% Similarity=0.139 Sum_probs=50.9
Q ss_pred eEEEEEecCCCEEEEEecCC-cEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE-ecCCCcE
Q psy11100 17 VNCLAWHQNQGWIAVGGDDG-LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS-SDETGLI 94 (110)
Q Consensus 17 v~~~~~~p~~~~l~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s-~~~~~~i 94 (110)
+....+.|+++++++.+..- .+.+|++..+. ..+... ..+ .....-+.+.|+|++++... .-.+++|
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~----L~~~~~------~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV 215 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGK----LTPADP------AEV-KPGAGPRHIVFHPNGKYAYLVNELNSTV 215 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccCc----cccccc------ccc-CCCCCcceEEEcCCCcEEEEEeccCCEE
Confidence 78888999999887765422 58888888553 110000 011 23455678999999999544 4579999
Q ss_pred EEEeCCCC
Q psy11100 95 IVWMLYKC 102 (110)
Q Consensus 95 ~~w~~~~~ 102 (110)
.+|.....
T Consensus 216 ~v~~y~~~ 223 (346)
T COG2706 216 DVLEYNPA 223 (346)
T ss_pred EEEEEcCC
Confidence 99988763
No 307
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=95.88 E-value=0.19 Score=38.45 Aligned_cols=87 Identities=6% Similarity=-0.084 Sum_probs=51.1
Q ss_pred eEEEEEecCCCEE-EEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeec--------cCCCeEEEEEcCCCCeEEE
Q psy11100 17 VNCLAWHQNQGWI-AVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQG--------HSGKVRAIIWNEQYEKLTS 87 (110)
Q Consensus 17 v~~~~~~p~~~~l-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~l~s 87 (110)
...++++|++..+ ++-..++.|++||...+....... ..+..-.....+.. .-.....++++++|..+++
T Consensus 742 P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~g-g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVA 820 (1057)
T PLN02919 742 PSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAG-GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVA 820 (1057)
T ss_pred ccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEe-cccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEE
Confidence 4568999998744 455556899999987643100000 00000000001100 0112357899999998888
Q ss_pred ecCCCcEEEEeCCCCCC
Q psy11100 88 SDETGLIIVWMLYKCND 104 (110)
Q Consensus 88 ~~~~~~i~~w~~~~~~~ 104 (110)
-..++.|++||..++..
T Consensus 821 Ds~N~rIrviD~~tg~v 837 (1057)
T PLN02919 821 DSYNHKIKKLDPATKRV 837 (1057)
T ss_pred ECCCCEEEEEECCCCeE
Confidence 88899999999876543
No 308
>KOG2079|consensus
Probab=95.60 E-value=0.022 Score=42.67 Aligned_cols=69 Identities=14% Similarity=0.167 Sum_probs=48.2
Q ss_pred CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCCh
Q psy11100 26 QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDD 105 (110)
Q Consensus 26 ~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~ 105 (110)
+.+++.|+..|.+-..|....- .....-..-.++|.+++|+.+|..++.|-.+|.|.+||...++.+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL-------------~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l 165 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNL-------------GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKIL 165 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhccc-------------chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcce
Confidence 4456667666766665555422 011111223578999999999999999999999999999987765
Q ss_pred hh
Q psy11100 106 DE 107 (110)
Q Consensus 106 ~~ 107 (110)
..
T Consensus 166 ~~ 167 (1206)
T KOG2079|consen 166 KV 167 (1206)
T ss_pred ee
Confidence 54
No 309
>KOG1920|consensus
Probab=95.53 E-value=0.43 Score=36.69 Aligned_cols=71 Identities=11% Similarity=0.116 Sum_probs=53.6
Q ss_pred CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCc
Q psy11100 14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGL 93 (110)
Q Consensus 14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~ 93 (110)
...|..+.|..++.-++.+..+|.+.+-|..+.. ......-.+.|.+++||||++.++-.+...+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~---------------~eivg~vd~GI~aaswS~Dee~l~liT~~~t 132 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLE---------------LEIVGNVDNGISAASWSPDEELLALITGRQT 132 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccc---------------eeeeeeccCceEEEeecCCCcEEEEEeCCcE
Confidence 3678888888888777777788888887666553 2223334678999999999999888888888
Q ss_pred EEEEeC
Q psy11100 94 IIVWML 99 (110)
Q Consensus 94 i~~w~~ 99 (110)
+.+.+.
T Consensus 133 ll~mT~ 138 (1265)
T KOG1920|consen 133 LLFMTK 138 (1265)
T ss_pred EEEEec
Confidence 877643
No 310
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=95.45 E-value=0.03 Score=38.77 Aligned_cols=77 Identities=6% Similarity=-0.031 Sum_probs=54.3
Q ss_pred CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC---
Q psy11100 15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET--- 91 (110)
Q Consensus 15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~--- 91 (110)
-++....+||.|.++++... ..|.+|...... .+..+ ....|..+.|||.+..|.+=...
T Consensus 33 ~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~--------------~l~~~--~~~~V~~~~fSP~~kYL~tw~~~pi~ 95 (561)
T COG5354 33 WPVAYVSESPLGTYLFSEHA-AGVECWGGPSKA--------------KLVRF--RHPDVKYLDFSPNEKYLVTWSREPII 95 (561)
T ss_pred cchhheeecCcchheehhhc-cceEEccccchh--------------heeee--ecCCceecccCcccceeeeeccCCcc
Confidence 46777899999999887654 457788777654 22223 34667888899988887765432
Q ss_pred ------------CcEEEEeCCCCCChhhh
Q psy11100 92 ------------GLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 92 ------------~~i~~w~~~~~~~~~~~ 108 (110)
..+.+||..+|..+..+
T Consensus 96 ~pe~e~sp~~~~n~~~vwd~~sg~iv~sf 124 (561)
T COG5354 96 EPEIEISPFTSKNNVFVWDIASGMIVFSF 124 (561)
T ss_pred ChhhccCCccccCceeEEeccCceeEeec
Confidence 34899999998876543
No 311
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=95.42 E-value=0.11 Score=39.05 Aligned_cols=74 Identities=18% Similarity=0.225 Sum_probs=48.3
Q ss_pred eEEEEEecCCCEEEEEec---CCcEEEEEcCCCCCcCCcccccccceeeeEEee--ccCCCeEEEEEcCCCCeEEEecCC
Q psy11100 17 VNCLAWHQNQGWIAVGGD---DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQ--GHSGKVRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 17 v~~~~~~p~~~~l~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~~ 91 (110)
-.+++|.|.|+++|+... ...|.+|.-+..+ .-.+.+. .....|..++||+++..|+....+
T Consensus 259 e~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLr-------------hgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~ 325 (928)
T PF04762_consen 259 EGALSWRPSGNLIASSQRLPDRHDVVFFERNGLR-------------HGEFTLRFDPEEEKVIELAWNSDSEILAVWLED 325 (928)
T ss_pred cCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcE-------------eeeEecCCCCCCceeeEEEECCCCCEEEEEecC
Confidence 446899999999888764 1234444433322 0113333 234578999999999998886644
Q ss_pred CcEEEEeCCCCCC
Q psy11100 92 GLIIVWMLYKCND 104 (110)
Q Consensus 92 ~~i~~w~~~~~~~ 104 (110)
. |++|...+-.|
T Consensus 326 ~-vqLWt~~NYHW 337 (928)
T PF04762_consen 326 R-VQLWTRSNYHW 337 (928)
T ss_pred C-ceEEEeeCCEE
Confidence 4 99997766554
No 312
>KOG2314|consensus
Probab=95.38 E-value=0.11 Score=36.69 Aligned_cols=74 Identities=11% Similarity=0.179 Sum_probs=48.6
Q ss_pred ceEEEEEecCCCEEEEEe---cCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec---
Q psy11100 16 KVNCLAWHQNQGWIAVGG---DDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD--- 89 (110)
Q Consensus 16 ~v~~~~~~p~~~~l~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~--- 89 (110)
..+.+.|+|.|++++.+. ..|.+.++|..-.. +..+-....-..+.+.|.|.|+.+.+++
T Consensus 494 ~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~--------------~k~~~~~eh~~at~veWDPtGRYvvT~ss~w 559 (698)
T KOG2314|consen 494 FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYAD--------------LKDTASPEHFAATEVEWDPTGRYVVTSSSSW 559 (698)
T ss_pred ccceEEEcCCCcEEEEEEecccccceEEEecchhh--------------hhhccCccccccccceECCCCCEEEEeeehh
Confidence 456789999999976654 46788898887533 1111111223456789999999988776
Q ss_pred ---CCCcEEEEeCCCCC
Q psy11100 90 ---ETGLIIVWMLYKCN 103 (110)
Q Consensus 90 ---~~~~i~~w~~~~~~ 103 (110)
.|.--++|++...-
T Consensus 560 rhk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 560 RHKVDNGYRIFTFQGRL 576 (698)
T ss_pred hhccccceEEEEeecHH
Confidence 34446677766443
No 313
>KOG1912|consensus
Probab=95.19 E-value=0.13 Score=37.87 Aligned_cols=81 Identities=12% Similarity=0.212 Sum_probs=58.6
Q ss_pred CCCCceEEEEEecC------C-----C-EEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEc
Q psy11100 12 PNNTKVNCLAWHQN------Q-----G-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWN 79 (110)
Q Consensus 12 ~h~~~v~~~~~~p~------~-----~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 79 (110)
.|...|+.+.|.|. + + .++++...|.+.+||..... ...-+..+.+.+..++|=
T Consensus 53 ~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s--------------~~~~l~~~~~~~qdl~W~ 118 (1062)
T KOG1912|consen 53 LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLAS--------------VINWLSHSNDSVQDLCWV 118 (1062)
T ss_pred cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhh--------------hhhhhcCCCcchhheeee
Confidence 47789999999772 1 1 36788888999999998765 334566677788888885
Q ss_pred C---CC-CeEEEecCCCcEEEEeCCCCCChh
Q psy11100 80 E---QY-EKLTSSDETGLIIVWMLYKCNDDD 106 (110)
Q Consensus 80 ~---~~-~~l~s~~~~~~i~~w~~~~~~~~~ 106 (110)
+ +. ..++.-...+++-+||..+|..+.
T Consensus 119 ~~rd~Srd~LlaIh~ss~lvLwntdtG~k~W 149 (1062)
T KOG1912|consen 119 PARDDSRDVLLAIHGSSTLVLWNTDTGEKFW 149 (1062)
T ss_pred eccCcchheeEEecCCcEEEEEEccCCceee
Confidence 4 34 235555667889999988887543
No 314
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=95.12 E-value=0.45 Score=29.83 Aligned_cols=85 Identities=14% Similarity=0.073 Sum_probs=52.5
Q ss_pred CceEEEEEecCCCEEE-EEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCc
Q psy11100 15 TKVNCLAWHQNQGWIA-VGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGL 93 (110)
Q Consensus 15 ~~v~~~~~~p~~~~l~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~ 93 (110)
.....++|+|+++.|. +-+..+.|..+++..... .. ........+....+..-.+++..+|.++++....+.
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~---~~----~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~ 206 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGG---EL----SNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR 206 (246)
T ss_dssp SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTC---CE----EEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE
T ss_pred ccccceEECCcchheeecccccceeEEEecccccc---ce----eeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE
Confidence 4466799999998765 445567788888764330 00 000011112222234667999999998888778889
Q ss_pred EEEEeCCCCCChhh
Q psy11100 94 IIVWMLYKCNDDDE 107 (110)
Q Consensus 94 i~~w~~~~~~~~~~ 107 (110)
|.+++.. |+.+.+
T Consensus 207 I~~~~p~-G~~~~~ 219 (246)
T PF08450_consen 207 IVVFDPD-GKLLRE 219 (246)
T ss_dssp EEEEETT-SCEEEE
T ss_pred EEEECCC-ccEEEE
Confidence 9999987 665543
No 315
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.08 E-value=0.13 Score=23.58 Aligned_cols=32 Identities=13% Similarity=0.318 Sum_probs=26.1
Q ss_pred CceEEEEEecC-C--CEEEEEecCCcEEEEEcCCC
Q psy11100 15 TKVNCLAWHQN-Q--GWIAVGGDDGLLKVLKLDTG 46 (110)
Q Consensus 15 ~~v~~~~~~p~-~--~~l~~~~~~~~v~~~~~~~~ 46 (110)
+.+.+++|+|+ + .+|+.+-..+.+.++|+...
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 46889999985 4 58888888899999999853
No 316
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.91 E-value=0.52 Score=29.48 Aligned_cols=80 Identities=14% Similarity=0.072 Sum_probs=47.4
Q ss_pred EecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEe--eccCCCeEEEEEcCCCCeEEEecCCCcEEEEeC
Q psy11100 22 WHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL--QGHSGKVRAIIWNEQYEKLTSSDETGLIIVWML 99 (110)
Q Consensus 22 ~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~ 99 (110)
+..++.++.+-..+|.+++||+...+-.-+. ....++...... ......|..+.++.+|..+++-+ +|..+.|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~--~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPP--VSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCC--ccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 4557888988899999999999976511000 000000000000 03446678888888888877665 466777776
Q ss_pred CCCCC
Q psy11100 100 YKCND 104 (110)
Q Consensus 100 ~~~~~ 104 (110)
.=+.|
T Consensus 95 ~L~~W 99 (219)
T PF07569_consen 95 DLGCW 99 (219)
T ss_pred cccee
Confidence 54433
No 317
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=94.84 E-value=0.15 Score=33.67 Aligned_cols=81 Identities=19% Similarity=0.398 Sum_probs=54.5
Q ss_pred CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeecc------------CCCeEEEEEcC
Q psy11100 13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH------------SGKVRAIIWNE 80 (110)
Q Consensus 13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~v~~~~~s~ 80 (110)
....|+++.|.-.|.++++|...|.|.++.-.... +.. +.....+++| ...|..+.|-.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~---~ce------ykf~teFQshe~EFDYLkSleieEKin~I~w~~ 95 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSY---GCE------YKFFTEFQSHELEFDYLKSLEIEEKINAIEWFD 95 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeeccccc---ccc------hhhhhhhcccccchhhhhhccHHHHhhheeeec
Confidence 34578899999999999999999999888654432 000 0011222232 23467788876
Q ss_pred CCCe--EEEecCCCcEEEEeCCCC
Q psy11100 81 QYEK--LTSSDETGLIIVWMLYKC 102 (110)
Q Consensus 81 ~~~~--l~s~~~~~~i~~w~~~~~ 102 (110)
++.. ++-.+.|.+|++|.+...
T Consensus 96 ~t~r~hFLlstNdktiKlWKiyek 119 (460)
T COG5170 96 DTGRNHFLLSTNDKTIKLWKIYEK 119 (460)
T ss_pred CCCcceEEEecCCceeeeeeeecc
Confidence 6443 777788999999988754
No 318
>KOG4190|consensus
Probab=94.60 E-value=0.11 Score=36.82 Aligned_cols=98 Identities=16% Similarity=0.194 Sum_probs=61.3
Q ss_pred cCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCc--------CCc------cccccc-----------------
Q psy11100 10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKES--------TGQ------VAAANV----------------- 58 (110)
Q Consensus 10 ~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~--------~~~------~~~~~~----------------- 58 (110)
+..|+.+|.++.|-.+.+.+++ .|+.+.+||...++-- .+. ......
T Consensus 780 Y~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~D 857 (1034)
T KOG4190|consen 780 YQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFD 857 (1034)
T ss_pred hhhccCcccceeeeeccceeee--ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeee
Confidence 3468888888888777766654 5788999996543210 000 000000
Q ss_pred --ceeeeEEe-----eccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCChhhhh
Q psy11100 59 --NLAMNQSL-----QGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEWK 109 (110)
Q Consensus 59 --~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~~~~ 109 (110)
.......+ .+....+.+++..+.|++++.+-.+|.|-+.|.++|+.+-.||
T Consensus 858 aRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 858 ARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred cccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence 00001111 1123457788999999999999999999999999998766543
No 319
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.44 E-value=0.86 Score=30.89 Aligned_cols=73 Identities=16% Similarity=0.262 Sum_probs=44.3
Q ss_pred ceEEEEEecCCCEEEEE-ecCC----cEEEEEcCCCCCcCCcccccccceeeeE-EeeccCCCeEEEEEcCCCCeEEEec
Q psy11100 16 KVNCLAWHQNQGWIAVG-GDDG----LLKVLKLDTGKESTGQVAAANVNLAMNQ-SLQGHSGKVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 16 ~v~~~~~~p~~~~l~~~-~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~s~~ 89 (110)
.+....++|+|++++.+ +..| .++++|+.++. .+. .+.. .....+.|.+++..|....
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~--------------~l~d~i~~--~~~~~~~W~~d~~~~~y~~ 188 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGK--------------FLPDGIEN--PKFSSVSWSDDGKGFFYTR 188 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTE--------------EEEEEEEE--EESEEEEECTTSSEEEEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCc--------------CcCCcccc--cccceEEEeCCCCEEEEEE
Confidence 34467889999987765 4444 48999998875 111 1121 1112399999988865554
Q ss_pred CC-----------CcEEEEeCCCCCC
Q psy11100 90 ET-----------GLIIVWMLYKCND 104 (110)
Q Consensus 90 ~~-----------~~i~~w~~~~~~~ 104 (110)
.+ ..|..|++.++..
T Consensus 189 ~~~~~~~~~~~~~~~v~~~~~gt~~~ 214 (414)
T PF02897_consen 189 FDEDQRTSDSGYPRQVYRHKLGTPQS 214 (414)
T ss_dssp CSTTTSS-CCGCCEEEEEEETTS-GG
T ss_pred eCcccccccCCCCcEEEEEECCCChH
Confidence 22 2366777665543
No 320
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.37 E-value=1.5 Score=32.40 Aligned_cols=88 Identities=13% Similarity=0.213 Sum_probs=52.1
Q ss_pred CceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeE------Ee-eccCCCeEEEEEcCC---CCe
Q psy11100 15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQ------SL-QGHSGKVRAIIWNEQ---YEK 84 (110)
Q Consensus 15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~v~~~~~s~~---~~~ 84 (110)
-.|..+.++|+|..++..+..| |.|..+.......+........+.+.. .+ ......|..+.|+|. +.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3678899999999888777654 444455431100010100011111100 11 123457889999996 467
Q ss_pred EEEecCCCcEEEEeCCCCC
Q psy11100 85 LTSSDETGLIIVWMLYKCN 103 (110)
Q Consensus 85 l~s~~~~~~i~~w~~~~~~ 103 (110)
|+--..|+.+++||+.+.+
T Consensus 164 l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEecCCEEEEEecCCCC
Confidence 8888889999999997543
No 321
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=94.27 E-value=0.072 Score=35.14 Aligned_cols=85 Identities=8% Similarity=0.138 Sum_probs=51.1
Q ss_pred ceEEEEEecC-CCEEEEEecCCcEEEEEcCCCC--CcCCcccc-cccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC
Q psy11100 16 KVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGK--ESTGQVAA-ANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 16 ~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~ 91 (110)
-|++..|+|. ...+...+..|.+++.|++... +-...+.. ...+. -..-+.+-...|+.+.|++.|+.+++.+ -
T Consensus 223 VItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v-~~~ff~eivsSISD~kFs~ngryIlsRd-y 300 (460)
T COG5170 223 VITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGV-DVDFFEEIVSSISDFKFSDNGRYILSRD-Y 300 (460)
T ss_pred HHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcc-cchhHHHHhhhhcceEEcCCCcEEEEec-c
Confidence 4566778886 4456777778999999887321 00011100 00000 0011222346688999999999988876 4
Q ss_pred CcEEEEeCCCC
Q psy11100 92 GLIIVWMLYKC 102 (110)
Q Consensus 92 ~~i~~w~~~~~ 102 (110)
-++++||++..
