RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11100
(110 letters)
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller;
3.30A {Saccharomyces cerevisiae}
Length = 416
Score = 45.8 bits (109), Expect = 4e-07
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 10/70 (14%)
Query: 10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH 69
++ ++K N L W N IA D+G L++ + + + H
Sbjct: 63 SLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSM----------ARFSNH 112
Query: 70 SGKVRAIIWN 79
S V+ + +N
Sbjct: 113 SSSVKTVKFN 122
Score = 39.6 bits (93), Expect = 5e-05
Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 7/83 (8%)
Query: 17 VNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
V + ++ Q +A GG++G + + ++ ES +N +V +
Sbjct: 116 VKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTES-----PSNYTPLTPGQSMSSVDEVIS 170
Query: 76 IIWNEQYEK-LTSSDETGLIIVW 97
+ WN+ S+ + +W
Sbjct: 171 LAWNQSLAHVFASAGSSNFASIW 193
Score = 38.1 bits (89), Expect = 2e-04
Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 13/86 (15%)
Query: 17 VNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
V LAW+Q+ A G + L KE +L+ G ++
Sbjct: 168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI--------HLSYTSPNSGIKQQLSV 219
Query: 76 IIWN--EQYEKLTSS--DETGLIIVW 97
+ W+ T++ D I++W
Sbjct: 220 VEWHPKNSTRVATATGSDNDPSILIW 245
Score = 31.5 bits (72), Expect = 0.036
Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 17/86 (19%)
Query: 17 VNCLAWH-QNQGWIAVGGDDGLLKVLKL-DTGKESTGQVAAANVNLAMNQSLQGHSGKVR 74
++ + WH +N +A + + D N N + QGH +
Sbjct: 217 LSVVEWHPKNSTRVATATGSDNDPSILIWD----------LRNANTPLQTLNQGHQKGIL 266
Query: 75 AIIWNEQYEKL---TSSDETGLIIVW 97
++ W Q E L + D T +++W
Sbjct: 267 SLDWCHQDEHLLLSSGRDNT--VLLW 290
Score = 30.8 bits (70), Expect = 0.056
Identities = 7/83 (8%), Positives = 23/83 (27%), Gaps = 16/83 (19%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSG--KVR 74
++ + A D L++ L + + K
Sbjct: 26 PLLVSGTVSGTVDANFSTDSSLELWSLLAADSE--------------KPIASLQVDSKFN 71
Query: 75 AIIWNEQYEKLTSSDETGLIIVW 97
+ W+ + + + + G + ++
Sbjct: 72 DLDWSHNNKIIAGALDNGSLELY 94
Score = 29.6 bits (67), Expect = 0.18
Identities = 9/85 (10%), Positives = 19/85 (22%), Gaps = 20/85 (23%)
Query: 17 VNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
+ L W + G D + + ++ ++
Sbjct: 265 ILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ--------------LSQFPARGNWCFK 310
Query: 76 IIWNEQYEKLT---SSDETGLIIVW 97
+ + L S D I V
Sbjct: 311 TKFAPEAPDLFACASFDNK--IEVQ 333
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis
complex; 2.40A {Saccharomyces cerevisiae}
Length = 902
Score = 45.6 bits (107), Expect = 5e-07
Identities = 10/83 (12%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
Query: 15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVR 74
K+ + + W+ +G +G + V +D + S+ ++ + + +
Sbjct: 99 GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKL---DNLQKSSFFPAARLSPIV 155
Query: 75 AIIWNEQYEKLTSSDETGLIIVW 97
+I WN + + + +
Sbjct: 156 SIQWNPRDIGTVLISYEYVTLTY 178
Score = 34.8 bits (79), Expect = 0.003
Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 8/84 (9%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKE-STGQVAAANVNLAMNQSLQGHSGKVRA 75
V +H N I +D L ++G V +N+ ++ S
Sbjct: 214 VIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAK 273
Query: 76 II---WNEQYEKLTSSDETGLIIV 96
I W + + + T L+I
Sbjct: 274 ISKVYWMCE----NNPEYTSLLIS 293
Score = 34.5 bits (78), Expect = 0.004
Identities = 8/84 (9%), Positives = 24/84 (28%), Gaps = 16/84 (19%)
Query: 14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKV 73
++K A+ Q +A+ G + + E ++ +
Sbjct: 17 SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQV-EVVIKL--------------EDRSAI 61
Query: 74 RAIIWNEQYEKLTSSDETGLIIVW 97
+ + + + L + + V
Sbjct: 62 KEMRFVKG-IYLVVINAKDTVYVL 84
Score = 34.5 bits (78), Expect = 0.004
Identities = 7/85 (8%), Positives = 25/85 (29%), Gaps = 4/85 (4%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKE----STGQVAAANVNLAMNQSLQGHSGK 72
+ + W+ + + + L + A ++ + + K
Sbjct: 154 IVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPK 213
Query: 73 VRAIIWNEQYEKLTSSDETGLIIVW 97
V +++ + + E ++ W
Sbjct: 214 VIQSLYHPNSLHIITIHEDNSLVFW 238
Score = 30.2 bits (67), Expect = 0.11
Identities = 10/69 (14%), Positives = 28/69 (40%)
Query: 3 IYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAM 62
+ LS+ + V+ +++ +AV + G + + K + + + + + +L M
Sbjct: 477 VNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEM 536
Query: 63 NQSLQGHSG 71
N +
Sbjct: 537 NFRRFSLNN 545
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor,
phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila
melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A*
3gfc_A 3cfs_B 3cfv_B
Length = 430
Score = 44.0 bits (104), Expect = 2e-06
Identities = 19/85 (22%), Positives = 28/85 (32%), Gaps = 6/85 (7%)
Query: 17 VNCLAWHQNQGWI-AVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
+ + W + I A G D L V L E A + + GH+ K+
Sbjct: 324 IFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD 383
Query: 76 IIWNEQYEKL---TSSDETGLIIVW 97
WN + S D + VW
Sbjct: 384 FSWNPNEPWIICSVSEDNI--MQVW 406
Score = 40.9 bits (96), Expect = 2e-05
Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 15/93 (16%)
Query: 17 VNCLAWHQNQGWI-AVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
VNCL+++ +I A G D + + L K S + H ++
Sbjct: 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL-------------HSFESHKDEIFQ 326
Query: 76 IIWNEQYEK-LTSSDETGLIIVWMLYKCNDDDE 107
+ W+ E L SS + VW L K ++
Sbjct: 327 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359
Score = 40.1 bits (94), Expect = 4e-05
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 6/95 (6%)
Query: 5 LSKKIAIPNNTKVNCLAWH-QNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMN 63
+ +I I + +VN + QN IA + V +L
Sbjct: 119 IEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDL--- 175
Query: 64 QSLQGHSGKVRAIIWNEQYEK-LTSSDETGLIIVW 97
L+GH + + WN L S+ + I +W
Sbjct: 176 -RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLW 209
Score = 39.7 bits (93), Expect = 4e-05
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 15/84 (17%)
Query: 17 VNCLAWHQNQGWI-AVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
V +AWH + DD L + DT +T + + ++ H+ +V
Sbjct: 234 VEDVAWHLLHESLFGSVADDQKLMIW--DTRNNNTSKPS---------HTVDAHTAEVNC 282
Query: 76 IIWNEQYEKL--TSSDETGLIIVW 97
+ +N E + T S + + +W
Sbjct: 283 LSFNPYSEFILATGSAD-KTVALW 305
Score = 34.3 bits (79), Expect = 0.004
Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 13/85 (15%)
Query: 17 VNCLAW-HQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
L+W G++ DD + + ++ + + A GH+ V
Sbjct: 184 GYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDA-------KNIFTGHTAVVED 236
Query: 76 IIWNEQYEKL---TSSDETGLIIVW 97
+ W+ +E L + D+ +++W
Sbjct: 237 VAWHLLHESLFGSVADDQK--LMIW 259
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase,
spliceosome, DNA damage, D repair, mRNA processing,
nucleus; 2.60A {Saccharomyces cerevisiae}
Length = 343
Score = 43.2 bits (101), Expect = 3e-06
Identities = 14/92 (15%), Positives = 37/92 (40%), Gaps = 15/92 (16%)
Query: 11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHS 70
++ + + H++ +A+ DG+L V L + + A ++
Sbjct: 167 AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQ------------ASSRFPVDEE 214
Query: 71 GKVRAIIWNEQ-YEKLTSSDETGLIIVWMLYK 101
K++ + + + Y + D+T ++ + L K
Sbjct: 215 AKIKEVKFADNGYWMVVECDQT--VVCFDLRK 244
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX,
D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 401
Score = 42.2 bits (100), Expect = 7e-06
Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 16/81 (19%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V + W + +++VG +GL+ + +++ + +++ GH +V +
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTK--------------LRTMAGHQARVGCL 182
Query: 77 IWNEQYEKLTSSDETGLIIVW 97
WN L+S +G I
Sbjct: 183 SWNRHV--LSSGSRSGAIHHH 201
Score = 35.3 bits (82), Expect = 0.002
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 14/62 (22%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V LAW + +A GG+D ++++ + + H+ V+A+
Sbjct: 220 VCGLAWRSDGLQLASGGNDNVVQIWDARSSIPK--------------FTKTNHNAAVKAV 265
Query: 77 IW 78
W
Sbjct: 266 AW 267
Score = 29.1 bits (66), Expect = 0.22
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 15/63 (23%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V CL+W N+ ++ G G + + +LQGHS +V +
Sbjct: 179 VGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQI-------------GTLQGHSSEVCGL 223
Query: 77 IWN 79
W
Sbjct: 224 AWR 226
Score = 25.3 bits (56), Expect = 5.8
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 15/81 (18%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+N L W + + + V D+G S S V ++
Sbjct: 96 LNLLDWSNLN--VVAVALERNVYVWNADSGSVSALA-------------ETDESTYVASV 140
Query: 77 IWNEQYEKLTSSDETGLIIVW 97
W+ L+ GL+ ++
Sbjct: 141 KWSHDGSFLSVGLGNGLVDIY 161
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF,
cofilin, structural genomics, PSI, protein structure
initiative; 1.70A {Caenorhabditis elegans} SCOP:
b.69.4.1 b.69.4.1 PDB: 1pev_A
Length = 611
Score = 41.4 bits (98), Expect = 1e-05
Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 17/93 (18%)
Query: 7 KKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL 66
K +P + +C+A ++ ++AVGG D + V KL S +
Sbjct: 441 KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVK-------------T 487
Query: 67 QGHSGKVRAIIW--NEQYEKLTSSDETGLIIVW 97
H ++ ++ + N + L ++D++ +I +
Sbjct: 488 IVHPAEITSVAFSNNGAF--LVATDQSRKVIPY 518
Score = 40.6 bits (96), Expect = 2e-05
Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 15/83 (18%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+ +A+ N ++ + + E LA S H+ KV +
Sbjct: 494 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFE-----------LAHTNSWTFHTAKVACV 542
Query: 77 IWNEQYEKL--TSSDETGLIIVW 97
W+ +L S D + +IVW
Sbjct: 543 SWSPDNVRLATGSLDNS--VIVW 563
Score = 36.8 bits (86), Expect = 6e-04
Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 14/81 (17%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
L + + +G + + + G Q GH+ + A+
Sbjct: 285 DQQLGIIWTKQALVSISANGFINFVNPELGSID--------------QVRYGHNKAITAL 330
Query: 77 IWNEQYEKLTSSDETGLIIVW 97
+ + L S+D G I W
Sbjct: 331 SSSADGKTLFSADAEGHINSW 351
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/81 (12%), Positives = 24/81 (29%), Gaps = 13/81 (16%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+ L+ + + +G + + TG + H+ + I
Sbjct: 327 ITALSSSADGKTLFSADAEGHINSWDISTGISNR-------------VFPDVHATMITGI 373
Query: 77 IWNEQYEKLTSSDETGLIIVW 97
+ + T S + L +V
Sbjct: 374 KTTSKGDLFTVSWDDHLKVVP 394
Score = 34.9 bits (81), Expect = 0.003
Identities = 8/62 (12%), Positives = 15/62 (24%), Gaps = 12/62 (19%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+ + A G G +++ + SG V+ I
Sbjct: 62 TTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTT------------IPVFSGPVKDI 109
Query: 77 IW 78
W
Sbjct: 110 SW 111
Score = 33.7 bits (78), Expect = 0.007
Identities = 8/61 (13%), Positives = 19/61 (31%), Gaps = 15/61 (24%)
Query: 17 VNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
+N + + + I G DD + + + K + H+ V +
Sbjct: 150 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF--------------KSTFGEHTKFVHS 195
Query: 76 I 76
+
Sbjct: 196 V 196
Score = 32.2 bits (74), Expect = 0.021
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 7/62 (11%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V+ + ++ + A G DG + + G + V + HSG V +
Sbjct: 193 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK-------TGVFEDDSLKNVAHSGSVFGL 245
Query: 77 IW 78
W
Sbjct: 246 TW 247
Score = 31.8 bits (73), Expect = 0.027
Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 16/84 (19%)
Query: 16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
KV C++W + +A G D + V ++ + + H+
Sbjct: 538 KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII------------KGAHAMSSVN 585
Query: 76 IIWNEQYEKL--TSSDETGLIIVW 97
+ + D I W
Sbjct: 586 SVIWLNETTIVSAGQDSN--IKFW 607
Score = 31.0 bits (71), Expect = 0.062
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 16/62 (25%)
