BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy11102
         (87 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8BND3|WDR35_MOUSE WD repeat-containing protein 35 OS=Mus musculus GN=Wdr35 PE=2 SV=3
          Length = 1181

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 38/64 (59%)

Query: 7   QAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVY 66
            A +YY K    E+L   Y  L D+E LE+ A  LP++  LL  + ++FV+ G+CEQAV 
Sbjct: 818 NAVQYYVKGRNQERLAECYYMLEDYEGLETLANSLPENHKLLPEIAQMFVRVGMCEQAVS 877

Query: 67  VFDK 70
            F K
Sbjct: 878 AFLK 881


>sp|A6N6J5|WDR35_RAT WD repeat-containing protein 35 OS=Rattus norvegicus GN=Wdr35 PE=1
           SV=1
          Length = 1170

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 38/64 (59%)

Query: 7   QAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVY 66
            A +YY K    E+L   Y  L D+E LE+ A  LP++  LL  + ++FV+ G+CEQAV 
Sbjct: 807 NAVQYYVKGRNQERLAECYYMLEDYEGLENLANSLPENHKLLPEIAQMFVRVGMCEQAVS 866

Query: 67  VFDK 70
            F K
Sbjct: 867 AFLK 870


>sp|Q9P2L0|WDR35_HUMAN WD repeat-containing protein 35 OS=Homo sapiens GN=WDR35 PE=1 SV=3
          Length = 1181

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 38/64 (59%)

Query: 7   QAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVY 66
            A +YY +    E+L   Y  L D+E LE+ A  LP++  LL  + ++FV+ G+CEQAV 
Sbjct: 818 NAVQYYVQGRNQERLAECYYMLEDYEGLENLAISLPENHKLLPEIAQMFVRVGMCEQAVT 877

Query: 67  VFDK 70
            F K
Sbjct: 878 AFLK 881


>sp|P30995|BXE_CLOBU Botulinum neurotoxin type E OS=Clostridium butyricum PE=1 SV=2
          Length = 1251

 Score = 32.3 bits (72), Expect = 0.83,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 24  VYTEL-GDFEALESCARKLPDSSPLLKPMGEIF-VKYGLCEQAVYVFDKNKHK 74
           +YT L  D++ + S   K+  S+PLL P  ++F  KYGL + A  ++  N +K
Sbjct: 271 IYTNLLADYKKIASKLSKVQVSNPLLNPYKDVFEAKYGLDKDASGIYSVNINK 323


>sp|Q00496|BXE_CLOBO Botulinum neurotoxin type E OS=Clostridium botulinum PE=1 SV=2
          Length = 1251

 Score = 32.3 bits (72), Expect = 0.83,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 24  VYTEL-GDFEALESCARKLPDSSPLLKPMGEIF-VKYGLCEQAVYVFDKNKHK 74
           +YT L  D++ + S   K+  S+PLL P  ++F  KYGL + A  ++  N +K
Sbjct: 271 IYTNLLADYKKIASKLSKVQVSNPLLNPYKDVFEAKYGLDKDASGIYSVNINK 323


>sp|B3QMM2|AROB_CHLP8 3-dehydroquinate synthase OS=Chlorobaculum parvum (strain NCIB
          8327) GN=aroB PE=3 SV=1
          Length = 367

 Score = 31.6 bits (70), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 26/41 (63%)

Query: 34 LESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDKNKHK 74
          +ES A  +   +P++  +GE++   GL +++V +FD+N  K
Sbjct: 1  MESAASHIIVRTPVIDSIGELYETRGLGKKSVVLFDENTRK 41


>sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein At2g21090
           OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1
          Length = 597

 Score = 30.8 bits (68), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 16  HCYEKLISVYTELGDFEALESCARKLPDSSPL 47
           H +  LIS Y +LGD EA E    ++P+ +P+
Sbjct: 246 HIWTTLISGYAKLGDMEAAEKLFCEMPEKNPV 277


>sp|Q891R3|FTHS_CLOTE Formate--tetrahydrofolate ligase OS=Clostridium tetani (strain
          Massachusetts / E88) GN=fhs PE=3 SV=1
          Length = 559

 Score = 28.9 bits (63), Expect = 9.6,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 48 LKPMGEIFVKYGLCEQAVYVFDKNKHKSS 76
          +KP+GEI  KYG+ E  + ++ K K K S
Sbjct: 16 MKPIGEIAEKYGILEDELELYGKYKAKLS 44


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.133    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,601,160
Number of Sequences: 539616
Number of extensions: 1077234
Number of successful extensions: 2476
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2468
Number of HSP's gapped (non-prelim): 11
length of query: 87
length of database: 191,569,459
effective HSP length: 57
effective length of query: 30
effective length of database: 160,811,347
effective search space: 4824340410
effective search space used: 4824340410
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)