RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11101
(157 letters)
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small
molecular weight G-protein, complex, protein-protein
complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Length = 354
Score = 102 bits (256), Expect = 5e-27
Identities = 58/168 (34%), Positives = 85/168 (50%), Gaps = 27/168 (16%)
Query: 1 MMDVARLKGFDGKITAQGKLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIFSEA 60
MM + RL+GF+GK+TAQGKLL + + TE +SRG+E +VFLFEQ +IFSEA
Sbjct: 188 MMTLGRLRGFEGKLTAQGKLLGQDTFWVTEPEA--GGLLSSRGRERRVFLFEQIIIFSEA 245
Query: 61 VGK------------KTQFSVNKMSVEEKVPEELTPAGSGGSRGGLSAYFLLKSIDPKKP 108
+G K V+ + +E + + F L S P+
Sbjct: 246 LGGGVRGGTQPGYVYKNSIKVSCLGLEGNLQGD-------------PCRFALTSRGPEGG 292
Query: 109 ALTFLCQAPTEESRSEWLRCLGLILQTQRDFLKAIQSPIAYQKELSKD 156
++ QA W++ + IL++QRDFL A+QSPI YQ+ S+
Sbjct: 293 IQRYVLQAADPAISQAWIKHVAQILESQRDFLNALQSPIEYQRRESQT 340
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO,
GTPase, guanine-nucleotide releas factor,
phosphorylation, signaling protein; 1.70A {Homo sapiens}
SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Length = 311
Score = 75.6 bits (186), Expect = 3e-17
Identities = 30/145 (20%), Positives = 63/145 (43%), Gaps = 27/145 (18%)
Query: 1 MMDVARLKGFDGKITAQGKLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIFSEA 60
M ++ L+GFD I +QG+L+++ V + +G+E +FLFE S++FS+
Sbjct: 184 AMHLSMLEGFDENIESQGELILQE-----SFQVWDPKTLIRKGRERHLFLFEMSLVFSKE 238
Query: 61 VGK---------KTQFSVNKMSVEEKVPEELTPAGSGGSRGGLSAYFLLKSIDPKKPALT 111
V K++ +++ V E V + F L
Sbjct: 239 VKDSSGRSKYLYKSKLFTSELGVTEHVEGD-------------PCKFALWVGRTPTSDNK 285
Query: 112 FLCQAPTEESRSEWLRCLGLILQTQ 136
+ +A + E++ +W++ + ++Q +
Sbjct: 286 IVLKASSIENKQDWIKHIREVIQER 310
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange
factor (GEF), small G-protein, signaling protein; 2.40A
{Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A
1kzg_A 1rj2_A
Length = 353
Score = 74.6 bits (183), Expect = 1e-16
Identities = 28/174 (16%), Positives = 64/174 (36%), Gaps = 33/174 (18%)
Query: 1 MMDVARLKGFDGKITAQGKLLMRGPLYCTETS----VASSSSSNSRGKELQVFLFEQSMI 56
M + + G+DG + GKLLM+G + + + +FL E++++
Sbjct: 191 SMHLIAITGYDGNLGDLGKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVL 250
Query: 57 FSEAVGK-------------KTQFSVNKMSVEEKVPEELTPAGSGGSRGGLSAYFLLKSI 103
F + + K ++ + + E V + + F +
Sbjct: 251 FCKKREENGEGYEKAPSYSYKQSLNMTAVGITENVKGD-------------TKKFEIWYN 297
Query: 104 DPKKPALTFLCQAPTEESRSEWLRCLGLILQTQRDFLKAIQSPIAYQKELSKDT 157
++ ++ QAPT E ++ W+ + +L +Q + A ++ S +
Sbjct: 298 AREE---VYIIQAPTPEIKAAWVNAIRKVLTSQLQACREASQHRALEQSHSLEH 348
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus
norvegicus} SCOP: a.87.1.1 b.55.1.1
Length = 402
Score = 67.2 bits (164), Expect = 5e-14
Identities = 23/161 (14%), Positives = 48/161 (29%), Gaps = 24/161 (14%)
Query: 6 RLKGFDGK--ITAQGKLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIFSEAVGK 63
+ ++G + +L+ G + R ++ FLF+ M+ +
Sbjct: 241 SVLDWEGDDILDRSSELIYTGEMAWI-------YQPYGRNQQRVFFLFDHQMVLCKKDLI 293
Query: 64 -------KTQFSVNKMSVEEKVPEELTPAGSGGSRGGLSAYFLLKSIDPKKPALTFLCQA 116
K + ++K V + F L + + ++ L A
Sbjct: 294 RRDILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNA-----FKLHNKETEE---VHLFFA 345
Query: 117 PTEESRSEWLRCLGLILQTQRDFLKAIQSPIAYQKELSKDT 157
E + WLR + ++ K QK + T
Sbjct: 346 KKLEEKIRWLRAFREERKMVQEDEKIGFEISENQKRQAAMT 386
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 66.8 bits (163), Expect = 6e-14
Identities = 18/136 (13%), Positives = 41/136 (30%), Gaps = 21/136 (15%)
Query: 6 RLKGFDGKITAQGKLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIFSEAVGKKT 65
++ D + G+ + G L T S + FL +++++ + G
Sbjct: 220 SIENLDQSLANYGRPKIDGELKIT-------SVERRSKTDRYAFLLDKALLICKRRGDSY 272
Query: 66 QF----SVNKMSVEEKVPEELTPAGSGGSRGGLSAYFLLKSIDPKKPALTFLCQAPTEES 121
+++ V + E S FLL + + T E
Sbjct: 273 DLKASVNLHSFQVRDDSSGE-------RDNKKWSHMFLLIEDQGAQ---GYELFFKTREL 322
Query: 122 RSEWLRCLGLILQTQR 137
+ +W+ + +
Sbjct: 323 KKKWMEQFEMAISNIY 338
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 64.7 bits (157), Expect = 4e-13
Identities = 17/136 (12%), Positives = 40/136 (29%), Gaps = 21/136 (15%)
Query: 6 RLKGFDGKITAQGKLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIFSEAVGKKT 65
++ D + G+ + G L T S + FL +++++ + G
Sbjct: 392 SIENLDQSLAHYGRPKIDGELKIT-------SVERRSKMDRYAFLLDKALLICKRRGDSY 444
Query: 66 QFS----VNKMSVEEKVPEELTPAGSGGSRGGLSAYFLLKSIDPKKPALTFLCQAPTEES 121
++ V + + S FLL + + T E
Sbjct: 445 DLKDFVNLHSFQVRDDSSGD-------RDNKKWSHMFLLIEDQGAQ---GYELFFKTREL 494
Query: 122 RSEWLRCLGLILQTQR 137
+ +W+ + +
Sbjct: 495 KKKWMEQFEMAISNIY 510