Query: 17 VNCLAWHQNQGWIAVGGD--DGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVR 74
V ++W IA G+ + V DTG + +L G + +
Sbjct: 106 VKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSN--------------GNLTGQARAMN 151
Query: 75 AI 76
++
Sbjct: 152 SV 153
Score = 26.4 bits (59), Expect = 1.9
Identities = 18/83 (21%), Positives = 25/83 (30%), Gaps = 17/83 (20%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVR-- 74
V L W + IA D +K+ + T K G + +
Sbjct: 242 VFGLTWSPDGTKIASASADKTIKIWNVATLKV-------------EKTIPVGTRIEDQQL 288
Query: 75 AIIWNEQYEKLTSSDETGLIIVW 97
IIW +Q L S G I
Sbjct: 289 GIIWTKQA--LVSISANGFINFV 309
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat,
biosynthetic prote structural genomics, structural
genomics consortium; 1.70A {Homo sapiens}
Length = 345
Score = 40.6 bits (96), Expect = 2e-05
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 10/84 (11%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+ +AW Q G +A D ++V + D + + Q HS V +
Sbjct: 255 IYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTA-----HLHQAHSQDVNCV 309
Query: 77 IWNEQYEKL---TSSDETGLIIVW 97
WN + L S D + W
Sbjct: 310 AWNPKEPGLLASCSDDGE--VAFW 331
Score = 37.9 bits (89), Expect = 2e-04
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 11/65 (16%)
Query: 14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKV 73
+++ LAW+ +A G D +++ + + + +GH V
Sbjct: 16 DSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW-----------ICKSVLSEGHQRTV 64
Query: 74 RAIIW 78
R + W
Sbjct: 65 RKVAW 69
Score = 36.4 bits (85), Expect = 7e-04
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 12/63 (19%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V + WH +Q +A D +K+ + + L+GH V ++
Sbjct: 153 VKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCAT------------LEGHESTVWSL 200
Query: 77 IWN 79
++
Sbjct: 201 AFD 203
Score = 29.8 bits (68), Expect = 0.13
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 11/62 (17%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V +AW + +A D + V ++D E L H+ V+ +
Sbjct: 108 VKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV-----------SVLNSHTQDVKHV 156
Query: 77 IW 78
+W
Sbjct: 157 VW 158
Score = 29.8 bits (68), Expect = 0.14
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 15/54 (27%)
Query: 17 VNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH 69
VNC+AW+ + +A DDG + K + H
Sbjct: 306 VNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG--------------LHHHHHH 345
Score = 29.5 bits (67), Expect = 0.17
Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 12/63 (19%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V +AW ++A D + K + L+GH +V+++
Sbjct: 64 VRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTT------------LEGHENEVKSV 111
Query: 77 IWN 79
W
Sbjct: 112 AWA 114
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 40.5 bits (95), Expect = 3e-05
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 18/83 (21%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V + + WI VG DD ++V +TG++ + H +R+I
Sbjct: 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEK--------------VVDFEAHPDYIRSI 103
Query: 77 IWNEQYEKLTSS--DETGLIIVW 97
+ + S D T + +W
Sbjct: 104 AVHPTKPYVLSGSDDLT--VKLW 124
Score = 37.8 bits (88), Expect = 3e-04
Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 18/84 (21%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+ +A H + ++ G DD +K+ + + Q+ +GH V +
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA-------------LEQTFEGHEHFVMCV 146
Query: 77 IWNEQYEKL---TSSDETGLIIVW 97
+N + D T + VW
Sbjct: 147 AFNPKDPSTFASGCLDRT--VKVW 168
Score = 36.2 bits (84), Expect = 9e-04
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 14/60 (23%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V + +H + W+ G +++ +T +S+Q VRA
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVEIWNYETQV--------------EVRSIQVTETPVRAG 61
Score = 34.7 bits (80), Expect = 0.003
Identities = 15/84 (17%), Positives = 24/84 (28%), Gaps = 19/84 (22%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V+ +H I G +DG LK+ T K ++L + I
Sbjct: 231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE--------------KTLNVGLERSWCI 276
Query: 77 IW--NEQYEKLTS-SDETGLIIVW 97
+ + S D V
Sbjct: 277 ATHPTGRKNYIASGFDNG--FTVL 298
Score = 32.4 bits (74), Expect = 0.021
Identities = 14/83 (16%), Positives = 31/83 (37%), Gaps = 16/83 (19%)
Query: 17 VNCLAWHQ--NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVR 74
VN + ++ ++ ++ DD +K+ T +L+GH V
Sbjct: 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV--------------ATLEGHMSNVS 232
Query: 75 AIIWNEQYEKLTSSDETGLIIVW 97
+++ + S E G + +W
Sbjct: 233 FAVFHPTLPIIISGSEDGTLKIW 255
Score = 28.5 bits (64), Expect = 0.41
Identities = 13/112 (11%), Positives = 31/112 (27%), Gaps = 22/112 (19%)
Query: 16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKES-------------TGQVAAANV---- 58
K W + A+ + G +K K S +G +
Sbjct: 394 KCQDFVWGPDSNSYALIDETGQIKYYKNFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFV 453
Query: 59 ---NLAMNQSLQGHSGKVRAIIWNE--QYEKLTSSDETGLIIVWMLYKCNDD 105
+ ++ + +IW++ + + +++ G N D
Sbjct: 454 YFFDWDNGTLVRRIDVNAKDVIWSDNGELVMIVNTNSNGDEASGYTLLFNKD 505
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 40.6 bits (95), Expect = 3e-05
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 16/83 (19%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V C A+ + +IA D +K+ TGK + HS +V
Sbjct: 660 VLCCAFSSDDSYIATCSADKKVKIWDSATGKL--------------VHTYDEHSEQVNCC 705
Query: 77 IW--NEQYEKLTSSDETGLIIVW 97
+ + L + + +W
Sbjct: 706 HFTNKSNHLLLATGSNDFFLKLW 728
Score = 40.2 bits (94), Expect = 4e-05
Identities = 11/81 (13%), Positives = 30/81 (37%), Gaps = 1/81 (1%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
VN + + +A DG L++ + + E + L+ + V+
Sbjct: 746 VNHCRFSPDDELLASCSADGTLRLWDVRSANE-RKSINVKRFFLSSEDPPEDVEVIVKCC 804
Query: 77 IWNEQYEKLTSSDETGLIIVW 97
W+ +K+ + + +++
Sbjct: 805 SWSADGDKIIVAAKNKVLLFD 825
Score = 39.4 bits (92), Expect = 7e-05
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 14/81 (17%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V+C + ++A G +DG +K+++L + S GH VR I
Sbjct: 964 VSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVF--------------SSGVGHKKAVRHI 1009
Query: 77 IWNEQYEKLTSSDETGLIIVW 97
+ + L SS E +I VW
Sbjct: 1010 QFTADGKTLISSSEDSVIQVW 1030
Score = 38.3 bits (89), Expect = 2e-04
Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 14/81 (17%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V + Q+ IA G D L+V K +TG++ ++ H +V
Sbjct: 618 VYHACFSQDGQRIASCGADKTLQVFKAETGEKL--------------LDIKAHEDEVLCC 663
Query: 77 IWNEQYEKLTSSDETGLIIVW 97
++ + + + +W
Sbjct: 664 AFSSDDSYIATCSADKKVKIW 684
Score = 36.7 bits (85), Expect = 6e-04
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 14/81 (17%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V A + + D K+ D L+GH+G VR
Sbjct: 1088 VLSCAISSDATKFSSTSADKTAKIWSFDLLSPL--------------HELKGHNGCVRCS 1133
Query: 77 IWNEQYEKLTSSDETGLIIVW 97
++ L + D+ G I +W
Sbjct: 1134 AFSLDGILLATGDDNGEIRIW 1154
Score = 36.7 bits (85), Expect = 6e-04
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 15/81 (18%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V Q+ + DG +KV + TG+ + H G V +
Sbjct: 1047 VKDFRLLQD-SRLLSWSFDGTVKVWNVITGRIE--------------RDFTCHQGTVLSC 1091
Query: 77 IWNEQYEKLTSSDETGLIIVW 97
+ K +S+ +W
Sbjct: 1092 AISSDATKFSSTSADKTAKIW 1112
Score = 36.3 bits (84), Expect = 0.001
Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V C A+ + +A G D+G +++ + S GQ+ + +++ + H G V +
Sbjct: 1130 VRCSAFSLDGILLATGDDNGEIRIWNV-----SDGQLLHSCAPISVEEGTATHGGWVTDV 1184
Query: 77 IWNEQYEKLTSSDETGLIIVW 97
++ + L S+ + W
Sbjct: 1185 CFSPDSKTLVSAGGY--LKWW 1203
Score = 36.0 bits (83), Expect = 0.001
Identities = 11/81 (13%), Positives = 24/81 (29%), Gaps = 17/81 (20%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+ + +N+ + + L+++ TG Q +V
Sbjct: 925 EIDVVFQENETMVLAVDNIRGLQLIAGKTG-----------------QIDYLPEAQVSCC 967
Query: 77 IWNEQYEKLTSSDETGLIIVW 97
+ E + DE G I +
Sbjct: 968 CLSPHLEYVAFGDEDGAIKII 988
Score = 35.6 bits (82), Expect = 0.002
Identities = 7/81 (8%), Positives = 24/81 (29%), Gaps = 14/81 (17%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+ + + +++ +D+ + +GH V +
Sbjct: 843 IQYCDFSPYDHLAVIALSQYCVELWNIDSRLKV--------------ADCRGHLSWVHGV 888
Query: 77 IWNEQYEKLTSSDETGLIIVW 97
+++ ++ + I VW
Sbjct: 889 MFSPDGSSFLTASDDQTIRVW 909
Score = 34.8 bits (80), Expect = 0.003
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 14/81 (17%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V C +W + I V + KVL D ++G +A + GH ++
Sbjct: 801 VKCCSWSADGDKIIVAAKN---KVLLFDI--HTSGLLA---------EIHTGHHSTIQYC 846
Query: 77 IWNEQYEKLTSSDETGLIIVW 97
++ + + +W
Sbjct: 847 DFSPYDHLAVIALSQYCVELW 867
Score = 34.4 bits (79), Expect = 0.003
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 18/82 (21%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V + + + + +D +++V TG LQ H V+
Sbjct: 1006 VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF---------------LQAHQETVKDF 1050
Query: 77 IWNEQYEKLT-SSDETGLIIVW 97
+ L+ S D T + VW
Sbjct: 1051 RLLQDSRLLSWSFDGT--VKVW 1070
Score = 32.5 bits (74), Expect = 0.021
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 16/83 (19%)
Query: 17 VNCLAWH--QNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVR 74
VNC + N +A G +D LK+ L+ + ++ GH+ V
Sbjct: 702 VNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR--------------NTMFGHTNSVN 747
Query: 75 AIIWNEQYEKLTSSDETGLIIVW 97
++ E L S G + +W
Sbjct: 748 HCRFSPDDELLASCSADGTLRLW 770
Score = 29.4 bits (66), Expect = 0.20
Identities = 11/81 (13%), Positives = 26/81 (32%), Gaps = 16/81 (19%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V + + + + G LK + TG S Q+ + ++ I
Sbjct: 1181 VTDVCFSPDSKTLVSAGGY--LKWWNVATGDSS--------------QTFYTNGTNLKKI 1224
Query: 77 IWNEQYEKLTSSDETGLIIVW 97
+ + + D G++ +
Sbjct: 1225 HVSPDFRTYVTVDNLGILYIL 1245
Score = 26.7 bits (59), Expect = 2.0
Identities = 11/96 (11%), Positives = 29/96 (30%)
Query: 2 FIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLA 61
F+ L+ + V L + DTG+ + +
Sbjct: 547 FLSLNGHLLGRQPFPNIVQLGLCEPETSEVYRQAKLQAKQEGDTGRLYLEWINKKTIKNL 606
Query: 62 MNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 97
++ H+ V +++ +++ S + V+
Sbjct: 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVF 642
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD
repeat, scaffold protein, ATP- binding, endosome, golgi
apparatus; 1.80A {Saccharomyces cerevisiae}
Length = 437
Score = 39.8 bits (93), Expect = 5e-05
Identities = 14/87 (16%), Positives = 34/87 (39%), Gaps = 3/87 (3%)
Query: 14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTG--QVAAANVNLAMNQSLQGHSG 71
++ V + N AV DG + VLK++ ++ + + + ++ +
Sbjct: 111 SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEY 170
Query: 72 KVRAIIWN-EQYEKLTSSDETGLIIVW 97
VR + E+ L + +I++
Sbjct: 171 AVRMRAFVNEEKSLLVALTNLSRVIIF 197
Score = 30.5 bits (69), Expect = 0.084
Identities = 3/32 (9%), Positives = 12/32 (37%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKE 48
V+ + + + +G G++ + +
Sbjct: 217 VSSICIDEECCVLILGTTRGIIDIWDIRFNVL 248
Score = 29.8 bits (67), Expect = 0.16
Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 17 VNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
+ A + ++ G D G++K+ + + G+V ++++ S V
Sbjct: 66 ITSSAVSPGETPYLITGSDQGVIKIW--NLKEIIVGEVYSSSL-------TYDCSSTVTQ 116
Query: 76 IIWNEQYEKLTSSDETGLIIVW 97
I ++ S + G IIV
Sbjct: 117 ITMIPNFDAFAVSSKDGQIIVL 138
Score = 29.4 bits (66), Expect = 0.17
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 17/84 (20%)
Query: 17 VNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQG--HSGKV 73
V A+ + + + + + + T + Q ++ G V
Sbjct: 172 VRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERL--------------QIIENSPRHGAV 217
Query: 74 RAIIWNEQYEKLTSSDETGLIIVW 97
+I +E+ L G+I +W
Sbjct: 218 SSICIDEECCVLILGTTRGIIDIW 241
Score = 25.1 bits (55), Expect = 6.9
Identities = 9/106 (8%), Positives = 31/106 (29%), Gaps = 26/106 (24%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMN------------- 63
++ ++ ++ + + + L+ S ++ + +