T Consensus 301 ltvkiwDvnm~ 311 (460)
T COG5170 301 LTVKIWDVNMA 311 (460)
T ss_pred ceEEEEecccc
Confidence 58999998643
No 322
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.21 E-value=0.26 Score=32.80 Aligned_cols=64 Identities=11% Similarity=0.183 Sum_probs=41.5
Q ss_pred ecCCCEEEEEec---------CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCc
Q psy11100 23 HQNQGWIAVGGD---------DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGL 93 (110)
Q Consensus 23 ~p~~~~l~~~~~---------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~ 93 (110)
|||++.++.... .+.+.++|+.+.. ...+......+....|||+|..++... ++.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~---------------~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~n 64 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGE---------------ITPLTPPPPKLQDAKWSPDGKYIAFVR-DNN 64 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTE---------------EEESS-EETTBSEEEE-SSSTEEEEEE-TTE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCc---------------eEECcCCccccccceeecCCCeeEEEe-cCc
Confidence 567776554321 2457788888764 222332256778899999999988776 568
Q ss_pred EEEEeCCCC
Q psy11100 94 IIVWMLYKC 102 (110)
Q Consensus 94 i~~w~~~~~ 102 (110)
|.+.+..++
T Consensus 65 ly~~~~~~~ 73 (353)
T PF00930_consen 65 LYLRDLATG 73 (353)
T ss_dssp EEEESSTTS
T ss_pred eEEEECCCC
Confidence 888887665
No 323
>KOG0882|consensus
Probab=94.15 E-value=0.032 Score=38.30 Aligned_cols=79 Identities=11% Similarity=0.112 Sum_probs=58.0
Q ss_pred CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC-C
Q psy11100 13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE-T 91 (110)
Q Consensus 13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-~ 91 (110)
|...|+.+. .....++.+++.||.++.|.-.... .......+..|-..+.+++.+.++..+.|++. |
T Consensus 8 hrd~i~hv~-~tka~fiiqASlDGh~KFWkKs~is-----------GvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~D 75 (558)
T KOG0882|consen 8 HRDVITHVF-PTKAKFIIQASLDGHKKFWKKSRIS-----------GVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPD 75 (558)
T ss_pred ccceeeeEe-eehhheEEeeecchhhhhcCCCCcc-----------ceeehhhhHHHHHHHHhhhccccceeEeeccCcc
Confidence 556666543 3346788999999999999766522 11234455667788889999999999999777 9
Q ss_pred CcEEEEeCCCCC
Q psy11100 92 GLIIVWMLYKCN 103 (110)
Q Consensus 92 ~~i~~w~~~~~~ 103 (110)
..++++|+.+-.
T Consensus 76 hs~KvfDvEn~D 87 (558)
T KOG0882|consen 76 HSVKVFDVENFD 87 (558)
T ss_pred cceeEEEeeccc
Confidence 999999887543
No 324
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=94.00 E-value=0.12 Score=36.45 Aligned_cols=34 Identities=21% Similarity=0.177 Sum_probs=30.2
Q ss_pred cCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCC
Q psy11100 69 HSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKC 102 (110)
Q Consensus 69 ~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~ 102 (110)
....|.+.++||+...++.|+.||+|.+||...+
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~ 291 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG 291 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCC
Confidence 3567889999999999999999999999998765
No 325
>KOG4649|consensus
Probab=93.51 E-value=0.64 Score=30.21 Aligned_cols=65 Identities=12% Similarity=0.005 Sum_probs=43.7
Q ss_pred CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCC
Q psy11100 26 QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCND 104 (110)
Q Consensus 26 ~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~ 104 (110)
|..++.|+..|.+++.+.+++. +++...... ..-......+++..+.++++|+.++..|+++-..
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs-----------~~w~f~~~~---~vk~~a~~d~~~glIycgshd~~~yalD~~~~~c 127 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGS-----------QIWNFVILE---TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGC 127 (354)
T ss_pred CCEEEEEEccCcEEEEEecchh-----------heeeeeehh---hhccceEEcCCCceEEEecCCCcEEEecccccce
Confidence 5667788888888888888774 111111111 1112345577899999999999999999876544
No 326
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=93.41 E-value=1.5 Score=29.14 Aligned_cols=77 Identities=12% Similarity=0.176 Sum_probs=48.4
Q ss_pred eEEEEEecCCCEEEEEec-CCcEEEEEcCCCCCcCCcccccccceeeeEEee----------ccCCCeEEEEEcCCCCeE
Q psy11100 17 VNCLAWHQNQGWIAVGGD-DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQ----------GHSGKVRAIIWNEQYEKL 85 (110)
Q Consensus 17 v~~~~~~p~~~~l~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~s~~~~~l 85 (110)
...++++|++++++.+.. ++.+.++++.... .... ...... ........+.++|+++++
T Consensus 89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g----~l~~------~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v 158 (345)
T PF10282_consen 89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDG----SLGE------VVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFV 158 (345)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTS----EEEE------EEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEE
T ss_pred cEEEEEecCCCEEEEEEccCCeEEEEEccCCc----ccce------eeeecccCCCCCcccccccccceeEEECCCCCEE
Confidence 345788999998888764 7899999998642 1100 000110 112457889999999986
Q ss_pred EEec-CCCcEEEEeCCCCC
Q psy11100 86 TSSD-ETGLIIVWMLYKCN 103 (110)
Q Consensus 86 ~s~~-~~~~i~~w~~~~~~ 103 (110)
+..+ ....|.++++....
T Consensus 159 ~v~dlG~D~v~~~~~~~~~ 177 (345)
T PF10282_consen 159 YVPDLGADRVYVYDIDDDT 177 (345)
T ss_dssp EEEETTTTEEEEEEE-TTS
T ss_pred EEEecCCCEEEEEEEeCCC
Confidence 6554 45578888886554
No 327
>PRK02888 nitrous-oxide reductase; Validated
Probab=93.30 E-value=1.4 Score=31.93 Aligned_cols=33 Identities=6% Similarity=-0.016 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCe-EEEecCCCcEEEEeCCCCC
Q psy11100 71 GKVRAIIWNEQYEK-LTSSDETGLIIVWMLYKCN 103 (110)
Q Consensus 71 ~~v~~~~~s~~~~~-l~s~~~~~~i~~w~~~~~~ 103 (110)
.....+.++|||++ ++++..++++.+.|+.+.+
T Consensus 321 KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 321 KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred CCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 44567899999999 4455678999999998755
No 328
>KOG1916|consensus
Probab=93.28 E-value=0.07 Score=39.81 Aligned_cols=74 Identities=16% Similarity=0.344 Sum_probs=48.3
Q ss_pred CCCCceEEEEEec---CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCe-----------EEEE
Q psy11100 12 PNNTKVNCLAWHQ---NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKV-----------RAII 77 (110)
Q Consensus 12 ~h~~~v~~~~~~p---~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----------~~~~ 77 (110)
+....+.-+.|+| +..++.++..++.+++.+..... ...+.+|+..+ .--.
T Consensus 178 p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~---------------~~l~rsHs~~~~d~a~~~~g~~~l~~ 242 (1283)
T KOG1916|consen 178 PYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL---------------RSLFRSHSQRVTDMAFFAEGVLKLAS 242 (1283)
T ss_pred cCCCCcceeeecccccccceeeeccCCCceeEeeechHH---------------HHHHHhcCCCcccHHHHhhchhhhee
Confidence 3344556667766 45667788888999988776543 01122232222 1234
Q ss_pred EcCCCCeEEEecCCCcEEEEeCC
Q psy11100 78 WNEQYEKLTSSDETGLIIVWMLY 100 (110)
Q Consensus 78 ~s~~~~~l~s~~~~~~i~~w~~~ 100 (110)
.||||..|+.+..||.+.+|.+.
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeee
Confidence 79999999999999998888753
No 329
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=93.16 E-value=0.86 Score=30.53 Aligned_cols=39 Identities=10% Similarity=0.032 Sum_probs=26.5
Q ss_pred CeEEEEEcCCCCe-EEEe-cCCCcEEEEeCCCCCChhhhhC
Q psy11100 72 KVRAIIWNEQYEK-LTSS-DETGLIIVWMLYKCNDDDEWKR 110 (110)
Q Consensus 72 ~v~~~~~s~~~~~-l~s~-~~~~~i~~w~~~~~~~~~~~~~ 110 (110)
.+.+++.+.+..- |... ..++.|.++|..+|+.++.+++
T Consensus 290 ~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 290 PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 4668888888764 4443 4578999999999998887754
No 330
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.11 E-value=0.65 Score=31.95 Aligned_cols=51 Identities=16% Similarity=0.151 Sum_probs=40.8
Q ss_pred ceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCChhhhh
Q psy11100 59 NLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEWK 109 (110)
Q Consensus 59 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~~~~ 109 (110)
.+.+...+......+.++..+|.+.+.+..+.-|.|.++|+.++..++-||
T Consensus 296 ~l~~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK 346 (415)
T PF14655_consen 296 PLPMRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK 346 (415)
T ss_pred ccceEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc
Confidence 333455555556678899999999998888888999999999998887665
No 331
>KOG2444|consensus
Probab=92.93 E-value=0.42 Score=30.12 Aligned_cols=63 Identities=17% Similarity=0.248 Sum_probs=39.3
Q ss_pred CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccC-CCeEEEEEcCCCCeEEEe--cCCCcEEEEeCCC
Q psy11100 25 NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHS-GKVRAIIWNEQYEKLTSS--DETGLIIVWMLYK 101 (110)
Q Consensus 25 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~--~~~~~i~~w~~~~ 101 (110)
++.+..+++.++.++.|++...+ .+.....|. ..+.....+..++.+.++ +.+..++.|++..
T Consensus 113 ~~~~~c~~~~dg~ir~~n~~p~k--------------~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 113 DSSLGCVGAQDGRIRACNIKPNK--------------VLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccceeEEeccCCceeeeccccCc--------------eeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 34577788889999999888765 333344444 334444445555555555 5666677776654
No 332
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=92.85 E-value=1.2 Score=26.61 Aligned_cols=31 Identities=13% Similarity=0.108 Sum_probs=24.7
Q ss_pred CeEEEEEcCCC------CeEEEecCCCcEEEEeCCCC
Q psy11100 72 KVRAIIWNEQY------EKLTSSDETGLIIVWMLYKC 102 (110)
Q Consensus 72 ~v~~~~~s~~~------~~l~s~~~~~~i~~w~~~~~ 102 (110)
.+..++|||.| -.|+..+.++.|.+|....+
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 78899999943 24778889999999987754
No 333
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=92.53 E-value=2.3 Score=30.18 Aligned_cols=35 Identities=9% Similarity=0.032 Sum_probs=25.8
Q ss_pred CCeEEEEEcC----CCCeEEEecCCCcEEEEeCCCCCCh
Q psy11100 71 GKVRAIIWNE----QYEKLTSSDETGLIIVWMLYKCNDD 105 (110)
Q Consensus 71 ~~v~~~~~s~----~~~~l~s~~~~~~i~~w~~~~~~~~ 105 (110)
..+...+++. +..++++.+.|+.|++||+.++..+
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~ 253 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCL 253 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEE
Confidence 3455666666 6677889999999999999999873
No 334
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=92.46 E-value=0.61 Score=32.18 Aligned_cols=73 Identities=18% Similarity=0.241 Sum_probs=41.6
Q ss_pred ceEEEEEecCCCEEEE-EecCCc--EEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec-CC
Q psy11100 16 KVNCLAWHQNQGWIAV-GGDDGL--LKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD-ET 91 (110)
Q Consensus 16 ~v~~~~~~p~~~~l~~-~~~~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~~ 91 (110)
.....+|+|||++++. ...++. +.+.|+.... ...+....+.-..-.|+|+|+.++-.+ ..
T Consensus 239 ~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~---------------~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~ 303 (425)
T COG0823 239 NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN---------------LPRLTNGFGINTSPSWSPDGSKIVFTSDRG 303 (425)
T ss_pred ccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc---------------ceecccCCccccCccCCCCCCEEEEEeCCC
Confidence 3445789999987654 455665 4555555543 112222222223678999999966554 44
Q ss_pred Cc--EEEEeCCCCC
Q psy11100 92 GL--IIVWMLYKCN 103 (110)
Q Consensus 92 ~~--i~~w~~~~~~ 103 (110)
|. |.+.+...+.
T Consensus 304 G~p~I~~~~~~g~~ 317 (425)
T COG0823 304 GRPQIYLYDLEGSQ 317 (425)
T ss_pred CCcceEEECCCCCc
Confidence 44 5555655443
No 335
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=92.25 E-value=1.8 Score=27.09 Aligned_cols=72 Identities=17% Similarity=0.136 Sum_probs=43.2
Q ss_pred CCceEEEEEecCCCEEEEEecC--------CcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeE
Q psy11100 14 NTKVNCLAWHQNQGWIAVGGDD--------GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKL 85 (110)
Q Consensus 14 ~~~v~~~~~~p~~~~l~~~~~~--------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 85 (110)
......+++.|+|++.++.... +.+..++.. .. .......-...+.++|+|++..+
T Consensus 85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~---------------~~~~~~~~~~pNGi~~s~dg~~l 148 (246)
T PF08450_consen 85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK---------------VTVVADGLGFPNGIAFSPDGKTL 148 (246)
T ss_dssp TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE---------------EEEEEEEESSEEEEEEETTSSEE
T ss_pred cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce---------------EEEEecCcccccceEECCcchhe
Confidence 3467778888888865554432 234444444 22 12222234557899999999875
Q ss_pred E-EecCCCcEEEEeCCC
Q psy11100 86 T-SSDETGLIIVWMLYK 101 (110)
Q Consensus 86 ~-s~~~~~~i~~w~~~~ 101 (110)
. +-+..+.|..+++..
T Consensus 149 yv~ds~~~~i~~~~~~~ 165 (246)
T PF08450_consen 149 YVADSFNGRIWRFDLDA 165 (246)
T ss_dssp EEEETTTTEEEEEEEET
T ss_pred eecccccceeEEEeccc
Confidence 4 556677888888763
No 336
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.22 E-value=1.1 Score=31.19 Aligned_cols=56 Identities=16% Similarity=0.322 Sum_probs=32.9
Q ss_pred CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeC
Q psy11100 26 QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWML 99 (110)
Q Consensus 26 ~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~ 99 (110)
|.+|+..+. +.+.+||..... .+..+.. ..|..+.||+++++++-.+.+ .+.+.+.
T Consensus 117 G~LL~~~~~-~~i~~yDw~~~~--------------~i~~i~v--~~vk~V~Ws~~g~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 117 GNLLGVKSS-DFICFYDWETGK--------------LIRRIDV--SAVKYVIWSDDGELVALVTKD-SIYILKY 172 (443)
T ss_dssp SSSEEEEET-TEEEEE-TTT----------------EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE
T ss_pred CcEEEEECC-CCEEEEEhhHcc--------------eeeEEec--CCCcEEEEECCCCEEEEEeCC-eEEEEEe
Confidence 666655543 368888888766 4555543 238899999999998888744 5666554
No 337
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=91.83 E-value=1.1 Score=30.92 Aligned_cols=70 Identities=16% Similarity=0.225 Sum_probs=40.1
Q ss_pred EEEEecCCCEEEEEe-cCCcEEEE--EcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecC-CCc-
Q psy11100 19 CLAWHQNQGWIAVGG-DDGLLKVL--KLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDE-TGL- 93 (110)
Q Consensus 19 ~~~~~p~~~~l~~~~-~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-~~~- 93 (110)
.-.|+|||+.++..+ ..|.-.+| +..... . ..+......-....|||+|..++..+. +|.
T Consensus 286 ~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~--------------~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~ 350 (425)
T COG0823 286 SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ--------------V-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQW 350 (425)
T ss_pred CccCCCCCCEEEEEeCCCCCcceEEECCCCCc--------------e-eEeeccCCCCcCccCCCCCCEEEEEeccCCce
Confidence 578899999876654 44544444 444432 1 222222222227889999999776663 233
Q ss_pred -EEEEeCCCCC
Q psy11100 94 -IIVWMLYKCN 103 (110)
Q Consensus 94 -i~~w~~~~~~ 103 (110)
|.+.++.++.
T Consensus 351 ~i~~~~~~~~~ 361 (425)
T COG0823 351 DIDKNDLASGG 361 (425)
T ss_pred eeEEeccCCCC
Confidence 5555665544
No 338
>KOG2377|consensus
Probab=91.76 E-value=1.7 Score=30.62 Aligned_cols=62 Identities=11% Similarity=0.251 Sum_probs=41.8
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYE 83 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 83 (110)
...|++.++.|++|.+.+|....++++.+++..... ++ .+....++..+..|..+.|+..-+
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~---~~-------l~~~~~ck~k~~~IlGF~W~~s~e 125 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN---SQ-------LEYTQECKTKNANILGFCWTSSTE 125 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCCc---hh-------hHHHHHhccCcceeEEEEEecCee
Confidence 356799999999999999999999999998875432 00 011222333344577778866533
No 339
>PRK02888 nitrous-oxide reductase; Validated
Probab=91.68 E-value=1.8 Score=31.50 Aligned_cols=81 Identities=6% Similarity=0.033 Sum_probs=51.0
Q ss_pred eEEEEEecCCCEEEEE-ecCCcEEEEEcCCCCCc-CCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcE
Q psy11100 17 VNCLAWHQNQGWIAVG-GDDGLLKVLKLDTGKES-TGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLI 94 (110)
Q Consensus 17 v~~~~~~p~~~~l~~~-~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i 94 (110)
...+.++|||+++..+ ..+..+.+.|+....+- ....+ .... ...... -...-...+|.++|....|.-.|+.|
T Consensus 323 PHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~--~~~~-vvaeve-vGlGPLHTaFDg~G~aytslf~dsqv 398 (635)
T PRK02888 323 PHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK--PRDA-VVAEPE-LGLGPLHTAFDGRGNAYTTLFLDSQI 398 (635)
T ss_pred ccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC--ccce-EEEeec-cCCCcceEEECCCCCEEEeEeeccee
Confidence 4457889999986554 55889999999875410 00000 0000 011111 12334578899998878888889999
Q ss_pred EEEeCCC
Q psy11100 95 IVWMLYK 101 (110)
Q Consensus 95 ~~w~~~~ 101 (110)
-.||+.+
T Consensus 399 ~kwn~~~ 405 (635)
T PRK02888 399 VKWNIEA 405 (635)
T ss_pred EEEehHH
Confidence 9999875
No 340
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=91.63 E-value=1.7 Score=30.60 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=24.8
Q ss_pred CCCceEEEEEecCCCEE--EEEecCCcEEEEEcCCC
Q psy11100 13 NNTKVNCLAWHQNQGWI--AVGGDDGLLKVLKLDTG 46 (110)
Q Consensus 13 h~~~v~~~~~~p~~~~l--~~~~~~~~v~~~~~~~~ 46 (110)
-.++|...+|.|.++.+ ++|-..-.+.++|++..
T Consensus 273 ~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 273 LKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred ccccceeeeecccCCceeEEecccccceeecccccc
Confidence 36899999999987654 44456667777877754
No 341
>PRK13616 lipoprotein LpqB; Provisional
Probab=91.61 E-value=1.3 Score=32.00 Aligned_cols=71 Identities=13% Similarity=0.153 Sum_probs=37.7
Q ss_pred eEEEEEecCCCEEEEEecCCc-EEEEEcCCCCCcCCccc--ccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCc
Q psy11100 17 VNCLAWHQNQGWIAVGGDDGL-LKVLKLDTGKESTGQVA--AANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGL 93 (110)
Q Consensus 17 v~~~~~~p~~~~l~~~~~~~~-v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~ 93 (110)
.....|+|+|..+.+...... +++.+..... +.- ..... .... ...+.|..++|||||..++-.. ++.
