BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11101
(157 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q86VW2|ARHGP_HUMAN Rho guanine nucleotide exchange factor 25 OS=Homo sapiens
GN=ARHGEF25 PE=1 SV=2
Length = 580
Score = 96.3 bits (238), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 87/155 (56%), Gaps = 3/155 (1%)
Query: 1 MMDVARLKGFDGKITAQGKLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIFSEA 60
MM + RL+GF+GK+TAQGKLL + + TE SS RG+E +VFLFEQ +IFSEA
Sbjct: 336 MMTLGRLRGFEGKLTAQGKLLGQDTFWVTEPEAGGLLSS--RGRERRVFLFEQIIIFSEA 393
Query: 61 VGKKTQFSVNKMSVEEKVPEELTPAGSGGSRGGLSAYFLLKSIDPKKPALTFLCQAPTEE 120
+G + V K +++ G G+ G F L S P+ ++ QA
Sbjct: 394 LGGGVRGGTQPGYVY-KNSIKVSCLGLEGNLQGDPCRFALTSRGPEGGIQRYVLQAADPA 452
Query: 121 SRSEWLRCLGLILQTQRDFLKAIQSPIAYQKELSK 155
W++ + IL++QRDFL A+QSPI YQ+ S+
Sbjct: 453 ISQAWIKHVAQILESQRDFLNALQSPIEYQRRESQ 487
>sp|Q9CWR0|ARHGP_MOUSE Rho guanine nucleotide exchange factor 25 OS=Mus musculus
GN=Arhgef25 PE=1 SV=1
Length = 618
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 86/155 (55%), Gaps = 3/155 (1%)
Query: 1 MMDVARLKGFDGKITAQGKLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIFSEA 60
MM + RL+GF+GK+TAQGKLL + TE SS RG+E +VFLFEQ +IFSEA
Sbjct: 375 MMSLGRLRGFEGKLTAQGKLLGQDTFLVTEPEAGGLLSS--RGRERRVFLFEQIIIFSEA 432
Query: 61 VGKKTQFSVNKMSVEEKVPEELTPAGSGGSRGGLSAYFLLKSIDPKKPALTFLCQAPTEE 120
+G + V K +++ G G+ G F L S P+ ++ QA
Sbjct: 433 LGGGGRGGAQPGYVY-KNSIKVSCLGLEGNLQGNPCRFALTSRGPEGGIQRYVLQASDPA 491
Query: 121 SRSEWLRCLGLILQTQRDFLKAIQSPIAYQKELSK 155
W++ + IL++QRDFL A+QSPI YQ+ S+
Sbjct: 492 VSQAWIKQVAQILESQRDFLNALQSPIEYQRRESQ 526
>sp|P97924|KALRN_RAT Kalirin OS=Rattus norvegicus GN=Kalrn PE=1 SV=3
Length = 2959
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 83/161 (51%), Gaps = 31/161 (19%)
Query: 1 MMDVARLKGFDGKITAQGKLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIFSEA 60
MM++ RL+GF+G +TAQGKLL + Y E + SR KE +VFLFEQ +IFSE
Sbjct: 2076 MMNLGRLQGFEGTLTAQGKLLQQDTFYVIELD----AGMQSRTKERRVFLFEQIVIFSEL 2131
Query: 61 VGKKTQFSVNKMSVEEKVPEELTPAGSGGSRGGLSAYFLLK---SIDPKKPALT------ 111
+ K + LTP G R Y +L+ DP K AL
Sbjct: 2132 LRKGS----------------LTP-GYMFKRSIKMNYLVLEEDVDDDPCKFALMNRETSE 2174
Query: 112 -FLCQAPTEESRSEWLRCLGLILQTQRDFLKAIQSPIAYQK 151
+ QA + + W++ + +L+TQRDFL A+QSPI YQ+
Sbjct: 2175 RVILQAANSDIQQAWVQDINQVLETQRDFLNALQSPIEYQR 2215
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 20/160 (12%)