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 59.2 bits (143), Expect = 3e-11
Identities = 17/154 (11%), Positives = 52/154 (33%), Gaps = 14/154 (9%)
Query: 6 RLKGFDGK--ITAQGKLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIF-SEAVG 62
++ ++G+ + +L+ G L + ++ ++ FLF+ +I+ + +
Sbjct: 318 SIEDWEGEDLLVRSSELIYSGELTRV-------TQPQAKSQQRMFFLFDHQLIYCKKDLL 370
Query: 63 KKTQFSV-NKMSVEEKVPEELTPAGSGGSRGGLSAYFLLKSIDPKKPALTFLCQAPTEES 121
++ ++ ++ +L + F L + L E
Sbjct: 371 RRDVLYYKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFRLHRGATGD---SHLLCTRKPEQ 427
Query: 122 RSEWLRCLGLILQTQRDFLKAIQSPIAYQKELSK 155
+ WL+ + + + S Q++ +
Sbjct: 428 KQRWLKAFAREREQVQLDQETGFSITELQRKQAM 461
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology
domain, pleckstrin homology domain, GTPase, guanine
nucleotide exchange factor; 2.80A {Mus musculus} SCOP:
a.87.1.1 b.55.1.1
Length = 377
Score = 54.2 bits (130), Expect = 2e-09
Identities = 22/145 (15%), Positives = 49/145 (33%), Gaps = 18/145 (12%)
Query: 8 KGFDGKITAQGKLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIFSEAVGKKTQF 67
+ + + G LL+ + + +S + EL F+F+ +++ G K +
Sbjct: 226 EKKEVADLSMGDLLLHTSV--IWLNPPASLGKWKKEPELAAFVFKTAVVLVYKDGSKQKK 283
Query: 68 SVNKMSVEEKVPE---------------ELTPAGSGGSRGGLSAY-FLLKSIDPKKPALT 111
+ E ++ S + +KS +P
Sbjct: 284 KLVGSHRLSIYEEWDPFRFRHMIPTEALQVRALPSADAEANAVCEIVHVKSESEGRPERV 343
Query: 112 FLCQAPTEESRSEWLRCLGLILQTQ 136
F + ESR ++L+ + IL+ +
Sbjct: 344 FHLCCSSPESRKDFLKSVHSILRDK 368
>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal
transduction, signaling protein; NMR {Caenorhabditis
elegans} SCOP: b.55.1.1
Length = 119
Score = 49.9 bits (119), Expect = 7e-09
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 32/136 (23%)
Query: 12 GKITAQGKLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIFSEAVGK-------- 63
G G+++ E + K VFLF ++F+E
Sbjct: 2 GDTGKLGRIIRHDAFQVWE--------GDEPPKLRYVFLFRNKIMFTEQDASTSPPSYTH 53
Query: 64 KTQFSVNKMSVEEKVPEELTPAGSGGSRGGLSAYFLLKSIDPKKPALTFLCQA--PTEES 121
+ ++K ++ + +E T +L+ +P P+ + +E
Sbjct: 54 YSSIRLDKYNIRQHTTDEDT--------------IVLQPQEPGLPSFRIKPKDFETSEYV 99
Query: 122 RSEWLRCLGLILQTQR 137
R WLR + +
Sbjct: 100 RKAWLRDIAEEQEKYA 115
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain,
alternative splicing, cytoplasm, guanine- nucleotide
releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Length = 346
Score = 45.1 bits (107), Expect = 2e-06
Identities = 29/139 (20%), Positives = 49/139 (35%), Gaps = 25/139 (17%)
Query: 4 VARLKGFDGKITAQG-KLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIFSEAVG 62
+ +G + L G L N+RG +L VFLF++ ++ + AV
Sbjct: 215 LYLEEGQKDSLIDSSRVLCCHGEL------------KNNRGVKLHVFLFQEVLVITRAVT 262
Query: 63 KKTQFS---------VNKMSVEEKVPEELTPAGS---GGSRGGLSAYFLLKSIDPKKPAL 110
Q V +++E+ E+ GS S F S +
Sbjct: 263 HNEQLCYQLYRQPIPVKDLTLEDLQDGEVRLGGSLRGAFSNNERVKNFFRVSFKNGSQSQ 322
Query: 111 TFLCQAPTEESRSEWLRCL 129
T QA ++ +WL C+
Sbjct: 323 THSLQANDTFNKQQWLNCI 341
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 44.2 bits (104), Expect = 4e-06
Identities = 28/158 (17%), Positives = 51/158 (32%), Gaps = 26/158 (16%)
Query: 6 RLKGFDGKITAQGKLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIFSEAVGK-- 63
+L + + QG LL G + E ++ + + +FL ++++
Sbjct: 223 KLVHIEHSVRGQGDLLQPGREFLKEGTL--MKVTGKNRRPRHLFLMNDVLLYTYPQKDGK 280
Query: 64 ---KTQFSVNKMSVEEKVPEELTPAGSGGSRGGLSAYFLLKSIDPKKPALTFLCQAPTEE 120
K +V M V V E++ A LK + + A +
Sbjct: 281 YRLKNTLAVANMKVSRPVMEKVPYA--------------LKIETSES---CLMLSASSCA 323
Query: 121 SRSEWLRCLGLIL--QTQRDFLKAIQSPIAYQKELSKD 156
R EW CL L + L A + ++ L
Sbjct: 324 ERDEWYGCLSRALPEDYKAQALAAFHHSVEIRERLGVS 361
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY
crystallography, regulation of RHOA GTPase, protein
complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 3kz1_A*
Length = 368
Score = 41.0 bits (96), Expect = 5e-05
Identities = 17/118 (14%), Positives = 37/118 (31%), Gaps = 15/118 (12%)
Query: 19 KLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIFSEAVGKKTQFSVNKMSV---- 74
K++ GPL S + +L V L E ++ + +K + +
Sbjct: 252 KMIHEGPLTW--------RISKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSS 303
Query: 75 -EEKVPEELTPAGSGGSRGGLSA--YFLLKSIDPKKPALTFLCQAPTEESRSEWLRCL 129
++ + + R + F + P + A T ++ W+ L
Sbjct: 304 DSKQTFSPVLKLNAVLIRSVATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELL 361
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA
complex, pdzrhogef, guanine nucleotide exchange F RHOA,
signaling protein; 2.84A {Homo sapiens}
Length = 418
Score = 41.1 bits (96), Expect = 6e-05
Identities = 18/118 (15%), Positives = 35/118 (29%), Gaps = 15/118 (12%)