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~g----ql~~~~vd~g--e~~~--~~~g~Issl~wSpDG~RiA~i~-~g~ 469 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATG----QLARTPVDAS--AVAS--RVPGPISELQLSRDGVRAAMII-GGK 469 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCc----eEEEEeccCc--hhhh--ccCCCcCeEEECCCCCEEEEEE-CCE
Confidence 677899999887777654322 2222211110 000 00000 0011 2245699999999999866544 456
Q ss_pred EEE
Q psy11100 94 IIV 96 (110)
Q Consensus 94 i~~ 96 (110)
|++
T Consensus 470 v~V 472 (591)
T PRK13616 470 VYL 472 (591)
T ss_pred EEE
Confidence 665
No 342
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=91.41 E-value=3.3 Score=28.39 Aligned_cols=88 Identities=16% Similarity=0.149 Sum_probs=53.8
Q ss_pred ceEEEEEecCCCEEEEEecCCcEEEEEcCCCCC-c----CCc---------------------cc---ccccceeeeEEe
Q psy11100 16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKE-S----TGQ---------------------VA---AANVNLAMNQSL 66 (110)
Q Consensus 16 ~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~-~----~~~---------------------~~---~~~~~~~~~~~~ 66 (110)
.|+.+.|+++.--++.+...|.|-+|....... . ... .+ .-.+++.+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 578899999877788888899988876542210 0 000 00 112355566666
Q ss_pred eccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCC
Q psy11100 67 QGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCND 104 (110)
Q Consensus 67 ~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~ 104 (110)
....+.|..++.|.- -+++.+-.+|.+.+.|++....
T Consensus 83 ~~~~g~vtal~~S~i-GFvaigy~~G~l~viD~RGPav 119 (395)
T PF08596_consen 83 DAKQGPVTALKNSDI-GFVAIGYESGSLVVIDLRGPAV 119 (395)
T ss_dssp ---S-SEEEEEE-BT-SEEEEEETTSEEEEEETTTTEE
T ss_pred eccCCcEeEEecCCC-cEEEEEecCCcEEEEECCCCeE
Confidence 667899999998744 4677777899999999975543
No 343
>KOG2395|consensus
Probab=91.38 E-value=0.7 Score=32.77 Aligned_cols=66 Identities=14% Similarity=0.247 Sum_probs=45.0
Q ss_pred eEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEE
Q psy11100 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIV 96 (110)
Q Consensus 17 v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~ 96 (110)
..|.+-..+| +++.|+.+|.+++||--... .-..+.+-..+|..+..+.+|.+++..+.. .|.+
T Consensus 433 Fsc~aTT~sG-~IvvgS~~GdIRLYdri~~~--------------AKTAlPgLG~~I~hVdvtadGKwil~Tc~t-yLlL 496 (644)
T KOG2395|consen 433 FSCFATTESG-YIVVGSLKGDIRLYDRIGRR--------------AKTALPGLGDAIKHVDVTADGKWILATCKT-YLLL 496 (644)
T ss_pred cceeeecCCc-eEEEeecCCcEEeehhhhhh--------------hhhcccccCCceeeEEeeccCcEEEEeccc-EEEE
Confidence 3343333333 58889999999999874332 335566777899999999999997766644 4444
Q ss_pred Ee
Q psy11100 97 WM 98 (110)
Q Consensus 97 w~ 98 (110)
.+
T Consensus 497 i~ 498 (644)
T KOG2395|consen 497 ID 498 (644)
T ss_pred EE
Confidence 44
No 344
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=91.36 E-value=2.9 Score=27.61 Aligned_cols=70 Identities=9% Similarity=0.100 Sum_probs=39.0
Q ss_pred CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCc
Q psy11100 14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGL 93 (110)
Q Consensus 14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~ 93 (110)
.+.+..+.-+++|++++.+.....+.-|+.-... ....-......+..+.|+|++.+...+ ..+.
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~--------------w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~ 208 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT--------------WQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQ 208 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS---------------EEEE--SSS-EEEEEE-TTS-EEEEE-TTTE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCcc--------------ceEEccCccceehhceecCCCCEEEEe-CCcE
Confidence 3567777788999988888765555566554332 112222345789999999998875544 6777
Q ss_pred EEEEe
Q psy11100 94 IIVWM 98 (110)
Q Consensus 94 i~~w~ 98 (110)
|++-+
T Consensus 209 ~~~s~ 213 (302)
T PF14870_consen 209 IQFSD 213 (302)
T ss_dssp EEEEE
T ss_pred EEEcc
Confidence 77665
No 345
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=91.14 E-value=1.4 Score=29.40 Aligned_cols=27 Identities=11% Similarity=-0.177 Sum_probs=21.1
Q ss_pred CCCeEEEecCCCcEEEEeCCCCCChhh
Q psy11100 81 QYEKLTSSDETGLIIVWMLYKCNDDDE 107 (110)
Q Consensus 81 ~~~~l~s~~~~~~i~~w~~~~~~~~~~ 107 (110)
.+..++.++.+|.|.++|..+|+.+.+
T Consensus 319 ~g~~l~~~~~~G~l~~~d~~tG~~~~~ 345 (377)
T TIGR03300 319 VGGYLVVGDFEGYLHWLSREDGSFVAR 345 (377)
T ss_pred ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 355677788899999999988877544
No 346
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=91.11 E-value=3.3 Score=27.81 Aligned_cols=76 Identities=12% Similarity=0.120 Sum_probs=50.3
Q ss_pred CCceEEEEEecCCCEEEEEec-CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCC-
Q psy11100 14 NTKVNCLAWHQNQGWIAVGGD-DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET- 91 (110)
Q Consensus 14 ~~~v~~~~~~p~~~~l~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~- 91 (110)
.....+++.+|||++|.++.. ...+.+|.+.... +. +........+...-+.+.+++.+.+|+.+..+
T Consensus 243 ~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~---g~-------L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~s 312 (346)
T COG2706 243 TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG---GK-------LELVGITPTEGQFPRDFNINPSGRFLIAANQKS 312 (346)
T ss_pred CCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC---CE-------EEEEEEeccCCcCCccceeCCCCCEEEEEccCC
Confidence 456778999999999887764 2367777777543 01 11222233344446789999999998777654
Q ss_pred CcEEEEeC
Q psy11100 92 GLIIVWML 99 (110)
Q Consensus 92 ~~i~~w~~ 99 (110)
..|.++..
T Consensus 313 d~i~vf~~ 320 (346)
T COG2706 313 DNITVFER 320 (346)
T ss_pred CcEEEEEE
Confidence 45777754
No 347
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=91.11 E-value=0.72 Score=30.75 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=24.5
Q ss_pred CCceEEEEEecCCCEEEEEecCCcEEEEEcCCC
Q psy11100 14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTG 46 (110)
Q Consensus 14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~ 46 (110)
...+....|+|+|+.++... ++.|.+.+...+
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~ 73 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG 73 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCC
Confidence 35688899999999988865 578988877654
No 348
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=90.45 E-value=2.7 Score=28.15 Aligned_cols=26 Identities=4% Similarity=-0.174 Sum_probs=18.4
Q ss_pred CCeEEEecCCCcEEEEeCCCCCChhh
Q psy11100 82 YEKLTSSDETGLIIVWMLYKCNDDDE 107 (110)
Q Consensus 82 ~~~l~s~~~~~~i~~w~~~~~~~~~~ 107 (110)
+..++.+..++.|..+|.++|+.+.+
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG~~~W~ 170 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATGERLWT 170 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCCceeeE
Confidence 34455566788899999988876543
No 349
>KOG4460|consensus
Probab=90.16 E-value=4.7 Score=29.01 Aligned_cols=88 Identities=16% Similarity=0.174 Sum_probs=47.9
Q ss_pred ceEEEEEecCCCEEEEEecCCcEEEEEcCC-CC---CcCCccccc--ccceeeeEEeeccCCCeEEEEEcCCC---CeEE
Q psy11100 16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDT-GK---ESTGQVAAA--NVNLAMNQSLQGHSGKVRAIIWNEQY---EKLT 86 (110)
Q Consensus 16 ~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~-~~---~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~ 86 (110)
.|..+..++.|..++-.+.+|-+.+.-.+. +. ++++..-.. ..++....-.....-.+.-++|+|+. .++.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 466677899999888888888655532111 11 011110000 00000000011122346678999975 5576
Q ss_pred EecCCCcEEEEeCCCCC
Q psy11100 87 SSDETGLIIVWMLYKCN 103 (110)
Q Consensus 87 s~~~~~~i~~w~~~~~~ 103 (110)
.-..|..+++||..+..
T Consensus 185 iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEecCcEEEEEecCCcc
Confidence 77779999999987654
No 350
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=89.96 E-value=3.4 Score=29.90 Aligned_cols=31 Identities=16% Similarity=0.359 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCeEEEe-cCCCcEEEEeCC
Q psy11100 70 SGKVRAIIWNEQYEKLTSS-DETGLIIVWMLY 100 (110)
Q Consensus 70 ~~~v~~~~~s~~~~~l~s~-~~~~~i~~w~~~ 100 (110)
.+.|.|.+|.+||+.++-+ +..=.-++||-.
T Consensus 155 ~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 155 SGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred CceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 5789999999999985544 444456788754
No 351
>KOG3621|consensus
Probab=89.78 E-value=1.6 Score=31.86 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=53.4
Q ss_pred CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCC
Q psy11100 13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETG 92 (110)
Q Consensus 13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~ 92 (110)
+...|.-.+++-.+.+++.|+..|.|++++-..+. .......+..+.+.....|++..+++.++..|
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~-------------~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g 98 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGE-------------MRKLKNEGATGITCVRSVSSVEYLVAAGTASG 98 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchh-------------hhcccccCccceEEEEEecchhHhhhhhcCCc
Confidence 44445545566678999999999999999877654 01111222345556677788888888888889
Q ss_pred cEEEEeCCC
Q psy11100 93 LIIVWMLYK 101 (110)
Q Consensus 93 ~i~~w~~~~ 101 (110)
.|-++.+.+
T Consensus 99 ~V~v~ql~~ 107 (726)
T KOG3621|consen 99 RVSVFQLNK 107 (726)
T ss_pred eEEeehhhc
Confidence 888887665
No 352
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=89.77 E-value=6.3 Score=28.87 Aligned_cols=69 Identities=10% Similarity=0.208 Sum_probs=44.4
Q ss_pred eEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEE--cCCCCeEEEecCCCcE
Q psy11100 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIW--NEQYEKLTSSDETGLI 94 (110)
Q Consensus 17 v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~~~~~l~s~~~~~~i 94 (110)
...+.-+.-+...+.-+....+.|||..... ++....+ ...+.|.++.| .|+++.+++.+-...|
T Consensus 32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~------------lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v 98 (631)
T PF12234_consen 32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGV------------LEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHV 98 (631)
T ss_pred cceEeecccCcEEEEECCCCEEEEEEcCCcE------------EEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEE
Confidence 3334444444443444445578999998764 1122222 34678899999 4689999999988888
Q ss_pred EEEe
Q psy11100 95 IVWM 98 (110)
Q Consensus 95 ~~w~ 98 (110)
.++.
T Consensus 99 ~l~~ 102 (631)
T PF12234_consen 99 LLYT 102 (631)
T ss_pred EEEE
Confidence 8874
No 353
>KOG1275|consensus
Probab=89.56 E-value=3.3 Score=31.52 Aligned_cols=75 Identities=16% Similarity=0.207 Sum_probs=49.4
Q ss_pred EEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEE
Q psy11100 18 NCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIV 96 (110)
Q Consensus 18 ~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~ 96 (110)
.-+.|+|. ...++..+..|...+-|.....- ++ .....+..-...+..+.+|+.+..++.+..+|.|.+
T Consensus 269 ~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsN-------P~---~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~ 338 (1118)
T KOG1275|consen 269 QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSN-------PP---AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNL 338 (1118)
T ss_pred hhhhhcccccceEEEEecccceeeccccccCC-------Cc---cceeEEccCCCcceeEEecCCCceEEEecccCcEee
Confidence 44677886 34566777778777766332210 00 012223334556889999999999999999999999
Q ss_pred EeCCCC
Q psy11100 97 WMLYKC 102 (110)
Q Consensus 97 w~~~~~ 102 (110)
|.-...
T Consensus 339 wa~~~~ 344 (1118)
T KOG1275|consen 339 WADRPQ 344 (1118)
T ss_pred ecCCCC
Confidence 974433
No 354
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.26 E-value=0.76 Score=28.75 Aligned_cols=29 Identities=24% Similarity=0.237 Sum_probs=23.9
Q ss_pred EcCCCCeEEEecCCCcEEEEeCCCCCChh
Q psy11100 78 WNEQYEKLTSSDETGLIIVWMLYKCNDDD 106 (110)
Q Consensus 78 ~s~~~~~l~s~~~~~~i~~w~~~~~~~~~ 106 (110)
+...+.++...+.+|.+++||+.+++...
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~ 46 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVL 46 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeecc
Confidence 34578888899999999999999887654
No 355
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=89.14 E-value=4.9 Score=26.68 Aligned_cols=34 Identities=26% Similarity=0.349 Sum_probs=27.6
Q ss_pred CCceEEEEEecCCCEEEEEe-cCCcEEEEEcCCCC
Q psy11100 14 NTKVNCLAWHQNQGWIAVGG-DDGLLKVLKLDTGK 47 (110)
Q Consensus 14 ~~~v~~~~~~p~~~~l~~~~-~~~~v~~~~~~~~~ 47 (110)
.+++-++++++++..++..+ ..+.+.+||..++.
T Consensus 216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~ 250 (305)
T PF07433_consen 216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR 250 (305)
T ss_pred CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC
Confidence 47899999999998765554 56789999999876
No 356
>KOG3617|consensus
Probab=88.96 E-value=0.93 Score=34.20 Aligned_cols=36 Identities=11% Similarity=0.315 Sum_probs=32.3
Q ss_pred ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcC
Q psy11100 9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLD 44 (110)
Q Consensus 9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~ 44 (110)
...+|..++.-+.||++|..+.++..-|.|.+|...
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 344799999999999999999999999999999876
No 357
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=88.72 E-value=1.2 Score=19.32 Aligned_cols=28 Identities=11% Similarity=0.261 Sum_probs=17.8
Q ss_pred CCCeEEEEEcCCCCeEEEec-CC--CcEEEE
Q psy11100 70 SGKVRAIIWNEQYEKLTSSD-ET--GLIIVW 97 (110)
Q Consensus 70 ~~~v~~~~~s~~~~~l~s~~-~~--~~i~~w 97 (110)
...-....|||+|+.|+-++ .+ |...+|
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34556889999999866444 44 555554
No 358
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=88.49 E-value=5.5 Score=26.45 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=31.5
Q ss_pred CCCeEEEEEcCCCCeE-EEecCCCcEEEEeCCCCCChhh
Q psy11100 70 SGKVRAIIWNEQYEKL-TSSDETGLIIVWMLYKCNDDDE 107 (110)
Q Consensus 70 ~~~v~~~~~s~~~~~l-~s~~~~~~i~~w~~~~~~~~~~ 107 (110)
.+.+-++++++++..+ +|+-..+.+.+||..+++.+..
T Consensus 216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGS 254 (305)
T ss_pred CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeec
Confidence 4778899999999875 5666788999999999987654
No 359
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.17 E-value=4.5 Score=26.85 Aligned_cols=56 Identities=11% Similarity=0.141 Sum_probs=37.9
Q ss_pred EEecCCCEEEEEecC-----CcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100 21 AWHQNQGWIAVGGDD-----GLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 21 ~~~p~~~~l~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 89 (110)
.|||||.+|...-.| |.+=+||..... +....+..|.-....+.|.+||+.++.+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~f-------------qrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGF-------------QRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEeccccc-------------ceecccccCCcCcceeEEecCCcEEEEeC
Confidence 468888887654333 456778877543 23455566666667889999999877664
No 360
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=86.74 E-value=3.9 Score=22.89 Aligned_cols=66 Identities=17% Similarity=0.165 Sum_probs=38.9
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEE---cCCCCe-EEE
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIW---NEQYEK-LTS 87 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---s~~~~~-l~s 87 (110)
..++.|+.+.-... ..++.+..+|+|-+|+-.... =..+.. ..+.++++ +.+|.. |++
T Consensus 40 ~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl----------------WRiKSK-~~~~~~~~~D~~gdG~~eLI~ 101 (111)
T PF14783_consen 40 TETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL----------------WRIKSK-NQVTSMAFYDINGDGVPELIV 101 (111)
T ss_pred ecccceEEEEEcCC-CEEEEEecCCEEEEEeCccee----------------eeeccC-CCeEEEEEEcCCCCCceEEEE
Confidence 34567777765554 557888888988887654321 111221 22334433 345555 888
Q ss_pred ecCCCcEE
Q psy11100 88 SDETGLII 95 (110)
Q Consensus 88 ~~~~~~i~ 95 (110)
+..+|.|-
T Consensus 102 GwsnGkve 109 (111)
T PF14783_consen 102 GWSNGKVE 109 (111)
T ss_pred EecCCeEE
Confidence 88888774
No 361
>KOG2066|consensus
Probab=86.53 E-value=3.3 Score=30.88 Aligned_cols=66 Identities=18% Similarity=0.310 Sum_probs=43.1
Q ss_pred eEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEE
Q psy11100 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIV 96 (110)
Q Consensus 17 v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~ 96 (110)
++|++++ +..++.|..+|.+++.+..... .+...|+.. ..+|+.+++|+.||.+.+
T Consensus 42 is~~av~--~~~~~~GtH~g~v~~~~~~~~~----------------~~~~~~s~~------~~~Gey~asCS~DGkv~I 97 (846)
T KOG2066|consen 42 ISCCAVH--DKFFALGTHRGAVYLTTCQGNP----------------KTNFDHSSS------ILEGEYVASCSDDGKVVI 97 (846)
T ss_pred HHHHHhh--cceeeeccccceEEEEecCCcc----------------ccccccccc------ccCCceEEEecCCCcEEE
Confidence 4444443 5678888888888888766442 112222221 557899999999999888
Q ss_pred EeCCCCCChh
Q psy11100 97 WMLYKCNDDD 106 (110)
Q Consensus 97 w~~~~~~~~~ 106 (110)
.-+-+++...
T Consensus 98 ~sl~~~~~~~ 107 (846)
T KOG2066|consen 98 GSLFTDDEIT 107 (846)
T ss_pred eeccCCccce
Confidence 7776665543
No 362
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=86.09 E-value=9 Score=26.41 Aligned_cols=36 Identities=22% Similarity=0.482 Sum_probs=26.5
Q ss_pred EEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCC
Q psy11100 64 QSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLY 100 (110)
Q Consensus 64 ~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~ 100 (110)
..+.-..+.+.++.|+.+. .|+....+|.++++|+.
T Consensus 74 ~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 74 SSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence 3343334788999998854 45567789999999985
No 363
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=85.91 E-value=9.2 Score=26.33 Aligned_cols=73 Identities=19% Similarity=0.291 Sum_probs=45.7
Q ss_pred CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEE--eec------cCCCeEEEEEcC----
Q psy11100 13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQS--LQG------HSGKVRAIIWNE---- 80 (110)
Q Consensus 13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------~~~~v~~~~~s~---- 80 (110)
.+++|++++.| |=-+++.|..+|.+.+.|++... .+.. +.. ....+.++.|+.