Query: 2 MDVARLKGFDGKITAQGKLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIFSEAV 61
M V+ L+GFD + QG+L+++ V S +G+E +FLFE S++FS+ +
Sbjct: 1430 MHVSMLEGFDENLDVQGELILQDAF-----QVWDPKSLIRKGRERHLFLFEISLVFSKEI 1484
Query: 62 ----GKKTQFSVNKMSVEE-KVPEELTPAGSGGSRGGLSAYFLLKSIDPKKPALTFLCQA 116
G NK+ E V E + G + L P T L +A
Sbjct: 1485 KDSSGHTKYVYKNKLLTSELGVTEHV--------EGDPCKFALWSGRTPSSDNKTVL-KA 1535
Query: 117 PTEESRSEWLRCLGLILQTQRDFLK-AIQSPIAYQKELSK 155
E++ EW++ + ++Q + LK A++ PI K +K
Sbjct: 1536 SNIETKQEWIKNIREVIQERIIHLKGALKEPIQLPKTPAK 1575
>sp|A2CG49|KALRN_MOUSE Kalirin OS=Mus musculus GN=Kalrn PE=1 SV=1
Length = 2964
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 83/161 (51%), Gaps = 31/161 (19%)
Query: 1 MMDVARLKGFDGKITAQGKLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIFSEA 60
MM++ RL+GF+G +TAQGKLL + Y E + SR KE +VFLFEQ +IFSE
Sbjct: 2075 MMNLGRLQGFEGTLTAQGKLLQQDTFYVIELD----AGMQSRTKERRVFLFEQIVIFSEL 2130
Query: 61 VGKKTQFSVNKMSVEEKVPEELTPAGSGGSRGGLSAYFLLKSI---DPKKPALT------ 111
+ K + LTP G R Y +L+ DP K AL
Sbjct: 2131 LRKGS----------------LTP-GYMFKRSIKMNYLVLEDNVDGDPCKFALMNRETSE 2173
Query: 112 -FLCQAPTEESRSEWLRCLGLILQTQRDFLKAIQSPIAYQK 151
+ QA + + W++ + +L+TQRDFL A+QSPI YQ+
Sbjct: 2174 RVILQAANSDIQQAWVQDINQVLETQRDFLNALQSPIEYQR 2214
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 20/160 (12%)
Query: 2 MDVARLKGFDGKITAQGKLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIFSEAV 61
M V+ L+GFD + QG+L+++ V S +G+E +FLFE S++FS+ +
Sbjct: 1430 MHVSMLEGFDENLDVQGELILQDAF-----QVWDPKSLIRKGRERHLFLFEISLVFSKEI 1484
Query: 62 ----GKKTQFSVNKMSVEE-KVPEELTPAGSGGSRGGLSAYFLLKSIDPKKPALTFLCQA 116
G NK+ E V E + G + L P T L +A
Sbjct: 1485 KDSSGHTKYVYKNKLLTSELGVTEHV--------EGDPCKFALWSGRTPSSDNKTVL-KA 1535
Query: 117 PTEESRSEWLRCLGLILQTQRDFLK-AIQSPIAYQKELSK 155
E++ EW++ + ++Q + LK A++ PI K +K
Sbjct: 1536 SNIETKQEWIKNIREVIQERIIHLKGALKEPIQLPKTPAK 1575
>sp|O75962|TRIO_HUMAN Triple functional domain protein OS=Homo sapiens GN=TRIO PE=1 SV=2
Length = 3097
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 78/162 (48%), Gaps = 29/162 (17%)
Query: 1 MMDVARLKGFDGKITAQGKLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIFSEA 60
MM+V RL+GFDGKI AQGKLL++ T+ R +E ++FLFEQ +IFSE
Sbjct: 2145 MMNVGRLQGFDGKIVAQGKLLLQDTFLVTDQDAGLL----PRCRERRIFLFEQIVIFSEP 2200
Query: 61 VGKKTQFS-----------VNKMSVEEKVPEELTPAGSGGSRGGLSAYFLLKSIDPKKPA 109
+ KK FS V+ + +EE V + G + F+L S P