Query: 19 KLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIFSEAVGKKTQFSVNKMSVEEKV 78
K++ GPL S + +L V L E ++ + +K + +
Sbjct: 294 KMIHEGPLTW--------RISKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSS 345
Query: 79 PEELTPAGSG-------GSRGGLSAYFLLKSIDPKKPALTFLCQAPTEESRSEWLRCL 129
+ T + S F + P + A T ++ W+ L
Sbjct: 346 DSKQTFSPVLKLNAVLIRSVATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELL 403
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo
sapiens} PDB: 3odo_A
Length = 377
Score = 41.0 bits (96), Expect = 6e-05
Identities = 13/118 (11%), Positives = 33/118 (27%), Gaps = 16/118 (13%)
Query: 19 KLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIFSEAVGKKTQFSVNKMSVEEKV 78
KL+ GPL + + E+ V L + ++ + ++ + ++
Sbjct: 258 KLVHEGPLTW--------RVTKDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTP 309
Query: 79 PEELTPAGSGGSRGGL-------SAYFLLKSIDPKKPALTFLCQAPTEESRSEWLRCL 129
+ + F + ++ + A T R W +
Sbjct: 310 DGKTMLRPVLRLTSAMTREVATDHKAFYVLFTWDQEAQ-IYELVAQTVSERKNWCALI 366
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH),
beta sandwich (PH), signaling protein; 2.13A {Homo
sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Length = 385
Score = 39.1 bits (91), Expect = 3e-04
Identities = 15/119 (12%), Positives = 33/119 (27%), Gaps = 18/119 (15%)
Query: 19 KLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIFSEAVGKKTQFSVNKMSVEEKV 78
K++ GPL + + +L L E ++ + + + +
Sbjct: 256 KMIHEGPLVW--------KVNRDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTA 307
Query: 79 PEELTPAGSGGSRGGL--------SAYFLLKSIDPKKPALTFLCQAPTEESRSEWLRCL 129
+ T + L A F++ D A T ++ W +
Sbjct: 308 DSKHTFSPVIKLSTVLVRQVATDNKALFVISMSDNGAQIYEL--VAQTVSEKTVWQDLI 364
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo
sapiens}
Length = 185
Score = 38.1 bits (88), Expect = 3e-04
Identities = 24/128 (18%), Positives = 44/128 (34%), Gaps = 33/128 (25%)
Query: 10 FDGKITAQGKLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMI----------FSE 59
F + + KL+ G ++ ++ R KE+Q L ++ F+
Sbjct: 61 FAKEDLKRKKLVRDGSVFL--------KNAAGRLKEVQAVLLTDILVFLQEKDQKYIFAS 112
Query: 60 AVGKKTQFSVNKMSVEEKVPEELTPAGSGGSRGGLSAYFLLKSIDPKKPALTFLCQAPTE 119
K T S+ K+ V E EE FL+ + A ++
Sbjct: 113 LDQKSTVISLKKLIVREVAHEE-------------KGLFLISMGMTDPEMVEV--HASSK 157
Query: 120 ESRSEWLR 127
E R+ W++
Sbjct: 158 EERNSWIQ 165
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA
GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo
sapiens} PDB: 3odx_A
Length = 536
Score = 38.5 bits (89), Expect = 4e-04
Identities = 15/119 (12%), Positives = 37/119 (31%), Gaps = 18/119 (15%)
Query: 19 KLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIFSEAVGKKTQFSVNKMSVEEKV 78
KL+ GPL + + + E+ V L + ++ + ++ + ++
Sbjct: 411 KLVHEGPL--------TWRVTKDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTP 462
Query: 79 PEELTPAGSGGSRGGL--------SAYFLLKSIDPKKPALTFLCQAPTEESRSEWLRCL 129
+ + A+++L + D + A T R W +
Sbjct: 463 DGKTMLRPVLRLTSAMTREVATDHKAFYVLFTWDQEAQIYEL--VAQTVSERKNWCALI 519
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene
regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1
PDB: 1pms_A 1awe_A
Length = 354
Score = 34.9 bits (80), Expect = 0.006
Identities = 22/140 (15%), Positives = 43/140 (30%), Gaps = 42/140 (30%)
Query: 6 RLKGFDGK--ITAQGKLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIFSEAVGK 63
+ G++GK + +M G L E +FLF+ MI ++
Sbjct: 231 NIDGWEGKDIGQCCNEFIMEGTLTR-----------VGAKHERHIFLFDGLMICCKSNHG 279
Query: 64 --------------KTQFSVNKMSVEEKVPEELTPAGSGGSRGGLSAYFLLKSIDPKKPA 109
K +F + K+ + +K F + D
Sbjct: 280 QPRLPGASNAEYRLKEKFFMRKVQINDKDDTN-----------EYKHAFEIILKDEN--- 325
Query: 110 LTFLCQAPTEESRSEWLRCL 129
+ + A + E ++ W+ L
Sbjct: 326 -SVIFSAKSAEEKNNWMAAL 344
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC),
endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Length = 510
Score = 34.6 bits (79), Expect = 0.008
Identities = 18/125 (14%), Positives = 34/125 (27%), Gaps = 23/125 (18%)
Query: 14 ITAQGKLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIFSEAVGKKTQFSVNKMS 73
KLL G LY KEL FLF ++ + V + S ++
Sbjct: 247 CLGPRKLLHSGKLY-----------KTKSNKELHGFLFNDFLLLTYMVKQFAVSSGSEKL 295
Query: 74 VEEKVPEELTPAGSG---------GSRGGLSAYFLLKSIDPKKPALTFLCQAPTEESRSE 124
K + + S + + + + R+
Sbjct: 296 FSSKSNAQFKMYKTPIFLNEVLVKLPTDPSSDEPVFHISHIDR---VYTLRTDNINERTA 352
Query: 125 WLRCL 129
W++ +
Sbjct: 353 WVQKI 357
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc
binding, X-linked agammaglobulinemia, tyrosine-protein
kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A*
2z0p_A* 1bwn_A*
Length = 169
Score = 32.6 bits (73), Expect = 0.029
Identities = 18/100 (18%), Positives = 30/100 (30%), Gaps = 10/100 (10%)
