RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11100
(110 letters)
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 49.9 bits (117), Expect = 6e-09
Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 12/92 (13%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
++C AW++++ IA+ ++ + + + K L+ H+G+V +
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNK------------WVQVHELKEHNGQVTGV 57
Query: 77 IWNEQYEKLTSSDETGLIIVWMLYKCNDDDEW 108
W ++ + VW L
Sbjct: 58 DWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTL 89
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 44.7 bits (104), Expect = 3e-07
Identities = 9/86 (10%), Positives = 24/86 (27%), Gaps = 14/86 (16%)
Query: 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSG 71
+ +++ ++ + G DD V + L GH
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA--------------GVLAGHDN 313
Query: 72 KVRAIIWNEQYEKLTSSDETGLIIVW 97
+V + + + + + +W
Sbjct: 314 RVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 32.0 bits (71), Expect = 0.009
Identities = 10/95 (10%), Positives = 23/95 (24%), Gaps = 14/95 (14%)
Query: 16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRA 75
K+ + W + + DG L + T ++ S V
Sbjct: 57 KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN--------------KVHAIPLRSSWVMT 102
Query: 76 IIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEWKR 110
+ + + ++ L + R
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSR 137
Score = 29.3 bits (64), Expect = 0.083
Identities = 13/57 (22%), Positives = 26/57 (45%)
Query: 47 KESTGQVAAANVNLAMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVWMLYKCN 103
+ + + + ++L+GH K+ A+ W L S+ + G +I+W Y N
Sbjct: 32 QITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN 88
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 44.7 bits (104), Expect = 4e-07
Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 14/81 (17%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V + +H +I DD L+V + ++L H V ++
Sbjct: 250 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM--------------KTLNAHEHFVTSL 295
Query: 77 IWNEQYEKLTSSDETGLIIVW 97
+++ + + + VW
Sbjct: 296 DFHKTAPYVVTGSVDQTVKVW 316
Score = 37.4 bits (85), Expect = 1e-04
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 14/66 (21%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V + +H + +D +KV +TG ++L+GH+ V+ I
Sbjct: 20 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFE--------------RTLKGHTDSVQDI 65
Query: 77 IWNEQY 82
++
Sbjct: 66 SFDHSG 71
Score = 34.3 bits (77), Expect = 0.001
Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 14/96 (14%)
Query: 2 FIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLA 61
+ S +I T + ++ G D +K+ + TG
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL------------ 240
Query: 62 MNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 97
+L GH VR ++++ + + S + + VW
Sbjct: 241 --MTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 274
Score = 32.0 bits (71), Expect = 0.010
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 64 QSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 97
+L GH V +I++ + + S+ E I VW
Sbjct: 11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVW 44
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 40.9 bits (94), Expect = 7e-06
Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 20/91 (21%)
Query: 13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGK 72
+ V +A QN +I G D + +G LQGH
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP--------------LLMLQGHRNS 352
Query: 73 VRAI------IWNEQYEKLTSSDETGLIIVW 97
V ++ +Y + +W
Sbjct: 353 VISVAVANGSSLGPEYNVFATGSGDCKARIW 383
Score = 38.2 bits (87), Expect = 6e-05
Identities = 11/81 (13%), Positives = 28/81 (34%), Gaps = 2/81 (2%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V + + ++ + G D +K+ L + + + GH V ++
Sbjct: 257 VYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT--CEVTYIGHKDFVLSV 314
Query: 77 IWNEQYEKLTSSDETGLIIVW 97
+ E + S + ++ W
Sbjct: 315 ATTQNDEYILSGSKDRGVLFW 335
Score = 32.5 bits (72), Expect = 0.007
Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 5/96 (5%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKE----STGQVAAANVNLAMNQSLQGHSGK 72