Sbjct: 2201 LDKKKGFSMPGFLFKNSIKVSCLCLEENVENDPCKFALTSRTGDVVETFILHSSSPS--- 2257
Query: 110 LTFLCQAPTEESRSEWLRCLGLILQTQRDFLKAIQSPIAYQK 151
R W+ + IL+ QR+FL A+ SPI YQ+
Sbjct: 2258 -----------VRQTWIHEINQILENQRNFLNALTSPIEYQR 2288
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 72/160 (45%), Gaps = 28/160 (17%)
Query: 2 MDVARLKGFDGKITAQGKLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIFSEAV 61
M ++ L+GFD I +QG+L+++ V + +G+E +FLFE S++FS+ V
Sbjct: 1468 MHLSMLEGFDENIESQGELILQESF-----QVWDPKTLIRKGRERHLFLFEMSLVFSKEV 1522
Query: 62 GK---------KTQFSVNKMSVEEKVPEELTPAGSGGSRGGLSAYFLLKSIDPKKPALTF 112
K++ +++ V E V G + L P
Sbjct: 1523 KDSSGRSKYLYKSKLFTSELGVTEHV------------EGDPCKFALWVGRTPTSDNKIV 1570
Query: 113 LCQAPTEESRSEWLRCLGLILQTQRDFLK-AIQSPIAYQK 151
L +A + E++ +W++ + ++Q + LK A++ PI K
Sbjct: 1571 L-KASSIENKQDWIKHIREVIQERTIHLKGALKEPIHIPK 1609
>sp|O60229|KALRN_HUMAN Kalirin OS=Homo sapiens GN=KALRN PE=1 SV=2
Length = 2985
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 83/161 (51%), Gaps = 31/161 (19%)
Query: 1 MMDVARLKGFDGKITAQGKLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIFSEA 60
MM++ RL+GF+G +TAQGKLL + Y E + SR KE +VFLFEQ +IFSE
Sbjct: 2103 MMNLGRLQGFEGTLTAQGKLLQQDTFYVIELD----AGMQSRTKERRVFLFEQIVIFSEL 2158
Query: 61 VGKKTQFSVNKMSVEEKVPEELTPAGSGGSRGGLSAYFLLK---SIDPKKPALT------ 111
+ K + LTP G R Y +L+ DP K AL
Sbjct: 2159 LRKGS----------------LTP-GYMFKRSIKMNYLVLEENVDNDPCKFALMNRETSE 2201
Query: 112 -FLCQAPTEESRSEWLRCLGLILQTQRDFLKAIQSPIAYQK 151
+ QA + + W++ + +L+TQRDFL A+QSPI YQ+
Sbjct: 2202 RVVLQAANADIQQAWVQDINQVLETQRDFLNALQSPIEYQR 2242
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 20/160 (12%)
Query: 2 MDVARLKGFDGKITAQGKLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIFSEAV 61
M V+ L+GFD + QG+L+++ V S +G+E +FLFE S++FS+ +
Sbjct: 1457 MHVSMLEGFDENLDVQGELILQDAF-----QVWDPKSLIRKGRERHLFLFEISLVFSKEI 1511
Query: 62 ----GKKTQFSVNKMSVEE-KVPEELTPAGSGGSRGGLSAYFLLKSIDPKKPALTFLCQA 116
G NK+ E V E + G + L P T L +A
Sbjct: 1512 KDSSGHTKYVYKNKLLTSELGVTEHV--------EGDPCKFALWSGRTPSSDNKTVL-KA 1562
Query: 117 PTEESRSEWLRCLGLILQTQRDFLK-AIQSPIAYQKELSK 155
E++ EW++ + ++Q + LK A++ P+ K +K
Sbjct: 1563 SNIETKQEWIKNIREVIQERIIHLKGALKEPLQLPKTPAK 1602
>sp|Q0KL02|TRIO_MOUSE Triple functional domain protein OS=Mus musculus GN=Trio PE=1 SV=3
Length = 3102
Score = 86.3 bits (212), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 77/162 (47%), Gaps = 29/162 (17%)