Query: 51 FEQSMIFSEAVGKKTQFSVNKMSVEEKVPEELTPAGSGGSRGGLSAYFLLKSIDPKK--- 107
+E KK V K++ E V E P ++ I +
Sbjct: 39 YEYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRRGEESSEMEQISIIERFP 98
Query: 108 -------PALTFLCQAPTEESRSEWLRCLGLILQTQRDFL 140
+PTEE R W+ L +++ D +
Sbjct: 99 YPFQVVYDEGPLYVFSPTEELRKRWIHQLKNVIRYNSDLV 138
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.032
Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 43/118 (36%)
Query: 43 GKELQVFLFEQS----MIFSEA---VGKKTQFSVNKMSVEEKVPEELT--PAGSGGSR-- 91
G +L ++ S +++ A FS+ + V P LT G G R
Sbjct: 1632 GMDL----YKTSKAAQDVWNRADNHFKDTYGFSILDI-VINN-PVNLTIHFGGEKGKRIR 1685
Query: 92 -------------GGLSAYFLLKSIDPKKPALTFLCQAPTEESRSEWLRCLGLILQTQ 136
G L + K I+ + TF ++ GL+ TQ
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF--RSEK-----------GLLSATQ 1730
Score = 25.8 bits (56), Expect = 7.6
Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 20/44 (45%)
Query: 25 PLYCTETSVASSSSSNSRGKELQVF-------LFEQSMIFSEAV 61
P+Y T G +L+V + + I V
Sbjct: 458 PVYDTFD-----------GSDLRVLSGSISERIVD--CIIRLPV 488
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid
degradation, phosphatidylinositol (3, 4)-bisphosphate,
signalling; HET: CIT; 1.40A {Homo sapiens} SCOP:
b.55.1.1
Length = 125
Score = 31.7 bits (72), Expect = 0.044
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 111 TFLCQAPTEESRSEWLRCLGLILQTQRDFLKAIQS 145
TF QA + E W++ + + QR ++ S
Sbjct: 88 TFYVQADSPEEMHSWIKAVSGAIVAQRGPGRSASS 122
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH
domains (ARAP) 2, PH domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Length = 115
Score = 31.2 bits (71), Expect = 0.047
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 111 TFLCQAPTEESRSEWLRCLGLILQTQR 137
TF+ + EE R++W+ L L++Q
Sbjct: 76 TFVFRVEKEEERNDWISILLNALKSQS 102
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 115
Score = 31.2 bits (71), Expect = 0.059
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 111 TFLCQAPTEESRSEWLRCLGLILQTQR 137
TF A ++ + EW++ + + +
Sbjct: 80 TFEISASDKKKKQEWIQAIHSTIHLLK 106
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides;
pleckstrin, inositol tetrakisphosphate signal
transduction protein, adaptor protein; HET: 4IP; 1.80A
{Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Length = 126
Score = 30.8 bits (70), Expect = 0.069
Identities = 11/37 (29%), Positives = 14/37 (37%)
Query: 111 TFLCQAPTEESRSEWLRCLGLILQTQRDFLKAIQSPI 147
TF A T EW++ L L R L + I
Sbjct: 89 TFYLCAKTGVEADEWIKILRWKLSQIRKQLNQGEGTI 125
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction;
1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Length = 123
Score = 30.1 bits (68), Expect = 0.13
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 111 TFLCQAPTEESRSEWLRCLGLILQTQRDFLKAIQSP 146
T++ A T E WLR LG + + D +SP
Sbjct: 86 TYVLAADTLEDLRGWLRALGRASRAEGDDYGQPRSP 121
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Length = 228
Score = 30.3 bits (68), Expect = 0.18
Identities = 8/42 (19%), Positives = 16/42 (38%)
Query: 111 TFLCQAPTEESRSEWLRCLGLILQTQRDFLKAIQSPIAYQKE 152
TF A + E S+W L + + ++ + A +
Sbjct: 132 TFHLIAESPEDASQWFSVLSQVHSSTDQEIREMHDEQANPQN 173
Score = 25.7 bits (56), Expect = 6.3
Identities = 6/19 (31%), Positives = 7/19 (36%)
Query: 111 TFLCQAPTEESRSEWLRCL 129
C A T E W+ L
Sbjct: 206 VLHCNADTPEEMHHWITLL 224
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH
domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 117
Score = 29.7 bits (67), Expect = 0.18
Identities = 6/27 (22%), Positives = 13/27 (48%)
Query: 111 TFLCQAPTEESRSEWLRCLGLILQTQR 137
T+ A + E + W++ +G + Q
Sbjct: 86 TYFFSAESPEEQEAWIQAMGEAARVQS 112
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 113
Score = 29.2 bits (66), Expect = 0.21
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 111 TFLCQAPTEESRSEWLRCLGLILQTQR 137
QA E R W+R + ++
Sbjct: 78 DHFFQAAFLEERDAWVRDINKAIKCIE 104
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain,
BAR-PH domain, protein transpo; 2.05A {Homo sapiens}
PDB: 2z0o_A 2elb_A
Length = 385
Score = 30.4 bits (67), Expect = 0.25
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 98 FLLKSIDPKKPALTFLCQAPTEESRSEWLRCLGLILQ 134
F + S D KK + + QA +++ EW+ + I +
Sbjct: 342 FQITSFDGKK---SSILQAESKKDHEEWICTINNISK 375
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, transferase; NMR {Homo sapiens}
Length = 164
Score = 29.7 bits (66), Expect = 0.26
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 111 TFLCQAPTEESRSEWLRCLGLILQTQRDFL 140
T AP+ +SR W++ L ++ + +
Sbjct: 98 TLYIFAPSPQSRDLWVKKLKEEIKNNNNIM 127
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.27