Sbjct: 332 LSTISVSNDK-ILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLR 390
Query: 64 ----------QSLQGHSGKVRAIIW--NEQYEKLTSSDETGLIIVW 97
H + +I ++ L + D +GLI ++
Sbjct: 391 KMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIF 436
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori
complex, nuclear pore complex, macromolecular assembly,
MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A
3f3p_A 3ewe_A
Length = 351
Score = 38.8 bits (91), Expect = 1e-04
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 23/90 (25%)
Query: 17 VNCLAWHQNQGW---IAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKV 73
CL+W ++ +AV + + + GK L GH +
Sbjct: 170 DFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAK------------LPGHKSLI 217
Query: 74 RAIIW--NEQYEKLT----SSDETGLIIVW 97
R+I W + D I ++
Sbjct: 218 RSISWAPSIGRWYQLIATGCKDGR--IRIF 245
Score = 36.5 bits (85), Expect = 6e-04
Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 15/82 (18%)
Query: 17 VNCLAW-HQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVR 74
+ + W G IA D +K+ + E Q + +L G +
Sbjct: 60 IVAIDWASPEYGRIIASASYDKTVKLWE-----EDPDQEECSGRRWNKLCTLNDSKGSLY 114
Query: 75 AIIWNEQYEKLTSSDETGLIIV 96
++ + + GL +
Sbjct: 115 SVKF--------APAHLGLKLA 128
Score = 35.4 bits (82), Expect = 0.002
Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 10/88 (11%)
Query: 17 VNCLAW--HQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVR 74
+ + + +A G+DG+L++ + ++ H
Sbjct: 113 LYSVKFAPAHLGLKLACLGNDGILRLYDALEPS-DLRSWTLTSEMKVLSIPPANHLQSDF 171
Query: 75 AIIWN---EQYEKL--TSSDETGLIIVW 97
+ W EKL ++ ++ II
Sbjct: 172 CLSWCPSRFSPEKLAVSALEQA--IIYQ 197
Score = 32.3 bits (74), Expect = 0.018
Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 18/80 (22%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V+ + + +A D +KV KLD ++ + S + H + AI
Sbjct: 14 VHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS-NWEL---------SDSWRAHDSSIVAI 63
Query: 77 IWNEQYEKLTSSDETGLIIV 96
W +S E G II
Sbjct: 64 DW--------ASPEYGRIIA 75
Score = 27.3 bits (61), Expect = 0.91
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKE 48
V ++W+ ++ GDDG +++ K E
Sbjct: 309 VWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340
Score = 25.0 bits (55), Expect = 7.2
Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 20/67 (29%)
Query: 17 VNCLAWHQNQG----WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGK 72
+ ++W + G IA G DG +++ K+ L
Sbjct: 217 IRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKL----------------SPLASEESL 260
Query: 73 VRAIIWN 79
+ +++
Sbjct: 261 TNSNMFD 267
Score = 24.6 bits (54), Expect = 9.1
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 64 QSLQGHSGKVRAIIWNEQYEKL--TSSDETGLIIVWMLYKCNDDDEWK 109
H+G+V ++ WN L D + +W K +E+K
Sbjct: 300 SEHDDHNGEVWSVSWNLTGTILSSAGDDGK--VRLW---KATYSNEFK 342
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed
beta-propeller, protein binding; 2.30A {Saccharomyces
cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Length = 615
Score = 38.4 bits (90), Expect = 1e-04
Identities = 13/92 (14%), Positives = 32/92 (34%), Gaps = 13/92 (14%)
Query: 5 LSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQ 64
+S + P K + ++ ++ +IA G G + + L + + T +
Sbjct: 479 VSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR------------ 526
Query: 65 SLQGHSGKVRAIIWNEQYEKLTSSDETGLIIV 96
+ K+ AI W + + ++
Sbjct: 527 -WAFRTSKINAISWKPAEKGANEEEIEEDLVA 557
Score = 33.7 bits (78), Expect = 0.006
Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 17/85 (20%)
Query: 17 VNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
+N Q+ GDDG + + K A +++ VR
Sbjct: 163 INACHLKQSRPMRSMTVGDDGSVVFYQGPPFKF-----------SASDRTHHKQGSFVRD 211
Query: 76 IIWNEQYEKL---TSSDETGLIIVW 97
+ ++ + SD I +
Sbjct: 212 VEFSPDSGEFVITVGSDRK--ISCF 234
Score = 33.0 bits (76), Expect = 0.010
Identities = 7/63 (11%), Positives = 20/63 (31%), Gaps = 15/63 (23%)
Query: 17 VNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
V + + + G ++ G D + +G+ + ++ V+
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL--------------KYIEDDQEPVQG 254
Query: 76 IIW 78
I+
Sbjct: 255 GIF 257
Score = 33.0 bits (76), Expect = 0.010
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 18/71 (25%)
Query: 27 GWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLT 86
G I DG L +L + +++ GH+ + A+ N L
Sbjct: 310 GRIISLSLDGTLNFYELGHDEVL--------------KTISGHNKGITALTVN----PLI 351
Query: 87 SSDETGLIIVW 97
S G I+ W
Sbjct: 352 SGSYDGRIMEW 362
Score = 33.0 bits (76), Expect = 0.011
Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 8/74 (10%)
Query: 28 WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIW--NEQYEKL 85
++ G + G + V KES +V + + Q +G + I W + +
Sbjct: 80 YLCSGDESGKVIVWGWTFDKESN------SVEVNVKSEFQVLAGPISDISWDFEGRRLCV 133
Query: 86 TSSDETGLIIVWML 99
+
Sbjct: 134 VGEGRDNFGVFISW 147
Score = 31.8 bits (73), Expect = 0.032
Identities = 13/85 (15%), Positives = 29/85 (34%), Gaps = 19/85 (22%)
Query: 17 VNCLAWHQNQGWIAV--GGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVR 74
++ ++W + V G D + D+G + GHS ++
Sbjct: 119 ISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNS--------------LGEVSGHSQRIN 164
Query: 75 AIIW--NEQYEKLTSSDETGLIIVW 97
A + +T D+ G ++ +
Sbjct: 165 ACHLKQSRPMRSMTVGDD-GSVVFY 188
Score = 31.8 bits (73), Expect = 0.032
Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 26/93 (27%)
Query: 16 KVNCLAWH----------QNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQS 65
K+N ++W + +A G D + + + + ++
Sbjct: 533 KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKII-------------KA 579
Query: 66 LQGHSGKVRAIIWNEQYEKLTSS-DETGLIIVW 97
L H V ++W ++S D I W
Sbjct: 580 LNAHKDGVNNLLWETPSTLVSSGADAC--IKRW 610
Score = 24.9 bits (55), Expect = 6.3
Identities = 7/60 (11%), Positives = 15/60 (25%), Gaps = 23/60 (38%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+ L + + G DG + + Q HS + ++
Sbjct: 342 ITALTVNP----LISGSYDGRIMEWSSSSM-------------------HQDHSNLIVSL 378
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic
cleavage, mRNA transport, nuclear pore complex, nucleus,
phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Length = 316
Score = 38.0 bits (89), Expect = 2e-04
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 17/97 (17%)
Query: 17 VNCLAWHQNQG----WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGK 72
V +AW + G IA DG + + D +T + L +
Sbjct: 215 VRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSP----------KLLHKFNDV 264
Query: 73 VRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEWK 109
V + W+ L S + +W K + D +W
Sbjct: 265 VWHVSWSITANILAVSGGDNKVTLW---KESVDGQWV 298
Score = 33.0 bits (76), Expect = 0.010
Identities = 12/80 (15%), Positives = 23/80 (28%), Gaps = 20/80 (25%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
++ +A D +K+ + G + L+GH G V +
Sbjct: 16 IHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIA------------DLRGHEGPVWQV 63
Query: 77 IWNEQYEKLTSSDETGLIIV 96
W + G I+
Sbjct: 64 AW--------AHPMYGNILA 75
Score = 32.2 bits (74), Expect = 0.019
Identities = 15/82 (18%), Positives = 26/82 (31%), Gaps = 22/82 (26%)
Query: 17 VNCLAW-HQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVR 74
V +AW H G +A D + + + + G GH V
Sbjct: 60 VWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHE------------HAGHDSSVN 107
Query: 75 AIIWNEQYEKLTSSDETGLIIV 96
++ W + + GLI+
Sbjct: 108 SVCW--------APHDYGLILA 121
Score = 31.5 bits (72), Expect = 0.030
Identities = 20/104 (19%), Positives = 31/104 (29%), Gaps = 36/104 (34%)
Query: 17 VNCLAWH-----------------QNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVN 59
N ++W A GG D L+K+ K + +
Sbjct: 153 CNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ----------- 201
Query: 60 LAMNQSLQGHSGKVRAIIW--NEQYEKLT----SSDETGLIIVW 97
Q L+ HS VR + W + T S D + +W
Sbjct: 202 WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR--VFIW 243
Score = 30.3 bits (69), Expect = 0.078
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 13/65 (20%)
Query: 17 VNCLAW--HQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVR 74
VN + W H +A G DG + +L + + + H+
Sbjct: 106 VNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVK-----------KINNAHTIGCN 154
Query: 75 AIIWN 79
A+ W
Sbjct: 155 AVSWA 159
Score = 29.9 bits (68), Expect = 0.12
Identities = 7/62 (11%), Positives = 17/62 (27%), Gaps = 14/62 (22%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V ++W +AV G D + + K + + + ++
Sbjct: 265 VWHVSWSITANILAVSGGDNKVTLWKESVDGQW--------------VCISDVNKGQGSV 310
Query: 77 IW 78
Sbjct: 311 SA 312
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller,
structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1
PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C*
2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Length = 372
Score = 37.6 bits (88), Expect = 3e-04
Identities = 11/62 (17%), Positives = 27/62 (43%), Gaps = 12/62 (19%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
++C AW++++ IA+ ++ + + + K L+ H+G+V +
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHE------------LKEHNGQVTGV 58
Query: 77 IW 78
W
Sbjct: 59 DW 60
Score = 35.3 bits (82), Expect = 0.002
Identities = 10/66 (15%), Positives = 17/66 (25%), Gaps = 4/66 (6%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMN----QSLQGHSGK 72
V L WH N +A G D ++ + + G
Sbjct: 145 VLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW 204
Query: 73 VRAIIW 78
V + +
Sbjct: 205 VHGVCF 210
Score = 33.8 bits (78), Expect = 0.005
Identities = 8/62 (12%), Positives = 18/62 (29%), Gaps = 10/62 (16%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
C+ W N+ AVG ++ + + + + V ++
Sbjct: 99 ARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW----------VCKHIKKPIRSTVLSL 148
Query: 77 IW 78
W
Sbjct: 149 DW 150
Score = 31.1 bits (71), Expect = 0.050
Identities = 8/82 (9%), Positives = 25/82 (30%), Gaps = 15/82 (18%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V+ + + N +A D + + D +L + + A+
Sbjct: 205 VHGVCFSANGSRVAWVSHDSTVCLADADKKMAV--------------ATLASETLPLLAV 250
Query: 77 IWNEQYEKLTS-SDETGLIIVW 97
+ + + + D ++ +
Sbjct: 251 TFITESSLVAAGHDCFPVLFTY 272
Score = 25.3 bits (56), Expect = 4.7
Identities = 15/85 (17%), Positives = 22/85 (25%), Gaps = 20/85 (23%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V + W + I G D V L V + + R +
Sbjct: 55 VTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLV------------ILRINRAARCV 102
Query: 77 IW--NEQYEKL--TSSDETGLIIVW 97
W NE+ K S I +
Sbjct: 103 RWAPNEK--KFAVGSGSRV--ISIC 123
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor,
actin-binding, ATP-binding, cytoskeleton, nucleot
binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces
pombe}
Length = 377
Score = 37.4 bits (87), Expect = 3e-04
Identities = 8/93 (8%), Positives = 32/93 (34%), Gaps = 15/93 (16%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V+ + + + +A G D + + ++ + +++ +R++
Sbjct: 208 VHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRAL----------ITVKLSQLPLRSL 257
Query: 77 IWNEQYEKLTSSDETGLIIVWMLYKCNDDDEWK 109
+W + + + I++ ++ W
Sbjct: 258 LWANESAIVAAGYNYSPILLQ-----GNESGWA 285
Score = 37.0 bits (86), Expect = 5e-04
Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 3/97 (3%)
Query: 4 YLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKEST---GQVAAANVNL 60
++SK + P + + L WH N +A G D VL V + +
Sbjct: 136 WVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPF 195
Query: 61 AMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 97
+ G V A+ ++ L + + +
Sbjct: 196 NTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIA 232
Score = 35.1 bits (81), Expect = 0.002
Identities = 7/63 (11%), Positives = 18/63 (28%), Gaps = 10/63 (15%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+ W N+ AVG ++ V + + + + ++
Sbjct: 103 ATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSK----------HLKRPLRSTILSL 152
Query: 77 IWN 79
W+
Sbjct: 153 DWH 155
Score = 34.0 bits (78), Expect = 0.005
Identities = 8/83 (9%), Positives = 21/83 (25%), Gaps = 16/83 (19%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
A++ + +++ + D + H V +
Sbjct: 14 SYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHART------------FSDHDKIVTCV 61