Query: 1 MMDVARLKGFDGKITAQGKLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIFSEA 60
MM+V RL+GFDGKI AQGKLL++ T+ R KE +VFLFEQ +IFSE
Sbjct: 2145 MMNVGRLQGFDGKIVAQGKLLLQDTFLVTDQDAGLL----PRCKERRVFLFEQIVIFSEP 2200
Query: 61 VGKKTQFS-----------VNKMSVEEKVPEELTPAGSGGSRGGLSAYFLLKSIDPKKPA 109
+ KK FS V+ + +EE V + G F+L S P
Sbjct: 2201 LDKKKGFSMPGFLFKNSIKVSCLCLEENVESDPCKFALTSRTGDAVETFVLHSSSPS--- 2257
Query: 110 LTFLCQAPTEESRSEWLRCLGLILQTQRDFLKAIQSPIAYQK 151
R W+ + IL+ QR+FL A+ SPI YQ+
Sbjct: 2258 -----------VRQTWIHEINQILENQRNFLNALTSPIEYQR 2288
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 28/160 (17%)
Query: 2 MDVARLKGFDGKITAQGKLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIFSEAV 61
M ++ L+GFD I +QG+L+++ V + +G+E +FLFE S++FS+ V
Sbjct: 1468 MHLSMLEGFDENIESQGELILQESF-----QVWDPKTLIRKGRERHLFLFEMSLVFSKEV 1522
Query: 62 GK---------KTQFSVNKMSVEEKVPEELTPAGSGGSRGGLSAYFLLKSIDPKKPALTF 112
K++ +++ V E V G + L P
Sbjct: 1523 KDSSGRSKYLYKSKLFTSELGVTEHV------------EGDPCKFALWVGRTPTSDNKIV 1570
Query: 113 LCQAPTEESRSEWLRCLGLILQTQRDFLK-AIQSPIAYQK 151
L +A + E++ +W++ + ++Q + L+ A++ PI K
Sbjct: 1571 L-KASSIENKQDWIKHIREVIQERTVHLRGALKEPIHIPK 1609
>sp|Q1LUA6|TRIO_DANRE Triple functional domain protein OS=Danio rerio GN=trio PE=3 SV=1
Length = 3028
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 78/151 (51%), Gaps = 6/151 (3%)
Query: 1 MMDVARLKGFDGKITAQGKLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIFSEA 60
MM+V RL+GFDGKI AQG+LL++ E +R KE +VFLFEQ +IFSE
Sbjct: 2096 MMNVGRLQGFDGKIVAQGRLLLQDTFMVAE----PEGGLLNRMKERRVFLFEQIVIFSEP 2151
Query: 61 VGKKTQFSVNKMSVEEKVPEELTPAGSGGSRGGLSAYFLLKSIDPKKPALTFLCQAPTEE 120
+ KK FS+ + + ++ G S G F L S F+ +
Sbjct: 2152 LDKKRGFSMPGYLYKYSI--KVNCLGLEDSVDGDPCKFALTSRTSNSSKDAFILHSSHPG 2209
Query: 121 SRSEWLRCLGLILQTQRDFLKAIQSPIAYQK 151
R W+ + IL++QR+FL A+ SPI YQ+
Sbjct: 2210 VRQVWMLQISQILESQRNFLNALTSPIDYQR 2240
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 28/160 (17%)
Query: 2 MDVARLKGFDGKITAQGKLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIFSEAV 61
M ++ L+GFD I +QG+L+++ V + +G+E +FLFE S+IFS+ V
Sbjct: 1419 MHLSMLEGFDENIESQGELILQEAF-----QVWDPKTLIRKGRERHLFLFEMSLIFSKEV 1473
Query: 62 GK---------KTQFSVNKMSVEEKVPEELTPAGSGGSRGGLSAYFLLKSIDPKKPALTF 112
K++ +++ V E V G + L P
Sbjct: 1474 KDSNGRSKYIYKSKLFTSELGVTEHV------------EGDPCKFALWVGRTPTSDNKIV 1521
Query: 113 LCQAPTEESRSEWLRCLGLILQTQRDFLK-AIQSPIAYQK 151
L +A E++ +W++ + ++Q + LK A++ PI K