T Consensus 85 ~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPa--------------vI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~ 149 (395)
T PF08596_consen 85 KQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPA--------------VIYNENIRESFLSKSSSSYVTSIEFSVMTLG 149 (395)
T ss_dssp -S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTE--------------EEEEEEGGG--T-SS----EEEEEEEEEE-T
T ss_pred cCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCe--------------EEeeccccccccccccccCeeEEEEEEEecC
Confidence 47899999987 44478999999999999997654 2222 111 234566777752
Q ss_pred -CC---CeEEEecCCCcEEEEeCC
Q psy11100 81 -QY---EKLTSSDETGLIIVWMLY 100 (110)
Q Consensus 81 -~~---~~l~s~~~~~~i~~w~~~ 100 (110)
|+ -.+..+...|.+.+|.+-
T Consensus 150 ~D~ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 150 GDGYSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp TSSSEEEEEEEEETTSEEEEEEEE
T ss_pred CCcccceEEEEEeCCCCEEEEEEe
Confidence 33 236677778888888653
No 364
>KOG1920|consensus
Probab=85.87 E-value=5.3 Score=31.26 Aligned_cols=79 Identities=16% Similarity=0.208 Sum_probs=49.4
Q ss_pred CCceEEEEEecCCCEEEEEec---CCcEEEEEcCCCCCcCCcccccccceeeeEEee--ccCCCeEEEEEcCCCCeEEE-
Q psy11100 14 NTKVNCLAWHQNQGWIAVGGD---DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQ--GHSGKVRAIIWNEQYEKLTS- 87 (110)
Q Consensus 14 ~~~v~~~~~~p~~~~l~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s- 87 (110)
.+.-.+++|-|.|.++++... +..|.++.-+.... -.+.+. .....+..++|+.++..|+.
T Consensus 241 ~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~h-------------g~f~l~~p~de~~ve~L~Wns~sdiLAv~ 307 (1265)
T KOG1920|consen 241 EGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRH-------------GEFVLPFPLDEKEVEELAWNSNSDILAVV 307 (1265)
T ss_pred cccccceeecCCCCeEeeeeecCCCCcEEEEecCCccc-------------cccccCCcccccchheeeecCCCCceeee
Confidence 344567899999998887644 34566665443320 011111 12233789999999999877
Q ss_pred --ecCCCcEEEEeCCCCCCh
Q psy11100 88 --SDETGLIIVWMLYKCNDD 105 (110)
Q Consensus 88 --~~~~~~i~~w~~~~~~~~ 105 (110)
......|++|...+-.|.
T Consensus 308 ~~~~e~~~v~lwt~~NyhWY 327 (1265)
T KOG1920|consen 308 TSNLENSLVQLWTTGNYHWY 327 (1265)
T ss_pred ecccccceEEEEEecCeEEE
Confidence 334445999987765543
No 365
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=85.47 E-value=8.5 Score=25.54 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=22.5
Q ss_pred CCCCceEEEEEecCCCEEEEEecC-CcEEEEEcC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDD-GLLKVLKLD 44 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~-~~v~~~~~~ 44 (110)
.+-..-+.++||||++.+...... +.+..++..
T Consensus 160 ~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 160 DDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred CcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 344455669999999877666543 566666665
No 366
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=85.11 E-value=3.2 Score=27.12 Aligned_cols=56 Identities=14% Similarity=0.184 Sum_probs=37.5
Q ss_pred CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec------CCCcEEEEeCCCCCC
Q psy11100 35 DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD------ETGLIIVWMLYKCND 104 (110)
Q Consensus 35 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~------~~~~i~~w~~~~~~~ 104 (110)
+..+++||..... ....-.+-.+.|..+.|..+.++++.+. ....+-.||+.+..+
T Consensus 15 C~~lC~yd~~~~q--------------W~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w 76 (281)
T PF12768_consen 15 CPGLCLYDTDNSQ--------------WSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW 76 (281)
T ss_pred CCEEEEEECCCCE--------------eecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence 4568999987654 2222233457899999987777777775 344577888877655
No 367
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=84.84 E-value=4.3 Score=24.96 Aligned_cols=67 Identities=16% Similarity=0.091 Sum_probs=36.8
Q ss_pred CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCC
Q psy11100 25 NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCND 104 (110)
Q Consensus 25 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~ 104 (110)
++..+.++..++.+..+|..++. .+-..... ..+.... ...+..++.+..++.+..+|..+|+.
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~--------------~~W~~~~~-~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~ 98 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGK--------------VLWRFDLP-GPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKV 98 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSE--------------EEEEEECS-SCGGSGE-EEETTEEEEEETTSEEEEEETTTSCE
T ss_pred eCCEEEEEcCCCEEEEEECCCCC--------------EEEEeecc-cccccee-eecccccccccceeeeEecccCCcce
Confidence 45556666788999999998775 22222211 1100001 11233444444566888888887776
Q ss_pred hhh
Q psy11100 105 DDE 107 (110)
Q Consensus 105 ~~~ 107 (110)
+.+
T Consensus 99 ~W~ 101 (238)
T PF13360_consen 99 LWS 101 (238)
T ss_dssp EEE
T ss_pred eee
Confidence 544
No 368
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=84.69 E-value=4.5 Score=27.71 Aligned_cols=70 Identities=14% Similarity=0.036 Sum_probs=31.5
Q ss_pred EEEEecCCCEEEE-EecCC--cEEEEEcCCCCCcCCcccccccceeeeEEeeccC-CCeEEEEEcCCCCeEEEecCCCcE
Q psy11100 19 CLAWHQNQGWIAV-GGDDG--LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHS-GKVRAIIWNEQYEKLTSSDETGLI 94 (110)
Q Consensus 19 ~~~~~p~~~~l~~-~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~s~~~~~~i 94 (110)
.-+|.++|+.|+. +..+| .+...|+.+.. +.++.... .......++|++..++-......|
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~---------------i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l 104 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGE---------------ITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSL 104 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS-EEEEEETTT-E---------------EEE---SS-B-TTT-EE-TTSSEEEEEETTTEE
T ss_pred CCCcCCCCCEEEEEeccCCCcceEEEEcccCE---------------EEECccCCCCCccceEEecCCCeEEEEECCCeE
Confidence 3466788876544 44455 45566776664 23333221 212235556777766555555566
Q ss_pred EEEeCCCCC
Q psy11100 95 IVWMLYKCN 103 (110)
Q Consensus 95 ~~w~~~~~~ 103 (110)
+-.|+.+..
T Consensus 105 ~~vdL~T~e 113 (386)
T PF14583_consen 105 RRVDLDTLE 113 (386)
T ss_dssp EEEETTT--
T ss_pred EEEECCcCc
Confidence 666766543
No 369
>PRK10115 protease 2; Provisional
Probab=84.65 E-value=14 Score=27.38 Aligned_cols=72 Identities=11% Similarity=0.106 Sum_probs=42.0
Q ss_pred ceEEEEEecCCCEEEEEecC-C----cEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe-c
Q psy11100 16 KVNCLAWHQNQGWIAVGGDD-G----LLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS-D 89 (110)
Q Consensus 16 ~v~~~~~~p~~~~l~~~~~~-~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~ 89 (110)
.+....++|+|++++.+... | .+++.|+.++.. ....+.. .-..++|.+++..|+-. .
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~-------------l~~~i~~---~~~~~~w~~D~~~~~y~~~ 191 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW-------------YPELLDN---VEPSFVWANDSWTFYYVRK 191 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC-------------CCccccC---cceEEEEeeCCCEEEEEEe
Confidence 46668889999987766432 3 466777765430 0111111 11458999988764433 2
Q ss_pred CC-----CcEEEEeCCCCC
Q psy11100 90 ET-----GLIIVWMLYKCN 103 (110)
Q Consensus 90 ~~-----~~i~~w~~~~~~ 103 (110)
.+ ..++.+++.++.
T Consensus 192 ~~~~~~~~~v~~h~lgt~~ 210 (686)
T PRK10115 192 HPVTLLPYQVWRHTIGTPA 210 (686)
T ss_pred cCCCCCCCEEEEEECCCCh
Confidence 22 356677777663
No 370
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=84.56 E-value=5.4 Score=28.33 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=24.1
Q ss_pred CceEEEEEec----CCCEEEEEecCCcEEEEEcCCCC
Q psy11100 15 TKVNCLAWHQ----NQGWIAVGGDDGLLKVLKLDTGK 47 (110)
Q Consensus 15 ~~v~~~~~~p----~~~~l~~~~~~~~v~~~~~~~~~ 47 (110)
+.+...+.++ +..++++.+.|+.+|+||+.+..
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~ 251 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQ 251 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTC
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCe
Confidence 3455566666 67789999999999999999875
No 371
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=84.46 E-value=5.2 Score=28.75 Aligned_cols=60 Identities=12% Similarity=0.201 Sum_probs=42.5
Q ss_pred CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCC
Q psy11100 26 QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLY 100 (110)
Q Consensus 26 ~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~ 100 (110)
.-+++.++..|-+++||--..+ .-..+.+-...|..+..+.+|.++++.+ ...|.+.|++
T Consensus 573 sGyIa~as~kGDirLyDRig~r--------------AKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRIGKR--------------AKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred CceEEEecCCCceeeehhhcch--------------hhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 3468888999999999865544 3344556677888999999999966555 3456666653
No 372
>KOG1832|consensus
Probab=84.07 E-value=2.3 Score=32.45 Aligned_cols=41 Identities=12% Similarity=0.206 Sum_probs=36.1
Q ss_pred EEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCC
Q psy11100 64 QSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCND 104 (110)
Q Consensus 64 ~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~ 104 (110)
..+..++....+++|+-+.++++-|...|.|+++++.+|.-
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~ 1135 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM 1135 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc
Confidence 45666778889999999999999999999999999998864
No 373
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=83.86 E-value=7.8 Score=23.80 Aligned_cols=68 Identities=21% Similarity=0.142 Sum_probs=37.9
Q ss_pred CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEe-ecc---CCCeEEEEEcCCCCeEEEecCCCcEEEEeCCC
Q psy11100 26 QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL-QGH---SGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK 101 (110)
Q Consensus 26 ~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~ 101 (110)
+..+..+..++.+..+|..++. .+-.. ... ............+..++.+..++.|..+|+++
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~--------------~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~t 141 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGK--------------VLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKT 141 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSC--------------EEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTT
T ss_pred ccccccccceeeeEecccCCcc--------------eeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCC
Confidence 3334455566778888877765 22221 111 01112222222366677777789999999998
Q ss_pred CCChhh
Q psy11100 102 CNDDDE 107 (110)
Q Consensus 102 ~~~~~~ 107 (110)
|+.+.+
T Consensus 142 G~~~w~ 147 (238)
T PF13360_consen 142 GKLLWK 147 (238)
T ss_dssp TEEEEE
T ss_pred CcEEEE
Confidence 876543
No 374
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=83.04 E-value=13 Score=25.68 Aligned_cols=31 Identities=29% Similarity=0.266 Sum_probs=26.5
Q ss_pred CCceEEEEEecCCCEEEEEecCCcEEEEEcC
Q psy11100 14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLD 44 (110)
Q Consensus 14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~ 44 (110)
.+++..++.||+|+++|....+|.+.+....
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSD 246 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence 3689999999999999999888998887654
No 375
>KOG1645|consensus
Probab=83.04 E-value=1.3 Score=30.43 Aligned_cols=44 Identities=18% Similarity=0.089 Sum_probs=34.9
Q ss_pred eeEEeeccCCCeEEEEEcCCCC-eEEEecCCCcEEEEeCCCCCCh
Q psy11100 62 MNQSLQGHSGKVRAIIWNEQYE-KLTSSDETGLIIVWMLYKCNDD 105 (110)
Q Consensus 62 ~~~~~~~~~~~v~~~~~s~~~~-~l~s~~~~~~i~~w~~~~~~~~ 105 (110)
.+..+..+...|.+++|||..+ ++..++.+..|.+.|+++...+
T Consensus 185 ssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v 229 (463)
T KOG1645|consen 185 SSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV 229 (463)
T ss_pred hhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceee
Confidence 3445666778899999999887 4777888999999999876544
No 376
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=82.20 E-value=2.1 Score=18.68 Aligned_cols=26 Identities=8% Similarity=-0.112 Sum_probs=15.1
Q ss_pred CCCCe-EEEecCCCcEEEEeCCCCCCh
Q psy11100 80 EQYEK-LTSSDETGLIIVWMLYKCNDD 105 (110)
Q Consensus 80 ~~~~~-l~s~~~~~~i~~w~~~~~~~~ 105 (110)
|+++. +++...++.|.++|..++..+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~ 27 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVI 27 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEE
Confidence 34554 344445677777777665544
No 377
>PRK13616 lipoprotein LpqB; Provisional
Probab=81.18 E-value=18 Score=26.42 Aligned_cols=76 Identities=13% Similarity=0.146 Sum_probs=40.6
Q ss_pred CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEee-ccCCCeEEEEEcCCCCeEEEecCCC
Q psy11100 14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQ-GHSGKVRAIIWNEQYEKLTSSDETG 92 (110)
Q Consensus 14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~~~ 92 (110)
.+.|..+.|+|||..++... ++.|.+--+.... .+.. ... ....+. .-...+..+.|..++.+++. ..++
T Consensus 447 ~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~--~G~~-~l~----~~~~l~~~l~~~~~~l~W~~~~~L~V~-~~~~ 517 (591)
T PRK13616 447 PGPISELQLSRDGVRAAMII-GGKVYLAVVEQTE--DGQY-ALT----NPREVGPGLGDTAVSLDWRTGDSLVVG-RSDP 517 (591)
T ss_pred CCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCC--CCce-eec----ccEEeecccCCccccceEecCCEEEEE-ecCC
Confidence 45799999999999877765 4667663332211 0000 000 011122 22334578899999886533 3333
Q ss_pred cEEEEe
Q psy11100 93 LIIVWM 98 (110)
Q Consensus 93 ~i~~w~ 98 (110)
.-.+|.
T Consensus 518 ~~~v~~ 523 (591)
T PRK13616 518 EHPVWY 523 (591)
T ss_pred CCceEE
Confidence 333444
No 378
>KOG4499|consensus
Probab=81.06 E-value=8.6 Score=24.88 Aligned_cols=34 Identities=9% Similarity=-0.157 Sum_probs=27.8
Q ss_pred EEEcCCCCeEEEecCCCcEEEEeCCCCCChhhhh
Q psy11100 76 IIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEWK 109 (110)
Q Consensus 76 ~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~~~~ 109 (110)
++..-+|.+++.+-..+++...|+.+|+.+.|+|
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik 250 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK 250 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE
Confidence 4445578888888889999999999999988765
No 379
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=80.68 E-value=3 Score=17.15 Aligned_cols=24 Identities=4% Similarity=-0.188 Sum_probs=17.7
Q ss_pred eEEEecCCCcEEEEeCCCCCChhh
Q psy11100 84 KLTSSDETGLIIVWMLYKCNDDDE 107 (110)
Q Consensus 84 ~l~s~~~~~~i~~w~~~~~~~~~~ 107 (110)
.+..++.++.+..+|.++|+...+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 455666788999999888876544
No 380
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=80.20 E-value=15 Score=24.46 Aligned_cols=35 Identities=14% Similarity=0.107 Sum_probs=23.2
Q ss_pred eeccCCCeEEEEEcCCCCeEEEecC-CCcEEEEeCC
Q psy11100 66 LQGHSGKVRAIIWNEQYEKLTSSDE-TGLIIVWMLY 100 (110)
Q Consensus 66 ~~~~~~~v~~~~~s~~~~~l~s~~~-~~~i~~w~~~ 100 (110)
...+-..-+.++|||+++.+..+.. .+.|.-+++.
T Consensus 158 ~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 158 LDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred ecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 3333445578999999987666654 4667766654
No 381
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=78.29 E-value=18 Score=27.82 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=27.6
Q ss_pred ccCCCCCceEEEEEecCCCEEEE-EecCC-----cEEEEEcCCCC
Q psy11100 9 IAIPNNTKVNCLAWHQNQGWIAV-GGDDG-----LLKVLKLDTGK 47 (110)
Q Consensus 9 ~~~~h~~~v~~~~~~p~~~~l~~-~~~~~-----~v~~~~~~~~~ 47 (110)
+.+.++..+....|||||+.++. .+..+ .|.+.++.+..
T Consensus 344 ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~ 388 (912)
T TIGR02171 344 VEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASG 388 (912)
T ss_pred EEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccC
Confidence 33566778888999999999887 33322 47777777643
No 382
>KOG2114|consensus
Probab=77.74 E-value=29 Score=26.57 Aligned_cols=78 Identities=14% Similarity=0.141 Sum_probs=48.2
Q ss_pred CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCC
Q psy11100 13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETG 92 (110)
Q Consensus 13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~ 92 (110)
...++.+++.+.+-..+++|-.+|.|..+.-+-.++.-. .......-..+|+.+++..++..++-+....
T Consensus 124 ~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs----------r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~ 193 (933)
T KOG2114|consen 124 NPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGS----------RQDYSHRGKEPITGLALRSDGKSVLFVATTE 193 (933)
T ss_pred CCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccc----------ceeeeccCCCCceeeEEecCCceeEEEEecc
Confidence 456788899999989999999999998875543331000 0111112245678888877776633333345
Q ss_pred cEEEEeCC
Q psy11100 93 LIIVWMLY 100 (110)
Q Consensus 93 ~i~~w~~~ 100 (110)
.|.+|.+.
T Consensus 194 ~V~~y~l~ 201 (933)
T KOG2114|consen 194 QVMLYSLS 201 (933)
T ss_pred eeEEEEec
Confidence 56666554
No 383
>KOG2114|consensus
Probab=76.78 E-value=32 Score=26.42 Aligned_cols=74 Identities=5% Similarity=0.046 Sum_probs=47.3
Q ss_pred CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCC
Q psy11100 13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETG 92 (110)
Q Consensus 13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~ 92 (110)
..++|+.+++..++..+........|.+|.+.... + ....+..+...++|..+++...-+++++ +.
T Consensus 170 ~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-----p--------~~~~ld~~G~~lnCss~~~~t~qfIca~-~e 235 (933)
T KOG2114|consen 170 GKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-----P--------SLKVLDNNGISLNCSSFSDGTYQFICAG-SE 235 (933)
T ss_pred CCCCceeeEEecCCceeEEEEecceeEEEEecCCC-----c--------ceeeeccCCccceeeecCCCCccEEEec-Cc
Confidence 45689999998888764444445678888877332 0 2334556666778888877655454443 45
Q ss_pred cEEEEeCC
Q psy11100 93 LIIVWMLY 100 (110)
Q Consensus 93 ~i~~w~~~ 100 (110)
.+.+|+..
T Consensus 236 ~l~fY~sd 243 (933)
T KOG2114|consen 236 FLYFYDSD 243 (933)
T ss_pred eEEEEcCC
Confidence 66777654
No 384
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=76.55 E-value=28 Score=25.73 Aligned_cols=80 Identities=13% Similarity=0.139 Sum_probs=51.0
Q ss_pred CCCCceEEEEEe--cCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEe--eccC-CCeEEEEEcCCCCeEE
Q psy11100 12 PNNTKVNCLAWH--QNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL--QGHS-GKVRAIIWNEQYEKLT 86 (110)
Q Consensus 12 ~h~~~v~~~~~~--p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~v~~~~~s~~~~~l~ 86 (110)
...+.|.++.|. |+|+.+.+-+....|.++......+.+..+ .+..+..+ ..++ ..|.+..|-++|..++
T Consensus 70 ~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p-----~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV 144 (631)
T PF12234_consen 70 SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGP-----SWAPIRKIDISSHTPHPIGDSIWLKDGTLVV 144 (631)
T ss_pred cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCc-----ccceeEEEEeecCCCCCccceeEecCCeEEE
Confidence 446789998884 578888887888888888664332211111 12223322 3344 6789999999999876
Q ss_pred EecCCCcEEEEe
Q psy11100 87 SSDETGLIIVWM 98 (110)
Q Consensus 87 s~~~~~~i~~w~ 98 (110)
.++ +.+.+++
T Consensus 145 ~sG--Nqlfv~d 154 (631)
T PF12234_consen 145 GSG--NQLFVFD 154 (631)
T ss_pred EeC--CEEEEEC
Confidence 664 4555554
No 385
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.73 E-value=21 Score=23.82 Aligned_cols=35 Identities=11% Similarity=0.098 Sum_probs=23.7
Q ss_pred CCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTG 46 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~ 46 (110)
+-++.++++.|+|+.+.|.+........++-...+
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~G 117 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEG 117 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCC
Confidence 45566999999999887766655555555444444
No 386
>PF10008 DUF2251: Uncharacterized protein conserved in bacteria (DUF2251); InterPro: IPR014449 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=73.38 E-value=13 Score=20.31 Aligned_cols=45 Identities=11% Similarity=0.200 Sum_probs=27.4
Q ss_pred ceeeeeeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCC
Q psy11100 2 FIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTG 46 (110)
Q Consensus 2 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~ 46 (110)
.+|....+...|......+.|+.|+...+..-.+..--++|....