Query: 77 IWNEQYEKL--TSSDETGLIIVW 97
W + ++ S D V+
Sbjct: 62 DWAPKSNRIVTCSQDRN--AYVY 82
Score = 26.6 bits (59), Expect = 1.8
Identities = 8/62 (12%), Positives = 12/62 (19%), Gaps = 11/62 (17%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V C+ W I D V + L + +
Sbjct: 58 VTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQT-----------LVLLRLNRAATFV 106
Query: 77 IW 78
W
Sbjct: 107 RW 108
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A
{Homo sapiens}
Length = 368
Score = 37.2 bits (87), Expect = 4e-04
Identities = 9/64 (14%), Positives = 18/64 (28%), Gaps = 15/64 (23%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V + W + + D K+ L + + + H V+ I
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ---------------IAQHDAPVKTI 133
Query: 77 IWNE 80
W +
Sbjct: 134 HWIK 137
Score = 34.6 bits (80), Expect = 0.003
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 14/63 (22%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
VN +A+H G +A G DG D + ++ + + A
Sbjct: 276 VNGIAFHPVHGTLATVGSDGRFSFWDKDARTKL--------------KTSEQLDQPISAC 321
Query: 77 IWN 79
+N
Sbjct: 322 CFN 324
Score = 24.9 bits (55), Expect = 6.2
Identities = 8/65 (12%), Positives = 22/65 (33%), Gaps = 15/65 (23%)
Query: 17 VNCLAW---HQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKV 73
+ CL++ ++ G ++ ++ ++ + Q H+G V
Sbjct: 42 IGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKA------------QQMHTGPV 89
Query: 74 RAIIW 78
+ W
Sbjct: 90 LDVCW 94
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural
protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Length = 402
Score = 37.0 bits (86), Expect = 4e-04
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 13/85 (15%)
Query: 17 VNCLAWH-QNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
V +AW N IA G +D + V ++ G +L+GH+ +V
Sbjct: 84 VLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPV-------ITLEGHTKRVGI 136
Query: 76 IIWNEQYEKL---TSSDETGLIIVW 97
+ W+ + + D I+VW
Sbjct: 137 VAWHPTAQNVLLSAGCDNV--ILVW 159
Score = 32.4 bits (74), Expect = 0.018
Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 13/83 (15%)
Query: 16 KVNCLAWHQN-QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVR 74
+V +AWH Q + G D ++ V + TG + H +
Sbjct: 133 RVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA------------VLTLGPDVHPDTIY 180
Query: 75 AIIWNEQYEKLTSSDETGLIIVW 97
++ W+ + +S + V
Sbjct: 181 SVDWSRDGALICTSCRDKRVRVI 203
Score = 25.0 bits (55), Expect = 5.5
Identities = 11/87 (12%), Positives = 30/87 (34%), Gaps = 21/87 (24%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSG-KVRA 75
+ + W ++ I D ++V++ G + + + H G +
Sbjct: 179 IYSVDWSRDGALICTSCRDKRVRVIEPRKGTV-------------VAEKDRPHEGTRPVH 225
Query: 76 IIWNEQYEKLT-----SSDETGLIIVW 97
++ + + LT S+ + +W
Sbjct: 226 AVFVSEGKILTTGFSRMSERQ--VALW 250
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 4e-04
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 14/66 (21%)
Query: 25 NQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH---SGKVRAIIWNEQ 81
N G +A L+ + GK + V N N+ NQ Q +G +RA+
Sbjct: 1813 NPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE-NQ--Q--YVAAGDLRAL----- 1862
Query: 82 YEKLTS 87
+ +T+
Sbjct: 1863 -DTVTN 1867
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription,
hypothetica protein, preinitiation complex, yeast RNA
polymerase III; 3.2A {Saccharomyces cerevisiae}
Length = 524
Score = 37.2 bits (85), Expect = 4e-04
Identities = 7/41 (17%), Positives = 12/41 (29%), Gaps = 3/41 (7%)
Query: 12 PNNTKVNCLAWHQNQ---GWIAVGGDDGLLKVLKLDTGKES 49
+ + C W++ A GLL + L
Sbjct: 481 AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLEHHH 521
Score = 32.5 bits (73), Expect = 0.017
Identities = 6/81 (7%), Positives = 18/81 (22%), Gaps = 14/81 (17%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+ + + L+ + L + AI
Sbjct: 358 LVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAV--------------HPLVSRETTITAI 403
Query: 77 IWNEQYEKLTSSDETGLIIVW 97
+ + + + G +I+
Sbjct: 404 GVSRLHPMVLAGSADGSLIIT 424
Score = 30.2 bits (67), Expect = 0.096
Identities = 6/89 (6%), Positives = 26/89 (29%), Gaps = 17/89 (19%)
Query: 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSG 71
++ + + + + G +G + L + + Q H
Sbjct: 264 LADSLITTFDFL-SPTTVVCGFKNGFVAEFDLTDPEVPS-------------FYDQVHDS 309
Query: 72 KVRAIIW---NEQYEKLTSSDETGLIIVW 97
+ ++ + + +++ G ++
Sbjct: 310 YILSVSTAYSDFEDTVVSTVAVDGYFYIF 338
Score = 26.8 bits (58), Expect = 1.8
Identities = 17/116 (14%), Positives = 29/116 (25%), Gaps = 33/116 (28%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVL-----------------------KLDTGKESTG-- 51
+ + + + G DG L + K D +
Sbjct: 400 ITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYR 459
Query: 52 -----QVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEK---LTSSDETGLIIVWML 99
+V VN + H + WNE S+ GL+ + L
Sbjct: 460 IDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYL 515
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40
repeat, beta propeller, recombination; 1.90A
{Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Length = 397
Score = 36.6 bits (85), Expect = 5e-04
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+ + G IA G ++G +++ +L T + N S+ +S +R++
Sbjct: 189 ATSVDISER-GLIATGFNNGTVQISELSTLRPLY--------NFESQHSMINNSNSIRSV 239
Query: 77 IW 78
+
Sbjct: 240 KF 241
Score = 33.9 bits (78), Expect = 0.006
Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 8/86 (9%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKL---DTGKESTGQVAAANVNLAMNQSLQGHSGKV 73
+ + + +A+ D + L + G+ G ++ + + HS V
Sbjct: 236 IRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER-IGSLSVPTHSSQASLGEFAHSSWV 294
Query: 74 RAIIWNEQYEKLTS--SDETGLIIVW 97
++ +N+ E L S D + W
Sbjct: 295 MSLSFNDSGETLCSAGWDGK--LRFW 318
Score = 26.6 bits (59), Expect = 1.6
Identities = 4/55 (7%), Positives = 12/55 (21%), Gaps = 4/55 (7%)
Query: 28 WIAVGGDDGLLKVLKLDTGKESTGQVAAANVN----LAMNQSLQGHSGKVRAIIW 78
+ G + K + + + +S S ++
Sbjct: 140 RLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI 194
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY
crystallography, beta-propeller, structure, mRNA export,
NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens}
PDB: 3fmo_A* 3fmp_A* 3fhc_A
Length = 434
Score = 36.8 bits (84), Expect = 5e-04
Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 8/73 (10%)
Query: 11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHS 70
+P+ V + W +AVG +G + ++ H
Sbjct: 189 LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKV--------IPCPPFYESDHP 240
Query: 71 GKVRAIIWNEQYE 83
+V ++W Y
Sbjct: 241 VRVLDVLWIGTYV 253
Score = 34.1 bits (77), Expect = 0.005
Identities = 12/86 (13%), Positives = 31/86 (36%), Gaps = 15/86 (17%)
Query: 13 NNTKVNCLAWH-QNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSG 71
V + W+ +AV DG + VL++ + + +
Sbjct: 148 AGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV--------------CATLPSTV 193
Query: 72 KVRAIIWNEQYEKLTSSDETGLIIVW 97
V ++ W+ + ++L + G ++ +
Sbjct: 194 AVTSVCWSPKGKQLAVGKQNGTVVQY 219
Score = 33.7 bits (76), Expect = 0.006
Identities = 15/98 (15%), Positives = 27/98 (27%), Gaps = 7/98 (7%)
Query: 5 LSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQ 64
+P + LA G + GG G L++ N + Q
Sbjct: 28 FDSPEELPKER-SSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQ 85
Query: 65 SLQ-GHSGKVRAIIWNEQYEKL----TSSDETGLIIVW 97
L + + + L SS+ +I +
Sbjct: 86 GLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFF 123
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A
{Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Length = 355
Score = 36.5 bits (84), Expect = 6e-04
Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 6/97 (6%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V + W + +AV D L V ++ +++ +N+ QS ++
Sbjct: 243 VVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSV 302
Query: 77 IWNEQYEKLTSSDETGLIIVW------MLYKCNDDDE 107
+ + K+ E+ L++VW +K DDE
Sbjct: 303 DKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDE 339
Score = 32.3 bits (73), Expect = 0.019
Identities = 7/72 (9%), Positives = 20/72 (27%), Gaps = 5/72 (6%)
Query: 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKE----STGQVAAANVNLAMNQSLQ 67
+ V ++Q+Q + + ++ + ++ + N
Sbjct: 17 HVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAF 75
Query: 68 GHSGKVRAIIWN 79
K IW+
Sbjct: 76 VTGVKEVVHIWD 87
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national
project on prote structural and functional analysis,
structural genomics CON SGC; HET: M3L; 1.58A {Homo
sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A*
3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Length = 366
Score = 36.1 bits (84), Expect = 9e-04
Identities = 13/88 (14%), Positives = 30/88 (34%), Gaps = 23/88 (26%)
Query: 17 VNCLAW----HQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGK 72
AW + + +AV G G+++++ T + + GH
Sbjct: 72 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCI--------------KHYVGHGNA 117
Query: 73 VRAIIWNEQYEKL---TSSDETGLIIVW 97
+ + ++ + L S D + +W
Sbjct: 118 INELKFHPRDPNLLLSVSKDHA--LRLW 143
Score = 34.5 bits (80), Expect = 0.003
Identities = 8/80 (10%), Positives = 25/80 (31%), Gaps = 10/80 (12%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V+C+ W + I + + K ++ ++ + N+ + + +
Sbjct: 234 VDCVRWLGD--LILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYM 291
Query: 77 IWNEQYEKLTSSDETGLIIV 96
+ S D ++
Sbjct: 292 RF--------SMDFWQKMLA 303
Score = 30.7 bits (70), Expect = 0.060
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 12/64 (18%)
Query: 17 VNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
+N L +H + D L++ + T +A+ ++GH +V +
Sbjct: 118 INELKFHPRDPNLLLSVSKDHALRLWNIQTDTL-----------VAIFGGVEGHRDEVLS 166
Query: 76 IIWN 79
++
Sbjct: 167 ADYD 170
Score = 30.3 bits (69), Expect = 0.096
Identities = 12/95 (12%), Positives = 25/95 (26%), Gaps = 16/95 (16%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKE-----------STGQVAA---ANVNLAM 62
V + I G D LK+ ++++ + ++
Sbjct: 164 VLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPD 223
Query: 63 NQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 97
+ H V + W S + I+ W
Sbjct: 224 FSTRDIHRNYVDCVRWLGDLILSKSCENA--IVCW 256
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision
repair, xeroderma pigmentosum, cytoplasm, DNA repair;
HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B*
4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Length = 383
Score = 36.2 bits (84), Expect = 9e-04
Identities = 9/82 (10%), Positives = 22/82 (26%), Gaps = 13/82 (15%)
Query: 17 VNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
+ + ++Q + V G + QV
Sbjct: 121 ITGMKFNQFNTNQLFVSSIRGATTLRDFSGS---VIQVF---------AKTDSWDYWYCC 168
Query: 76 IIWNEQYEKLTSSDETGLIIVW 97
+ + + L + D TG +++
Sbjct: 169 VDVSVSRQMLATGDSTGRLLLL 190
Score = 34.6 bits (80), Expect = 0.003
Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 13/64 (20%)
Query: 17 VNCLAWHQNQGW-IAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
V L WH +AVG G + + D +++ G +
Sbjct: 76 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF------------IQGMGPGDAITG 123
Query: 76 IIWN 79
+ +N
Sbjct: 124 MKFN 127
Score = 34.3 bits (79), Expect = 0.005
Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 20/84 (23%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
C+ ++ +A G G L +L LD + + H KV
Sbjct: 166 YCCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFK---------------EKLHKAKVTHA 210
Query: 77 IWN--EQYEKLTSS-DETGLIIVW 97
+N + TSS D T + +W
Sbjct: 211 EFNPRCDWLMATSSVDAT--VKLW 232
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A
{Saccharomyces cerevisiae}
Length = 313
Score = 36.0 bits (84), Expect = 9e-04
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 19/84 (22%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKL---DTGKESTGQVAAANVNLAMNQSLQGHSGKV 73
+N + + + + GG D ++ + L +L GH G V
Sbjct: 62 LNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPL--------------YTLIGHQGNV 107
Query: 74 RAIIWNEQYEKLTSSDETGLIIVW 97
++ + + S D+T VW
Sbjct: 108 CSLSFQDGVVISGSWDKT--AKVW 129
Score = 32.5 bits (75), Expect = 0.013
Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 18/82 (21%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V C+ N G I G+D +++ + G Q + + + ++
Sbjct: 228 VYCIKLLPN-GDIVSCGEDRTVRIWSKENGSLK--------------QVITLPAISIWSV 272
Query: 77 IWNEQYEKLT-SSDETGLIIVW 97
+ + SSD + ++
Sbjct: 273 DCMSNGDIIVGSSDNL--VRIF 292
Score = 31.7 bits (73), Expect = 0.029
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 13/57 (22%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKV 73
+ + N G I VG D L+++ + + A ++G
Sbjct: 269 IWSVDCMSN-GDIIVGSSDNLVRIFSQEKSR------------WASEDEIKGELRSG 312
Score = 27.1 bits (61), Expect = 1.1
Identities = 5/53 (9%), Positives = 15/53 (28%), Gaps = 14/53 (26%)
Query: 27 GWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWN 79
+A DG +++ D + G + ++ ++
Sbjct: 30 SKVASVSRDGTVRLWSKDDQWLG--------------TVVYTGQGFLNSVCYD 68
Score = 25.6 bits (57), Expect = 3.9
Identities = 17/82 (20%), Positives = 31/82 (37%), Gaps = 18/82 (21%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V LA + G +DGL+K++ + TG ++ +GH V I
Sbjct: 187 VRHLAVVDD-GHFISCSNDGLIKLVDMHTGDVL--------------RTYEGHESFVYCI 231
Query: 77 IWNEQYEKLTSS-DETGLIIVW 97
+ ++ D T + +W
Sbjct: 232 KLLPNGDIVSCGEDRT--VRIW 251
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage
repair; HET: DNA; 3.31A {Homo sapiens}
Length = 408
Score = 35.7 bits (83), Expect = 0.001
Identities = 13/82 (15%), Positives = 21/82 (25%), Gaps = 18/82 (21%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V+C + N + G D + + +
Sbjct: 337 VDCCVFQSNFQELYSGSRDCNILAWVPSLY-----------------EPVPDDDETTTKS 379
Query: 77 IWNEQYEKL-TSSDETGLIIVW 97
N +E +SSDE G W
Sbjct: 380 QLNPAFEDAWSSSDEEGGTSAW 401
Score = 34.9 bits (81), Expect = 0.002
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 22/87 (25%)
Query: 17 VNCLAWH---QNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKV 73
V +AVG +++ L +G S LQGH ++
Sbjct: 144 VYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS--------------HILQGHRQEI 189
Query: 74 RAIIWNEQYEKL---TSSDETGLIIVW 97
A+ W+ +Y+ + S+D + +W
Sbjct: 190 LAVSWSPRYDYILATASADSR--VKLW 214
Score = 32.6 bits (75), Expect = 0.013
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 17 VNCLAWHQNQGWI-AVGGDDGLLKVLKLDTGKE--STGQVAAANVNLAMNQSLQGHSGKV 73
+ ++W +I A D +K+ + T + A+ + H+GKV
Sbjct: 189 ILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV 248
Query: 74 RAIIW 78
+ +
Sbjct: 249 NGLCF 253
Score = 31.1 bits (71), Expect = 0.050
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 7/85 (8%)
Query: 17 VNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
+N L +G ++ GG DG++ + L+ V H V
Sbjct: 46 INTLDIEPVEGRYMLSGGSDGVIVLYDLENSSR-QSYYTCKAVCSIGRDHPDVHRYSVET 104
Query: 76 IIWNEQYEKL---TSSDETGLIIVW 97
+ W + +S D+T + VW
Sbjct: 105 VQWYPHDTGMFTSSSFDKT--LKVW 127
Score = 26.4 bits (59), Expect = 2.1
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 18/72 (25%)
Query: 28 WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS 87
+ V + +G++ L+GH V ++ +++L S
Sbjct: 306 EFVFVPYGSTIAVYTVYSGEQI--------------TMLKGHYKTVDCCVFQSNFQELYS 351
Query: 88 --SDETGLIIVW 97
D I+ W
Sbjct: 352 GSRDCN--ILAW 361
Score = 24.5 bits (54), Expect = 9.5
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKE 48
VN L + + + G D +++ G+
Sbjct: 248 VNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN 279
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat
protein TRM82; S-adenosyl-L-methionine, tRNA processing,
phosphorylation, M7G, spout MT, WD repeat; 2.40A
{Saccharomyces cerevisiae}
Length = 450
Score = 35.8 bits (82), Expect = 0.001
Identities = 13/82 (15%), Positives = 27/82 (32%), Gaps = 11/82 (13%)
Query: 17 VNCLAWHQNQGW-IAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
+ L ++ IA D L V +D ++ ++ + S + A
Sbjct: 105 IRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKL----------RKRFCFSKRPNA 154
Query: 76 IIWNEQYEKLTSSDETGLIIVW 97
I E + +D+ G +
Sbjct: 155 ISIAEDDTTVIIADKFGDVYSI 176
Score = 32.0 bits (72), Expect = 0.028
Identities = 8/85 (9%), Positives = 31/85 (36%), Gaps = 13/85 (15%)
Query: 16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
+ N ++ ++ + + G + + +++ E + + GH +
Sbjct: 151 RPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQ----------EPILGHVSMLTD 200
Query: 76 IIW---NEQYEKLTSSDETGLIIVW 97
+ ++ ++ + +SD I +
Sbjct: 201 VHLIKDSDGHQFIITSDRDEHIKIS 225
Score = 27.7 bits (61), Expect = 0.74
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKE 48
V+ + ++ + G D + TGK
Sbjct: 244 VSSICCGKD-YLLLSAGGDDKIFAWDWKTGKN 274
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A
{Saccharomyces cerevisiae}
Length = 330
Score = 35.3 bits (82), Expect = 0.001
Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 18/85 (21%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V + WH ++ +A D +++ K V L GH G V +
Sbjct: 156 VKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAV------------LNGHEGTVWSS 203
Query: 77 IW--NEQYEKL--TSSDETGLIIVW 97
+ E +L S D T + VW
Sbjct: 204 DFDKTEGVFRLCSGSDDST--VRVW 226
Score = 33.3 bits (77), Expect = 0.009
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 11/62 (17%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V +AW N G IA G DG+L V + G+ ++L ++ +
Sbjct: 253 VYNVAWGFN-GLIASVGADGVLAVYEEVDGEWKVFAK----------RALCHGVYEINVV 301
Query: 77 IW 78
W
Sbjct: 302 KW 303
Score = 32.9 bits (76), Expect = 0.010
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 12/63 (19%)
Query: 16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
K+ + Q +A G D +K++ + + V H +R+
Sbjct: 16 KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDV----------LDETAHKKAIRS 63
Query: 76 IIW 78
+ W
Sbjct: 64 VAW 66
Score = 31.4 bits (72), Expect = 0.036
Identities = 10/63 (15%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+ +AW + +A G D + + + + T + + + ++GH +V+ +
Sbjct: 61 IRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFE-------MDLLAIIEGHENEVKGV 113
Query: 77 IWN 79
W+
Sbjct: 114 AWS 116
Score = 30.2 bits (69), Expect = 0.11
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 10/62 (16%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V +AW + ++A D + + + D E + LQ HS V+ +
Sbjct: 110 VKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECI----------SVLQEHSQDVKHV 159
Query: 77 IW 78
IW
Sbjct: 160 IW 161
Score = 25.6 bits (57), Expect = 3.9
Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 17 VNCLAWHQNQG--WIAVGGDDGLLKVLKLDTG 46
+N + W + G +A GGDDG++ L+
Sbjct: 298 INVVKWLELNGKTILATGGDDGIVNFWSLEKA 329
Score = 24.5 bits (54), Expect = 9.1
Identities = 3/16 (18%), Positives = 10/16 (62%)
Query: 64 QSLQGHSGKVRAIIWN 79
+SL+ + K+ + ++
Sbjct: 8 KSLKLYKEKIWSFDFS 23
>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Length = 379
Score = 35.4 bits (82), Expect = 0.002
Identities = 13/97 (13%), Positives = 27/97 (27%), Gaps = 15/97 (15%)
Query: 17 VNCLAWHQNQG---WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKV 73
V +AW ++A D + D + + + +
Sbjct: 209 VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLK---------EEKFPDVL 259
Query: 74 RAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEWKR 110
W+ L S + +W K N + +W+
Sbjct: 260 WRASWSLSGNVLALSGGDNKVTLW---KENLEGKWEP 293
Score = 32.7 bits (75), Expect = 0.012
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 23/75 (30%)
Query: 17 VNCLAWH-------------QNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMN 63
VN +W + GG D L+K+ K ++ + T +
Sbjct: 150 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-TYVLE--------- 199
Query: 64 QSLQGHSGKVRAIIW 78
+L+GHS VR + W
Sbjct: 200 STLEGHSDWVRDVAW 214
Score = 30.0 bits (68), Expect = 0.12
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 22/82 (26%)
Query: 17 VNCLAW-HQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVR 74
V + W H G +A DG + + K + G+ + HS V
Sbjct: 58 VWRVDWAHPKFGTILASCSYDGKVLIWKEENGR------------WSQIAVHAVHSASVN 105
Query: 75 AIIWNEQYEKLTSSDETGLIIV 96
++ W + E G +++
Sbjct: 106 SVQW--------APHEYGPLLL 119
Score = 28.8 bits (65), Expect = 0.31
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 14/65 (21%)
Query: 17 VNCLAW--HQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVR 74
VN + W H+ + V DG + V++ ++ + + H+ V
Sbjct: 104 VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII------------IDAHAIGVN 151
Query: 75 AIIWN 79
+ W
Sbjct: 152 SASWA 156
Score = 27.7 bits (62), Expect = 0.89
Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 20/80 (25%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
++ +A D +K+ +++ T ++ +L GH G V +
Sbjct: 14 IHDAVLDYYGKRLATCSSDKTIKIFEVEGE---THKLI---------DTLTGHEGPVWRV 61
Query: 77 IWNEQYEKLTSSDETGLIIV 96
W + + G I+
Sbjct: 62 DW--------AHPKFGTILA 73
Score = 26.1 bits (58), Expect = 2.8
Identities = 11/92 (11%), Positives = 23/92 (25%), Gaps = 17/92 (18%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGK--ESTGQVAAANVN--------------- 59
+ +W + +A+ G D + + K + E G+V
Sbjct: 259 LWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVHQGGGGSGGGGATSKEFDGPC 318
Query: 60 LAMNQSLQGHSGKVRAIIWNEQYEKLTSSDET 91
L E+ ++ T
Sbjct: 319 QNEIDLLFSECNDEIDNAKLIMKERRFTASYT 350
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta
transducin repeat all beta, signaling protein; 1.10A
{Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A
2i3s_A 2i3t_A
Length = 342
Score = 34.4 bits (79), Expect = 0.003
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 13/75 (17%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
VN + + ++ G DG++ L T K+ + + + V I
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK-------------IKNFAKFNEDSVVKI 300
Query: 77 IWNEQYEKLTSSDET 91
++ L +SD+T
Sbjct: 301 ACSDNILCLATSDDT 315
Score = 33.3 bits (76), Expect = 0.008
Identities = 10/80 (12%), Positives = 18/80 (22%), Gaps = 23/80 (28%)
Query: 17 VNCLAWHQNQGW-IAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
+ C + N I VG G + + L Q+L + +
Sbjct: 59 LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF--------------QALTNNEANLGI 104
Query: 76 IIWNEQYEKLTSSDETGLII 95
+I
Sbjct: 105 CRI--------CKYGDDKLI 116
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor,
WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB:
2zkq_a
Length = 340
Score = 34.4 bits (80), Expect = 0.004
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 10/61 (16%)
Query: 17 VNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
V +A I D + + KL + + G ++L+GHS V
Sbjct: 41 VTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQ---------RALRGHSHFVSD 91
Query: 76 I 76
+
Sbjct: 92 V 92
Score = 30.2 bits (69), Expect = 0.094
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 16/62 (25%)
Query: 17 VNCLAWHQN--QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVR 74
V+C+ + N I G D L+KV L K + GH+G +
Sbjct: 174 VSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK--------------TNHIGHTGYLN 219
Query: 75 AI 76
+
Sbjct: 220 TV 221
Score = 29.4 bits (67), Expect = 0.18
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 15/72 (20%)
Query: 29 IAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKL--- 85
+ G D G + E + +L+GH+G V I Q+ +
Sbjct: 7 HSSGVDLGTENLYFQSMMTE-QMTLR---------GTLKGHNGWVTQIATTPQFPDMILS 56
Query: 86 TSSDETGLIIVW 97
S D+T II+W
Sbjct: 57 ASRDKT--IIMW 66
Score = 27.5 bits (62), Expect = 0.95
Identities = 8/63 (12%), Positives = 21/63 (33%), Gaps = 8/63 (12%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKL-DTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
+N L + N+ W+ + K+ D + ++ S + + +
Sbjct: 259 INALCFSPNRYWLCAATGPSI----KIWDL---EGKIIVDELKQEVISTSSKAEPPQCTS 311
Query: 76 IIW 78
+ W
Sbjct: 312 LAW 314
Score = 26.7 bits (60), Expect = 1.6
Identities = 11/60 (18%), Positives = 22/60 (36%), Gaps = 14/60 (23%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V+ + + + G DG L++ L TG + + GH+ V ++
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTT--------------RRFVGHTKDVLSV 134
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller,
3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core
complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A*
2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A
3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A
2h13_A 3p4f_A 4a7j_A* 2h9l_A ...