Sbjct: 1522 L-KASGIENKQDWIKHIREVIQERTVHLKGALKEPIHIPK 1560
>sp|Q6P720|ARHGP_RAT Rho guanine nucleotide exchange factor 25 OS=Rattus norvegicus
GN=Arhgef25 PE=2 SV=1
Length = 579
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 77/155 (49%), Gaps = 37/155 (23%)
Query: 1 MMDVARLKGFDGKITAQGKLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIFSEA 60
MM + RL+GF+GK+TAQGKLL + TE S SRG+E +VFLFEQ +IFSEA
Sbjct: 375 MMSLGRLRGFEGKLTAQGKLLGQDTFLVTEPEAGGLLS--SRGRERRVFLFEQIVIFSEA 432
Query: 61 VGKKTQFSVNKMSVEEKVPEELTPAGSGGSRGGLSAYFLLKSIDPKKPALTFLCQAPTEE 120
+G + Y SI PA++ QA
Sbjct: 433 LGGGGRGGTQ------------------------PGYVYKNSIKASDPAVS---QA---- 461
Query: 121 SRSEWLRCLGLILQTQRDFLKAIQSPIAYQKELSK 155
W++ + IL++QRDFL A+QSPI YQ+ S+
Sbjct: 462 ----WIKQVAQILESQRDFLNALQSPIEYQRRESQ 492
>sp|Q63406|MCF2L_RAT Guanine nucleotide exchange factor DBS OS=Rattus norvegicus
GN=Mcf2l PE=2 SV=3
Length = 1149
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Query: 2 MDVARLKGFDGKITAQGKLLMRG--PLYCTETSVASSSSSNSRGKELQ--VFLFEQSMIF 57
M + + G+DG + GKLLM+G ++ + +R K +Q +FL E++++F
Sbjct: 813 MHLIAITGYDGNLGDLGKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLF 872
Query: 58 SEAVGKKTQFSVNKMSVEEKVPEELTPAGSGGSRGGLSAYFLLKSIDPKKPALTFLCQAP 117
+ + + S K +T G + G + F I ++ QAP
Sbjct: 873 CKKREENGEGYEKAPSYSYKQSLNMTAVGITENVKGDTKKF---EIWYNAREEVYIIQAP 929
Query: 118 TEESRSEWLRCLGLILQTQ 136
T E ++ W+ + +L +Q
Sbjct: 930 TPEIKAAWVNEIRKVLTSQ 948
>sp|Q64096|MCF2L_MOUSE Guanine nucleotide exchange factor DBS OS=Mus musculus GN=Mcf2l
PE=1 SV=2
Length = 1149
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Query: 2 MDVARLKGFDGKITAQGKLLMRG--PLYCTETSVASSSSSNSRGKELQ--VFLFEQSMIF 57
M + + G+DG + GKLLM+G ++ + +R K +Q +FL E++++F
Sbjct: 813 MHLIAITGYDGNLGDLGKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLF 872
Query: 58 SEAVGKKTQFSVNKMSVEEKVPEELTPAGSGGSRGGLSAYFLLKSIDPKKPALTFLCQAP 117
+ + + S K +T G + G + F I ++ QAP
Sbjct: 873 CKKREENGEGYEKAPSYSYKQSLNMTAVGITENVKGDTKKF---EIWYNAREEVYIIQAP 929
Query: 118 TEESRSEWLRCLGLILQTQ 136
T E ++ W+ + +L +Q
Sbjct: 930 TPEIKAAWVNEIRKVLTSQ 948
>sp|P11433|CDC24_YEAST Cell division control protein 24 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CDC24 PE=1 SV=2
Length = 854
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 8/67 (11%)
Query: 4 VARLKGFDGKITAQGKLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMI-FSEAVG 62
V KG+ +I+ G+LL Y + +++++SS+ +E +V+LFE+ +I FSE V