T Consensus 42 ~IYNv~~v~~~~~~~~~~I~Wsedg~~a~L~Ingy~hA~FDF~~~ 86 (97)
T PF10008_consen 42 HIYNVEDVSDKDEPRIVSICWSEDGQKAALLINGYPHAVFDFANH 86 (97)
T ss_pred EEEeeccccCCCCCceEEEEEcccccEEEEEECCcEEEEEEeccc
Confidence 455555666667777777888888775544333333445666544
No 387
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=71.72 E-value=23 Score=22.49 Aligned_cols=60 Identities=18% Similarity=0.202 Sum_probs=37.2
Q ss_pred CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCC
Q psy11100 25 NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYK 101 (110)
Q Consensus 25 ~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~ 101 (110)
.++.|+.|..+| +.+++..... ...... +...|..+..-|+-..++.-+ |+.+.++++..
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~--------------~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~ 65 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPS--------------KPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDS 65 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCc--------------cceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchh
Confidence 477888888888 8888883222 011111 122277777777766655554 48899888654
No 388
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=71.39 E-value=26 Score=23.77 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=14.9
Q ss_pred CCEEEEEecCCcEEEEEcCCCC
Q psy11100 26 QGWIAVGGDDGLLKVLKLDTGK 47 (110)
Q Consensus 26 ~~~l~~~~~~~~v~~~~~~~~~ 47 (110)
+..+..++.++.+..+|..+++
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~ 141 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGE 141 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCC
Confidence 3345566677788888887665
No 389
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=70.70 E-value=5.6 Score=17.24 Aligned_cols=21 Identities=5% Similarity=-0.176 Sum_probs=15.2
Q ss_pred EecCCCcEEEEeCCCCCChhh
Q psy11100 87 SSDETGLIIVWMLYKCNDDDE 107 (110)
Q Consensus 87 s~~~~~~i~~w~~~~~~~~~~ 107 (110)
.++.+|.|.-.|.++|+.+.+
T Consensus 5 ~~~~~g~l~AlD~~TG~~~W~ 25 (38)
T PF01011_consen 5 VGTPDGYLYALDAKTGKVLWK 25 (38)
T ss_dssp EETTTSEEEEEETTTTSEEEE
T ss_pred EeCCCCEEEEEECCCCCEEEe
Confidence 347788888888888876544
No 390
>KOG4649|consensus
Probab=69.67 E-value=29 Score=22.93 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=21.8
Q ss_pred EecCCCEEEEEecCCcEEEEEcCCCC
Q psy11100 22 WHQNQGWIAVGGDDGLLKVLKLDTGK 47 (110)
Q Consensus 22 ~~p~~~~l~~~~~~~~v~~~~~~~~~ 47 (110)
..+++..+-+|+.|+.....|.+...
T Consensus 101 ~d~~~glIycgshd~~~yalD~~~~~ 126 (354)
T KOG4649|consen 101 CDFDGGLIYCGSHDGNFYALDPKTYG 126 (354)
T ss_pred EcCCCceEEEecCCCcEEEecccccc
Confidence 46788899999999999998887654
No 391
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=69.65 E-value=18 Score=27.06 Aligned_cols=35 Identities=14% Similarity=0.369 Sum_probs=28.5
Q ss_pred CCCceEEEEEecC---CCEEEEEecCCcEEEEEcCCCC
Q psy11100 13 NNTKVNCLAWHQN---QGWIAVGGDDGLLKVLKLDTGK 47 (110)
Q Consensus 13 h~~~v~~~~~~p~---~~~l~~~~~~~~v~~~~~~~~~ 47 (110)
+...|..+.|+|. +..|+.-..|+.+++||+....
T Consensus 145 ~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 145 SSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 4468899999996 4678888889999999997544
No 392
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=68.64 E-value=36 Score=26.32 Aligned_cols=35 Identities=11% Similarity=-0.090 Sum_probs=25.6
Q ss_pred eccCCCeEEEEEcCCCCeEEE-ecC-----CCcEEEEeCCC
Q psy11100 67 QGHSGKVRAIIWNEQYEKLTS-SDE-----TGLIIVWMLYK 101 (110)
Q Consensus 67 ~~~~~~v~~~~~s~~~~~l~s-~~~-----~~~i~~w~~~~ 101 (110)
-.+...+.+.+|||||+.++- .+. ...|++-|+.+
T Consensus 346 ~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t 386 (912)
T TIGR02171 346 IEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNA 386 (912)
T ss_pred ecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhc
Confidence 345677889999999999887 332 33488888764
No 393
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=68.41 E-value=31 Score=24.30 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=19.1
Q ss_pred CceEEEEEecCCCEEEEEecCCcEEEEEcC
Q psy11100 15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLD 44 (110)
Q Consensus 15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~ 44 (110)
.....+.++|+|+.++. +.+|...++...
T Consensus 33 ~~p~~ls~npngr~v~V-~g~geY~iyt~~ 61 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLV-CGDGEYEIYTAL 61 (443)
T ss_dssp S--SEEEE-TTSSEEEE-EETTEEEEEETT
T ss_pred cCCeeEEECCCCCEEEE-EcCCEEEEEEcc
Confidence 45778999999998877 446666666643
No 394
>KOG3630|consensus
Probab=67.94 E-value=8.2 Score=30.37 Aligned_cols=72 Identities=15% Similarity=0.064 Sum_probs=45.2
Q ss_pred CceEEEEEecCCC-EEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCc
Q psy11100 15 TKVNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGL 93 (110)
Q Consensus 15 ~~v~~~~~~p~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~ 93 (110)
.-..++.|.|.-. ..+....|+.+++..+..... .... ..-...+.+++|+|.|..++.+...|+
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~-------------~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt 221 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQ-------------NVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGT 221 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhh-------------hhcc-cCcccceeeEEeccccceeeEecCCCe
Confidence 3455677777522 234445567777665553320 0111 123456789999999999999999998
Q ss_pred EEEEeCC
Q psy11100 94 IIVWMLY 100 (110)
Q Consensus 94 i~~w~~~ 100 (110)
+.-|.+.
T Consensus 222 ~vQy~P~ 228 (1405)
T KOG3630|consen 222 EVQYEPS 228 (1405)
T ss_pred EEEeecc
Confidence 8777543
No 395
>KOG1008|consensus
Probab=66.63 E-value=5.5 Score=29.24 Aligned_cols=71 Identities=10% Similarity=0.105 Sum_probs=42.0
Q ss_pred ceEEEEEec-CCCEEEEEecCCcEEEEEc-CCCCCcCCcccccccceeeeEEeeccC----CCeEEEEEcCCCCe-EEEe
Q psy11100 16 KVNCLAWHQ-NQGWIAVGGDDGLLKVLKL-DTGKESTGQVAAANVNLAMNQSLQGHS----GKVRAIIWNEQYEK-LTSS 88 (110)
Q Consensus 16 ~v~~~~~~p-~~~~l~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~-l~s~ 88 (110)
.+..+...| .+.++++.. ++.+-+||. .... . ++..+.... .++..++|.|...- +++.
T Consensus 197 ~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnie---n----------pl~~i~~~~N~~~~~l~~~aycPtrtglla~l 262 (783)
T KOG1008|consen 197 YVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIE---N----------PLQIILRNENKKPKQLFALAYCPTRTGLLAVL 262 (783)
T ss_pred hcccceecCCCCCceeccc-cCceeeccchhhhc---c----------HHHHHhhCCCCcccceeeEEeccCCcchhhhh
Confidence 455566777 566666654 899999994 3222 0 112222221 35788999986443 3333
Q ss_pred -cCCCcEEEEeCC
Q psy11100 89 -DETGLIIVWMLY 100 (110)
Q Consensus 89 -~~~~~i~~w~~~ 100 (110)
-..++|+.+++.
T Consensus 263 ~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 263 SRDSITIRLYDIC 275 (783)
T ss_pred ccCcceEEEeccc
Confidence 346788888865
No 396
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=66.50 E-value=8.5 Score=15.49 Aligned_cols=23 Identities=4% Similarity=0.027 Sum_probs=13.8
Q ss_pred EEEEEcCCCCeEEEecCCCcEEE
Q psy11100 74 RAIIWNEQYEKLTSSDETGLIIV 96 (110)
Q Consensus 74 ~~~~~s~~~~~l~s~~~~~~i~~ 96 (110)
..++.+++|..+++=.....|++
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~v 27 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQV 27 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEEE
Confidence 45666676666655555555554
No 397
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=65.09 E-value=34 Score=21.90 Aligned_cols=75 Identities=12% Similarity=0.150 Sum_probs=42.6
Q ss_pred ceEEEEEecCCCEEEEEe---cCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec-CC
Q psy11100 16 KVNCLAWHQNQGWIAVGG---DDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD-ET 91 (110)
Q Consensus 16 ~v~~~~~~p~~~~l~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~-~~ 91 (110)
.|..+.++|||..++... .++.|.+-.+..... +.+..... ...........+..+.|.+++.+++.+. .+
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~--g~~~~l~~---~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGD--GVPRRLTG---PRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCC--CCcceecc---ceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence 899999999999876554 246677655543221 10000000 1111222346788999999999855544 34
Q ss_pred CcEE
Q psy11100 92 GLII 95 (110)
Q Consensus 92 ~~i~ 95 (110)
..+.
T Consensus 188 ~~~~ 191 (253)
T PF10647_consen 188 GPVV 191 (253)
T ss_pred Ccee
Confidence 4333
No 398
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=63.52 E-value=37 Score=21.86 Aligned_cols=72 Identities=18% Similarity=0.289 Sum_probs=43.5
Q ss_pred CCceEEEEEecCCC-EEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeecc-CCCeEEEEEcCCCCeEEEecCC
Q psy11100 14 NTKVNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH-SGKVRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 14 ~~~v~~~~~~p~~~-~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~s~~~~ 91 (110)
...++.++|.|+.. +.+.....+.+...+.. +. .+..+.-. .+-.-.+++..++.++++...+
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~--------------vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~ 85 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GK--------------VLRRIPLDGFGDYEGITYLGNGRYVLSEERD 85 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT-----------------EEEEEE-SS-SSEEEEEE-STTEEEEEETTT
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CC--------------EEEEEeCCCCCCceeEEEECCCEEEEEEcCC
Confidence 34599999999855 56666777777777764 33 23333322 2335567776777777766677
Q ss_pred CcEEEEeCC
Q psy11100 92 GLIIVWMLY 100 (110)
Q Consensus 92 ~~i~~w~~~ 100 (110)
+.+.++++.
T Consensus 86 ~~L~~~~~~ 94 (248)
T PF06977_consen 86 QRLYIFTID 94 (248)
T ss_dssp TEEEEEEE-
T ss_pred CcEEEEEEe
Confidence 888777763
No 399
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=63.32 E-value=40 Score=22.15 Aligned_cols=69 Identities=13% Similarity=-0.007 Sum_probs=37.3
Q ss_pred CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeecc--CCCeEEEEEcCCCCeEEEecC
Q psy11100 13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH--SGKVRAIIWNEQYEKLTSSDE 90 (110)
Q Consensus 13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~s~~~ 90 (110)
..++|.+++-- ++. ++.+. ++.+.+|++.... .+.....+ .-.+.++.. .+..++.++.
T Consensus 87 ~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~--------------~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~ 147 (321)
T PF03178_consen 87 VKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK--------------TLLKKAFYDSPFYITSLSV--FKNYILVGDA 147 (321)
T ss_dssp ESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS--------------SEEEEEEE-BSSSEEEEEE--ETTEEEEEES
T ss_pred ecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc--------------cchhhheecceEEEEEEec--cccEEEEEEc
Confidence 45778887655 444 43333 4789999888654 11111111 123444433 3557777776
Q ss_pred CCcEEEEeCC
Q psy11100 91 TGLIIVWMLY 100 (110)
Q Consensus 91 ~~~i~~w~~~ 100 (110)
...+.++.+.
T Consensus 148 ~~sv~~~~~~ 157 (321)
T PF03178_consen 148 MKSVSLLRYD 157 (321)
T ss_dssp SSSEEEEEEE
T ss_pred ccCEEEEEEE
Confidence 6666666544
No 400
>KOG2444|consensus
Probab=60.92 E-value=33 Score=22.01 Aligned_cols=27 Identities=7% Similarity=-0.116 Sum_probs=18.5
Q ss_pred CCCeEEEecCCCcEEEEeCCCCCChhh
Q psy11100 81 QYEKLTSSDETGLIIVWMLYKCNDDDE 107 (110)
Q Consensus 81 ~~~~l~s~~~~~~i~~w~~~~~~~~~~ 107 (110)
.+..++..+.+..|.+|+...++.+..
T Consensus 147 ~~e~~ivv~sd~~i~~a~~S~d~~~k~ 173 (238)
T KOG2444|consen 147 SGEELIVVGSDEFLKIADTSHDRVLKK 173 (238)
T ss_pred CcceeEEecCCceEEeeccccchhhhh
Confidence 355566777788888888777665443
No 401
>KOG2247|consensus
Probab=60.65 E-value=0.84 Score=32.17 Aligned_cols=78 Identities=13% Similarity=0.173 Sum_probs=51.2
Q ss_pred ccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCe-EEE
Q psy11100 9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK-LTS 87 (110)
Q Consensus 9 ~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~s 87 (110)
+...+-.......|-|++.-++.++.+..+..||-.... ..-....+....++|..++.. ++.
T Consensus 29 ledaalv~pi~~~w~~e~~nlavaca~tiv~~YD~agq~----------------~le~n~tg~aldm~wDkegdvlavl 92 (615)
T KOG2247|consen 29 LEDAALVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQV----------------ILELNPTGKALDMAWDKEGDVLAVL 92 (615)
T ss_pred hhhhhccccceeeEecCCCceehhhhhhHHHhhhhhcce----------------ecccCCchhHhhhhhccccchhhhh
Confidence 333454555567788887668888877778888766543 111223445557888777776 445
Q ss_pred ecCCCcEEEEeCCCC
Q psy11100 88 SDETGLIIVWMLYKC 102 (110)
Q Consensus 88 ~~~~~~i~~w~~~~~ 102 (110)
+...+.+.+|++.+.
T Consensus 93 Aek~~piylwd~n~e 107 (615)
T KOG2247|consen 93 AEKTGPIYLWDVNSE 107 (615)
T ss_pred hhcCCCeeechhhhh
Confidence 566789999998754
No 402
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=60.38 E-value=52 Score=22.47 Aligned_cols=74 Identities=11% Similarity=0.084 Sum_probs=46.6
Q ss_pred ceEEEEEecCCCEEEEEec---CCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe-cCC
Q psy11100 16 KVNCLAWHQNQGWIAVGGD---DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS-DET 91 (110)
Q Consensus 16 ~v~~~~~~p~~~~l~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~-~~~ 91 (110)
....++++|++..+..+.. ++.+.+.|..+.. .......-... ..++++|+|..+.-. ..+
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~--------------~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~ 181 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK--------------VTATIPVGNTP-TGVAVDPDGNKVYVTNSDD 181 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe--------------EEEEEecCCCc-ceEEECCCCCeEEEEecCC
Confidence 4456788888877665554 4566666666554 22322211122 789999999974444 478
Q ss_pred CcEEEEeCCCCCC
Q psy11100 92 GLIIVWMLYKCND 104 (110)
Q Consensus 92 ~~i~~w~~~~~~~ 104 (110)
+.|.+.|......
T Consensus 182 ~~v~vi~~~~~~v 194 (381)
T COG3391 182 NTVSVIDTSGNSV 194 (381)
T ss_pred CeEEEEeCCCcce
Confidence 8898988665443
No 403
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=60.35 E-value=73 Score=24.16 Aligned_cols=86 Identities=10% Similarity=0.149 Sum_probs=49.4
Q ss_pred CceEEEEEecC-CCEEEEEecCCcEEEEEcCCCCCcCC-cccccccceeeeEEe--e-ccCCCeEEEEEcCCCCeEEEec
Q psy11100 15 TKVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTG-QVAAANVNLAMNQSL--Q-GHSGKVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 15 ~~v~~~~~~p~-~~~l~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~-~~~~~v~~~~~s~~~~~l~s~~ 89 (110)
.+..+++|+|. ..-+|.....|...+|++.......+ ....... ....+ . ...+....+.|.++...++-++
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~---~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~ 222 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRN---ISGSIIFDPEELSNWKRILWVSDSNRLLVCN 222 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccC---CCccccCCCcccCcceeeEecCCCCEEEEEc
Confidence 36778999995 45688889999999999932221100 0000000 00111 0 1124455788988766666555
Q ss_pred CCCcEEEEeCCCCCC
Q psy11100 90 ETGLIIVWMLYKCND 104 (110)
Q Consensus 90 ~~~~i~~w~~~~~~~ 104 (110)
...+.++|+.++..
T Consensus 223 -r~~l~~~d~~~~~~ 236 (765)
T PF10214_consen 223 -RSKLMLIDFESNWQ 236 (765)
T ss_pred -CCceEEEECCCCCc
Confidence 44667778876654
No 404
>KOG1916|consensus
Probab=60.29 E-value=21 Score=27.78 Aligned_cols=24 Identities=13% Similarity=0.066 Sum_probs=21.1
Q ss_pred EecCCCEEEEEecCCcEEEEEcCC
Q psy11100 22 WHQNQGWIAVGGDDGLLKVLKLDT 45 (110)
Q Consensus 22 ~~p~~~~l~~~~~~~~v~~~~~~~ 45 (110)
.+|||..++..+.||.++.|.+.-
T Consensus 243 lSpDGtv~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 243 LSPDGTVFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred eCCCCcEEEEeecCCccceeeeee
Confidence 699999999999999999887763
No 405
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=58.56 E-value=27 Score=18.57 Aligned_cols=31 Identities=16% Similarity=0.029 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCe-EEEecCCCcEEEEeCCC
Q psy11100 71 GKVRAIIWNEQYEK-LTSSDETGLIIVWMLYK 101 (110)
Q Consensus 71 ~~v~~~~~s~~~~~-l~s~~~~~~i~~w~~~~ 101 (110)
...+.+..+|+++. .++......|.+++.++
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 34568899999888 44555678899988764
No 406
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=57.57 E-value=49 Score=21.33 Aligned_cols=90 Identities=9% Similarity=0.152 Sum_probs=44.2
Q ss_pred eeccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccc-cceeeeEEeeccCCCeEEEEEcCCCCeE
Q psy11100 7 KKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAAN-VNLAMNQSLQGHSGKVRAIIWNEQYEKL 85 (110)
Q Consensus 7 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l 85 (110)
++++....+-...+++..++.++++.-.++.+.++++..... ...... ..+ .+.....+...+-.++|++.+..|
T Consensus 57 r~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~---~~~~~~~~~~-~l~~~~~~N~G~EGla~D~~~~~L 132 (248)
T PF06977_consen 57 RRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTT---SLDRADVQKI-SLGFPNKGNKGFEGLAYDPKTNRL 132 (248)
T ss_dssp EEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----T---T--EEEEEEE-E---S---SS--EEEEEETTTTEE
T ss_pred EEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccc---ccchhhceEE-ecccccCCCcceEEEEEcCCCCEE
Confidence 344454455667777877777777666678888888754320 110000 001 001111234567899999987776
Q ss_pred EEecCCCcEEEEeCC
Q psy11100 86 TSSDETGLIIVWMLY 100 (110)
Q Consensus 86 ~s~~~~~~i~~w~~~ 100 (110)
..+.......++.+.