V C+ + + ++A G + +V ++ G S A + S
Sbjct: 65 VCCVKFSNDGEYLATGCNKT-TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 123
Query: 73 VRAIIWNEQYEKLTSSDETGLIIVWMLYKCNDDDEW 108
+R++ ++ + L + E LI +W +
Sbjct: 124 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL 159
Score = 26.3 bits (56), Expect = 0.81
Identities = 5/27 (18%), Positives = 8/27 (29%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKL 43
N + A G D ++ K
Sbjct: 359 ANGSSLGPEYNVFATGSGDCKARIWKY 385
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 37.1 bits (84), Expect = 1e-04
Identities = 10/80 (12%), Positives = 18/80 (22%), Gaps = 15/80 (18%)
Query: 18 NCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAII 77
L + W G D LL + G S V +
Sbjct: 269 LSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS---------------IFQSKESSSVLSCD 313
Query: 78 WNEQYEKLTSSDETGLIIVW 97
+ + + + V+
Sbjct: 314 ISVDDKYIVTGSGDKKATVY 333
Score = 33.2 bits (74), Expect = 0.003
Identities = 11/92 (11%), Positives = 21/92 (22%), Gaps = 10/92 (10%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V + + GG G +KV + + +R+
Sbjct: 54 VCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQ---------LDCLNRDNYIRSC 103
Query: 77 IWNEQYEKLTSSDETGLIIVWMLYKCNDDDEW 108
L E + +W L +
Sbjct: 104 KLLPDGCTLIVGGEASTLSIWDLAAPTPRIKA 135
Score = 30.5 bits (67), Expect = 0.032
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKL 43
++ V + +I G D V ++
Sbjct: 303 SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 36.4 bits (82), Expect = 3e-04
Identities = 9/88 (10%), Positives = 34/88 (38%), Gaps = 14/88 (15%)
Query: 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSG 71
++T ++ + I V G + + L +GK ++ ++ +
Sbjct: 279 YHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKL-------------VHANILKDAD 325
Query: 72 KVRAIIWNEQYEKLTSSDETGLIIVWML 99
++ ++ + + + + ++ G + +L
Sbjct: 326 QIWSVNFKGKT-LVAAVEKDGQSFLEIL 352
Score = 34.1 bits (76), Expect = 0.002
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 16/92 (17%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+ CL + N ++ G DD +++V K L GH G V A+
Sbjct: 16 ITCLQFEDN--YVITGADDKMIRVYDSINKKFL--------------LQLSGHDGGVWAL 59
Query: 77 IWNEQYEKLTSSDETGLIIVWMLYKCNDDDEW 108
+ ++ S + + + + C
Sbjct: 60 KYAHGGILVSGSTDRTVRVWDIKKGCCTHVFE 91
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 35.2 bits (79), Expect = 6e-04
Identities = 6/69 (8%), Positives = 21/69 (30%), Gaps = 11/69 (15%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
++ + ++ + + DG L V K D ++ + + +
Sbjct: 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQ-----------SLRYKHPLLCC 62
Query: 77 IWNEQYEKL 85
+ + +
Sbjct: 63 NFIDNTDLQ 71
Score = 30.2 bits (66), Expect = 0.035
Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 15/86 (17%)
Query: 18 NCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAII 77
N + + ++ G DG++ L T K+ + + + V I
Sbjct: 255 NSIEFSPRHKFLYTAGSDGIISCWNLQTRKK-------------IKNFAKFNEDSVVKIA 301
Query: 78 WNEQYEKLTSSDETGLIIVWMLYKCN 103
++ L +SD+T
Sbjct: 302 CSDNILCLATSDDT--FKTNAAIDQT 325
Score = 27.1 bits (58), Expect = 0.45
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKES-TGQVAAANVNLAMNQSLQGHSGKVRA 75
+ + Q A DG + V D + A +N + V +
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256
Query: 76 IIWNEQYEKLTSSDETGLIIVW 97
I ++ +++ L ++ G+I W
Sbjct: 257 IEFSPRHKFLYTAGSDGIISCW 278
Score = 25.6 bits (54), Expect = 1.8
Identities = 6/34 (17%), Positives = 10/34 (29%)
Query: 64 QSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 97
Q Q + I L + G + V+
Sbjct: 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVY 38
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 34.8 bits (78), Expect = 0.001
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 7 KKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSL 66
+ + + + I G DG +KV L + + ++L
Sbjct: 209 ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCL-----RTL 263
Query: 67 QGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 97
HSG+V + ++E + SS I++W
Sbjct: 264 VEHSGRVFRLQFDEFQ--IVSSSHDDTILIW 292
Score = 32.1 bits (71), Expect = 0.008