Sbjct: 471 VVNWKGY--RISKFGELL-----YFDKVFISTTNSSSEPEREFEVYLFEKIIILFSEVVT 523
Query: 63 KKTQFSV 69
KK+ S+
Sbjct: 524 KKSASSL 530
>sp|Q5R6F2|ARHG3_PONAB Rho guanine nucleotide exchange factor 3 OS=Pongo abelii GN=ARHGEF3
PE=2 SV=1
Length = 526
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 12/102 (11%)
Query: 40 NSRGKELQVFLFEQSMIFSEAVGKKTQFSV----NKMSVEEKVPEELTPAGS--GGS-RG 92
N+RG +L VFLF++ ++ + AV Q + V++ + E+L GGS RG
Sbjct: 343 NNRGVKLHVFLFQEVLVITRAVTHNEQLCYQLYRQPIPVKDLLLEDLQDGEVRLGGSLRG 402
Query: 93 GLSA-----YFLLKSIDPKKPALTFLCQAPTEESRSEWLRCL 129
S F S + T QA ++ +WL C+
Sbjct: 403 AFSNNERIKNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCI 444
>sp|Q9N0A8|ARHG3_MACFA Rho guanine nucleotide exchange factor 3 OS=Macaca fascicularis
GN=ARHGEF3 PE=2 SV=1
Length = 526
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 12/102 (11%)
Query: 40 NSRGKELQVFLFEQSMIFSEAVGKKTQFSV----NKMSVEEKVPEELTPAGS--GGS-RG 92
N+RG +L VFLF++ ++ + AV Q + V++ + E+L GGS RG
Sbjct: 343 NNRGVKLHVFLFQEVLVITRAVTHNEQLCYQLYRQPIPVKDLLLEDLQDGEVRLGGSLRG 402
Query: 93 GLSA-----YFLLKSIDPKKPALTFLCQAPTEESRSEWLRCL 129
S F S + T QA ++ +WL C+
Sbjct: 403 AFSNNERIKNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCI 444
>sp|Q9NR81|ARHG3_HUMAN Rho guanine nucleotide exchange factor 3 OS=Homo sapiens GN=ARHGEF3
PE=2 SV=1
Length = 526
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 12/102 (11%)
Query: 40 NSRGKELQVFLFEQSMIFSEAVGKKTQFSV----NKMSVEEKVPEELTPAGS--GGS-RG 92
N+RG +L VFLF++ ++ + AV Q + V++ + E+L GGS RG
Sbjct: 343 NNRGVKLHVFLFQEVLVITRAVTHNEQLCYQLYRQPIPVKDLLLEDLQDGEVRLGGSLRG 402
Query: 93 GLSA-----YFLLKSIDPKKPALTFLCQAPTEESRSEWLRCL 129
S F S + T QA ++ +WL C+
Sbjct: 403 AFSNNERIKNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCI 444
>sp|Q91X46|ARHG3_MOUSE Rho guanine nucleotide exchange factor 3 OS=Mus musculus GN=Arhgef3
PE=1 SV=1
Length = 524
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 16/104 (15%)
Query: 40 NSRGKELQVFLFEQSMIFSEAVGKKTQFS---------VNKMSVEEKVPEELTPAGSGGS 90
N+RG +L VFLF++ ++ + AV Q V +++E+ E+ GS
Sbjct: 342 NNRGVKLHVFLFQEVLVITRAVTHNEQLCYQLYRQPIPVKDLTLEDLQDGEVRLGGS--L 399
Query: 91 RGGLSA-----YFLLKSIDPKKPALTFLCQAPTEESRSEWLRCL 129
RG S F S + T QA ++ +WL C+
Sbjct: 400 RGAFSNNERVKNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCI 443
>sp|Q9PKA7|MNMA_CHLMU tRNA-specific 2-thiouridylase MnmA OS=Chlamydia muridarum (strain
