RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11102
         (87 letters)



>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment
          {Cow (Bos taurus) [TaxId: 9913]}
          Length = 336

 Score = 29.4 bits (66), Expect = 0.033
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 8  AREYYEKCHCYEKLISVYTELGDFEALESCARKL 41
          A+  Y     + +L S    LG+++A    ARK 
Sbjct: 33 AKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 66



 Score = 24.4 bits (53), Expect = 2.5
 Identities = 6/29 (20%), Positives = 10/29 (34%)

Query: 13 EKCHCYEKLISVYTELGDFEALESCARKL 41
               Y+    +Y  + +F  L S    L
Sbjct: 25 YDEKMYDAAKLLYNNVSNFGRLASTLVHL 53


>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 388

 Score = 25.8 bits (55), Expect = 0.87
 Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 4/64 (6%)

Query: 11  YYEKCHCYEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVY 66
                     L ++  E G+ E      RK     P+ +     +  +  + G  ++A+ 
Sbjct: 301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360

Query: 67  VFDK 70
            + +
Sbjct: 361 HYKE 364



 Score = 24.2 bits (51), Expect = 2.6
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 20 KLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIFVKYGLCEQAVYVFDK 70
          +L     + GDFEA E    +L    PD++ +L  +  I  +    +++ +    
Sbjct: 4  ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTL 58


>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 497

 Score = 24.7 bits (53), Expect = 1.6
 Identities = 9/75 (12%), Positives = 18/75 (24%), Gaps = 10/75 (13%)

Query: 6   SQAREYYEKC------HCYEKLISVYTELGDFEALESCARKL----PDSSPLLKPMGEIF 55
           S   +           HC   L  +          ES  R      P +      +  + 
Sbjct: 137 SAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILA 196

Query: 56  VKYGLCEQAVYVFDK 70
              G     ++ + +
Sbjct: 197 SSKGDHLTTIFYYCR 211


>d1dova_ a.24.9.1 (A:) alpha-catenin {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 181

 Score = 24.4 bits (53), Expect = 2.1
 Identities = 4/54 (7%), Positives = 17/54 (31%), Gaps = 4/54 (7%)

Query: 34  LESCARKLPDSSPLLKPMGEIFVKYGLCEQAV----YVFDKNKHKSSQWLTVVQ 83
           + +    L  + P+L    +  +++            ++ + +   +      Q
Sbjct: 126 MAAARGILQKNVPILYTASQACLQHPDVAAYKANRDLIYKQLQQAVTGISNAAQ 179


>d1azsb_ d.58.29.1 (B:) Adenylyl cyclase IIC1, domain C2a {Rat
           (Rattus norvegicus) [TaxId: 10116]}
          Length = 199

 Score = 24.1 bits (51), Expect = 2.7
 Identities = 8/53 (15%), Positives = 13/53 (24%), Gaps = 11/53 (20%)

Query: 5   VSQAREYYEKCHCYEKLISVYTELGDFEALESCARKLPDSSPLLKPMGEIFVK 57
           V+ A          +  ++           E  +  L          G I VK
Sbjct: 146 VNVASRMDSTGVLDKIQVT-----------EETSLILQTLGYTCTCRGIINVK 187


>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 290

 Score = 23.0 bits (48), Expect = 7.3
 Identities = 9/83 (10%), Positives = 23/83 (27%), Gaps = 10/83 (12%)

Query: 6   SQAREYYEKCHCYEKLISVYTELGDF-EALESCARKL---------PDSSPLLKPMGEIF 55
           S + ++ E      +  ++Y    +   A +S  +            ++        + F
Sbjct: 28  SDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCF 87

Query: 56  VKYGLCEQAVYVFDKNKHKSSQW 78
              G    AV   +      +  
Sbjct: 88  KSGGNSVNAVDSLENAIQIFTHR 110


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0496    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 328,846
Number of extensions: 12877
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 12
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.4 bits)