Length = 312
Score = 34.0 bits (79), Expect = 0.004
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 18/83 (21%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
++ +AW + + DD LK+ + +GK ++L+GHS V
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCL--------------KTLKGHSNYVFCC 113
Query: 77 IWNEQYEKL--TSSDETGLIIVW 97
+N Q + S DE+ + +W
Sbjct: 114 NFNPQSNLIVSGSFDES--VRIW 134
Score = 32.0 bits (74), Expect = 0.021
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 14/63 (22%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V+ + + N W+A D L+K+ GK +++ GH + +
Sbjct: 26 VSSVKFSPNGEWLASSSADKLIKIWGAYDGKF--------------EKTISGHKLGISDV 71
Query: 77 IWN 79
W+
Sbjct: 72 AWS 74
Score = 30.1 bits (69), Expect = 0.090
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 14/63 (22%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V+ + + N +I D LK+ GK ++ GH + I
Sbjct: 195 VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL--------------KTYTGHKNEKYCI 240
Query: 77 IWN 79
N
Sbjct: 241 FAN 243
Score = 27.8 bits (63), Expect = 0.67
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 14/63 (22%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V C ++ I G D +++ + TGK ++L HS V A+
Sbjct: 110 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--------------KTLPAHSDPVSAV 155
Query: 77 IWN 79
+N
Sbjct: 156 HFN 158
Score = 24.7 bits (55), Expect = 6.9
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 14/49 (28%)
Query: 28 WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
WI G +D L+ + L T + Q LQGH+ V +
Sbjct: 251 WIVSGSEDNLVYIWNLQTKEIV--------------QKLQGHTDVVIST 285
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40
repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Length = 425
Score = 34.2 bits (79), Expect = 0.004
Identities = 8/67 (11%), Positives = 20/67 (29%), Gaps = 15/67 (22%)
Query: 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSG 71
+ + + W + + G G + V ++ + L GH G
Sbjct: 204 GDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPT--------------GKLIGHHG 248
Query: 72 KVRAIIW 78
+ + +
Sbjct: 249 PISVLEF 255
Score = 32.2 bits (74), Expect = 0.018
Identities = 7/70 (10%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 17 VNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANV------NLAMNQSLQGH 69
+ W+ +A G + + ++ ++ + + + A++ S
Sbjct: 48 IVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKT 107
Query: 70 SGKVRAIIWN 79
+ +V + W+
Sbjct: 108 TNQVTCLAWS 117
Score = 30.7 bits (70), Expect = 0.077
Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 15/83 (18%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+ Q+ AV DG + V L ++SL G+ +
Sbjct: 333 IFAGRISQDGQKYAVAFMDGQVNVYDLKKLNS-------------KSRSLYGNRDGILNP 379
Query: 77 IWNEQYEKL--TSSDETGLIIVW 97
+ Y + ++ + W
Sbjct: 380 LPIPLYASYQSSQDNDYIFDLSW 402
Score = 30.3 bits (69), Expect = 0.085
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 19/83 (22%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V CLAW + I G ++G L++ TG + L H + ++
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLW------NKTGALL---------NVLNFHRAPIVSV 155
Query: 77 IWNEQYEKL--TSSDETGLIIVW 97
WN+ + + I+W
Sbjct: 156 KWNKDGTHIISMDVENV--TILW 176
Score = 29.9 bits (68), Expect = 0.13
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 14/62 (22%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
++ L ++ + DDG L++ G GHS + +
Sbjct: 250 ISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQ--------------NCFYGHSQSIVSA 295
Query: 77 IW 78
W
Sbjct: 296 SW 297
Score = 27.2 bits (61), Expect = 1.1
Identities = 7/83 (8%), Positives = 27/83 (32%), Gaps = 4/83 (4%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKE-STGQVAAANVNLAMNQSLQGHSGKVRA 75
+ + W+++ I + + + + +G ++ + ++ G
Sbjct: 152 IVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVD 211
Query: 76 IIWNEQYEKLTSS-DETGLIIVW 97
+ W + + + I V+
Sbjct: 212 VEWVDDDKFVIPGPKGA--IFVY 232
Score = 26.5 bits (59), Expect = 1.7
Identities = 5/60 (8%), Positives = 13/60 (21%), Gaps = 15/60 (25%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+ +W + + DG +++ L + A
Sbjct: 292 IVSASWVGD-DKVISCSMDGSVRLWSLKQNTLL--------------ALSIVDGVPIFAG 336
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 34.1 bits (79), Expect = 0.005
Identities = 3/84 (3%), Positives = 11/84 (13%), Gaps = 12/84 (14%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+ + + A + I
Sbjct: 111 TFTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIA-------FCDTDSPMRYVDI 163
Query: 77 IW--NEQYEKLTSS-DETGLIIVW 97
N + ++ +
Sbjct: 164 GIPANNKGKQSIGCLFWL--LARM 185
Score = 30.6 bits (70), Expect = 0.068
Identities = 2/61 (3%), Positives = 8/61 (13%), Gaps = 14/61 (22%)
Query: 16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
+ + Q+ + + H+
Sbjct: 68 VIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAH--------------AIAGRHTPGTFT 113
Query: 76 I 76
Sbjct: 114 N 114
Score = 29.1 bits (66), Expect = 0.28
Identities = 6/83 (7%), Positives = 17/83 (20%), Gaps = 19/83 (22%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+ ++ GK + LQ + + AI
Sbjct: 28 HLGTKNCDF-QMERYVYKRRTDGIYIINLGKTW--------------EKLQLAARVIVAI 72
Query: 77 IWNEQYEKLT--SSDETGLIIVW 97
+ + + ++
Sbjct: 73 ENPQDIIVQSARPYGQR--AVLK 93
Score = 25.2 bits (56), Expect = 5.8
Identities = 1/62 (1%), Positives = 8/62 (12%), Gaps = 16/62 (25%)
Query: 17 VNCLAWH-QNQGWIAVGGDDGLLKVLKL-DTGKESTGQVAAANVNLAMNQSLQGHSGKVR 74
+ + A + + + + +
Sbjct: 208 YRDPEEAKEQEEEEAALVAP---DYGAVAEY--AAPAADT---------WGGEWGTDAAA 253
Query: 75 AI 76
Sbjct: 254 QP 255
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein;
RACK1, WD40, beta propeller, ribosome, translation,
acetylation; 2.13A {Saccharomyces cerevisiae} PDB:
3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A
3jyv_R*
Length = 319
Score = 34.0 bits (79), Expect = 0.005
Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 10/61 (16%)
Query: 17 VNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
V LA Q + D L KL + G +S +GHS V+
Sbjct: 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPV---------RSFKGHSHIVQD 70
Query: 76 I 76
Sbjct: 71 C 71
Score = 27.9 bits (63), Expect = 0.55
Identities = 9/66 (13%), Positives = 20/66 (30%), Gaps = 20/66 (30%)
Query: 17 VNCLAWHQNQG------WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHS 70
V+ + N+ I G+D ++K L+ + GH+
Sbjct: 151 VSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE--------------ADFIGHN 196
Query: 71 GKVRAI 76
+ +
Sbjct: 197 SNINTL 202
Score = 26.7 bits (60), Expect = 1.7
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 55 AANVNLAMNQSLQGHSGKVRAIIWNEQYEKL---TSSDETGLIIVW 97
A+N L + +L+GH+G V ++ + L S D+T +I W
Sbjct: 2 ASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKT--LISW 45
Score = 26.7 bits (60), Expect = 1.7
Identities = 9/60 (15%), Positives = 17/60 (28%), Gaps = 14/60 (23%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V + + D L++ + TG+ Q GH V ++
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETY--------------QRFVGHKSDVMSV 113
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A,
receptor for activiated protein C-kinase 1,
beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia
coli}
Length = 694
Score = 33.9 bits (78), Expect = 0.005
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 10/65 (15%)
Query: 13 NNTKVNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSG 71
+ V +A + I D + + KL ++ G + L GHS
Sbjct: 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQ---------RRLTGHSH 431
Query: 72 KVRAI 76
V +
Sbjct: 432 FVEDV 436
Score = 29.3 bits (66), Expect = 0.22
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 16/62 (25%)
Query: 17 VNCLAWHQN--QGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVR 74
V+C+ + N Q I D +KV L K +L GH+G V
Sbjct: 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL--------------RSTLAGHTGYVS 565
Query: 75 AI 76
+
Sbjct: 566 TV 567
Score = 24.6 bits (54), Expect = 9.3
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 14/60 (23%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V + + + G DG L++ L G + + GH+ V ++
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVST--------------RRFVGHTKDVLSV 478
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional
CO-repressor, WD40, transcription repressor, WD repeat;
1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Length = 337
Score = 33.6 bits (78), Expect = 0.007
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 15/60 (25%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+ L + W+AVG + ++VL ++ + L H V ++
Sbjct: 227 IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ---------------LHLHESCVLSL 271
Score = 29.0 bits (66), Expect = 0.27
Identities = 8/60 (13%), Positives = 17/60 (28%), Gaps = 12/60 (20%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+ + + VGG+ L + L T ++ L + A+
Sbjct: 100 IRSCKLLPDGCTLIVGGEASTLSIWDLAAP---TPRIK---------AELTSSAPACYAL 147
Score = 27.1 bits (61), Expect = 1.3
Identities = 10/60 (16%), Positives = 13/60 (21%), Gaps = 15/60 (25%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V L + W G D LL + G S V +
Sbjct: 268 VLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS---------------IFQSKESSSVLSC 312
Score = 26.3 bits (59), Expect = 2.0
Identities = 10/60 (16%), Positives = 14/60 (23%), Gaps = 14/60 (23%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
LA + DG + V L + QGH+ I
Sbjct: 144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLV--------------RQFQGHTDGASCI 189
Score = 25.1 bits (56), Expect = 6.2
Identities = 6/60 (10%), Positives = 13/60 (21%), Gaps = 10/60 (16%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V + + GG + KV + + +R+
Sbjct: 54 VCAVTISNPTRHVYTGGKGCV-KVWDISHPGNKSPVSQ---------LDCLNRDNYIRSC 103
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit;
lissencephaly, platelet activacting factor, regulator of
cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Length = 410
Score = 33.7 bits (78), Expect = 0.007
Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 18/83 (21%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V + +H +I DD L+V + ++L H V ++
Sbjct: 341 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM--------------KTLNAHEHFVTSL 386
Query: 77 IWNEQYEKL--TSSDETGLIIVW 97
+++ + S D+T + VW
Sbjct: 387 DFHKTAPYVVTGSVDQT--VKVW 407
Score = 32.2 bits (74), Expect = 0.023
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 18/83 (21%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V + +H + +D +KV +TG ++L+GH+ V+ I
Sbjct: 111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--------------RTLKGHTDSVQDI 156
Query: 77 IWNEQYEKLT--SSDETGLIIVW 97
++ + L S+D T I +W
Sbjct: 157 SFDHSGKLLASCSADMT--IKLW 177
Score = 31.8 bits (73), Expect = 0.033
Identities = 12/83 (14%), Positives = 29/83 (34%), Gaps = 18/83 (21%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V +++ + +A D +K+ + +++ GH V ++
Sbjct: 153 VQDISFDHSGKLLASCSADMTIKLWDFQGFECI--------------RTMHGHDHNVSSV 198
Query: 77 IWNEQYEKLT--SSDETGLIIVW 97
+ + S D+T I +W
Sbjct: 199 SIMPNGDHIVSASRDKT--IKMW 219
Score = 29.1 bits (66), Expect = 0.23
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 16/77 (20%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V + +Q+ IA +D ++V + T + L+ H V I
Sbjct: 237 VRMVRPNQDGTLIASCSNDQTVRVWVVATKECK--------------AELREHRHVVECI 282
Query: 77 IW--NEQYEKLTSSDET 91
W Y ++ + +
Sbjct: 283 SWAPESSYSSISEATGS 299
Score = 27.9 bits (63), Expect = 0.61
Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 18/83 (21%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V+ ++ N I D +K+ ++ TG ++ GH VR +
Sbjct: 195 VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV--------------KTFTGHREWVRMV 240
Query: 77 IWNEQYEKL--TSSDETGLIIVW 97
N+ + S+D+T + VW
Sbjct: 241 RPNQDGTLIASCSNDQT--VRVW 261
Score = 26.0 bits (58), Expect = 2.4
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 14/71 (19%)
Query: 6 SKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQS 65
S +I T + ++ G D +K+ + TG +
Sbjct: 288 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL--------------MT 333
Query: 66 LQGHSGKVRAI 76
L GH VR +
Sbjct: 334 LVGHDNWVRGV 344
Score = 25.6 bits (57), Expect = 3.4
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 64 QSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 97
+L GH V +I++ + + S+ E I VW
Sbjct: 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVW 135
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type
2 promoters, transcription, hypothetica protein,
preinitiation complex, yeast RNA polymerase III; 3.2A
{Saccharomyces cerevisiae}
Length = 588
Score = 33.2 bits (75), Expect = 0.010
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 3/89 (3%)
Query: 13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGK 72
++ +C W+ + I VG +DG L+ + E+T ++ S G
Sbjct: 128 SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENT---PEFYFESSIRLSDAGSKDW 184
Query: 73 VRAIIWNEQYEKLTSSDETGLIIVWMLYK 101
V I+W E S+ + +
Sbjct: 185 VTHIVWYEDVLVAALSNNSVFSMTVSASS 213
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling
protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1
b.69.4.1
Length = 435
Score = 33.1 bits (76), Expect = 0.010
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 15/81 (18%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V L + N G + D + V + + + + + + L GH V +
Sbjct: 216 VLHLRF--NNGMMVTCSKDRSIAVWDMASPTD-----------ITLRRVLVGHRAAVNVV 262
Query: 77 IWNEQYEKLTSSDETGLIIVW 97
++++Y S D T I VW
Sbjct: 263 DFDDKYIVSASGDRT--IKVW 281
Score = 31.1 bits (71), Expect = 0.042
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 22/83 (26%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V CL + I G D +K+ +T + + L GH+G V +
Sbjct: 136 VYCLQYDDQ--KIVSGLRDNTIKIWDKNTLECK--------------RILTGHTGSVLCL 179
Query: 77 IWNEQYEKLT--SSDETGLIIVW 97
++E+ + SSD T + VW
Sbjct: 180 QYDER--VIITGSSDST--VRVW 198
Score = 31.1 bits (71), Expect = 0.046
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V C+ + + I G DG +KV L + + ++L HSG+V +
Sbjct: 339 VRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCL-----RTLVEHSGRVFRL 391
Query: 77 IWNEQYEKLTSSDETGLIIVW 97
++E +S D+T I++W
Sbjct: 392 QFDEFQIVSSSHDDT--ILIW 410