MoPn / Nigg) GN=mnmA PE=3 SV=2
Length = 358
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 91 RGGLSAYFLLKSIDPKKPALTFLCQAPTEESRSEWLRCLGLILQTQ 136
RGGL L + +DP K FLC P +E+ S L LG + +T+
Sbjct: 128 RGGLDGTGLFRGVDPNKDQSYFLCGTP-KEALSNVLFPLGGMYKTE 172
>sp|Q9H8W4|PKHF2_HUMAN Pleckstrin homology domain-containing family F member 2 OS=Homo
sapiens GN=PLEKHF2 PE=1 SV=1
Length = 249
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 44 KELQVFLFEQSMIFSEAVGKKTQFSVNKMSVEEKVPEELTPAGSGGSRGGLSAYFLLKSI 103
K Q FLF +++ V +K ++ NK + +P E S G L +L+K+
Sbjct: 51 KARQFFLFNDILVYGNIVIQKKKY--NKQHI---IPLENVTIDSIKDEGDLRNGWLIKT- 104
Query: 104 DPKKPALTFLCQAPTEESRSEWL 126
P +F A T +SEW+
Sbjct: 105 ----PTKSFAVYAATATEKSEWM 123
>sp|Q5ZLY5|PKHF2_CHICK Pleckstrin homology domain-containing family F member 2 OS=Gallus
gallus GN=PLEKHF2 PE=2 SV=1
Length = 249
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 44 KELQVFLFEQSMIFSEAVGKKTQFSVNKMSVEEKVPEELTPAGSGGSRGGLSAYFLLKSI 103
K Q FLF +++ V +K ++ NK + +P E S G L +L+K+
Sbjct: 51 KARQFFLFNDILVYGNIVIQKKKY--NKQHI---IPLENVTIDSIQDEGDLRNGWLIKT- 104
Query: 104 DPKKPALTFLCQAPTEESRSEWL 126
P +F A T +SEW+
Sbjct: 105 ----PTKSFAVYAATATEKSEWM 123
>sp|O15068|MCF2L_HUMAN Guanine nucleotide exchange factor DBS OS=Homo sapiens GN=MCF2L
PE=1 SV=2
Length = 1137
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 65/148 (43%), Gaps = 25/148 (16%)
Query: 2 MDVARLKGFDGKITAQGKLLMRG--PLYCTETSVASSSSSNSRGKELQ--VFLFEQSMIF 57
M + + G+DG + GKLLM+G ++ + +R K +Q +FL E++++F
Sbjct: 812 MHLIAITGYDGNLGDLGKLLMQGSFSVWTDHKRGHTKVKELARFKPMQRHLFLHEKAVLF 871
Query: 58 SEAVGKKTQFSVNKMSVEEKVPEELTPAGSGGSRGGLSAYFLLKSI--DPKKPAL----- 110
K E E P+ S ++A + +++ D KK +
Sbjct: 872 C------------KKREENGEGYEKAPSYSYKQSLNMAAVGITENVKGDAKKFEIWYNAR 919
Query: 111 --TFLCQAPTEESRSEWLRCLGLILQTQ 136
++ QAPT E ++ W+ + +L +Q
Sbjct: 920 EEVYIVQAPTPEIKAAWVNEIRKVLTSQ 947
>sp|Q5ZLX4|ARHG3_CHICK Rho guanine nucleotide exchange factor 3 OS=Gallus gallus
GN=Arhgef3 PE=2 SV=1
Length = 524
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 12/102 (11%)
Query: 40 NSRGKELQVFLFEQSMIFSEAVGKKTQFSV----NKMSVEEKVPEELTPAGS--GGS-RG 92
N+RG +L VFLF++ ++ + A+ Q + V + V E+L GGS RG
Sbjct: 343 NNRGVKLHVFLFQEVLVITRAITHNEQLCYQLYRQPIPVMDLVLEDLQDGEVRLGGSIRG 402
Query: 93 GLSA-----YFLLKSIDPKKPALTFLCQAPTEESRSEWLRCL 129
S F S + + QA ++ +WL C+
Sbjct: 403 AFSNNERIKNFFRVSFKNGSQSQSHSLQANDSFNKQQWLNCI 444
