RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11102
(87 letters)
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.004
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 27 ELGDFEALESCARKL--PDSSPLL 48
E + L++ + KL DS+P L
Sbjct: 18 EKQALKKLQA-SLKLYADDSAPAL 40
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 31.3 bits (71), Expect = 0.020
Identities = 11/76 (14%), Positives = 21/76 (27%), Gaps = 12/76 (15%)
Query: 7 QAREYYEKCH--------CYEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEI 54
K Y ++ E G+ L + L P+ + +G
Sbjct: 323 DVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIY 382
Query: 55 FVKYGLCEQAVYVFDK 70
++ +A F K
Sbjct: 383 YLCVNKISEARRYFSK 398
Score = 25.6 bits (56), Expect = 2.6
Identities = 8/56 (14%), Positives = 15/56 (26%), Gaps = 3/56 (5%)
Query: 18 YEKLISVYTELGDFEALESCAR---KLPDSSPLLKPMGEIFVKYGLCEQAVYVFDK 70
Y ++ + + E L SS LL + + + K
Sbjct: 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTK 330
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 29.5 bits (66), Expect = 0.086
Identities = 8/72 (11%), Positives = 16/72 (22%), Gaps = 17/72 (23%)
Query: 7 QAREYYEKCH--------------CYEKLISVYTELGDF-EALESC--ARKLPDSSPLLK 49
+A Y++ K + F EA S + +
Sbjct: 133 KAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP 192
Query: 50 PMGEIFVKYGLC 61
+ + L
Sbjct: 193 TCYKKCIAQVLV 204
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.088
Identities = 12/79 (15%), Positives = 21/79 (26%), Gaps = 25/79 (31%)
Query: 9 REYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVF 68
R+ Y+ Y L+ + E L R D+ + G
Sbjct: 174 RDLYQT---YHVLVGDLIKFSA-ETLSELIRTTLDAEKVF-TQG---------------L 213
Query: 69 DKNKHKSSQWLTVVQDKPS 87
+ +WL + P
Sbjct: 214 N-----ILEWLENPSNTPD 227
Score = 26.2 bits (57), Expect = 1.6
Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 26/81 (32%)
Query: 28 LGDFEALESCARKLP--DSSPLLK----------PMGEIF-------------VKYGLCE 62
LG++ AL S A + ++ P E+ V +
Sbjct: 1764 LGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ 1823
Query: 63 QAV-YVFDKNKHKSSQWLTVV 82
+A+ YV ++ ++ + +V
Sbjct: 1824 EALQYVVERVGKRTGWLVEIV 1844
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 28.8 bits (65), Expect = 0.14
Identities = 13/77 (16%), Positives = 19/77 (24%), Gaps = 13/77 (16%)
Query: 7 QAREYYEKCH--------CYEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEI 54
+ C I EL L + KL P + +G
Sbjct: 40 MCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY 99
Query: 55 FVKYG-LCEQAVYVFDK 70
++ G E A K
Sbjct: 100 YLMVGHKNEHARRYLSK 116
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 27.8 bits (62), Expect = 0.42
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 11/75 (14%)
Query: 7 QAREYYEKC-------HCYEKLISVYTELGDF-EALESCARKL---PDSSPLLKPMGEIF 55
A E +K + Y + + + D E + L ++S + G++
Sbjct: 255 GAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMN 314
Query: 56 VKYGLCEQAVYVFDK 70
+QA FDK
Sbjct: 315 FILQNYDQAGKDFDK 329
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 27.1 bits (61), Expect = 0.55
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 6 SQAREYYEKCHCYEKLISVYTELGDFE-ALESCARKL---PDSSPLLKPMGEIFVKYGLC 61
+ EYY+K + + T+L + E L+ + P+ + + G+ +
Sbjct: 96 KKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155
Query: 62 EQAVYVFDK 70
AV + +
Sbjct: 156 PNAVKAYTE 164
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A 3iyv_A
Length = 1630
Score = 27.3 bits (60), Expect = 0.63
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 8 AREYYEKCHCYEKLISVYTELGDFEALESCARKL---PDSSPLLK 49
A Y + + K+I + E G + + A+K+ PD LL+
Sbjct: 475 ALSVYLRANVPNKVIQCFAETGQVQKIVLYAKKVGYTPDWIFLLR 519
Score = 24.6 bits (53), Expect = 6.1
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 52 GEIFVKYGLCEQAVYVFDK-NKHKSSQWLTV 81
I + L E+A +F K + + S+ + +
Sbjct: 1056 ANIAISNELFEEAFAIFRKFDVNTSAVQVLI 1086
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle,
phagocyte oxidase factor, SH3 domain, repeat, TPR
repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP:
a.118.8.1 PDB: 1wm5_A 1e96_B*
Length = 213
Score = 27.0 bits (60), Expect = 0.70
Identities = 7/48 (14%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 24 VYTELGDF-EALESCARKLPDSSPLLKPMGEIFVKYGLCEQAVYVFDK 70
+ + D+ AL++ + S + +G ++ +A F +
Sbjct: 15 LAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTR 62
>3hiu_A Uncharacterized protein; APC40011, XCC3681, xanthomonas campestris
PV. campestris STR. ATCC 33913, structural genomics,
PSI-2; HET: MSE; 1.85A {Xanthomonas campestris PV}
Length = 166
Score = 26.0 bits (57), Expect = 1.4
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 4 LVSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPD 43
+S A E+ E Y L+ G+ E + C L
Sbjct: 98 GISYAFEHLEIA-SYRALVVAARSAGEQEVAQICEDILQQ 136
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 25.8 bits (57), Expect = 1.8
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 5 VSQAREYYEKCHCYEKLISVYTELGDFEALE 35
A E + H E L +++ + E L
Sbjct: 697 FKLAIEAFTNAHDLESLFLLHSSFNNKEGLV 727