Score = 28.8 bits (65), Expect = 0.31
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 18/81 (22%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
VN + + I D +KV T + ++L GH + +
Sbjct: 259 VNVVDFDDKY--IVSASGDRTIKVWNTSTCEF--------------VRTLNGHKRGIACL 302
Query: 77 IWNEQYEKLTSSDETGLIIVW 97
+ ++ SSD T I +W
Sbjct: 303 QYRDRLVVSGSSDNT--IRLW 321
Score = 27.3 bits (61), Expect = 0.92
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 22/84 (26%)
Query: 16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
+ CL + + G D +++ ++ G + L+GH VR
Sbjct: 298 GIACLQYRDRL--VVSGSSDNTIRLWDIECGACL--------------RVLEGHEELVRC 341
Query: 76 IIWNEQYEKLTS--SDETGLIIVW 97
I ++ + + S D I VW
Sbjct: 342 IRFDNKR--IVSGAYDGK--IKVW 361
Score = 25.4 bits (56), Expect = 4.4
Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 18/81 (22%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V CL + + I G D ++V ++TG+ +L H V +
Sbjct: 176 VLCLQYDER--VIITGSSDSTVRVWDVNTGEML--------------NTLIHHCEAVLHL 219
Query: 77 IWNEQYEKLTSSDETGLIIVW 97
+N S D + I VW
Sbjct: 220 RFNNGMMVTCSKDRS--IAVW 238
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40
beta-barrel fold, DNA D DNA repair, HOST-virus
interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB:
3ei4_B*
Length = 435
Score = 33.1 bits (76), Expect = 0.011
Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 13/61 (21%)
Query: 17 VNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
LAWH +AVG G + + + T G G +
Sbjct: 122 ATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTF------------IKGIGAGGSITG 169
Query: 76 I 76
+
Sbjct: 170 L 170
Score = 31.6 bits (72), Expect = 0.032
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 15/63 (23%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
L + + G + G + +L +D + L+ H KV +
Sbjct: 212 FCSLDVSASSRMVVTGDNVGNVILLNMDGKELWN---------------LRMHKKKVTHV 256
Query: 77 IWN 79
N
Sbjct: 257 ALN 259
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A
{Saccharomyces cerevisiae}
Length = 369
Score = 32.6 bits (75), Expect = 0.014
Identities = 10/84 (11%), Positives = 20/84 (23%), Gaps = 17/84 (20%)
Query: 16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
W +I G DG + + E S+ H +
Sbjct: 177 AATVAGWSTKGKYIIAGHKDGKISKYDVSNNYE-------------YVDSIDLHEKSISD 223
Query: 76 IIWNEQYEKL--TSSDETGLIIVW 97
+ ++ +S D +
Sbjct: 224 MQFSPDLTYFITSSRDTN--SFLV 245
Score = 27.6 bits (62), Expect = 0.87
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGK 47
+N +A A GG+DG +++ +
Sbjct: 318 LNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348
Score = 26.0 bits (58), Expect = 3.0
Identities = 8/63 (12%), Positives = 20/63 (31%), Gaps = 14/63 (22%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+ + +++ + D V G+ +L GH+G + +I
Sbjct: 35 LTQVKYNKEGDLLFSCSKDSSASVWYSLNGERL--------------GTLDGHTGTIWSI 80
Query: 77 IWN 79
+
Sbjct: 81 DVD 83
Score = 26.0 bits (58), Expect = 3.1
Identities = 14/90 (15%), Positives = 25/90 (27%), Gaps = 18/90 (20%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKE---------STGQVAAANVNLAMNQSLQ 67
+N + +I +GG V + + +Q
Sbjct: 262 LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI---------GRVQ 312
Query: 68 GHSGKVRAIIWNEQYEKLTSSDETGLIIVW 97
GH G + + + Q S E G I +
Sbjct: 313 GHFGPLNTVAISPQGTSYASGGEDGFIRLH 342
Score = 24.5 bits (54), Expect = 8.2
Identities = 4/83 (4%), Positives = 22/83 (26%), Gaps = 17/83 (20%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
++ + + + + D ++ + T + + + +
Sbjct: 221 ISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL--------------KKYETDCP-LNTA 265
Query: 77 IW--NEQYEKLTSSDETGLIIVW 97
+ +++ L E +
Sbjct: 266 VITPLKEFIILGGGQEAKDVTTT 288
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double
phosphorylation, transcription-C complex; HET: TPO;
2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB:
2ovp_B* 2ovq_B*
Length = 445
Score = 32.3 bits (74), Expect = 0.018
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 18/81 (22%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V C+ H+ + G D L+V ++TG+ L GH VR +
Sbjct: 202 VRCMHLHEK--RVVSGSRDATLRVWDIETGQCL--------------HVLMGHVAAVRCV 245
Query: 77 IWNEQYEKLTSSDETGLIIVW 97
++ + + D + VW
Sbjct: 246 QYDGRRVVSGAYDFM--VKVW 264
Score = 31.9 bits (73), Expect = 0.026
Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 20/79 (25%)
Query: 21 AWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNE 80
I G DD LKV TGK ++L GH+G V + +
Sbjct: 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCL--------------RTLVGHTGGVWSSQMRD 169
Query: 81 QYEKLT--SSDETGLIIVW 97
+ S+D T + VW
Sbjct: 170 N--IIISGSTDRT--LKVW 184
Score = 30.3 bits (69), Expect = 0.086
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 18/81 (22%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V C+ + + G D ++KV +T +LQGH+ +V ++
Sbjct: 242 VRCVQYDGR--RVVSGAYDFMVKVWDPETETC--------------LHTLQGHTNRVYSL 285
Query: 77 IWNEQYEKLTSSDETGLIIVW 97
++ + S D + I VW
Sbjct: 286 QFDGIHVVSGSLDTS--IRVW 304
Score = 29.6 bits (67), Expect = 0.17
Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 18/81 (22%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V N I G D LKV +TG+ +L GH+ VR +
Sbjct: 162 VWSSQMRDN--IIISGSTDRTLKVWNAETGECI--------------HTLYGHTSTVRCM 205
Query: 77 IWNEQYEKLTSSDETGLIIVW 97
+E+ S D T + VW
Sbjct: 206 HLHEKRVVSGSRDAT--LRVW 224
Score = 26.9 bits (60), Expect = 1.6
Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 18/81 (22%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V L + + G D ++V ++TG +L GH +
Sbjct: 282 VYSLQFDGIH--VVSGSLDTSIRVWDVETGNCI--------------HTLTGHQSLTSGM 325
Query: 77 IWNEQYEKLTSSDETGLIIVW 97
+ ++D T + +W
Sbjct: 326 ELKDNILVSGNADST--VKIW 344
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS
domain, DEP domain, DHEX domain, GGL domain, propeller,
signaling protein; 1.95A {Mus musculus}
Length = 354
Score = 32.1 bits (74), Expect = 0.021
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 14/61 (22%)
Query: 16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
KV C+ W +++ I DG + V T + ++ V A
Sbjct: 66 KVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKE--------------HAVTMPCTWVMA 111
Query: 76 I 76
Sbjct: 112 C 112
Score = 31.4 bits (72), Expect = 0.035
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 14/84 (16%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGK-ESTGQVAAANVNLAMNQSLQGHSGKVRA 75
V A+ + IA GG D V L K E+ +S+ H+ + A
Sbjct: 109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKK---------KSVAMHTNYLSA 159
Query: 76 IIWNEQYEKLTSS--DETGLIIVW 97
+ ++ ++ D T +W
Sbjct: 160 CSFTNSDMQILTASGDGT--CALW 181
Score = 27.9 bits (63), Expect = 0.58
Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 22/80 (27%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
++ ++ + I DG + +++G+ QS GH V +
Sbjct: 157 LSACSFTNSDMQILTASGDGTCALWDVESGQLL--------------QSFHGHGADVLCL 202
Query: 77 IWNEQYEKLTSSDETGLIIV 96
+ ETG V
Sbjct: 203 DL--------APSETGNTFV 214
Score = 27.5 bits (62), Expect = 0.73
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 43 LDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTS--SDETGLIIVW 97
++ + + A + ++L+GH KV + W + ++ S D +IVW
Sbjct: 37 VELHQVAERVEALGQFVMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGK--VIVW 91
Score = 26.4 bits (59), Expect = 2.3
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 16/62 (25%)
Query: 17 VNCLAWHQNQG--WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVR 74
V CL ++ GG D V + +G+ Q+ + H V
Sbjct: 199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCV--------------QAFETHESDVN 244
Query: 75 AI 76
++
Sbjct: 245 SV 246
Score = 26.0 bits (58), Expect = 3.0
Identities = 8/60 (13%), Positives = 18/60 (30%), Gaps = 14/60 (23%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+ + + + + G +D + V + G L GH +V +
Sbjct: 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR--------------VSILFGHENRVSTL 332
Score = 24.8 bits (55), Expect = 6.7
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKE 48
VN + ++ + A G DD ++ L +E
Sbjct: 243 VNSVRYYPSGDAFASGSDDATCRLYDLRADRE 274
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31;
beta propeller, alpha solenoid; 2.35A {Saccharomyces
cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Length = 297
Score = 31.8 bits (73), Expect = 0.024
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 23/75 (30%)
Query: 17 VNCLAWH-------------QNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMN 63
VN +W + GG D L+K+ K ++ + T +
Sbjct: 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ-TYVLE--------- 197
Query: 64 QSLQGHSGKVRAIIW 78
+L+GHS VR + W
Sbjct: 198 STLEGHSDWVRDVAW 212
Score = 29.9 bits (68), Expect = 0.14
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 14/65 (21%)
Query: 17 VNCLAW--HQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVR 74
VN + W H+ + V DG + V++ ++ + + H+ V
Sbjct: 102 VNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPII------------IDAHAIGVN 149
Query: 75 AIIWN 79
+ W
Sbjct: 150 SASWA 154
Score = 28.7 bits (65), Expect = 0.31
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 22/82 (26%)
Query: 17 VNCLAW-HQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVR 74
V + W H G +A DG + + K + G+ + HS V
Sbjct: 56 VWRVDWAHPKFGTILASCSYDGKVMIWKEENGR------------WSQIAVHAVHSASVN 103
Query: 75 AIIWNEQYEKLTSSDETGLIIV 96
++ W + E G +++
Sbjct: 104 SVQW--------APHEYGPMLL 117
Score = 26.4 bits (59), Expect = 2.2
Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 20/80 (25%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
++ +A D +K+ +++ T ++ +L GH G V +
Sbjct: 12 IHDAVMDYYGKRMATCSSDKTIKIFEVEGE---THKLID---------TLTGHEGPVWRV 59
Query: 77 IWNEQYEKLTSSDETGLIIV 96
W + + G I+
Sbjct: 60 DW--------AHPKFGTILA 71
Score = 25.7 bits (57), Expect = 3.3
Identities = 5/32 (15%), Positives = 14/32 (43%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKE 48
+ +W + +A+ G D + + K + +
Sbjct: 257 LWRASWSLSGNVLALSGGDNKVTLWKENLEGK 288
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer
signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP:
b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B*
1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A
3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B*
3sn6_B*
Length = 340
Score = 31.7 bits (73), Expect = 0.024
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V A+ + ++A GG D + + L T + N+ +++ L GH+G +
Sbjct: 100 VMTCAYAPSGNYVACGGLDNICSIYNLKTREG----------NVRVSRELAGHTGYLSCC 149
Query: 77 IWNEQYEKLTSS-DETGLIIVW 97
+ + + +TSS D T +W
Sbjct: 150 RFLDDNQIVTSSGDTT--CALW 169
Score = 31.3 bits (72), Expect = 0.033
Identities = 8/61 (13%), Positives = 16/61 (26%), Gaps = 14/61 (22%)
Query: 16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
K+ + W + + DG L + T + ++ S V
Sbjct: 57 KIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKV--------------HAIPLRSSWVMT 102
Query: 76 I 76
Sbjct: 103 C 103
Score = 28.3 bits (64), Expect = 0.43
Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 14/60 (23%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V L+ + G D K+ + G Q+ GH + AI
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCR--------------QTFTGHESDINAI 232
Score = 27.1 bits (61), Expect = 1.00
Identities = 9/60 (15%), Positives = 23/60 (38%), Gaps = 15/60 (25%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
++C + + I D + ++TG+++ + GH+G V ++
Sbjct: 146 LSCCRFLDD-NQIVTSSGDTTCALWDIETGQQT--------------TTFTGHTGDVMSL 190
Score = 25.6 bits (57), Expect = 4.2
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 64 QSLQGHSGKVRAIIWNEQYEKL--TSSDETGLIIVW 97
++L+GH K+ A+ W L S D +I+W
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGK--LIIW 82
Score = 24.8 bits (55), Expect = 7.6
Identities = 8/60 (13%), Positives = 17/60 (28%), Gaps = 14/60 (23%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+ +++ ++ + G DD V L GH +V +
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADR--------------AGVLAGHDNRVSCL 318
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics,
structural genomic consortium, SGC, apoptosis,
transcription; 1.95A {Homo sapiens}
Length = 357
Score = 31.9 bits (73), Expect = 0.028
Identities = 12/87 (13%), Positives = 24/87 (27%), Gaps = 17/87 (19%)
Query: 17 VNCLAWH---QNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKV 73
V L + + + +G V + T + G + S + H V
Sbjct: 212 VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFA---------SVSEKAHKSTV 262
Query: 74 RAIIWNEQYEKL---TSSDETGLIIVW 97
+ Q +L + +W
Sbjct: 263 WQVRHLPQNRELFLTAGGAGG--LHLW 287
Score = 31.2 bits (71), Expect = 0.043
Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 11/90 (12%)
Query: 17 VNCLAWH-QNQGWIAVGGDDGLLKVLKLDTGKE-----STGQVAAANVNLAMNQSLQGHS 70
V + QN+ G G L + K + + S G ++++ Q++ +
Sbjct: 262 VWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLST 321
Query: 71 GKVRAIIWNEQYEKL---TSSDETGLIIVW 97
+ ++ W+ L +S D+T + V
Sbjct: 322 QPISSLDWSPDKRGLCVCSSFDQT--VRVL 349
Score = 31.2 bits (71), Expect = 0.051
Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 13/62 (20%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
A Q ++A G G L + L+ + S++GH + AI
Sbjct: 71 GTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPV-------------YSVKGHKEIINAI 117
Query: 77 IW 78
Sbjct: 118 DG 119
Score = 26.2 bits (58), Expect = 2.3
Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 22/86 (25%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
A++Q + + G D+G +K+ L + V ++
Sbjct: 171 AFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL---------------RWETNIKNGVCSL 215
Query: 77 IWN---EQYEKL--TSSDETGLIIVW 97
++ KL TS + V+
Sbjct: 216 EFDRKDISMNKLVATSLEGK--FHVF 239
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone,
RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Length = 420
Score = 31.4 bits (72), Expect = 0.033
Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 18/83 (21%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+G +G +KVL + + + Q H ++ +
Sbjct: 100 TAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR--------------EIDQAHVSEITKL 145
Query: 77 IWNEQYEKL--TSSDETGLIIVW 97
+ E L +S D + +W
Sbjct: 146 KFFPSGEALISSSQDMQ--LKIW 166
Score = 30.3 bits (69), Expect = 0.11
