BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11104
(70 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8BND3|WDR35_MOUSE WD repeat-containing protein 35 OS=Mus musculus GN=Wdr35 PE=2
SV=3
Length = 1181
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/45 (66%), Positives = 41/45 (91%)
Query: 1 MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
MF YLSKKIA+PNN K+ C++W+++QG+IA GG+DGLLKVL+L+T
Sbjct: 1 MFFYLSKKIAVPNNVKLKCISWNKDQGFIACGGEDGLLKVLRLET 45
>sp|A6N6J5|WDR35_RAT WD repeat-containing protein 35 OS=Rattus norvegicus GN=Wdr35
PE=1 SV=1
Length = 1170
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/45 (66%), Positives = 41/45 (91%)
Query: 1 MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
MF YLSKKIA+PNN K+ C++W+++QG+IA GG+DGLLKVL+L+T
Sbjct: 1 MFFYLSKKIAVPNNVKLKCISWNKDQGFIACGGEDGLLKVLRLET 45
>sp|Q9P2L0|WDR35_HUMAN WD repeat-containing protein 35 OS=Homo sapiens GN=WDR35 PE=1
SV=3
Length = 1181
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/45 (68%), Positives = 40/45 (88%)
Query: 1 MFIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
MF YLSKKI+IPNN K+ C++W++ QG+IA GG+DGLLKVLKL+T
Sbjct: 1 MFFYLSKKISIPNNVKLQCVSWNKEQGFIACGGEDGLLKVLKLET 45
>sp|P38328|ARPC1_YEAST Actin-related protein 2/3 complex subunit 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ARC40 PE=1
SV=1
Length = 384
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 4 YLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVL 41
++SK I P + +NCL+WH N +A GG DG ++V
Sbjct: 143 WVSKHIKKPIKSTINCLSWHANGVLLAAGGTDGFMRVF 180
>sp|O74399|ERB1_SCHPO Ribosome biogenesis protein erb1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=erb1 PE=1 SV=2
Length = 740
Score = 35.8 bits (81), Expect = 0.079, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
+ I + +V CL+ H + W+A GGDDG+L++ ++ T
Sbjct: 378 VFIGHKGRVRCLSVHVSGNWLASGGDDGVLRIWEVMT 414
>sp|Q7ZX22|WDR24_XENLA WD repeat-containing protein 24 OS=Xenopus laevis GN=wdr24 PE=2
SV=1
Length = 780
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 7 KKIAIPNNTKVNCLAWH-QNQGWIAVGGDDGLLKVLKLDT 45
+++ +N V C WH +++GW+A GG D ++KV ++T
Sbjct: 195 ERMFTAHNGPVFCCDWHPEDRGWLATGGRDKMVKVWDMNT 234
>sp|Q5ZMV9|WDR24_CHICK WD repeat-containing protein 24 OS=Gallus gallus GN=WDR24 PE=2 SV=1
Length = 705
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 7 KKIAIPNNTKVNCLAWH-QNQGWIAVGGDDGLLKVLKLDT 45
+++ +N V C WH +++GW+A GG D ++KV ++T
Sbjct: 116 ERMFTAHNGPVFCCDWHPEDRGWLATGGRDKMVKVWDMNT 155
>sp|Q8CFJ9|WDR24_MOUSE WD repeat-containing protein 24 OS=Mus musculus GN=Wdr24 PE=2 SV=1
Length = 790
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 7 KKIAIPNNTKVNCLAWH-QNQGWIAVGGDDGLLKVLKLDT 45
+++ +N V C WH +++GW+A GG D ++KV + T
Sbjct: 200 ERMFTAHNGPVFCCDWHPEDRGWLATGGRDKMVKVWDMTT 239
>sp|Q96S15|WDR24_HUMAN WD repeat-containing protein 24 OS=Homo sapiens GN=WDR24 PE=1 SV=1
Length = 920
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 7 KKIAIPNNTKVNCLAWH-QNQGWIAVGGDDGLLKVLKLDT 45
+++ +N V C WH +++GW+A GG D ++KV + T
Sbjct: 330 ERMFTAHNGPVFCCDWHPEDRGWLATGGRDKMVKVWDMTT 369
>sp|Q7ZVL2|WDR24_DANRE WD repeat-containing protein 24 OS=Danio rerio GN=wdr24 PE=2 SV=1
Length = 779
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 17 VNCLAWH-QNQGWIAVGGDDGLLKVLKLDT 45
V C WH +++GW+A GG D ++KV + T
Sbjct: 204 VFCCDWHPEDRGWLATGGRDKMVKVWDMST 233
>sp|Q8QFR2|HIRA_XENLA Protein HIRA OS=Xenopus laevis GN=hira PE=1 SV=2
Length = 1013
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLK 42
VNC+ W N ++A GGDD L+ V K
Sbjct: 73 VNCVRWSNNGAYLASGGDDKLIMVWK 98
>sp|A6ZN74|RTC1_YEAS7 Restriction of telomere capping protein 1 OS=Saccharomyces
cerevisiae (strain YJM789) GN=RTC1 PE=3 SV=1
Length = 1335
Score = 32.7 bits (73), Expect = 0.61, Method: Composition-based stats.
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 19 CLAWHQNQGWIAVGGDDG 36
CL WH NQ +IA GG DG
Sbjct: 374 CLNWHPNQEYIATGGRDG 391
>sp|C7GV13|RTC1_YEAS2 Restriction of telomere capping protein 1 OS=Saccharomyces
cerevisiae (strain JAY291) GN=RTC1 PE=3 SV=1
Length = 1342
Score = 32.7 bits (73), Expect = 0.61, Method: Composition-based stats.