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 25.7 bits (56), Expect = 2.0
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 8/64 (12%)
Query: 4 LVSQAREYYEKC--------HCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIF 55
L+ A + +K L S++ +E E +K +
Sbjct: 315 LIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLH 374
Query: 56 VKYG 59
++YG
Sbjct: 375 LRYG 378
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 25.6 bits (57), Expect = 2.0
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
Query: 24 VYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYVFDK 70
+ GDFEA E +L PD++ +L + I + +++ +
Sbjct: 8 REYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTL 58
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 25.7 bits (56), Expect = 2.3
Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 18/73 (24%)
Query: 7 QAREYYEK--------------CHCYEKLISVYTELGDF----EALESCARKLPDSSPLL 48
+A + YE C+ K + G + + + +
Sbjct: 136 KAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ 195
Query: 49 KPMGEIFVKYGLC 61
+ + F+K GLC
Sbjct: 196 WSLKDYFLKKGLC 208
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 25.4 bits (56), Expect = 2.7
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 4/63 (6%)
Query: 12 YEKCHCYEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYV 67
++ GD+ A + K+ + L + E F+K G +A+
Sbjct: 140 SDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISD 199
Query: 68 FDK 70
Sbjct: 200 LKA 202
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 25.3 bits (56), Expect = 3.0
Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 4/62 (6%)
Query: 13 EKCHCYEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYVF 68
++ + D+ A + K+ + L + E F+K G +A+
Sbjct: 118 DEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL 177
Query: 69 DK 70
Sbjct: 178 KA 179
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan,
membrane-associated proteins; 1.90A {Xanthomonas
campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Length = 406
Score = 25.1 bits (54), Expect = 3.3
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 20 KLISVYTELGDFEALESCARKLPD 43
++V + L D E ++ P
Sbjct: 224 HAVAVGSMLFDPEFFVVASKAFPQ 247
>3ogh_B Protein YCIE; iron-binding, MCSG, four-helix-bundle, structural
genomics, protein structure initiative; HET: MSE; 1.65A
{Escherichia coli O6}
Length = 171
Score = 24.9 bits (54), Expect = 4.1
Identities = 8/40 (20%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 4 LVSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPD 43
+ E +E CY L++ GD ++ + L +
Sbjct: 101 ISGYVFEQFEIA-CYTSLLAAAKNAGDTASIPTIEAILNE 139
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 24.7 bits (54), Expect = 4.2
Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 18 YEKLISVYTELGDFE-ALESCARKL---PDSSPLLKPMGEIFVKYGLCEQAVYVFDK 70
+L Y + +++ A L P++ L+ E+ V G + A+ +++K
Sbjct: 57 ATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEK 113
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural
genomics, PSI-2, protein structure initiative; 2.80A
{Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 24.1 bits (53), Expect = 4.3
Identities = 5/51 (9%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 24 VYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYVFDK 70
+ + + + +L PD +G+++ + + A+ + +
Sbjct: 16 EHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQ 66
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 177
Score = 24.6 bits (53), Expect = 4.5
Identities = 6/33 (18%), Positives = 10/33 (30%)
Query: 16 HCYEKLISVYTELGDFEALESCARKLPDSSPLL 48
+E+LI G+ E + L
Sbjct: 35 ITWERLIQEALAQGNASLAEMIYQTQHSFDKLS 67
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 23.8 bits (52), Expect = 9.1
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 15/44 (34%)
Query: 7 QAREYYEKC--------------HCYEKLISVYTELGDF-EALE 35
A EY+ + L + ++ +G AL+
Sbjct: 321 TAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK 364
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD;
2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB:
1pjb_A* 1say_A
Length = 361
Score = 23.9 bits (53), Expect = 9.6
Identities = 6/9 (66%), Positives = 6/9 (66%)
Query: 46 PLLKPMGEI 54
PLL PM I
Sbjct: 127 PLLTPMSII 135
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA,
national project on protein structural and function
analyses; 2.71A {Thermus thermophilus}
Length = 369
Score = 23.6 bits (52), Expect = 9.7
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 46 PLLKPMGEI 54
PLL PM E+
Sbjct: 126 PLLVPMSEV 134
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.402
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,310,348
Number of extensions: 63360
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 34
Length of query: 87
Length of database: 6,701,793
Length adjustment: 55
Effective length of query: 32
Effective length of database: 5,166,138
Effective search space: 165316416
Effective search space used: 165316416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)