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 16/66 (24%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V CL + I G D +K+ +T + + L GH+G V +
Sbjct: 18 VYCLQYDDQ--KIVSGLRDNTIKIWDKNTLECK--------------RILTGHTGSVLCL 61
Query: 77 IWNEQY 82
++E+
Sbjct: 62 QYDERV 67
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 35.0 bits (78), Expect = 0.001
Identities = 11/92 (11%), Positives = 25/92 (27%), Gaps = 13/92 (14%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+ L+ + + +G + + TG H+ + I
Sbjct: 15 ITALSSSADGKTLFSADAEGHINSWDISTGIS-------------NRVFPDVHATMITGI 61
Query: 77 IWNEQYEKLTSSDETGLIIVWMLYKCNDDDEW 108
+ + T S + L +V D +
Sbjct: 62 KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKA 93
Score = 31.1 bits (68), Expect = 0.021
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 61 AMNQSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 97
+++Q GH+ + A+ + + L S+D G I W
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSW 39
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 29.8 bits (65), Expect = 0.048
Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 16/92 (17%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+ CL + N I G DD LKV TGK ++L GH+G V +
Sbjct: 20 ITCLQFCGN--RIVSGSDDNTLKVWSAVTGKCL--------------RTLVGHTGGVWSS 63
Query: 77 IWNEQYEKLTSSDETGLIIVWMLYKCNDDDEW 108
+ S+D T + +C
Sbjct: 64 QMRDNIIISGSTDRTLKVWNAETGECIHTLYG 95
Score = 25.9 bits (55), Expect = 1.3
Identities = 6/36 (16%), Positives = 12/36 (33%)
Query: 5 LSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKV 40
L + + V + + AVG +G +
Sbjct: 296 LVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 331
Score = 24.4 bits (51), Expect = 3.8
Identities = 13/75 (17%), Positives = 22/75 (29%), Gaps = 9/75 (12%)
Query: 18 NCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAII 77
N+ ++ DDG +K+ L TG+ + + G G V I
Sbjct: 262 AVTCLQFNKNFVITSSDDGTVKLWDLKTGEF---------IRNLVTLESGGSGGVVWRIR 312
Query: 78 WNEQYEKLTSSDETG 92
+ G
Sbjct: 313 ASNTKLVCAVGSRNG 327
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 29.4 bits (64), Expect = 0.079
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKE 48
+ L ++ + V DDG + L+ ++
Sbjct: 317 LTDLRLSADRKTVMVRKDDGKIYTFPLEKPED 348
Score = 26.0 bits (55), Expect = 1.0
Identities = 6/81 (7%), Positives = 20/81 (24%), Gaps = 18/81 (22%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
+ + + + G+L + T K + + +
Sbjct: 279 YSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK------------------VTEVKNNLTDL 320
Query: 77 IWNEQYEKLTSSDETGLIIVW 97
+ + + + G I +
Sbjct: 321 RLSADRKTVMVRKDDGKIYTF 341
Score = 24.1 bits (50), Expect = 4.6
Identities = 6/42 (14%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 9 IAIPNNTKVNCLAWHQNQGWIAVGGDDG--LLKVLKLDTGKE 48
+ +P ++ + + + G L + TGK
Sbjct: 37 LKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA 78
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 29.3 bits (64), Expect = 0.087
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKE 48
+ C+A+ + + +GG L V DT ++
Sbjct: 288 ANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 325
Score = 23.9 bits (50), Expect = 5.2
Identities = 4/28 (14%), Positives = 9/28 (32%)
Query: 20 LAWHQNQGWIAVGGDDGLLKVLKLDTGK 47
A ++ V L V+ + +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDT 29
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 29.0 bits (63), Expect = 0.093
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKE 48
+P + + + +GG G L +T ++
Sbjct: 276 VPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 29.2 bits (63), Expect = 0.093
Identities = 10/80 (12%), Positives = 23/80 (28%), Gaps = 14/80 (17%)
Query: 18 NCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAII 77
+ +A G D + + + + ++L H V ++
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKII-------------KALNAHKDGVNNLL 265
Query: 78 WNEQYEKLTSSDETGLIIVW 97
W ++S + I W
Sbjct: 266 WETPSTLVSSGAD-ACIKRW 284
Score = 26.8 bits (57), Expect = 0.55
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 64 QSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 97
+++ GH+ + A+ N L S G I+ W
Sbjct: 7 KTISGHNKGITALTVN----PLISGSYDGRIMEW 36
Score = 25.3 bits (53), Expect = 1.8
