BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11101
(157 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RGN|B Chain B, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|E Chain E, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 354
Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 81/155 (52%), Gaps = 3/155 (1%)
Query: 1 MMDVARLKGFDGKITAQGKLLMRGPLYCTETXXXXXXXXXXRGKELQVFLFEQSMIFSEA 60
MM + RL+GF+GK+TAQGKLL + + TE RG+E +VFLFEQ +IFSEA
Sbjct: 188 MMTLGRLRGFEGKLTAQGKLLGQDTFWVTEPEAGGLLSS--RGRERRVFLFEQIIIFSEA 245
Query: 61 VGKKTQFSVNKMSVEEKVPEELTPAXXXXXXXXXXAYFLLKSIDPKKPALTFLCQAPTEE 120
+G + V K +++ F L S P+ ++ QA
Sbjct: 246 LGGGVRGGTQPGYVY-KNSIKVSCLGLEGNLQGDPCRFALTSRGPEGGIQRYVLQAADPA 304
Query: 121 SRSEWLRCLGLILQTQRDFLKAIQSPIAYQKELSK 155
W++ + IL++QRDFL A+QSPI YQ+ S+
Sbjct: 305 ISQAWIKHVAQILESQRDFLNALQSPIEYQRRESQ 339
>pdb|1NTY|A Chain A, Crystal Structure Of The First DhPH DOMAIN OF TRIO TO 1.7
A
Length = 311
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 2 MDVARLKGFDGKITAQGKLLMRGPLYCTETXXXXXXXXXXRGKELQVFLFEQSMIFSEAV 61
M ++ L+GFD I +QG+L+++ + +G+E +FLFE S++FS+ V
Sbjct: 185 MHLSMLEGFDENIESQGELILQESFQVWDPKTLIR-----KGRERHLFLFEMSLVFSKEV 239
>pdb|2NZ8|B Chain B, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
Length = 313
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 2 MDVARLKGFDGKITAQGKLLMRGPLYCTETXXXXXXXXXXRGKELQVFLFEQSMIFSEAV 61
M ++ L+GFD I +QG+L+++ + +G+E +FLFE S++FS+ V
Sbjct: 187 MHLSMLEGFDENIESQGELILQESFQVWDPKTLIR-----KGRERHLFLFEMSLVFSKEV 241
>pdb|1RJ2|A Chain A, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|G Chain G, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
pdb|1RJ2|J Chain J, Crystal Structure Of The DhPH FRAGMENT OF DBS WITHOUT
Bound Gtpase
Length = 353
Score = 29.6 bits (65), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 25/148 (16%)
Query: 2 MDVARLKGFDGKITAQGKLLMRG--PLYCTETXXXXXXXXXXRGKELQ--VFLFEQSMIF 57
M + + G+DG + GKLLM+G ++ R K +Q +FL E++++F
Sbjct: 192 MHLIAITGYDGNLGDLGKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLF 251
Query: 58 SEAVGKKTQFSVNKMSVEEKVPEELTPAXXXXXXXXXXAYFLLKSI--DPKKPAL----- 110
K E E P+ A + +++ D KK +
Sbjct: 252 C------------KKREENGEGYEKAPSYSYKQSLNMTAVGITENVKGDTKKFEIWYNAR 299
Query: 111 --TFLCQAPTEESRSEWLRCLGLILQTQ 136
++ QAPT E ++ W+ + +L +Q
Sbjct: 300 EEVYIIQAPTPEIKAAWVNEIRKVLTSQ 327
>pdb|1LB1|A Chain A, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|C Chain C, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|E Chain E, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|G Chain G, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 353
Score = 29.6 bits (65), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 25/148 (16%)
Query: 2 MDVARLKGFDGKITAQGKLLMRG--PLYCTETXXXXXXXXXXRGKELQ--VFLFEQSMIF 57
M + + G+DG + GKLLM+G ++ R K +Q +FL E++++F
Sbjct: 192 MHLIAITGYDGNLGDLGKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLF 251
Query: 58 SEAVGKKTQFSVNKMSVEEKVPEELTPAXXXXXXXXXXAYFLLKSI--DPKKPAL----- 110
K E E P+ A + +++ D KK +
Sbjct: 252 C------------KKREENGEGYEKAPSYSYKQSLNMTAVGITENVKGDTKKFEIWYNAR 299
Query: 111 --TFLCQAPTEESRSEWLRCLGLILQTQ 136
++ QAPT E ++ W+ + +L +Q
Sbjct: 300 EEVYIIQAPTPEIKAAWVNEIRKVLTSQ 327
>pdb|1KZG|A Chain A, Dbscdc42(Y889f)
pdb|1KZG|C Chain C, Dbscdc42(Y889f)
Length = 353
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 60/148 (40%), Gaps = 25/148 (16%)
Query: 2 MDVARLKGFDGKITAQGKLLMRG--PLYCTETXXXXXXXXXXRGKELQ--VFLFEQSMIF 57
M + + G+DG + GKLLM+G ++ R K +Q +FL E++++F
Sbjct: 192 MHLIAITGYDGNLGDLGKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLF 251
Query: 58 SEAVGKKTQFSVNKMSVEEKVPEELTPAXXXXXXXXXXAYFLLKSI--DPKKPAL----- 110
K E E P+ A + +++ D KK +
Sbjct: 252 C------------KKREENGEGYEKAPSFSYKQSLNMTAVGITENVKGDTKKFEIWYNAR 299
Query: 111 --TFLCQAPTEESRSEWLRCLGLILQTQ 136
++ QAPT E ++ W+ + +L +Q
Sbjct: 300 EEVYIIQAPTPEIKAAWVNEIRKVLTSQ 327
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 27.3 bits (59), Expect = 3.6, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 51 FEQSMIFSEAVGKKTQFSVNKMSVEEKVPE 80
F++ ++ + GKKT FS+ V++ +PE
Sbjct: 338 FKKEILLDRSAGKKTAFSIKLDYVKKPIPE 367
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,540,689
Number of Sequences: 62578
Number of extensions: 100544
Number of successful extensions: 177
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 166
Number of HSP's gapped (non-prelim): 7
length of query: 157
length of database: 14,973,337
effective HSP length: 91
effective length of query: 66
effective length of database: 9,278,739
effective search space: 612396774
effective search space used: 612396774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)