T Consensus 133 ~v~kE~~P~~l~~~~ 147 (248)
T PF06977_consen 133 FVAKERKPKRLYEVN 147 (248)
T ss_dssp EEEEESSSEEEEEEE
T ss_pred EEEeCCCChhhEEEc
Confidence 666555555555543
No 407
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=56.63 E-value=54 Score=21.54 Aligned_cols=70 Identities=16% Similarity=0.154 Sum_probs=43.2
Q ss_pred ceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEee--ccCCCeEEEEEcCCCCeEEEecCCCc
Q psy11100 16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQ--GHSGKVRAIIWNEQYEKLTSSDETGL 93 (110)
Q Consensus 16 ~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~~~~ 93 (110)
.+.++. ..+++++.|.....+.++...... ..+..+. .....+.++.+-+++..++.++.+|.
T Consensus 131 ~i~sl~--~~~~~I~vgD~~~sv~~~~~~~~~-------------~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gn 195 (321)
T PF03178_consen 131 YITSLS--VFKNYILVGDAMKSVSLLRYDEEN-------------NKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGN 195 (321)
T ss_dssp SEEEEE--EETTEEEEEESSSSEEEEEEETTT-------------E-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSE
T ss_pred EEEEEe--ccccEEEEEEcccCEEEEEEEccC-------------CEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCe
Confidence 444443 346688888888888877555432 0112222 22345777777766668999999999
Q ss_pred EEEEeCC
Q psy11100 94 IIVWMLY 100 (110)
Q Consensus 94 i~~w~~~ 100 (110)
+.++...
T Consensus 196 l~~l~~~ 202 (321)
T PF03178_consen 196 LFVLRYN 202 (321)
T ss_dssp EEEEEE-
T ss_pred EEEEEEC
Confidence 9988765
No 408
>KOG1008|consensus
Probab=56.36 E-value=3.3 Score=30.31 Aligned_cols=69 Identities=14% Similarity=0.270 Sum_probs=44.0
Q ss_pred eEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcC-CCCeEEEecCCCcEE
Q psy11100 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNE-QYEKLTSSDETGLII 95 (110)
Q Consensus 17 v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~~~~i~ 95 (110)
...++|-.+.+++.+|.....+.++|++...+ ..-...+..+..+...| .+..+++-. ++.+.
T Consensus 157 qns~cwlrd~klvlaGm~sr~~~ifdlRqs~~---------------~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iA 220 (783)
T KOG1008|consen 157 QNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD---------------SVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIA 220 (783)
T ss_pred ccccccccCcchhhcccccchhhhhhhhhhhh---------------hhhhhhhhhcccceecCCCCCceeccc-cCcee
Confidence 34566666677788888888888888875431 11122334555666677 555565544 99999
Q ss_pred EEe-CCC
Q psy11100 96 VWM-LYK 101 (110)
Q Consensus 96 ~w~-~~~ 101 (110)
+|| ..+
T Consensus 221 iwD~~rn 227 (783)
T KOG1008|consen 221 IWDTYRN 227 (783)
T ss_pred eccchhh
Confidence 999 443
No 409
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=56.00 E-value=21 Score=23.55 Aligned_cols=37 Identities=14% Similarity=-0.072 Sum_probs=30.8
Q ss_pred CeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCChhhh
Q psy11100 72 KVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 72 ~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~~~ 108 (110)
-++++...++|.+|+|+-.-.+|.+.+..+|+.+..+
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~l 181 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRL 181 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEe
Confidence 3677888889999999999999999999888776544
No 410
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=51.21 E-value=29 Score=16.77 Aligned_cols=19 Identities=11% Similarity=0.106 Sum_probs=15.2
Q ss_pred ceEEEEEecCCCEEEEEec
Q psy11100 16 KVNCLAWHQNQGWIAVGGD 34 (110)
Q Consensus 16 ~v~~~~~~p~~~~l~~~~~ 34 (110)
.+.+++..|||+.++.|..
T Consensus 2 ~~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYV 20 (55)
T ss_pred ceEEEEECCCCcEEEEEEe
Confidence 4567888999999988863
No 411
>PHA02713 hypothetical protein; Provisional
Probab=50.47 E-value=64 Score=23.39 Aligned_cols=26 Identities=8% Similarity=-0.013 Sum_probs=20.3
Q ss_pred CCCeEEEecCCC--cEEEEeCCCCCChh
Q psy11100 81 QYEKLTSSDETG--LIIVWMLYKCNDDD 106 (110)
Q Consensus 81 ~~~~l~s~~~~~--~i~~w~~~~~~~~~ 106 (110)
++...+.|+.++ ++..+|+.+++|..
T Consensus 512 ~~~iyv~Gg~~~~~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 512 DNTIMMLHCYESYMLQDTFNVYTYEWNH 539 (557)
T ss_pred CCEEEEEeeecceeehhhcCcccccccc
Confidence 677777888777 78889999888753
No 412
>KOG3630|consensus
Probab=50.23 E-value=98 Score=25.05 Aligned_cols=32 Identities=9% Similarity=0.216 Sum_probs=26.0
Q ss_pred CCCceEEEEEecCCCEEEEEecCCcEEEEEcC
Q psy11100 13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLD 44 (110)
Q Consensus 13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~ 44 (110)
-+..+++++|+|.|.-++.|...|.+.-|-..
T Consensus 197 ~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 197 VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred cccceeeEEeccccceeeEecCCCeEEEeecc
Confidence 45678999999999999999999988766433
No 413
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=49.92 E-value=23 Score=15.27 Aligned_cols=21 Identities=5% Similarity=-0.077 Sum_probs=14.5
Q ss_pred CCCeEEEecCCCcEEEEeCCC
Q psy11100 81 QYEKLTSSDETGLIIVWMLYK 101 (110)
Q Consensus 81 ~~~~l~s~~~~~~i~~w~~~~ 101 (110)
.+..+..++.++.+..+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 455677777799999988764
No 414
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=48.14 E-value=82 Score=21.07 Aligned_cols=72 Identities=15% Similarity=0.214 Sum_probs=38.3
Q ss_pred CCCceEEEEEec-------CCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEe-eccCCCeEEEEEcCCCCe
Q psy11100 13 NNTKVNCLAWHQ-------NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL-QGHSGKVRAIIWNEQYEK 84 (110)
Q Consensus 13 h~~~v~~~~~~p-------~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~ 84 (110)
+...+..+.|-. .|.+++.....+.|....+.... . ......+ ......+..+++.|||.+
T Consensus 251 ~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~----~-------~~~~~~~~~~~~~r~~~v~~~pDG~L 319 (331)
T PF07995_consen 251 PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDG----S-------VTEEEEFLGGFGGRPRDVAQGPDGAL 319 (331)
T ss_dssp TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTE----E-------EEEEEEECTTSSS-EEEEEEETTSEE
T ss_pred CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCC----C-------ccceEEccccCCCCceEEEEcCCCeE
Confidence 334455555543 34455555545566666665332 0 0011122 233447889999999999
Q ss_pred EEEecCCCcEE
Q psy11100 85 LTSSDETGLII 95 (110)
Q Consensus 85 l~s~~~~~~i~ 95 (110)
.++.+.+|.|+
T Consensus 320 yv~~d~~G~iy 330 (331)
T PF07995_consen 320 YVSDDSDGKIY 330 (331)
T ss_dssp EEEE-TTTTEE
T ss_pred EEEECCCCeEe
Confidence 88887788774
No 415
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=48.11 E-value=1.2e+02 Score=23.05 Aligned_cols=86 Identities=13% Similarity=0.256 Sum_probs=47.6
Q ss_pred CCCCceEEEEEe---c--C--CCEEEEEecCCcEEEEEcCCCCC--cCCcccccccceeeeEEeecc---CCCeEEEEEc
Q psy11100 12 PNNTKVNCLAWH---Q--N--QGWIAVGGDDGLLKVLKLDTGKE--STGQVAAANVNLAMNQSLQGH---SGKVRAIIWN 79 (110)
Q Consensus 12 ~h~~~v~~~~~~---p--~--~~~l~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~s 79 (110)
...++|..++|. . + ..+|+.- ....+.|+...-... ...... ..-...++..+..+ .....+++|+
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~-s~i~~~~l~~i~~~~tgg~~~aDv~Fn 154 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRP-SRIDPNPLLTISSSDTGGFPHADVAFN 154 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCc-cccccceeEEechhhcCCCccceEEec
Confidence 455788888887 2 1 2355543 345666666221110 000000 00001123344332 2356789999
Q ss_pred CCCC-eEEEecCCCcEEEEeC
Q psy11100 80 EQYE-KLTSSDETGLIIVWML 99 (110)
Q Consensus 80 ~~~~-~l~s~~~~~~i~~w~~ 99 (110)
|... .||..+..|...+|++
T Consensus 155 P~~~~q~AiVD~~G~Wsvw~i 175 (765)
T PF10214_consen 155 PWDQRQFAIVDEKGNWSVWDI 175 (765)
T ss_pred cCccceEEEEeccCcEEEEEe
Confidence 9655 4999999999999999
No 416
>KOG4499|consensus
Probab=47.68 E-value=78 Score=20.74 Aligned_cols=43 Identities=9% Similarity=0.148 Sum_probs=31.4
Q ss_pred ecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEc
Q psy11100 23 HQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWN 79 (110)
Q Consensus 23 ~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 79 (110)
..+|.+.++.-..+.|...|..+++ .+..+.-.+.++++++|-
T Consensus 220 D~eG~L~Va~~ng~~V~~~dp~tGK--------------~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 220 DTEGNLYVATFNGGTVQKVDPTTGK--------------ILLEIKLPTPQITSCCFG 262 (310)
T ss_pred ccCCcEEEEEecCcEEEEECCCCCc--------------EEEEEEcCCCceEEEEec
Confidence 4456665555666778888888876 667777778899999984
No 417
>KOG2727|consensus
Probab=45.87 E-value=20 Score=27.88 Aligned_cols=30 Identities=17% Similarity=0.042 Sum_probs=23.5
Q ss_pred EEEEEecCCCEEEEEecCCcEEEEEcCCCC
Q psy11100 18 NCLAWHQNQGWIAVGGDDGLLKVLKLDTGK 47 (110)
Q Consensus 18 ~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~ 47 (110)
..++.+|+|++.+....-+.|-+.|+....
T Consensus 325 e~lslSP~gtlAAVTD~lgRVlLlDta~~i 354 (1244)
T KOG2727|consen 325 EKLSLSPSGTLAAVTDSLGRVLLLDTAALI 354 (1244)
T ss_pred ceeeeCCCccEEEEecccCcEEEEehhhhh
Confidence 357789999998888887888887876553
No 418
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=45.82 E-value=77 Score=20.12 Aligned_cols=50 Identities=14% Similarity=0.242 Sum_probs=33.4
Q ss_pred CEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEec
Q psy11100 27 GWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSD 89 (110)
Q Consensus 27 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 89 (110)
..|..+...+.|.+|++.... ...+.++..- +.|..+..+..|..+++--
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~------------~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEE------------CPLLCTFSTV-GRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCC------------CceeEEEcch-hheeEEEeccccceEEEEE
Confidence 444444556789999998332 0134445433 7788999999999988765
No 419
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=45.78 E-value=8.9 Score=15.04 Aligned_cols=8 Identities=0% Similarity=-0.056 Sum_probs=5.0
Q ss_pred EEcCCCCe
Q psy11100 77 IWNEQYEK 84 (110)
Q Consensus 77 ~~s~~~~~ 84 (110)
.|||+|++
T Consensus 7 ~FSp~Grl 14 (23)
T PF10584_consen 7 TFSPDGRL 14 (23)
T ss_dssp SBBTTSSB
T ss_pred eECCCCeE
Confidence 36777764
No 420
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=45.07 E-value=83 Score=20.30 Aligned_cols=33 Identities=3% Similarity=-0.113 Sum_probs=22.9
Q ss_pred EEEEEcCCCCeEEEecCCCcEEEEeCCCCCChhhh
Q psy11100 74 RAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 74 ~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~~~~ 108 (110)
..+...|+|++|+.+..++.| +|..++..+.++
T Consensus 173 P~~~llPdG~lFi~an~~s~i--~d~~~n~v~~~l 205 (243)
T PF07250_consen 173 PFVHLLPDGNLFIFANRGSII--YDYKTNTVVRTL 205 (243)
T ss_pred ceEEEcCCCCEEEEEcCCcEE--EeCCCCeEEeeC
Confidence 356778999999998865544 577766554443
No 421
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=44.89 E-value=1.3e+02 Score=22.90 Aligned_cols=75 Identities=11% Similarity=0.054 Sum_probs=42.7
Q ss_pred CCCEEEEEecCCcEEEEEcCCCCCc--CC--ccc--ccccceeeeEEeeccCCCeEEEEEc--CCCCeEEEecCCCcEEE
Q psy11100 25 NQGWIAVGGDDGLLKVLKLDTGKES--TG--QVA--AANVNLAMNQSLQGHSGKVRAIIWN--EQYEKLTSSDETGLIIV 96 (110)
Q Consensus 25 ~~~~l~~~~~~~~v~~~~~~~~~~~--~~--~~~--~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~s~~~~~~i~~ 96 (110)
+.+.|+.+..||.|.+|........ .. ..+ .......+.+.+.. .....+++++ ...+++|.++....|.+
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV-GASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeec-CCceeEEEEEecCcceEEEEecCCceEEE
Confidence 3456888899999999987432100 00 000 00111112233332 2456788887 66777877777788888
Q ss_pred EeCC
Q psy11100 97 WMLY 100 (110)
Q Consensus 97 w~~~ 100 (110)
|-+.
T Consensus 192 Faf~ 195 (717)
T PF08728_consen 192 FAFA 195 (717)
T ss_pred EEEe
Confidence 7544
No 422
>KOG2377|consensus
Probab=43.31 E-value=1.3e+02 Score=21.90 Aligned_cols=35 Identities=9% Similarity=0.133 Sum_probs=29.6
Q ss_pred ccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCC
Q psy11100 68 GHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKC 102 (110)
Q Consensus 68 ~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~ 102 (110)
...++|.++.||+|.+.++---.+.+|.+++....
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d 98 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPD 98 (657)
T ss_pred cCCCceeEEEeccCcceEEEEecCceEEEEecCCC
Confidence 34579999999999999998888999999987443
No 423
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=43.14 E-value=1e+02 Score=20.90 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=11.8
Q ss_pred CCeEEEecCCCcEEEEeC
Q psy11100 82 YEKLTSSDETGLIIVWML 99 (110)
Q Consensus 82 ~~~l~s~~~~~~i~~w~~ 99 (110)
+..++.++.+|.|..++.
T Consensus 376 ~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 376 DDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEEEEEeCCceEEEEeC
Confidence 345666677888877654
No 424
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=43.07 E-value=69 Score=18.76 Aligned_cols=78 Identities=9% Similarity=0.054 Sum_probs=42.8
Q ss_pred EEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEE---EEcCCCCe-EEEecCCCcEE
Q psy11100 20 LAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI---IWNEQYEK-LTSSDETGLII 95 (110)
Q Consensus 20 ~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~s~~~~~-l~s~~~~~~i~ 95 (110)
-.|......|+++...+.|.+++......... .... .+..+ .-...|.++ .|.|+... ++-.+....|.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~---~~~~---~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~t~ll 76 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTG---RQDS---DISFL-NINQEITALAAGRLKPDDGRDCLLIGTQTSLL 76 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccc---cccC---ceeEE-ECCCceEEEEEEecCCCCCcCEEEEeccceEE
Confidence 34555566788888899999987765431000 0000 11222 223445555 34433333 44445577889
Q ss_pred EEeCCCCCC
Q psy11100 96 VWMLYKCND 104 (110)
Q Consensus 96 ~w~~~~~~~ 104 (110)
.||+.++.-
T Consensus 77 aYDV~~N~d 85 (136)
T PF14781_consen 77 AYDVENNSD 85 (136)
T ss_pred EEEcccCch
Confidence 999887654
No 425
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=42.04 E-value=1e+02 Score=20.56 Aligned_cols=71 Identities=6% Similarity=0.145 Sum_probs=35.5
Q ss_pred CCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceee-eEEeeccCCCeEEEEEcCCCCeEEEecCCC
Q psy11100 14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAM-NQSLQGHSGKVRAIIWNEQYEKLTSSDETG 92 (110)
Q Consensus 14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~ 92 (110)
...|..+.|.|++.+.+.+ ..|.++.=+..... +.+.. +..+....-.+..++|.++++.++.++ .+
T Consensus 186 ~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~----------~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G 253 (302)
T PF14870_consen 186 SRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG----------ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SG 253 (302)
T ss_dssp SS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE----------EEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT
T ss_pred cceehhceecCCCCEEEEe-CCcEEEEccCCCCc----------cccccccCCcccCceeeEEEEecCCCCEEEEeC-Cc
Confidence 4679999999998765543 67778775522111 00000 000111223478899999888887666 44
Q ss_pred cEEE
Q psy11100 93 LIIV 96 (110)
Q Consensus 93 ~i~~ 96 (110)
.|.+
T Consensus 254 ~l~~ 257 (302)
T PF14870_consen 254 TLLV 257 (302)
T ss_dssp -EEE
T ss_pred cEEE
Confidence 4443
No 426
>KOG2280|consensus
Probab=40.80 E-value=1.4e+02 Score=22.97 Aligned_cols=30 Identities=23% Similarity=0.489 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCeEEEecCCCcEEEEeCC
Q psy11100 70 SGKVRAIIWNEQYEKLTSSDETGLIIVWMLY 100 (110)
Q Consensus 70 ~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~ 100 (110)
...+-.+.|+.+.. |++...+|++.++++.
T Consensus 83 ~~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~ 112 (829)
T KOG2280|consen 83 HGELIGMGWSDDEE-LICVQKDGTVHVYGLL 112 (829)
T ss_pred CCCeeeecccCCce-EEEEeccceEEEeecc
Confidence 34677899988765 5567779999999864
No 427
>KOG3616|consensus
Probab=39.55 E-value=1.3e+02 Score=23.56 Aligned_cols=33 Identities=9% Similarity=0.155 Sum_probs=27.6
Q ss_pred CceEEEEEecCCCEEEEEecCCcEEEEEcCCCC
Q psy11100 15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGK 47 (110)
Q Consensus 15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~ 47 (110)
..++++.-+|.|+-++.+..||++.+|+.....