Identities = 7/24 (29%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKV 40
VN L W + G D +K
Sbjct: 261 VNNLLWETP-STLVSSGADACIKR 283
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 28.3 bits (61), Expect = 0.17
Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 19/83 (22%)
Query: 18 NCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSG---KVR 74
L W + IA D +K+ + T K +++ + +
Sbjct: 242 FGLTWSPDGTKIASASADKTIKIWNVATLKVE--------------KTIPVGTRIEDQQL 287
Query: 75 AIIWNEQYEKLTSSDETGLIIVW 97
IIW +Q L S G I
Sbjct: 288 GIIWTKQA--LVSISANGFINFV 308
Score = 24.9 bits (52), Expect = 2.8
Identities = 3/23 (13%), Positives = 7/23 (30%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLK 39
+ + A G G ++
Sbjct: 61 TTVAKTSPSGYYCASGDVHGNVR 83
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 28.3 bits (61), Expect = 0.17
Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 14/62 (22%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAI 76
V L+++ + + G DG L+ + T + +L H +
Sbjct: 292 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI--------------TTLNMHCDDIEIE 337
Query: 77 IW 78
Sbjct: 338 ED 339
Score = 24.8 bits (52), Expect = 2.7
Identities = 5/34 (14%), Positives = 12/34 (35%), Gaps = 2/34 (5%)
Query: 64 QSLQGHSGKVRAIIWNEQYEKLTSSDETGLIIVW 97
+ + H + ++ + S D + VW
Sbjct: 8 NAGKAHDADIFSVSACNSFTVSCSGDGY--LKVW 39
>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 381
Score = 26.8 bits (59), Expect = 0.62
Identities = 3/28 (10%), Positives = 7/28 (25%), Gaps = 1/28 (3%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLD 44
+ L ++ V +L
Sbjct: 39 LQNLDISNSKSLFVAASGSK-AVVGELQ 65
>d1s1da_ b.67.3.1 (A:) Soluble calcium-activated nucleotidase SCAN-1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 317
Score = 26.2 bits (58), Expect = 0.86
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 68 GHSGKVRAIIWNEQYEKLTSS 88
G+ G V W Y L ++
Sbjct: 168 GYKGSVDHENWVSNYNALRAA 188
>d1gcya1 b.71.1.1 (A:358-418) G4-amylase (1,4-alpha-D-glucan
maltotetrahydrolase) {Pseudomonas stutzeri [TaxId:
316]}
Length = 61
Score = 25.0 bits (54), Expect = 0.86
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Query: 40 VLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAIIW 78
V+ L++ + GQVA+ + + A+N S +G+VR +W
Sbjct: 27 VVALNSDLGNPGQVASGSFSEAVNAS----NGQVR--VW 59
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 25.1 bits (53), Expect = 1.9
Identities = 6/40 (15%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 11 IPNNTKVNCLAWHQ--NQGWIAVGGDDGLLKVLKLDTGKE 48
+++ + Q A+ D L + ++G+E
Sbjct: 296 FEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE 335
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 24.9 bits (52), Expect = 2.7
Identities = 9/83 (10%), Positives = 19/83 (22%), Gaps = 17/83 (20%)
Query: 18 NCLAWHQNQGWIAVGGDDGLLKVLKLDTGKESTGQVAAANVNLAMNQSLQGHSGKVRAII 77
+ A G D ++V + T K Q ++
Sbjct: 255 IFALSWLDSQKFATVGADATIRVWDVTTSKCV--------------QKWTLDKQQLGNQQ 300
Query: 78 WNEQY---EKLTSSDETGLIIVW 97
++ S G + +
Sbjct: 301 VGVVATGNGRIISLSLDGTLNFY 323
>d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 90
Score = 23.1 bits (50), Expect = 5.0
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 5/53 (9%)
Query: 43 LDTGKESTGQVAAANVNLAMNQSLQGHSG----KVRAII-WNEQYEKLTSSDE 90
LD E +VN A L SG + I+ + + DE
Sbjct: 14 LDAVVEDCVNAVGVDVNTASAALLARISGLNSTLAQNIVAHRDANGAFRTRDE 66
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 23.3 bits (48), Expect = 9.7
Identities = 6/39 (15%), Positives = 11/39 (28%), Gaps = 1/39 (2%)
Query: 11 IPNNTKVNCLAWHQNQGWIAV-GGDDGLLKVLKLDTGKE 48
IP +A + + V + V+ T
Sbjct: 240 IPVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTI 278
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.413
Gapped
Lambda K H
0.267 0.0692 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 413,023
Number of extensions: 14892
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 53
Length of query: 110
Length of database: 2,407,596
Length adjustment: 69
Effective length of query: 41
Effective length of database: 1,460,226
Effective search space: 59869266
Effective search space used: 59869266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.0 bits)