Identities = 7/71 (9%), Positives = 25/71 (35%), Gaps = 13/71 (18%)
Query: 6 SKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQS 65
+++ + +K N L + ++ G G++ V + + +++ Q
Sbjct: 239 DRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTI-------------QL 285
Query: 66 LQGHSGKVRAI 76
+ ++
Sbjct: 286 PSKFTCSCNSL 296
Score = 29.5 bits (67), Expect = 0.18
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 13/61 (21%)
Query: 17 VNCLAWHQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
N L N +I G ++G+L L + + G+ L +
Sbjct: 293 CNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEF------------LINEGTPINN 340
Query: 76 I 76
+
Sbjct: 341 V 341
Score = 27.6 bits (62), Expect = 0.87
Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 14/63 (22%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+ L + + + D LK+ + G ++L GH V I
Sbjct: 142 ITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP--------------RTLIGHRATVTDI 187
Query: 77 IWN 79
Sbjct: 188 AII 190
Score = 26.8 bits (60), Expect = 1.6
Identities = 8/84 (9%), Positives = 24/84 (28%), Gaps = 9/84 (10%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+N + + G D +K+ + S + + L + V
Sbjct: 338 INNVYFAAG-ALFVSSGFDTSIKLDII-----SDPESERPAIEFETPTFLVSNDDAVSQF 391
Query: 77 IW---NEQYEKLTSSDETGLIIVW 97
+ +E ++ + ++
Sbjct: 392 CYVSDDESNGEVLEVGKNNFCALY 415
Score = 24.9 bits (55), Expect = 8.1
Identities = 3/62 (4%), Positives = 9/62 (14%), Gaps = 15/62 (24%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+ + + DG + S + +
Sbjct: 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---------------MLKRADYTAVD 103
Query: 77 IW 78
Sbjct: 104 TA 105
>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum, ER-golgi transport, membrane,
mRNA transport; 4.00A {Saccharomyces cerevisiae}
Length = 753
Score = 31.1 bits (70), Expect = 0.048
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 23/75 (30%)
Query: 17 VNCLAWH-------------QNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMN 63
VN +W + GG D L+K+ K ++ T +
Sbjct: 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD-AQTYVLE--------- 197
Query: 64 QSLQGHSGKVRAIIW 78
+L+GHS VR + W
Sbjct: 198 STLEGHSDWVRDVAW 212
Score = 30.3 bits (68), Expect = 0.094
Identities = 13/97 (13%), Positives = 27/97 (27%), Gaps = 15/97 (15%)
Query: 17 VNCLAWHQNQG---WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKV 73
V +AW ++A D + D + + + +
Sbjct: 207 VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLL---------KEEKFPDVL 257
Query: 74 RAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEWKR 110
W+ L S + +W K N + +W+
Sbjct: 258 WRASWSLSGNVLALSGGDNKVTLW---KENLEGKWEP 291
Score = 29.1 bits (65), Expect = 0.22
Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 14/65 (21%)
Query: 17 VNCLAW--HQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVR 74
VN + W H+ + V DG + V++ ++ + + H+ V
Sbjct: 102 VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII------------IDAHAIGVN 149
Query: 75 AIIWN 79
+ W
Sbjct: 150 SASWA 154
Score = 26.5 bits (58), Expect = 2.0
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 22/82 (26%)
Query: 17 VNCLAW-HQNQG-WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVR 74
V + W H G +A DG + + K + G+ + HS V
Sbjct: 56 VWRVDWAHPKFGTILASCSYDGKVLIWKEENGR------------WSQIAVHAVHSASVN 103
Query: 75 AIIWNEQYEKLTSSDETGLIIV 96
++ W + E G +++
Sbjct: 104 SVQW--------APHEYGPLLL 117
Score = 25.3 bits (55), Expect = 6.0
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 12/62 (19%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
++ +A D +K+ +++ T ++ +L GH G V +
Sbjct: 12 IHDAVLDYYGKRLATCSSDKTIKIFEVEGE---THKL---------IDTLTGHEGPVWRV 59
Query: 77 IW 78
W
Sbjct: 60 DW 61
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide
complex, E3 ubiquitin ligase, cell cycle, phospho
binding protein, phosphorylation; HET: SEP; 2.31A
{Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Length = 464
Score = 31.1 bits (71), Expect = 0.051
Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 13/92 (14%)
Query: 17 VNCL--AWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMN---------QS 65
V CL ++N +I G D L V KL + L +
Sbjct: 206 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265
Query: 66 LQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 97
L+GH VR + + S D T +IVW
Sbjct: 266 LRGHMASVRTVSGHGNIVVSGSYDNT--LIVW 295
Score = 29.9 bits (68), Expect = 0.12
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 14/50 (28%)
Query: 27 GWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
++ G DD +++V K L GH G V A+
Sbjct: 133 NYVITGADDKMIRVYDSINKKFL--------------LQLSGHDGGVWAL 168
Score = 28.8 bits (65), Expect = 0.35
Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 20/84 (23%)
Query: 16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
++ + + D +++ L+ G+ +LQGH+ V
Sbjct: 312 RIYSTIYDHERKRCISASMDTTIRIWDLENGELM--------------YTLQGHTALVGL 357
Query: 76 IIWNEQYEKLTS--SDETGLIIVW 97
+ ++++ L S +D + I W
Sbjct: 358 LRLSDKF--LVSAAADGS--IRGW 377
Score = 28.0 bits (63), Expect = 0.58
Identities = 6/82 (7%), Positives = 26/82 (31%), Gaps = 15/82 (18%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
++ + I V G + + L +GK ++ ++ + ++ ++
Sbjct: 394 SAITTFYVS-DNILVSGSENQFNIYNLRSGKL-------------VHANILKDADQIWSV 439
Query: 77 IWNEQYEKLTSSDETGLII-VW 97
+ + + + +
Sbjct: 440 NFKGKTLVAAVEKDGQSFLEIL 461
Score = 24.5 bits (54), Expect = 8.3
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 20/83 (24%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V ++ H N + G D L V + K L GH+ ++ +
Sbjct: 273 VRTVSGHGNI--VVSGSYDNTLIVWDVAQMKCL--------------YILSGHTDRIYST 316
Query: 77 IWNEQYEKLT--SSDETGLIIVW 97
I++ + ++ S D T I +W
Sbjct: 317 IYDHERKRCISASMDTT--IRIW 337
Score = 24.5 bits (54), Expect = 8.4
Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 21/85 (24%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVR-- 74
V L + + G D ++V + G + +GH+ VR
Sbjct: 165 VWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCT--------------HVFEGHNSTVRCL 209
Query: 75 AIIWNEQYEKLT--SSDETGLIIVW 97
I+ + + + S D T + VW
Sbjct: 210 DIVEYKNIKYIVTGSRDNT--LHVW 232
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_R
Length = 343
Score = 31.0 bits (71), Expect = 0.055
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+N +A++ W+AVG D G+ K+ L T + + + +G + + ++
Sbjct: 258 INQIAFNPKLQWVAVGTDQGV-KIFNLMTQSK-APVCTIEAEPITKAEGQKGKNPQCTSL 315
Query: 77 IW 78
W
Sbjct: 316 AW 317
Score = 29.1 bits (66), Expect = 0.24
Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 13/66 (19%)
Query: 17 VNCLAWHQNQG------WIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHS 70
V + +Q + G D + + KL +++ +++L GH+
Sbjct: 24 VTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIP-------HKALTGHN 76
Query: 71 GKVRAI 76
V +
Sbjct: 77 HFVSDL 82
Score = 27.9 bits (63), Expect = 0.52
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 17/82 (20%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
VN L+ N +IA GG D L + + Q + I
Sbjct: 216 VNHLSISPNGKYIATGGKDKKLLIWDILNLTYP--------------QREFDAGSTINQI 261
Query: 77 IWNEQYEKLTS-SDETGLIIVW 97
+N + + + +D+ + ++
Sbjct: 262 AFNPKLQWVAVGTDQG--VKIF 281
Score = 25.6 bits (57), Expect = 4.3
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 14/60 (23%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V+ LA Q + D L++ L TG + GH +V ++
Sbjct: 79 VSDLALSQENCFAISSSWDKTLRLWDLRTGTTY--------------KRFVGHQSEVYSV 124
Score = 25.2 bits (56), Expect = 5.5
Identities = 8/80 (10%), Positives = 22/80 (27%), Gaps = 12/80 (15%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V +A+ + I G + +K+ + + + + HS V +
Sbjct: 121 VYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSA------------EKENHSDWVSCV 168
Query: 77 IWNEQYEKLTSSDETGLIIV 96
++ +
Sbjct: 169 RYSPIMKSANKVQPFAPYFA 188
Score = 24.5 bits (54), Expect = 9.3
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 10/42 (23%)
Query: 64 QSLQGHSGKVRAIIWNEQYEKLT--------SSDETGLIIVW 97
L+GHS V +I+ ++ S D+T +++W
Sbjct: 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKT--VMIW 54
>3ow8_A WD repeat-containing protein 61; structural genomics consortium,
SGC, transcriptio; 2.30A {Homo sapiens}
Length = 321
Score = 30.9 bits (71), Expect = 0.062
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 16/64 (25%)
Query: 17 VNCLAW----HQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGK 72
+ +AW +N + G D L+KV K + SL+GH
Sbjct: 35 IWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ------------WSLEGHQLG 82
Query: 73 VRAI 76
V ++
Sbjct: 83 VVSV 86
Score = 30.5 bits (70), Expect = 0.086
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 18/83 (21%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+ L + + + DDG +K+ + + +L GH+ V +
Sbjct: 209 IRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA--------------GTLSGHASWVLNV 254
Query: 77 IWNEQYEKLT--SSDETGLIIVW 97
+ SSD++ + VW
Sbjct: 255 AFCPDDTHFVSSSSDKS--VKVW 275
Score = 29.7 bits (68), Expect = 0.12
Identities = 7/60 (11%), Positives = 16/60 (26%), Gaps = 14/60 (23%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V + A D +++ L+ GK+ +S+ +
Sbjct: 83 VVSVDISHTLPIAASSSLDAHIRLWDLENGKQI--------------KSIDAGPVDAWTL 128
Score = 28.2 bits (64), Expect = 0.50
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 14/60 (23%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
LA+ + ++A G G + + +++GK+ SL + +I
Sbjct: 125 AWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE--------------YSLDTRGKFILSI 170
Score = 27.8 bits (63), Expect = 0.73
Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 14/60 (23%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+ +A+ + ++A G DG++ + + TGK +L+GH+ +R++
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLL--------------HTLEGHAMPIRSL 212
Score = 25.1 bits (56), Expect = 6.0
Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 18/83 (21%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V +A+ + D +KV + T + H +V +
Sbjct: 251 VLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV--------------HTFFDHQDQVWGV 296
Query: 77 IWNEQYEKL--TSSDETGLIIVW 97
+N K+ D+ I ++
Sbjct: 297 KYNGNGSKIVSVGDDQE--IHIY 317
Score = 24.3 bits (54), Expect = 9.9
Identities = 5/50 (10%), Positives = 10/50 (20%), Gaps = 14/50 (28%)
Query: 29 IAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIW 78
+ L G + Q H + ++ W
Sbjct: 5 HHHSSRENLYFQGTNQYGIL--------------FKQEQAHDDAIWSVAW 40
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription
inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP:
b.69.4.1
Length = 393
Score = 28.7 bits (65), Expect = 0.28
Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 18/83 (21%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+ + + + ++A G +D L+++ ++ K LQGH + ++
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV--------------MILQGHEQDIYSL 171
Query: 77 IWNEQYEKLT--SSDETGLIIVW 97
+ +KL S D T + +W
Sbjct: 172 DYFPSGDKLVSGSGDRT--VRIW 192
Score = 28.7 bits (65), Expect = 0.35
Identities = 8/60 (13%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V + + ++ + G D +K+ L + + + GH V ++
Sbjct: 259 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCE--VTYIGHKDFVLSV 316
Score = 28.3 bits (64), Expect = 0.46
Identities = 16/89 (17%), Positives = 23/89 (25%), Gaps = 24/89 (26%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V +A QN +I G D + +G LQGH V ++
Sbjct: 313 VLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL--------------LMLQGHRNSVISV 358
Query: 77 IWNEQYEKLT--------SSDETGLIIVW 97
S D +W
Sbjct: 359 AVANGSSLGPEYNVFATGSGDCK--ARIW 385
Score = 26.4 bits (59), Expect = 2.3
Identities = 3/60 (5%), Positives = 10/60 (16%), Gaps = 7/60 (11%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+ + + L + + H+ V +
Sbjct: 18 IPPFLLDLDSQSVPDALKKQTNDYYILYNPA--LPREIDVEL-----HKSLDHTSVVCCV 70
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 28.6 bits (63), Expect = 0.36
Identities = 9/45 (20%), Positives = 17/45 (37%)
Query: 6 SKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKEST 50
+ N V + +N + V D + + L+TGK +
Sbjct: 370 KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV 414
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha
isoform; holoenzyme, PR55, WD repeat, hydrolase, iron,
manganese binding, methylation, phosphoprotein, protein
phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Length = 447
Score = 27.4 bits (60), Expect = 0.95
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 14 NTKVNCLAWHQNQGWIAVGGDDGL 37
N K+ AWH + IAV + L
Sbjct: 416 NKKILHTAWHPKENIIAVATTNNL 439
Score = 26.6 bits (58), Expect = 1.8
Identities = 5/42 (11%), Positives = 16/42 (38%)
Query: 18 NCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVN 59
W+ + + G + ++ +T ++ T + + N
Sbjct: 346 FECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNK 387
Score = 25.5 bits (55), Expect = 5.3
Identities = 14/94 (14%), Positives = 34/94 (36%), Gaps = 15/94 (15%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGH------- 69
++ + ++ + +A G G + + + + + + QS +
Sbjct: 31 ISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSL 90
Query: 70 --SGKVRAIIWNEQYEK----LTSSDETGLIIVW 97
K+ I W Q L+++D+T I +W
Sbjct: 91 EIEEKINKIRWLPQKNAAQFLLSTNDKT--IKLW 122
>1s1d_A Apyrase; adpase, five-blade beta propeller, calcium-binding
protein, nucleotide-binding motif, hydrolase; HET: GP2;
1.60A {Homo sapiens} SCOP: b.67.3.1 PDB: 1s18_A* 2h2n_A
2h2u_A
Length = 331
Score = 24.9 bits (54), Expect = 6.6
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 68 GHSGKVRAIIWNEQYEKLTSS 88
G+ G V W Y L ++
Sbjct: 182 GYKGSVDHENWVSNYNALRAA 202
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.413
Gapped
Lambda K H
0.267 0.0860 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,665,831
Number of extensions: 81541
Number of successful extensions: 622
Number of sequences better than 10.0: 1
Number of HSP's gapped: 478
Number of HSP's successfully gapped: 303
Length of query: 110
Length of database: 6,701,793
Length adjustment: 74
Effective length of query: 36
Effective length of database: 4,635,639
Effective search space: 166883004
Effective search space used: 166883004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.2 bits)