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccc
Confidence 456677778999999999999999999887654
No 428
>PF13121 DUF3976: Domain of unknown function (DUF3976)
Probab=39.53 E-value=27 Score=15.30 Aligned_cols=13 Identities=31% Similarity=0.677 Sum_probs=8.6
Q ss_pred CceeeeeeccCCC
Q psy11100 1 MFIYLSKKIAIPN 13 (110)
Q Consensus 1 ~~~~~~~~~~~~h 13 (110)
||.|..|.+..++
T Consensus 1 ~y~fvrkdit~~n 13 (41)
T PF13121_consen 1 MYFFVRKDITKDN 13 (41)
T ss_pred CEEEEEeeccCCC
Confidence 6777777776544
No 429
>PF13964 Kelch_6: Kelch motif
Probab=39.10 E-value=42 Score=15.14 Aligned_cols=24 Identities=0% Similarity=-0.363 Sum_probs=15.4
Q ss_pred CCCeEEEecCC------CcEEEEeCCCCCC
Q psy11100 81 QYEKLTSSDET------GLIIVWMLYKCND 104 (110)
Q Consensus 81 ~~~~l~s~~~~------~~i~~w~~~~~~~ 104 (110)
++.+.+.|+.+ ..+.++|+.++++
T Consensus 11 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W 40 (50)
T PF13964_consen 11 GGKIYVFGGYDNSGKYSNDVERYDPETNTW 40 (50)
T ss_pred CCEEEEECCCCCCCCccccEEEEcCCCCcE
Confidence 45555555543 3578888888776
No 430
>KOG3616|consensus
Probab=38.84 E-value=72 Score=24.73 Aligned_cols=33 Identities=15% Similarity=0.123 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCC
Q psy11100 71 GKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCN 103 (110)
Q Consensus 71 ~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~ 103 (110)
..+..++-+|.++.++++..|++|+++++...+
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~ 47 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRR 47 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccc
Confidence 345667778999999999999999999876543
No 431
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=38.59 E-value=1.8e+02 Score=22.24 Aligned_cols=74 Identities=16% Similarity=0.216 Sum_probs=44.8
Q ss_pred CceEEEEEe--cCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCC-----CC-eEE
Q psy11100 15 TKVNCLAWH--QNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQ-----YE-KLT 86 (110)
Q Consensus 15 ~~v~~~~~~--p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~-~l~ 86 (110)
..+..++++ ...+++|.++....|-+|-...... ... ...-..+..-|.++.|-++ |. .++
T Consensus 164 ~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~--r~~---------~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~ 232 (717)
T PF08728_consen 164 ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDE--RFY---------HVPSHQHSHNIPNVSFLDDDLDPNGHVKVV 232 (717)
T ss_pred CceeEEEEEecCcceEEEEecCCceEEEEEEecccc--ccc---------cccccccccCCCeeEeecCCCCCccceEEE
Confidence 355667777 6778888888888777765543210 000 0000114455777777553 32 577
Q ss_pred EecCCCcEEEEeC
Q psy11100 87 SSDETGLIIVWML 99 (110)
Q Consensus 87 s~~~~~~i~~w~~ 99 (110)
+++-.|.+.+|++
T Consensus 233 a~dI~G~v~~~~I 245 (717)
T PF08728_consen 233 ATDISGEVWTFKI 245 (717)
T ss_pred EEeccCcEEEEEE
Confidence 8888999888776
No 432
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=38.48 E-value=1.2e+02 Score=20.16 Aligned_cols=32 Identities=13% Similarity=0.281 Sum_probs=23.1
Q ss_pred ceEEEEEecCCCEEEEEecCCcEEEEEcCCCC
Q psy11100 16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGK 47 (110)
Q Consensus 16 ~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~ 47 (110)
.+.++...++|.+|++...-..|.+.+-.++.
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~ 176 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGK 176 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCc
Confidence 46666777788999888877777776655554
No 433
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=37.99 E-value=1.3e+02 Score=20.42 Aligned_cols=19 Identities=0% Similarity=-0.132 Sum_probs=13.8
Q ss_pred eEEEEEcCCCCeEEEecCC
Q psy11100 73 VRAIIWNEQYEKLTSSDET 91 (110)
Q Consensus 73 v~~~~~s~~~~~l~s~~~~ 91 (110)
...++|+++|.++++-..+
T Consensus 186 p~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 186 PYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred CccceECCCCCEEEEccCC
Confidence 4578999999887664433
No 434
>PRK13684 Ycf48-like protein; Provisional
Probab=37.18 E-value=1.3e+02 Score=20.21 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=14.5
Q ss_pred CCceEEEEEecCCCEEEEEec
Q psy11100 14 NTKVNCLAWHQNQGWIAVGGD 34 (110)
Q Consensus 14 ~~~v~~~~~~p~~~~l~~~~~ 34 (110)
.+.+..+.+.|++.+++.+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~ 192 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSR 192 (334)
T ss_pred cceEEEEEECCCCeEEEEeCC
Confidence 356777888888776666543
No 435
>PRK14751 tetracycline resistance determinant leader peptide; Provisional
Probab=37.05 E-value=27 Score=14.00 Aligned_cols=10 Identities=20% Similarity=0.385 Sum_probs=7.1
Q ss_pred CCCcEEEEeC
Q psy11100 90 ETGLIIVWML 99 (110)
Q Consensus 90 ~~~~i~~w~~ 99 (110)
.|.+|.-||+
T Consensus 13 sdksi~hwdf 22 (28)
T PRK14751 13 SDKSIYHWDF 22 (28)
T ss_pred CcCceeeeee
Confidence 3667888875
No 436
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.60 E-value=1.3e+02 Score=20.24 Aligned_cols=89 Identities=11% Similarity=0.207 Sum_probs=49.0
Q ss_pred eccCCCCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEE
Q psy11100 8 KIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS 87 (110)
Q Consensus 8 ~~~~~h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 87 (110)
+++...-.....+.+.-+|++.++--.++.+.++.+.... .........+ .+..........-.++|.|.++.|.-
T Consensus 122 tiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t---~~~~~~~~~i-~L~~~~k~N~GfEGlA~d~~~~~l~~ 197 (316)
T COG3204 122 TIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT---TVISAKVQKI-PLGTTNKKNKGFEGLAWDPVDHRLFV 197 (316)
T ss_pred EecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc---cEEeccceEE-eccccCCCCcCceeeecCCCCceEEE
Confidence 3444333444456677777777777777778777766542 0110110011 11122222445678999998888776
Q ss_pred ecCCCcEEEEeCC
Q psy11100 88 SDETGLIIVWMLY 100 (110)
Q Consensus 88 ~~~~~~i~~w~~~ 100 (110)
+-...-+.++.+.
T Consensus 198 aKEr~P~~I~~~~ 210 (316)
T COG3204 198 AKERNPIGIFEVT 210 (316)
T ss_pred EEccCCcEEEEEe
Confidence 6666666665544
No 437
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=36.37 E-value=1.9e+02 Score=22.04 Aligned_cols=82 Identities=15% Similarity=0.061 Sum_probs=49.9
Q ss_pred CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCc----cc--ccccceeeeEEeeccCCCeEEEEEcCCCCeEE
Q psy11100 13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQ----VA--AANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT 86 (110)
Q Consensus 13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 86 (110)
....|.++....-+..++..-.||+|.++|-.+....... .+ ....-.+.-+.+.. -.....++|||.+..++
T Consensus 258 ~~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~-~~~~~~vafSPt~c~~v 336 (753)
T PF11635_consen 258 LNKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPC-IQPPLHVAFSPTMCSLV 336 (753)
T ss_pred cCCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCcccccccccccccccc-CCCCceEEECcccceEE
Confidence 3466777776666778888899999999988765321111 00 00000001112211 12455789999999988
Q ss_pred EecCCCcEE
Q psy11100 87 SSDETGLII 95 (110)
Q Consensus 87 s~~~~~~i~ 95 (110)
..+.++.+.
T Consensus 337 ~~~~~~~~~ 345 (753)
T PF11635_consen 337 QIDEDGKTK 345 (753)
T ss_pred EEecCCCce
Confidence 888888844
No 438
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=36.22 E-value=1.3e+02 Score=19.84 Aligned_cols=41 Identities=10% Similarity=0.009 Sum_probs=23.2
Q ss_pred eeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeCCCCCCh
Q psy11100 62 MNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDD 105 (110)
Q Consensus 62 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~~~~ 105 (110)
...++... .+-..++ .++..|+.++.+..|.++|+.+-+..
T Consensus 122 ~~~~~~y~-~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~ 162 (264)
T PF05096_consen 122 KIGTFPYP-GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEV 162 (264)
T ss_dssp EEEEEE-S-SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEE
T ss_pred EEEEEecC-CcceEEE--cCCCEEEEECCccceEEECCcccceE
Confidence 34444432 3444555 47778888888889999998765443
No 439
>PF05907 DUF866: Eukaryotic protein of unknown function (DUF866); InterPro: IPR008584 This family consists of a number of hypothetical eukaryotic proteins of unknown function with an average length of around 165 residues.; PDB: 1ZSO_B.
Probab=35.31 E-value=63 Score=19.37 Aligned_cols=41 Identities=10% Similarity=-0.039 Sum_probs=19.6
Q ss_pred eeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEE-EEeCCCCCC
Q psy11100 62 MNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLII-VWMLYKCND 104 (110)
Q Consensus 62 ~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~-~w~~~~~~~ 104 (110)
.+..+..+. +--+.|+|++.+.+.+...|+.. -.|+..+.|
T Consensus 96 ~i~~fdCRG--~e~~~f~p~~~~~~~~~esG~~f~~vdL~e~eW 137 (161)
T PF05907_consen 96 PILAFDCRG--LEPVEFSPRGGWVAVSVESGTKFEDVDLSEGEW 137 (161)
T ss_dssp EEEEEEEES--EEEEEE---S-EEEEET-TS-EEEEE--TTS-E
T ss_pred eEEEEECCC--cEeEEEecCCcEEEEEecCCCEEEeccCCCCce
Confidence 344444333 34578999999988887566554 667776654
No 440
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=35.31 E-value=39 Score=13.75 Aligned_cols=24 Identities=25% Similarity=0.671 Sum_probs=16.0
Q ss_pred ceEEEEEecCCCEEEEEecCCcEEEE
Q psy11100 16 KVNCLAWHQNQGWIAVGGDDGLLKVL 41 (110)
Q Consensus 16 ~v~~~~~~p~~~~l~~~~~~~~v~~~ 41 (110)
.|.+++.. ..+++.+...+.+|+|
T Consensus 3 ~i~aia~g--~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 3 EIEAIAAG--DSWVAVATSAGYLRIF 26 (27)
T ss_pred eEEEEEcc--CCEEEEEeCCCeEEec
Confidence 45666654 3467777777888886
No 441
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=35.18 E-value=76 Score=16.97 Aligned_cols=22 Identities=0% Similarity=-0.215 Sum_probs=14.0
Q ss_pred CCeEEEEEcCCCCeEE-EecCCC
Q psy11100 71 GKVRAIIWNEQYEKLT-SSDETG 92 (110)
Q Consensus 71 ~~v~~~~~s~~~~~l~-s~~~~~ 92 (110)
...+.+++++++..++ +-....
T Consensus 57 ~fpNGVals~d~~~vlv~Et~~~ 79 (89)
T PF03088_consen 57 YFPNGVALSPDESFVLVAETGRY 79 (89)
T ss_dssp SSEEEEEE-TTSSEEEEEEGGGT
T ss_pred CccCeEEEcCCCCEEEEEeccCc
Confidence 4567899999999744 444333
No 442
>PRK10526 acyl-CoA thioesterase II; Provisional
Probab=34.95 E-value=1.2e+02 Score=19.92 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=15.8
Q ss_pred CceEEEEEecCCCEEEEEecCCcEEE
Q psy11100 15 TKVNCLAWHQNQGWIAVGGDDGLLKV 40 (110)
Q Consensus 15 ~~v~~~~~~p~~~~l~~~~~~~~v~~ 40 (110)
+-...--|+.+|.++++....+-++.
T Consensus 259 ~~~~g~i~~~~G~LvAs~~Qegl~r~ 284 (286)
T PRK10526 259 GFVRGEFYTQDGVLVASTVQEGVMRN 284 (286)
T ss_pred eEEEEEEECCCCCEEEEEEeeEEEEe
Confidence 33444556677777777766665553
No 443
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=34.93 E-value=91 Score=23.18 Aligned_cols=33 Identities=9% Similarity=0.216 Sum_probs=23.0
Q ss_pred CCCCceEEEEEecCCCEEEEEe-cCCcEEEEEcC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGG-DDGLLKVLKLD 44 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~-~~~~v~~~~~~ 44 (110)
...+.|.|-+|.+||+.|+.+- ..-.-++||-.
T Consensus 153 ~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 153 KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 5568899999999998765543 23345677754
No 444
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=34.18 E-value=1.7e+02 Score=20.86 Aligned_cols=60 Identities=13% Similarity=0.138 Sum_probs=32.7
Q ss_pred CCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCC-CeEEEecCCCcE
Q psy11100 26 QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQY-EKLTSSDETGLI 94 (110)
Q Consensus 26 ~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~~~~i 94 (110)
|.+|+.+-..+.|....+........ -.....+.. .+.++.++..||| .+.+..+..|.+
T Consensus 369 g~llv~~L~~~~l~r~~l~~~~~~v~--------~~~~~~~~~-~~RiRdv~~~pDg~~iy~~td~~g~~ 429 (454)
T TIGR03606 369 NSLLIPSLKRGVIYRIKLDPDYSTVY--------GDAVPMFKT-NNRYRDVIASPDGNVLYVATDNFGNV 429 (454)
T ss_pred CCEEEEEcCCCeEEEEEecCCcceec--------ceeEEeecC-CCeeEEEEECCCCCEEEEEEcCCCcc
Confidence 55666666666666656643310000 001222333 5789999999997 665555545443
No 445
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=32.98 E-value=41 Score=19.11 Aligned_cols=22 Identities=9% Similarity=0.425 Sum_probs=15.2
Q ss_pred EEEEEecCCCEEEEEecCCcEE
Q psy11100 18 NCLAWHQNQGWIAVGGDDGLLK 39 (110)
Q Consensus 18 ~~~~~~p~~~~l~~~~~~~~v~ 39 (110)
..-.|||||+++...-.|..+.
T Consensus 71 HvHvfSpDG~~lSFTYNDhVmh 92 (122)
T PF12566_consen 71 HVHVFSPDGSWLSFTYNDHVMH 92 (122)
T ss_pred cceEECCCCCEEEEEecchhhc
Confidence 3456888888887776665544
No 446
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=32.29 E-value=1.8e+02 Score=21.13 Aligned_cols=28 Identities=4% Similarity=-0.095 Sum_probs=21.5
Q ss_pred CCCeEEEecCCCcEEEEeCCCCCChhhh
Q psy11100 81 QYEKLTSSDETGLIIVWMLYKCNDDDEW 108 (110)
Q Consensus 81 ~~~~l~s~~~~~~i~~w~~~~~~~~~~~ 108 (110)
.+..+..++.+|.++.+|.++|+.+.+.
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~ 498 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKF 498 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEE
Confidence 3445556777999999999999877654
No 447
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=32.29 E-value=2.2e+02 Score=21.54 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCEEEEEec-----CCcEEEEEcCCCC
Q psy11100 16 KVNCLAWHQNQGWIAVGGD-----DGLLKVLKLDTGK 47 (110)
Q Consensus 16 ~v~~~~~~p~~~~l~~~~~-----~~~v~~~~~~~~~ 47 (110)
.+..+..+||.++++-+-. ...+++.|+.++.
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~ 166 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGE 166 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEeccccc
Confidence 4666788999888765432 2367888887765
No 448
>KOG1983|consensus
Probab=31.77 E-value=1.7e+02 Score=23.32 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=23.4
Q ss_pred cCCCCeEEEecCCCcEEEEeCCCCCC
Q psy11100 79 NEQYEKLTSSDETGLIIVWMLYKCND 104 (110)
Q Consensus 79 s~~~~~l~s~~~~~~i~~w~~~~~~~ 104 (110)
++++..++++-.||.+.+||...+..
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 77899999999999999999998855
No 449
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=30.90 E-value=74 Score=16.78 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=21.3
Q ss_pred CCceEEEEEecCCCEEEEEecCCcEEE
Q psy11100 14 NTKVNCLAWHQNQGWIAVGGDDGLLKV 40 (110)
Q Consensus 14 ~~~v~~~~~~p~~~~l~~~~~~~~v~~ 40 (110)
...|.++.|+|-...|+.|...|.-.+
T Consensus 9 ~~~v~~~~F~PfEDvLgvGh~~G~sSi 35 (80)
T PF08149_consen 9 GSPVESLRFCPFEDVLGVGHSKGFSSI 35 (80)
T ss_pred CCeeeeeEEechHHeeEeeccCceeEE
Confidence 467999999998888888887774443
No 450
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=30.77 E-value=1.3e+02 Score=20.81 Aligned_cols=31 Identities=19% Similarity=0.226 Sum_probs=24.9
Q ss_pred CceEEEEEecCCCEEEEEecCCcEEEEEcCC
Q psy11100 15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45 (110)
Q Consensus 15 ~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~ 45 (110)
..+..++..+..+.+.+...++.+.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488999999888999999999999999985
No 451
>KOG2109|consensus
Probab=28.81 E-value=71 Score=24.03 Aligned_cols=34 Identities=12% Similarity=0.350 Sum_probs=26.6
Q ss_pred CCCCceEEEEEecCCCEEEEEecCC-cEEEEEcCC
Q psy11100 12 PNNTKVNCLAWHQNQGWIAVGGDDG-LLKVLKLDT 45 (110)
Q Consensus 12 ~h~~~v~~~~~~p~~~~l~~~~~~~-~v~~~~~~~ 45 (110)
.|+.++..++|.+.+..+++++..| .|.++++..
T Consensus 313 AhkspiSaLcfdqsgsllViasi~g~nVnvfRime 347 (788)
T KOG2109|consen 313 AHKSPISALCFDQSGSLLVIASITGRNVNVFRIME 347 (788)
T ss_pred eecCcccccccccCceEEEEEeeccceeeeEEecc
Confidence 6899999999999999887776544 576666653
No 452
>cd03444 Thioesterase_II_repeat1 Thioesterase II (TEII) is thought to regenerate misprimed nonribosomal peptide synthetases (NRPSs) as well as modular polyketide synthases (PKSs) by hydrolyzing acetyl groups bound to the peptidyl carrier protein (PCP) and acyl carrier protein (ACP) domains, respectively. TEII has two tandem asymmetric hot dog folds that are structurally similar to one found in PaaI thioesterase, 4-hydroxybenzoyl-CoA thioesterase (4HBT) and beta-hydroxydecanoyl-ACP dehydratase and thus, the TEII monomer is equivalent to the homodimeric form of the latter three enzymes. Human TEII is expressed in T cells and has been shown to bind the product of the HIV-1 Nef gene.
Probab=28.74 E-value=1.1e+02 Score=16.62 Aligned_cols=13 Identities=8% Similarity=0.141 Sum_probs=5.5
Q ss_pred EEecCCCEEEEEe
Q psy11100 21 AWHQNQGWIAVGG 33 (110)
Q Consensus 21 ~~~p~~~~l~~~~ 33 (110)
-|+++|+.++++.
T Consensus 87 l~~~~G~LvAs~~ 99 (104)
T cd03444 87 IFTRDGELVASVA 99 (104)
T ss_pred EECCCCCEEEEEE
Confidence 3444444444433
No 453
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=28.65 E-value=1.5e+02 Score=21.22 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCeEEEecCCCcEEEEeCCCC
Q psy11100 71 GKVRAIIWNEQYEKLTSSDETGLIIVWMLYKC 102 (110)
Q Consensus 71 ~~v~~~~~s~~~~~l~s~~~~~~i~~w~~~~~ 102 (110)
.....++|.|+|.+|++--..|.|++++..++
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 44568899999988877765688888876543
No 454
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=28.63 E-value=63 Score=14.37 Aligned_cols=25 Identities=0% Similarity=-0.134 Sum_probs=12.7
Q ss_pred CCCCeEEEecCC------CcEEEEeCCCCCC
Q psy11100 80 EQYEKLTSSDET------GLIIVWMLYKCND 104 (110)
Q Consensus 80 ~~~~~l~s~~~~------~~i~~w~~~~~~~ 104 (110)
.++.+++.++.+ +.+.++|+.++++
T Consensus 11 ~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W 41 (49)
T PF13418_consen 11 GDNSIYVFGGRDSSGSPLNDLWIFDIETNTW 41 (49)
T ss_dssp -TTEEEEE--EEE-TEE---EEEEETTTTEE
T ss_pred eCCeEEEECCCCCCCcccCCEEEEECCCCEE
Confidence 344555555422 2477888888765
No 455
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=28.49 E-value=55 Score=14.30 Aligned_cols=25 Identities=8% Similarity=-0.085 Sum_probs=14.4
Q ss_pred CCCeEEEecCCC------cEEEEeCCCCCCh
Q psy11100 81 QYEKLTSSDETG------LIIVWMLYKCNDD 105 (110)
Q Consensus 81 ~~~~l~s~~~~~------~i~~w~~~~~~~~ 105 (110)
++.+.+.|+.++ .+..||+.++++.