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 19/88 (21%)
Query: 74 VEEKVPEELTPAGSGGSR----GGLSAYFLLKSIDPKKPA--------LTFLCQAPTEES 121
+E+K+ + T + GS L Y I P L FL +
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFY--KPYICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 122 RSEWLRCLGLILQTQRDFL-----KAIQ 144
S++ L + L + + + K +Q
Sbjct: 561 CSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain,
signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Length = 108
Score = 28.9 bits (65), Expect = 0.29
Identities = 4/25 (16%), Positives = 11/25 (44%)
Query: 111 TFLCQAPTEESRSEWLRCLGLILQT 135
T+ A + +W+ + +L+
Sbjct: 82 TYEFTATSPAEARDWVDQISFLLKD 106
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase,
GTP-binding protein,, signaling protein; HET: GNP; 2.00A
{Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Length = 113
Score = 28.7 bits (64), Expect = 0.35
Identities = 12/94 (12%), Positives = 27/94 (28%), Gaps = 9/94 (9%)
Query: 36 SSSSNSRGKELQVFLFEQSMIFSEAVGKKTQFSVNKMSVEEKVPEELTPAGSGGSRGGLS 95
+ ++ + + FL ++ V P + + +
Sbjct: 18 EADHMAQLQRVHGFLMNDCLL----VATWLPQRRGMYRYNALYPLDRLAVVNVKDNPPMK 73
Query: 96 AYFLLKSIDPKKPALTFLCQAPTEESRSEWLRCL 129
F L + + + QA + + EWL L
Sbjct: 74 DMFKLLM--FPE---SRIFQAENAKIKREWLEVL 102
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain,
PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 122
Score = 28.9 bits (65), Expect = 0.36
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 111 TFLCQAPTEESRSEWLRCLGLILQTQ 136
T+ A + E + W++ +G + Q
Sbjct: 97 TYFFSAESPEEQEAWIQAMGEAARVQ 122
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the
pleckstrin homology domain, structural genomics; NMR
{Mus musculus} SCOP: b.55.1.1
Length = 126
Score = 28.8 bits (64), Expect = 0.41
Identities = 4/25 (16%), Positives = 11/25 (44%)
Query: 111 TFLCQAPTEESRSEWLRCLGLILQT 135
+ QA ++ +W+ L ++
Sbjct: 97 RYFLQANDQKDLKDWVEALNQASKS 121
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 119
Score = 28.5 bits (64), Expect = 0.44
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 111 TFLCQAPTEESRSEWLRCL 129
+A T+++ WL+ L
Sbjct: 81 VITLKAATKQAMLYWLQQL 99
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain,
zizimin1, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 150
Score = 28.8 bits (64), Expect = 0.45
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 111 TFLCQAPTEESRSEWLRCLGLILQTQRD 138
++L A +E EW+ L ILQ +
Sbjct: 101 SYLLAADSEVEMEEWITILNKILQLNFE 128
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Length = 129
Score = 28.6 bits (64), Expect = 0.46
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 111 TFLCQAPTEESRSEWLRCLGLILQTQR 137
+ QA T + R+EW++ + + +T +
Sbjct: 97 HYFLQAATPKERTEWIKAIQMASRTGK 123
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 28.6 bits (64), Expect = 0.63
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 102 SIDPKKP-ALTFLCQAPTEESRSEWLRCLGLILQTQRDFLKAIQSPIAYQKELSKD 156
+++ + + E S+ L L + R++ KA Y++ L K
Sbjct: 32 ALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL---FYKELLQKA 84
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; PH domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 28.3 bits (63), Expect = 0.63
Identities = 8/41 (19%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 108 PALTFLCQAPTEESRSEWLRCLGLILQTQRDFLKAIQSPIA 148
T+ QA E+ W+ L + A P +
Sbjct: 75 HNRTYHFQAEDEQDYVAWISVLTNSKEEALT--MAFSGPSS 113
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual
dimerization induced by V derived sequence, signaling
protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Length = 148
Score = 28.3 bits (63), Expect = 0.66
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 111 TFLCQAPTEESRSEWLRCLGLILQTQR 137
+ A + + EW++ L ILQ
Sbjct: 96 IYQFTAASPKDAEEWVQQLKFILQDLG 122
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain,
phosphatidylinositol binding, structural genomics; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 118
Score = 28.2 bits (63), Expect = 0.67
Identities = 4/25 (16%), Positives = 13/25 (52%)
Query: 111 TFLCQAPTEESRSEWLRCLGLILQT 135
+++ A ++ EW++ L + +
Sbjct: 89 SYVLMASSQAEMEEWVKFLRRVAGS 113
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Length = 134
Score = 28.1 bits (62), Expect = 0.69
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 111 TFLCQAPTEESRSEWLRCLGLILQTQR 137
A T+E R W++ L +L R
Sbjct: 105 KNWLSADTKEERDLWMQKLNQVLVDIR 131
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA,
SKIP, complex, virulence, cytoplasm, membrane,
polymorphism, signaling protein; 2.60A {Homo sapiens}
PDB: 3hw2_B
Length = 112
Score = 27.8 bits (62), Expect = 0.75
