BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11102
(87 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZL5|A Chain A, Crystal Structure Of Glu335gln Mutant Of Clostridium
Botulinum Neurotoxin E Catalytic Domain
pdb|1ZL5|B Chain B, Crystal Structure Of Glu335gln Mutant Of Clostridium
Botulinum Neurotoxin E Catalytic Domain
Length = 420
Score = 32.3 bits (72), Expect = 0.063, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 24 VYTEL-GDFEALESCARKLPDSSPLLKPMGEIF-VKYGLCEQAVYVFDKNKHK 74
+YT L D++ + S K+ S+PLL P ++F KYGL + A ++ N +K
Sbjct: 270 IYTNLLADYKKIASKLSKVQVSNPLLNPYKDVFEAKYGLDKDASGIYSVNINK 322
>pdb|1ZN3|A Chain A, Crystal Structure Of Glu335ala Mutant Of Clostridium
Botulinum Neurotoxin Type E
pdb|1ZN3|B Chain B, Crystal Structure Of Glu335ala Mutant Of Clostridium
Botulinum Neurotoxin Type E
Length = 420
Score = 32.3 bits (72), Expect = 0.063, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 24 VYTEL-GDFEALESCARKLPDSSPLLKPMGEIF-VKYGLCEQAVYVFDKNKHK 74
+YT L D++ + S K+ S+PLL P ++F KYGL + A ++ N +K
Sbjct: 270 IYTNLLADYKKIASKLSKVQVSNPLLNPYKDVFEAKYGLDKDASGIYSVNINK 322
>pdb|1ZKX|A Chain A, Crystal Structure Of Glu158alaTHR159ALAASN160ALA- A Triple
Mutant Of Clostridium Botulinum Neurotoxin E Catalytic
Domain
pdb|1ZKX|B Chain B, Crystal Structure Of Glu158alaTHR159ALAASN160ALA- A Triple
Mutant Of Clostridium Botulinum Neurotoxin E Catalytic
Domain
Length = 420
Score = 32.3 bits (72), Expect = 0.063, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 24 VYTEL-GDFEALESCARKLPDSSPLLKPMGEIF-VKYGLCEQAVYVFDKNKHK 74
+YT L D++ + S K+ S+PLL P ++F KYGL + A ++ N +K
Sbjct: 270 IYTNLLADYKKIASKLSKVQVSNPLLNPYKDVFEAKYGLDKDASGIYSVNINK 322
>pdb|1ZKW|A Chain A, Crystal Structure Of Arg347ala Mutant Of Botulinum
Neurotoxin E Catalytic Domain
pdb|1ZKW|B Chain B, Crystal Structure Of Arg347ala Mutant Of Botulinum
Neurotoxin E Catalytic Domain
Length = 420
Score = 32.3 bits (72), Expect = 0.063, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 24 VYTEL-GDFEALESCARKLPDSSPLLKPMGEIF-VKYGLCEQAVYVFDKNKHK 74
+YT L D++ + S K+ S+PLL P ++F KYGL + A ++ N +K
Sbjct: 270 IYTNLLADYKKIASKLSKVQVSNPLLNPYKDVFEAKYGLDKDASGIYSVNINK 322
>pdb|1ZL6|A Chain A, Crystal Structure Of Tyr350ala Mutant Of Clostridium
Botulinum Neurotoxin E Catalytic Domain
pdb|1ZL6|B Chain B, Crystal Structure Of Tyr350ala Mutant Of Clostridium
Botulinum Neurotoxin E Catalytic Domain
Length = 420
Score = 32.3 bits (72), Expect = 0.063, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 24 VYTEL-GDFEALESCARKLPDSSPLLKPMGEIF-VKYGLCEQAVYVFDKNKHK 74
+YT L D++ + S K+ S+PLL P ++F KYGL + A ++ N +K
Sbjct: 270 IYTNLLADYKKIASKLSKVQVSNPLLNPYKDVFEAKYGLDKDASGIYSVNINK 322
>pdb|1T3A|A Chain A, Crystal Structure Of Clostridium Botulinum Neurotoxin Type
E Catalytic Domain
pdb|1T3A|B Chain B, Crystal Structure Of Clostridium Botulinum Neurotoxin Type
E Catalytic Domain
Length = 421
Score = 32.3 bits (72), Expect = 0.063, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 24 VYTEL-GDFEALESCARKLPDSSPLLKPMGEIF-VKYGLCEQAVYVFDKNKHK 74
+YT L D++ + S K+ S+PLL P ++F KYGL + A ++ N +K
Sbjct: 270 IYTNLLADYKKIASKLSKVQVSNPLLNPYKDVFEAKYGLDKDASGIYSVNINK 322
>pdb|1T3C|A Chain A, Clostridium Botulinum Type E Catalytic Domain E212q Mutant
pdb|1T3C|B Chain B, Clostridium Botulinum Type E Catalytic Domain E212q Mutant
Length = 421
Score = 32.3 bits (72), Expect = 0.063, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 24 VYTEL-GDFEALESCARKLPDSSPLLKPMGEIF-VKYGLCEQAVYVFDKNKHK 74
+YT L D++ + S K+ S+PLL P ++F KYGL + A ++ N +K
Sbjct: 270 IYTNLLADYKKIASKLSKVQVSNPLLNPYKDVFEAKYGLDKDASGIYSVNINK 322
>pdb|3FFZ|A Chain A, Domain Organization In Clostridium Butulinum Neurotoxin