T Consensus 11 ~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~ 41 (47)
T PF01344_consen 11 GNKIYVIGGYDGNNQPTNSVEVYDPETNTWE 41 (47)
T ss_dssp TTEEEEEEEBESTSSBEEEEEEEETTTTEEE
T ss_pred CCEEEEEeeecccCceeeeEEEEeCCCCEEE
Confidence 444444444333 4777888877653
No 456
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=27.86 E-value=2.9e+02 Score=21.48 Aligned_cols=58 Identities=10% Similarity=0.060 Sum_probs=34.5
Q ss_pred EEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEee--ccCCCeEEEEEcCCCCeEEEecCCCcEEEEeC
Q psy11100 30 AVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQ--GHSGKVRAIIWNEQYEKLTSSDETGLIIVWML 99 (110)
Q Consensus 30 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~ 99 (110)
..|-.++.+..||.+-.. .+. .....+ ......+|++=+.+|. ++.|+.+|.|++||-
T Consensus 546 flGls~n~lfriDpR~~~--~k~---------v~~~~k~Y~~~~~Fs~~aTt~~G~-iavgs~~G~IRLyd~ 605 (794)
T PF08553_consen 546 FLGLSDNSLFRIDPRLSG--NKL---------VDSQSKQYSSKNNFSCFATTEDGY-IAVGSNKGDIRLYDR 605 (794)
T ss_pred EEEECCCceEEeccCCCC--Cce---------eeccccccccCCCceEEEecCCce-EEEEeCCCcEEeecc
Confidence 455566778888877432 000 000111 1234566777666654 778888999999983
No 457
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=27.69 E-value=1.7e+02 Score=20.98 Aligned_cols=32 Identities=9% Similarity=-0.068 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCCe-EEEecCCCcEEEEeCCCC
Q psy11100 71 GKVRAIIWNEQYEK-LTSSDETGLIIVWMLYKC 102 (110)
Q Consensus 71 ~~v~~~~~s~~~~~-l~s~~~~~~i~~w~~~~~ 102 (110)
..+..+..|.|+++ .+++..+|.++.||+..-
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 45788999999998 567789999999998753
No 458
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=26.37 E-value=2.4e+02 Score=20.05 Aligned_cols=24 Identities=8% Similarity=-0.116 Sum_probs=17.5
Q ss_pred CeEEEecCCCcEEEEeCCCCCChh
Q psy11100 83 EKLTSSDETGLIIVWMLYKCNDDD 106 (110)
Q Consensus 83 ~~l~s~~~~~~i~~w~~~~~~~~~ 106 (110)
..++.++.++.|..+|.++|+.+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W 134 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVW 134 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEee
Confidence 455566678888888888887654
No 459
>PHA03092 semaphorin-like protein; Provisional
Probab=25.04 E-value=1.4e+02 Score=16.89 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=24.0
Q ss_pred CCCceEEEEEecCCCEEEEEecCCcEEEEEcCCCC
Q psy11100 13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGK 47 (110)
Q Consensus 13 h~~~v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~ 47 (110)
.+..++.--=-.|...|++|...|.-+.|.++...
T Consensus 59 n~nyittsikved~dtlvcgtnngnpkcwkidgsd 93 (134)
T PHA03092 59 NTNYITTSIKVEDKDTLVCGTNNGNPKCWKIDGSD 93 (134)
T ss_pred ccceEEEEEEEccCceEEEecCCCCcceEEEcCcc
Confidence 44555443223456778999999999999988654
No 460
>TIGR00189 tesB acyl-CoA thioesterase II. Subunit: homotetramer.
Probab=24.91 E-value=1.9e+02 Score=18.56 Aligned_cols=12 Identities=17% Similarity=0.086 Sum_probs=4.6
Q ss_pred EecCCCEEEEEe
Q psy11100 22 WHQNQGWIAVGG 33 (110)
Q Consensus 22 ~~p~~~~l~~~~ 33 (110)
|+.+|.++++..
T Consensus 254 ~d~~G~lvAs~~ 265 (271)
T TIGR00189 254 FTRDGVLIASTV 265 (271)
T ss_pred ECCCCCEEEEEE
Confidence 333344443333
No 461
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=24.52 E-value=2.1e+02 Score=18.75 Aligned_cols=41 Identities=17% Similarity=0.353 Sum_probs=28.8
Q ss_pred eeccCCCCCceEEEEEec------C-CCEEEEEecCCcEEEEEcCCCC
Q psy11100 7 KKIAIPNNTKVNCLAWHQ------N-QGWIAVGGDDGLLKVLKLDTGK 47 (110)
Q Consensus 7 ~~~~~~h~~~v~~~~~~p------~-~~~l~~~~~~~~v~~~~~~~~~ 47 (110)
+..++...+.|+|++--+ + -.+++.|..+|.+.+.|...-.
T Consensus 169 k~~pl~~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~ 216 (257)
T PF14779_consen 169 KDSPLKRQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFT 216 (257)
T ss_pred hcCCcccCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhhe
Confidence 445566777888876632 1 2468899999999998877543
No 462
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=23.60 E-value=1.6e+02 Score=17.10 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=15.3
Q ss_pred CeEEEEEcCCCCe-EEEecCCCcEEEEeCCCC
Q psy11100 72 KVRAIIWNEQYEK-LTSSDETGLIIVWMLYKC 102 (110)
Q Consensus 72 ~v~~~~~s~~~~~-l~s~~~~~~i~~w~~~~~ 102 (110)
.+...-|.++... ++.+-+|++|+++++..+
T Consensus 12 g~L~P~yD~dt~llyl~gKGD~~ir~yEv~~~ 43 (136)
T PF08954_consen 12 GVLMPFYDEDTNLLYLAGKGDGNIRYYEVSDE 43 (136)
T ss_dssp S-EEEEE-TTT-EEEEEETT-S-EEEEEE-SS
T ss_pred ceeEeeEcCCCCEEEEEeccCcEEEEEEEcCC
Confidence 3444555666555 445556777888877654
No 463
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=23.41 E-value=2.7e+02 Score=19.50 Aligned_cols=19 Identities=5% Similarity=0.195 Sum_probs=12.6
Q ss_pred CCCeEEEEEcCCCCeEEEe
Q psy11100 70 SGKVRAIIWNEQYEKLTSS 88 (110)
Q Consensus 70 ~~~v~~~~~s~~~~~l~s~ 88 (110)
...+..+.|.+++..++.+
T Consensus 280 ~~~l~~v~~~~dg~l~l~g 298 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT 298 (398)
T ss_pred ccceeeeeEcCCCCEEEEe
Confidence 3456777777777776544
No 464
>PF13983 YsaB: YsaB-like lipoprotein
Probab=22.89 E-value=73 Score=16.28 Aligned_cols=14 Identities=0% Similarity=0.069 Sum_probs=9.5
Q ss_pred eEEEEEecCCCEEE
Q psy11100 17 VNCLAWHQNQGWIA 30 (110)
Q Consensus 17 v~~~~~~p~~~~l~ 30 (110)
-..++|.|||++|-
T Consensus 60 ~FvCSFD~dGqFLH 73 (77)
T PF13983_consen 60 GFVCSFDADGQFLH 73 (77)
T ss_pred ceEEeECCCCcEEE
Confidence 34467888888763
No 465
>PF10636 hemP: Hemin uptake protein hemP; InterPro: IPR019600 This entry represents bacterial proteins that are involved in the uptake of the iron source hemin []. ; PDB: 2JRA_B 2LOJ_A.
Probab=22.88 E-value=91 Score=13.88 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=13.1
Q ss_pred eccCCCCCceEEEEEecCCCEEE
Q psy11100 8 KIAIPNNTKVNCLAWHQNQGWIA 30 (110)
Q Consensus 8 ~~~~~h~~~v~~~~~~p~~~~l~ 30 (110)
++.+.|.+....+.....|.++.
T Consensus 14 ev~I~H~g~~Y~LR~Tr~gKLIL 36 (38)
T PF10636_consen 14 EVRIEHGGQIYRLRITRQGKLIL 36 (38)
T ss_dssp EEEEEETTEEEEEEEETTTEEEE
T ss_pred EEEEEeCCeEEEeeEccCCcEEE
Confidence 34445666666666665555544
No 466
>KOG2467|consensus
Probab=22.57 E-value=97 Score=21.74 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=19.2
Q ss_pred CCCCeEEEecCCCcEEEEeCCC
Q psy11100 80 EQYEKLTSSDETGLIIVWMLYK 101 (110)
Q Consensus 80 ~~~~~l~s~~~~~~i~~w~~~~ 101 (110)
..|-.+++++.|+.+.+||++.
T Consensus 339 ~~Gy~lvtgGTDnHlvLvDLr~ 360 (477)
T KOG2467|consen 339 SRGYKLVTGGTDNHLVLVDLRP 360 (477)
T ss_pred HcCceEecCCccceEEEEeccc
Confidence 3577899999999999999975
No 467
>KOG2247|consensus
Probab=22.51 E-value=86 Score=22.83 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=38.2
Q ss_pred EEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEe
Q psy11100 20 LAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSS 88 (110)
Q Consensus 20 ~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 88 (110)
..|++.+..++.+...|.+.+++-...+ .+-....|...+...+|.+.+..+...
T Consensus 123 l~wsKg~~el~ig~~~gn~viynhgtsR--------------~iiv~Gkh~RRgtq~av~lEd~vil~d 177 (615)
T KOG2247|consen 123 LAWSKGTPELVIGNNAGNIVIYNHGTSR--------------RIIVMGKHQRRGTQIAVTLEDYVILCD 177 (615)
T ss_pred HhhccCCccccccccccceEEEeccchh--------------hhhhhcccccceeEEEecccceeeecC
Confidence 6788888888888888889988777655 222233366777888888877654433
No 468
>KOG2006|consensus
Probab=22.39 E-value=2.1e+02 Score=22.81 Aligned_cols=78 Identities=13% Similarity=0.185 Sum_probs=48.3
Q ss_pred eEEEEEecCCCEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEE
Q psy11100 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIV 96 (110)
Q Consensus 17 v~~~~~~p~~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~ 96 (110)
..|....-.++.++.|..-|.+.++++.... +.... ....-..++-.+..+.|.|++..++-+...|..-+
T Consensus 151 Avc~SV~~e~~lla~G~~~g~v~~y~~~~~~---ssl~~------s~~~~~~~ti~~~~~~~~p~~~~~av~~~~g~ls~ 221 (1023)
T KOG2006|consen 151 AVCCSVNHEFQLLAYGTPVGEVLLYSIDEAN---SSLVF------SNRDDDTLTVPDNNSSWRPDQNGFAVTWEKGFLAF 221 (1023)
T ss_pred ceeeeccchhhhheecccccceeehhhhhhc---cceee------ecccCccccccccccCcCCccceeeeeecccceEE
Confidence 3444455567788999988999988887654 11100 00011112235566788888888888888888888
Q ss_pred EeCCCCC
Q psy11100 97 WMLYKCN 103 (110)
Q Consensus 97 w~~~~~~ 103 (110)
|....+.
T Consensus 222 wS~~g~~ 228 (1023)
T KOG2006|consen 222 WSNQGNI 228 (1023)
T ss_pred ecccccc
Confidence 8665443
No 469
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=22.16 E-value=2.7e+02 Score=19.06 Aligned_cols=37 Identities=8% Similarity=-0.105 Sum_probs=26.6
Q ss_pred eEEEEEcC------CCCeEEEecCCCcEEEEeCCCCCChhhhh
Q psy11100 73 VRAIIWNE------QYEKLTSSDETGLIIVWMLYKCNDDDEWK 109 (110)
Q Consensus 73 v~~~~~s~------~~~~l~s~~~~~~i~~w~~~~~~~~~~~~ 109 (110)
-..++..| .+.+|+.=-.||+|..+|..+++.+.+|+
T Consensus 246 PWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 246 PWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred CceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 34566544 35556555579999999999999887765
No 470
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=21.74 E-value=63 Score=16.16 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=12.4
Q ss_pred CCeEEEecCCCcEEEEeCCCCC
Q psy11100 82 YEKLTSSDETGLIIVWMLYKCN 103 (110)
Q Consensus 82 ~~~l~s~~~~~~i~~w~~~~~~ 103 (110)
...|+..+.++.|+++.+....
T Consensus 29 ~N~Fav~~e~~~iKIfkyd~~t 50 (63)
T PF14157_consen 29 HNHFAVVDEDGQIKIFKYDEDT 50 (63)
T ss_dssp TTEEEEE-ETTEEEEEEEETTT
T ss_pred CCEEEEEecCCeEEEEEeCCCC
Confidence 3345556667777777554433
No 471
>PF12404 DUF3663: Peptidase ; InterPro: IPR008330 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family represents the peptidase B group of leucyl aminopeptidases, which are restricted to the gammaproteobacteria. They contain a C-terminal aminopeptidase catalytic domain and an N-terminal domain of unknown function. They are zinc-dependent exopeptidases (3.4.11.1 from EC) and belong to MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF). They selectively release N-terminal amino acid residues from polypeptides and proteins and are involved in the processing, catabolism and degradation of intracellular proteins [, , ]. Leucyl aminopeptidase forms a homohexamer containing two trimers stacked on top of one another []. Each monomer binds two zinc ions. The zinc-binding and catalytic sites are located within the C-terminal catalytic domain []. The same catalytic aminopeptidase domain is found in the other M17 peptidases IPR011356 from INTERPRO. These two groups of aminopeptidases differ by their N-terminal domains. The N-terminal domain in members of IPR011356 from INTERPRO has been implicated in DNA binding [, ] and it is not associated with members of this family which have a different N-terminal domain and therefore are not expected to bind DNA or be involved in transcriptional regulation. In addition, there are related proteins with the same catalytic domain and unique N-terminal sequences unrelated to any of the two N-terminal domains discussed above. For additional information please see [, , , ]. ; GO: 0004177 aminopeptidase activity, 0008235 metalloexopeptidase activity, 0030145 manganese ion binding, 0005737 cytoplasm
Probab=21.46 E-value=1e+02 Score=16.09 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=15.3
Q ss_pred CceeeeeeccCCCCCceEEEEEecCC
Q psy11100 1 MFIYLSKKIAIPNNTKVNCLAWHQNQ 26 (110)
Q Consensus 1 ~~~~~~~~~~~~h~~~v~~~~~~p~~ 26 (110)
|.+.|+...+..|=+.-..++|+.+|
T Consensus 1 M~V~LS~~~A~a~WG~~AllSf~~~g 26 (77)
T PF12404_consen 1 MQVTLSQQPAAAHWGEKALLSFNEQG 26 (77)
T ss_pred CeEEeeCCCChhHhCcCcEEEEcCCC
Confidence 66777777666665544445555444
No 472
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=21.36 E-value=3.1e+02 Score=19.44 Aligned_cols=58 Identities=9% Similarity=0.095 Sum_probs=35.5
Q ss_pred CEEEEEecCCcEEEEEcCCCCCcCCcccccccceeeeEEeeccCCCeEEEEEcCCCCeEEEecCCCcEEEEeC
Q psy11100 27 GWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWML 99 (110)
Q Consensus 27 ~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~~~~i~~w~~ 99 (110)
..+..-+.||.+.+++.+... ...+-.......-+.+.+....|++++.+..+..|.+
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~---------------f~~~lp~~llPgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFA---------------FSRFLPDFLLPGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred eEEEEEecCceEEEEeCCcEE---------------EEEEcCCCCCCcCeEEeecCCEEEEecCceeEEEecH
Confidence 457788999999999887643 1111111222234566666666777776666666653
No 473
>PF02870 Methyltransf_1N: 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain; InterPro: IPR008332 Synonym(s): 6-O-methylguanine-DNA methyltransferase, O-6-methylguanine-DNA-alkyltransferase The repair of DNA containing O6-alkylated guanine is carried out by DNA-[protein]-cysteine S-methyltransferase (2.1.1.63 from EC). The major mutagenic and carcinogenic effect of methylating agents in DNA is the formation of O6-alkylguanine. The alkyl group at the O-6 position is transferred to a cysteine residue in the enzyme []. This is a suicide reaction since the enzyme is irreversibly inactivated and the methylated protein accumulates as a dead-end product. Most, but not all of the methyltransferases are also able to repair O-4-methylthymine. DNA-[protein]-cysteine S-methyltransferases are widely distributed and are found in various prokaryotic and eukaryotic sources []. This group of proteins are characterised by having an N-terminal ribonuclease-like domain associated with 6-O-methylguanine DNA methyltransferase activity (IPR001497 from INTERPRO).; GO: 0003908 methylated-DNA-[protein]-cysteine S-methyltransferase activity, 0006281 DNA repair; PDB: 1SFE_A 1T39_B 1T38_A 1EH7_A 1EH6_A 1YFH_C 1EH8_A 1QNT_A.
Probab=21.13 E-value=97 Score=15.50 Aligned_cols=20 Identities=20% Similarity=0.099 Sum_probs=14.6
Q ss_pred cCCCCeEEEecCCCcEEEEe
Q psy11100 79 NEQYEKLTSSDETGLIIVWM 98 (110)
Q Consensus 79 s~~~~~l~s~~~~~~i~~w~ 98 (110)
+|-|..++.++..|...++-
T Consensus 9 sPlG~l~l~a~e~gL~~i~f 28 (77)
T PF02870_consen 9 SPLGPLLLAASEKGLCGIDF 28 (77)
T ss_dssp ETTEEEEEEEETTCEEEEEE
T ss_pred CCCeEEEEEEECCeEEEEEE
Confidence 78888888888787655543
No 474
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=20.68 E-value=2.7e+02 Score=18.57 Aligned_cols=32 Identities=16% Similarity=-0.135 Sum_probs=23.7
Q ss_pred EEEEcCCCCeEEEecCC------CcEEEEeCCCCCChhh
Q psy11100 75 AIIWNEQYEKLTSSDET------GLIIVWMLYKCNDDDE 107 (110)
Q Consensus 75 ~~~~s~~~~~l~s~~~~------~~i~~w~~~~~~~~~~ 107 (110)
++++.++|.++++.-.+ ..|..++.. |+....
T Consensus 89 gi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~ 126 (326)
T PF13449_consen 89 GIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRR 126 (326)
T ss_pred HeEEecCCCEEEEeCCccCCCCCCEEEEECCC-Ccccce
Confidence 56777888888888878 788888866 665443
No 475
>PF09631 Sen15: Sen15 protein; InterPro: IPR018593 The Sen15 subunit of the tRNA intron-splicing endonuclease is one of the two structural subunits of this heterotetrameric enzyme. Residues 36-157 of this subunit possess a novel homodimeric fold. Each monomer consists of three alpha-helices and a mixed antiparallel/parallel beta-sheet. Two monomers of Sen15 fold with two monomers of Sen34, one of the two catalytic subunits, to form an alpha2-beta2 tetramer as part of the functional endonuclease assembly []. ; PDB: 2GW6_B.
Probab=20.53 E-value=1.2e+02 Score=16.39 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=11.5
Q ss_pred EEEecCCCcEEEEeCCCCC
Q psy11100 85 LTSSDETGLIIVWMLYKCN 103 (110)
Q Consensus 85 l~s~~~~~~i~~w~~~~~~ 103 (110)
+|..+.|++|-.|.+.+|-
T Consensus 77 LAiv~~DsTiVYY~i~~Gi 95 (101)
T PF09631_consen 77 LAIVDDDSTIVYYKIHDGI 95 (101)
T ss_dssp EEEE-TTS-EEEEEEE---
T ss_pred EEEEcCCCCEEEEEEeCCc
Confidence 6777889999888877663
Done!