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 111 TFLCQAPTEESRSEWLRCL 129
A +E +EW++ L
Sbjct: 78 CLELSAESEAEMAEWMQHL 96
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.55.1.1
Length = 117
Score = 27.8 bits (62), Expect = 0.86
Identities = 3/19 (15%), Positives = 7/19 (36%)
Query: 111 TFLCQAPTEESRSEWLRCL 129
+ A S +W+ +
Sbjct: 88 VYNFCAQDVPSAQQWVDRI 106
>1s5u_A Protein YBGC; structural genomics, hypothetical protein,
thioesterase fold, PSI, protein structure initiative;
1.70A {Escherichia coli} SCOP: d.38.1.1
Length = 138
Score = 27.9 bits (63), Expect = 0.96
Identities = 6/22 (27%), Positives = 9/22 (40%), Gaps = 5/22 (22%)
Query: 110 LTFLCQAPTEESRSEWLRCLGL 131
+ F E +R+E LR
Sbjct: 31 VAFY-----ERARTEMLRHHHF 47
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport,
pleckstrin homology domain, phosphatidylinositol
binding, structural genomics; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 130
Score = 27.8 bits (61), Expect = 0.98
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 102 SIDPKKPALTFLCQAPTEESRSEWLRCLGLILQ 134
SI P+ + +A +E W+ L L L+
Sbjct: 92 SITQPLPSSYLIIRATSESDGRCWMDALELALK 124
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus}
SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A*
1u29_A* 1u27_A*
Length = 127
Score = 27.7 bits (61), Expect = 0.99
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 111 TFLCQAPTEESRSEWLRCL 129
+ AP+ E + EW++ +
Sbjct: 97 VYRISAPSPEEKEEWMKSI 115
>2egj_A Hypothetical protein AQ_1494; structural genomics; 1.80A {Aquifex
aeolicus} PDB: 2egi_A 2egr_A
Length = 128
Score = 27.5 bits (62), Expect = 1.1
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 119 EESRSEWLRCLGL 131
EE+R E+LR G
Sbjct: 30 EEARGEFLRSKGF 42
>3r87_A Putative uncharacterized protein; unknown function; 1.05A
{Photobacterium profundum}
Length = 135
Score = 27.6 bits (62), Expect = 1.1
Identities = 4/22 (18%), Positives = 7/22 (31%), Gaps = 5/22 (22%)
Query: 110 LTFLCQAPTEESRSEWLRCLGL 131
L + E +R + L
Sbjct: 30 LKYF-----ERAREHVIDSDKL 46
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus
musculus} SCOP: b.55.1.1 PDB: 1mph_A
Length = 106
Score = 27.2 bits (60), Expect = 1.1
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 111 TFLCQAPTEESRSEWLRCL 129
+L QA +E + W++ +
Sbjct: 85 EYLFQAKDDEEMNTWIQAI 103
>1z54_A Probable thioesterase; hypothetical protein, structural genom
NPPSFA, riken structural genomics/proteomics initiative;
2.10A {Thermus thermophilus} SCOP: d.38.1.1
Length = 132
Score = 27.5 bits (62), Expect = 1.1
Identities = 5/23 (21%), Positives = 8/23 (34%), Gaps = 3/23 (13%)
Query: 119 EESRSEWLRCLGLILQTQRDFLK 141
E +R ++L GL
Sbjct: 30 EAARVDFLERAGL---PYHRVEA 49
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 129
Score = 27.6 bits (61), Expect = 1.2
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 111 TFLCQAPTEESRSEWLRCLGLILQTQRD 138
+ QA ++ R+EW+ + +
Sbjct: 101 HYYIQASSKAERAEWIEAIKKLTSGPSS 128
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH
domain, signaling protein; 2.60A {Mus musculus} SCOP:
b.55.1.1 PDB: 2otx_A
Length = 211
Score = 27.8 bits (61), Expect = 1.2
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 111 TFLCQAPTEESRSEWLRCLGLILQ 134
+ A + + EW++ L ILQ
Sbjct: 185 IYQFTAASPKDAEEWVQQLKFILQ 208
>3hm0_A Probable thioesterase; niaid, ssgcid, decode, UW, SBRI, infectious
disease, rhizobiales, bacteremia, endocarditis,
bacillary angiomatosis; 2.50A {Bartonella henselae}
Length = 167
Score = 27.7 bits (62), Expect = 1.2
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 119 EESRSEWLRCLGL 131
E RSE+LR G
Sbjct: 64 ERGRSEFLRDTGF 76
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 27.8 bits (61), Expect = 1.6
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 10/44 (22%)
Query: 108 PALTFLCQAPTEESRSEWLRCLGLILQTQRDFLKAIQSPIAYQK 151
P FL TE + EW+ KA+ P+ Q+
Sbjct: 346 PDRKFLFACETESDQREWVAAFQ----------KAVDRPMLPQE 379
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural
genomics, spectrin beta chain, brain 2, KIAA0302; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 123
Score = 26.8 bits (59), Expect = 2.0
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 111 TFLCQAPTEESRSEWLRCL 129
+L QA E S WLR +
Sbjct: 94 EYLFQAKDEAEMSSWLRVV 112
>2pzh_A Hypothetical protein HP_0496; lipid, acyl-COA, bacterial membrane,
TOL-PAL system, thioest hot-DOG fold, hydrolase; 1.70A
{Helicobacter pylori}
Length = 135
Score = 26.9 bits (60), Expect = 2.1
Identities = 5/42 (11%), Positives = 13/42 (30%), Gaps = 5/42 (11%)
Query: 110 LTFLCQAPTEESRSEWLRCLGLILQTQRDFLKAIQSPIAYQK 151
L + E +RSE+ ++ + + +
Sbjct: 24 LKYC-----ERARSEFFFKQNVLPENEEGVFVIRSIKADFFT 60