>sp|Q7ZUV1|PKHF2_DANRE Pleckstrin homology domain-containing family F member 2 OS=Danio
rerio GN=plekhf2 PE=2 SV=1
Length = 247
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 14/97 (14%)
Query: 42 RGKELQVFLFEQSMIFSEAVGKKTQFSVNKMSVEEKVPEELTPAGSGGSRGGLSAYFLLK 101
R K Q FLF +++ V +K ++ NK + +P E + G L +L+K
Sbjct: 49 RPKARQFFLFNDILVYGNIVIQKKKY--NKQHI---IPLESVTIDTVEDEGELRNGWLIK 103
Query: 102 SIDPKKPALTFLCQAPTEESRSEWL----RCLGLILQ 134
+ P +F A T +SEW+ +C+ +L+
Sbjct: 104 T-----PTKSFAVYAATATEKSEWMSHINKCVSDLLE 135
>sp|Q035Z2|MUTS_LACC3 DNA mismatch repair protein MutS OS=Lactobacillus casei (strain
ATCC 334) GN=mutS PE=3 SV=1
Length = 857
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 64 KTQFSV-NKMSV----EEKVPEELTPAGSGGSRGGLSAYFLLKSIDPKKPALTFLCQAPT 118
K++F++ N++S E VPEELT +G + G + +P +++ QA T
Sbjct: 158 KSKFALQNELSALATKEIVVPEELTDDDAGMLKQGERLLSVQPDAEPTSEG-SYVSQALT 216
Query: 119 EESRSEWLRCL-GLILQTQRDFLKAIQSPIAYQ 150
+ + + ++ L +L TQ+ L IQ +AYQ
Sbjct: 217 DPAEAAVVQMLMAYLLNTQKRSLAHIQKAVAYQ 249
>sp|P26332|VSM2_TRYBB Variant surface glycoprotein MITAT 1.2 OS=Trypanosoma brucei brucei
PE=1 SV=1
Length = 476
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 87 SGGSRGGLSAYFLLKSIDPKKPALTFLCQA 116
+GG+ GG+ L I PK+PA T+L +A
Sbjct: 162 AGGTIGGVPCKLQLSPIQPKRPAATYLGKA 191
>sp|O74164|HMDH_CYBJA 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Cyberlindnera
jadinii GN=HMG PE=2 SV=1
Length = 934
Score = 29.6 bits (65), Expect = 7.2, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 11/115 (9%)
Query: 27 YCTETSVASSSSSNSRGKELQVFLFEQSMIFSEAVGKKTQFSVNKMSVEEKVPEELTPAG 86
YCT+ A+ + N RGK + ++ I +AV K + SV K V+ V + L +
Sbjct: 748 YCTDKKPAAVNWINGRGKS----VVAEASIPKDAVVKVLKSSV-KAVVDVNVNKNLIGSA 802
Query: 87 SGGSRGGLSAYFLLKSIDPKKPALTFLCQAPTEESRSEWLRCLGLILQTQRDFLK 141
GS GG +A ++ + L Q P + S C+ L+ +T+ LK
Sbjct: 803 MAGSVGGFNA----QAANMVTAVYLALGQDPAQNVESS--NCITLMTETEDGDLK 851
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,812,881
Number of Sequences: 539616
Number of extensions: 1985973
Number of successful extensions: 5458
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 5413
Number of HSP's gapped (non-prelim): 34
length of query: 157
length of database: 191,569,459
effective HSP length: 108
effective length of query: 49
effective length of database: 133,290,931
effective search space: 6531255619
effective search space used: 6531255619
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)