Type E Is Unique: Its Implication In Faster
Translocation
pdb|3FFZ|B Chain B, Domain Organization In Clostridium Butulinum Neurotoxin
Type E Is Unique: Its Implication In Faster
Translocation
Length = 1252
Score = 32.3 bits (72), Expect = 0.063, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 24 VYTEL-GDFEALESCARKLPDSSPLLKPMGEIF-VKYGLCEQAVYVFDKNKHK 74
+YT L D++ + S K+ S+PLL P ++F KYGL + A ++ N +K
Sbjct: 271 IYTNLLADYKKIASKLSKVQVSNPLLNPYKDVFEAKYGLDKDASGIYSVNINK 323
>pdb|3D3X|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype E
Catalytic Domain In Complex With Snap-25 Substrate
Peptide
pdb|3D3X|B Chain B, Crystal Structure Of Botulinum Neurotoxin Serotype E
Catalytic Domain In Complex With Snap-25 Substrate
Peptide
Length = 427
Score = 32.3 bits (72), Expect = 0.063, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 24 VYTEL-GDFEALESCARKLPDSSPLLKPMGEIF-VKYGLCEQAVYVFDKNKHK 74
+YT L D++ + S K+ S+PLL P ++F KYGL + A ++ N +K
Sbjct: 270 IYTNLLADYKKIASKLSKVQVSNPLLNPYKDVFEAKYGLDKDASGIYSVNINK 322
>pdb|1U6M|A Chain A, The Crystal Structure Of Acetyltransferase
pdb|1U6M|B Chain B, The Crystal Structure Of Acetyltransferase
pdb|1U6M|C Chain C, The Crystal Structure Of Acetyltransferase
pdb|1U6M|D Chain D, The Crystal Structure Of Acetyltransferase
Length = 199
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 1 MTTLVSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGL 60
M L+++A Y + Y++++ VY G+ + + D + +P+ E+F K+GL
Sbjct: 39 MIDLLAEATAYPTYRYGYQRIL-VYEHAGEVAGI-AVGYPAEDEKIIDEPLREVFKKHGL 96
Query: 61 CEQAVYVFDKNKHKSSQW 78
E V +F + + ++W
Sbjct: 97 AED-VRLFIEEETLPNEW 113
>pdb|2ZC0|A Chain A, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
pdb|2ZC0|B Chain B, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
pdb|2ZC0|C Chain C, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
pdb|2ZC0|D Chain D, Crystal Structure Of An Archaeal Alanine:glyoxylate
Aminotransferase
Length = 407
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 9 REYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVF 68
R Y+EK H L+ Y E D L++ LP++ KP+ +FV + L E A +
Sbjct: 293 RGYFEKYHLEGALLG-YKEKRDI-MLKALENHLPNAE-FTKPIAGMFVMFFLPEGADGIS 349
Query: 69 DKNKHKSSQWLTVVQDKP 86
N+ + + VV KP
Sbjct: 350 FANELMEREGVVVVPGKP 367
>pdb|2I0K|A Chain A, Cholesterol Oxidase From Brevibacterium Sterolicum-
His121ala Mutant
Length = 561
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 16 HCYEKLISVYTEL------GDFEALESCARKLPDSSPLLKPMGEIFV 56
H Y L ++ TEL G ALE+ R P +PLL +G F+
Sbjct: 165 HTYGSLSNLVTELTAVVWNGTTYALETYQRNDPRITPLLTNLGRCFL 211
>pdb|1I19|A Chain A, Crystal Structure Of Cholesterol Oxidase From B.Sterolicum
pdb|1I19|B Chain B, Crystal Structure Of Cholesterol Oxidase From B.Sterolicum
Length = 561
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 16 HCYEKLISVYTEL------GDFEALESCARKLPDSSPLLKPMGEIFV 56
H Y L ++ TEL G ALE+ R P +PLL +G F+
Sbjct: 165 HTYGSLSNLVTELTAVVWNGTTYALETYQRNDPRITPLLTNLGRCFL 211
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 11 YYEKCHCYEKLISVYTELGDFE 32
Y K H I++YT LGDFE
Sbjct: 30 YKMKGHTERGYITIYTNLGDFE 51
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,585,520
Number of Sequences: 62578
Number of extensions: 85853
Number of successful extensions: 185
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 184
Number of HSP's gapped (non-prelim): 14
length of query: 87
length of database: 14,973,337
effective HSP length: 55
effective length of query: 32
effective length of database: 11,531,547
effective search space: 369009504
effective search space used: 369009504
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)