>1lo7_A 4-hydroxybenzoyl-COA thioesterase; hot DOG fold, catalytic
mechanism, hydrolase; HET: 4CO; 1.50A {Pseudomonas SP}
SCOP: d.38.1.1 PDB: 1bvq_A* 1lo8_A* 1lo9_A*
Length = 141
Score = 26.9 bits (60), Expect = 2.2
Identities = 2/13 (15%), Positives = 5/13 (38%)
Query: 119 EESRSEWLRCLGL 131
+ + + GL
Sbjct: 32 DAASRNYFIKCGL 44
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain,
pleckstrin homology domain-containing protein family A
member 5; NMR {Homo sapiens}
Length = 128
Score = 26.7 bits (59), Expect = 2.5
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 111 TFLCQAPTEESRSEWLRCLGLILQTQ 136
T+ T + W++ + Q
Sbjct: 96 TYYFCTDTGKEMELWMKAMLDAALVQ 121
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid
binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2i5c_A* 1zm0_A
Length = 109
Score = 26.2 bits (58), Expect = 2.5
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 111 TFLCQAPTEESRSEWLRCL 129
+ QA T + R+EW++ +
Sbjct: 86 HYFLQAATPKERTEWIKAI 104
>2o16_A Acetoin utilization protein ACUB, putative; structural genomics,
unknown function, PSI-2, protein struct initiative;
1.90A {Vibrio cholerae} SCOP: d.37.1.1
Length = 160
Score = 26.5 bits (59), Expect = 2.7
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 127 RCLGLILQTQRDFLKAIQSPIAYQKELSKDT 157
+G+I T DF+ + + Q+E D
Sbjct: 119 VLVGII--TDSDFVTIAINLLELQEESEPDE 147
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP:
b.55.1.1
Length = 122
Score = 26.5 bits (58), Expect = 3.0
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 111 TFLCQAPTEESRSEWLRCL 129
FL QA + S+W+ L
Sbjct: 96 LFLLQAHDDTEMSQWVTSL 114
>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains,
oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes}
SCOP: c.1.5.1 d.37.1.1
Length = 491
Score = 26.7 bits (60), Expect = 3.4
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 7/30 (23%)
Query: 127 RCLGLILQTQRDFLKAIQSPIAYQKELSKD 156
R GLI T +D K I+ P A +KD
Sbjct: 195 RLSGLI--TIKDIEKVIEFPHA-----AKD 217
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid, TIM
barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus
anthracis} PDB: 3tsd_A* 3tsb_A*
Length = 511
Score = 26.7 bits (60), Expect = 3.4
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 7/30 (23%)
Query: 127 RCLGLILQTQRDFLKAIQSPIAYQKELSKD 156
GLI T +D K I+ P + +KD
Sbjct: 218 VLQGLI--TIKDIEKVIEFPNS-----AKD 240
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.18A {Thermotoga maritima} SCOP:
c.1.5.1
Length = 494
Score = 26.7 bits (60), Expect = 3.7
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 7/30 (23%)
Query: 127 RCLGLILQTQRDFLKAIQSPIAYQKELSKD 156
+ +GLI T +D + I+ P A ++D
Sbjct: 199 KLVGLI--TIKDIMSVIEHPNA-----ARD 221
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP:
b.55.1.1
Length = 150
Score = 26.2 bits (57), Expect = 3.7
Identities = 8/44 (18%), Positives = 18/44 (40%)
Query: 92 GGLSAYFLLKSIDPKKPALTFLCQAPTEESRSEWLRCLGLILQT 135
G + F+ P + A ++E +W++ + + QT
Sbjct: 106 GKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQT 149
>2xem_A DYNE7, TEBC; biosynthetic protein, polyketide biosynthesis,
enediyne anti agent, thioesterase; HET: SSV; 2.10A
{Micromonospora chersina} PDB: 2xfl_A
Length = 150
Score = 26.1 bits (58), Expect = 3.8
Identities = 2/13 (15%), Positives = 3/13 (23%)
Query: 119 EESRSEWLRCLGL 131
R +L
Sbjct: 38 GHCREHFLADHAP 50
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 26.8 bits (60), Expect = 4.2
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 10/43 (23%)
Query: 99 LLKSIDPKKPALTFLCQAPTEESRSEWLRCLGLILQTQRDFLK 141
+L +D P +C AP+ E L Q +
Sbjct: 179 MLSRVDASVPKPQAICLAPSRE----------LARQIMDVVTE 211
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics,
pyrococcus horikoshii OT3, riken structural
genomics/PROT initiative, RSGI; HET: XMP; 2.10A
{Pyrococcus horikoshii} SCOP: c.1.5.1
Length = 486
Score = 26.7 bits (60), Expect = 4.2
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 7/30 (23%)
Query: 127 RCLGLILQTQRDFLKAIQSPIAYQKELSKD 156
+ +GLI T D + + A +D
Sbjct: 192 KLVGLI--TMSDLVARKKYKNA-----VRD 214
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel
beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo
sapiens} PDB: 3via_A 2dhi_A
Length = 112
Score = 25.6 bits (56), Expect = 4.2
Identities = 4/19 (21%), Positives = 6/19 (31%)
Query: 111 TFLCQAPTEESRSEWLRCL 129
T A + + W L
Sbjct: 88 TISLCAESTDDCLAWKFTL 106
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 26.5 bits (59), Expect = 4.3
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 129 LGLILQTQRDFLKAIQSPIAYQKELS 154
L ++ QT+ + A + Y+K L+
Sbjct: 77 LAVVFQTEMEPKLADEE---YRKALA 99
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH,
IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio
cholerae o1 biovar el tor}
Length = 496
Score = 26.7 bits (60), Expect = 4.4
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 7/30 (23%)
Query: 127 RCLGLILQTQRDFLKAIQSPIAYQKELSKD 156
+ G+I T +DF KA P A KD
Sbjct: 193 QLKGMI--TAKDFHKAESKPNA-----CKD 215
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex,
pleckstrin homology domain, ligand binding protein; HET:
I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Length = 129
Score = 26.0 bits (57), Expect = 4.5
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 111 TFLCQAPTEESRSEWLRCL 129
FL Q+ E W R L
Sbjct: 101 EFLLQSDHETELRAWHRAL 119
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed
beta-propeller, structural genomics, joint center F
structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides
fragilis} PDB: 3fgb_A
Length = 361
Score = 26.3 bits (58), Expect = 4.6
Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 87 SGGSRGGLSAYFLLKSIDPKKPALTFLCQAPTE 119
+ +SA+ + D +K L L T
Sbjct: 70 FSKDQAAVSAF----AFDKEKGTLHLLNTQKTM 98
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 107
Score = 25.6 bits (56), Expect = 5.0
Identities = 5/19 (26%), Positives = 7/19 (36%)
Query: 111 TFLCQAPTEESRSEWLRCL 129
+A + E WL L
Sbjct: 78 LAKLEAKSSEEMGHWLGLL 96
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease
mutation, guanine-nucleotide releasing factor, signaling
protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Length = 1049
Score = 26.3 bits (57), Expect = 5.1
Identities = 21/139 (15%), Positives = 43/139 (30%), Gaps = 20/139 (14%)
Query: 6 RLKGFDGK--ITAQGKLLMRGPLYCTETSVASSSSSNSRGKELQVFLFEQSMIFSEAVGK 63
+ G++GK + +M G L E +FLF+ MI ++
Sbjct: 428 NIDGWEGKDIGQCCNEFIMEGTLTR-----------VGAKHERHIFLFDGLMICCKSNHG 476
Query: 64 KTQ---FSVNKMSVEEKVPEELTPAGSGGSRGGLSAYFLLKSIDPKKPALTFLCQAPTEE 120
+ + S + ++EK F + D + + A + E
Sbjct: 477 QPRLPGASNAEYRLKEKFFMRKVQINDKDDTNEYKHAFEIILKDEN----SVIFSAKSAE 532
Query: 121 SRSEWLRCLGLILQTQRDF 139
++ W+ L +
Sbjct: 533 EKNNWMAALISLQYRSTLE 551
>2oiw_A Putative 4-hydroxybenzoyl-COA thioesterase; structural genomics,
protein structure initiative, midwest center for structu
genomics; 2.00A {Geobacillus stearothermophilus} SCOP:
d.38.1.1
Length = 136
Score = 25.7 bits (57), Expect = 5.3
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 119 EESRSEWLRCLGLILQTQRDFLKAIQSPIAYQKEL 153
E R E + L +R + I+ + Y ++
Sbjct: 32 EAGRHEIFKLFTPDLSFKRWRMVIIRMEVDYVNQM 66
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK
repeat, cytoplasm, GTP-binding, GTPase activation,
metal-binding, nucleotide-binding; NMR {Homo sapiens}
Length = 128
Score = 25.6 bits (55), Expect = 5.5
Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 6/34 (17%)
Query: 111 TFLCQAPTEESRSEWLRCLGLILQTQRDFLKAIQ 144
T+ +A + E R W++ + + L ++Q
Sbjct: 101 TWHFEAASFEERDAWVQAI------ESQILASLQ 128
>2w3x_A CALE7; hydrolase, hotdog fold, thioesterase, enediyne biosynthesis;
HET: JEF; 1.75A {Micromonospora echinospora}
Length = 147
Score = 25.8 bits (57), Expect = 5.5
Identities = 2/13 (15%), Positives = 3/13 (23%)
Query: 119 EESRSEWLRCLGL 131
R +L
Sbjct: 34 GRCREMFLYEHAP 46
>1njk_A Hypothetical protein YBAW; structural genomics, thioesterase, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; 1.90A {Escherichia coli}
SCOP: d.38.1.1
Length = 156
Score = 25.8 bits (57), Expect = 6.2
Identities = 7/22 (31%), Positives = 9/22 (40%), Gaps = 5/22 (22%)
Query: 110 LTFLCQAPTEESRSEWLRCLGL 131
L FL EE+R + L
Sbjct: 46 LEFL-----EEARWDGLENSDS 62
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 26.1 bits (57), Expect = 6.7
Identities = 3/26 (11%), Positives = 9/26 (34%), Gaps = 3/26 (11%)
Query: 129 LGLILQTQRDFLKAIQSPIAYQKELS 154
L + + +A + ++ L
Sbjct: 436 LAFLQELNEKMQQADE---DSERGLE 458
>2gf6_A Conserved hypothetical protein; putative thioesterase, structural
genomics, joint center for structural genomics, JCSG;
HET: COA; 1.91A {Sulfolobus solfataricus} SCOP: d.38.1.1
Length = 135
Score = 25.2 bits (56), Expect = 6.9
Identities = 1/14 (7%), Positives = 6/14 (42%)
Query: 119 EESRSEWLRCLGLI 132
+ ++++ I
Sbjct: 34 TNTIEKFIKEKVGI 47
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.130 0.363
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,155,943
Number of extensions: 108459
Number of successful extensions: 403
Number of sequences better than 10.0: 1
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 95
Length of query: 157
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,300,587
Effective search space: 305341677
Effective search space used: 305341677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.5 bits)