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 19 CLAWHQNQGWIAVGGDDG 36
CL WH NQ +IA GG DG
Sbjct: 374 CLNWHPNQEYIATGGRDG 391
>sp|Q08281|RTC1_YEAST Restriction of telomere capping protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RTC1 PE=1
SV=2
Length = 1341
Score = 32.7 bits (73), Expect = 0.61, Method: Composition-based stats.
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 19 CLAWHQNQGWIAVGGDDG 36
CL WH NQ +IA GG DG
Sbjct: 374 CLNWHPNQEYIATGGRDG 391
>sp|C8ZHH9|RTC1_YEAS8 Restriction of telomere capping protein 1 OS=Saccharomyces
cerevisiae (strain Lalvin EC1118 / Prise de mousse)
GN=RTC1 PE=3 SV=1
Length = 1342
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 19 CLAWHQNQGWIAVGGDDG 36
CL WH NQ +IA GG DG
Sbjct: 374 CLNWHPNQEYIATGGRDG 391
>sp|B3LIS9|RTC1_YEAS1 Restriction of telomere capping protein 1 OS=Saccharomyces
cerevisiae (strain RM11-1a) GN=RTC1 PE=3 SV=1
Length = 1342
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 19 CLAWHQNQGWIAVGGDDG 36
CL WH NQ +IA GG DG
Sbjct: 374 CLNWHPNQEYIATGGRDG 391
>sp|Q54J37|STRN_DICDI Striatin homolog OS=Dictyostelium discoideum GN=strn PE=3 SV=1
Length = 827
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 20/28 (71%)
Query: 14 NTKVNCLAWHQNQGWIAVGGDDGLLKVL 41
+ ++C+ +H N+G+ A GG D ++++L
Sbjct: 799 DESIHCIKYHPNKGYFASGGADSVIRIL 826
>sp|A8WVX8|EIF3I_CAEBR Eukaryotic translation initiation factor 3 subunit I
OS=Caenorhabditis briggsae GN=eif-3.I PE=3 SV=1
Length = 327
Score = 32.7 bits (73), Expect = 0.64, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLD 44
+N +AWH + IA GG+DG +++ + D
Sbjct: 290 INTMAWHPSGSIIATGGEDGYVRIQEFD 317
>sp|A7TR10|RTC1_VANPO Restriction of telomere capping protein 1 OS=Vanderwaltozyma
polyspora (strain ATCC 22028 / DSM 70294) GN=RTC1 PE=3
SV=1
Length = 1313
Score = 32.7 bits (73), Expect = 0.66, Method: Composition-based stats.
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 19 CLAWHQNQGWIAVGGDDG 36
CL WH NQ +IA GG DG
Sbjct: 346 CLNWHPNQDYIATGGRDG 363
>sp|Q965S8|EIF3I_CAEEL Eukaryotic translation initiation factor 3 subunit I
OS=Caenorhabditis elegans GN=eif-3.I PE=3 SV=2
Length = 327
Score = 32.7 bits (73), Expect = 0.76, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLD 44
+N +AWH + IA GG+DG +++ + D
Sbjct: 290 INTMAWHPSGTIIATGGEDGYIRIQEFD 317
>sp|P79987|HIRA_CHICK Protein HIRA OS=Gallus gallus GN=HIRA PE=1 SV=2
Length = 1019
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLK 42
VNC+ W N ++A GGDD L+ V K
Sbjct: 73 VNCVRWSNNGVYLASGGDDKLIMVWK 98
>sp|O42611|HIRA_TAKRU Protein HIRA OS=Takifugu rubripes GN=hira PE=2 SV=1
Length = 1025
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLK 42
VNC+ W N ++A GGDD L+ V K
Sbjct: 73 VNCVRWSNNGLYLASGGDDKLVMVWK 98
>sp|Q6FVJ1|RTC1_CANGA Restriction of telomere capping protein 1 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=RTC1 PE=3 SV=1
Length = 1336
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 19 CLAWHQNQGWIAVGGDDG 36
CL WH +Q +IA GG DG
Sbjct: 401 CLNWHPHQDYIATGGRDG 418
>sp|Q810D6|GRWD1_MOUSE Glutamate-rich WD repeat-containing protein 1 OS=Mus musculus
GN=Grwd1 PE=2 SV=2
Length = 446
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKL 43
A ++ VN ++W + + ++ GGDDG LKV L
Sbjct: 304 ATAHDGDVNVISWSRREPFLLSGGDDGALKVWDL 337
>sp|O60097|SPT8_SCHPO Transcription factor spt8 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=spt8 PE=3 SV=1
Length = 526
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 9 IAIPNNTKVNCLAWHQNQGWIAVGGDDGLLK 39
+AIP T +N A+ + W+ GG+DG ++
Sbjct: 113 LAIPMATSINAFAFTSDLKWLFTGGEDGYIR 143
>sp|Q5XI13|GRWD1_RAT Glutamate-rich WD repeat-containing protein 1 OS=Rattus norvegicus
GN=Grwd1 PE=2 SV=1
Length = 445
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKL 43
A ++ VN ++W + + ++ GGDDG LKV L
Sbjct: 303 AAAHDGDVNVISWSRREPFLLSGGDDGTLKVWDL 336
>sp|Q15061|WDR43_HUMAN WD repeat-containing protein 43 OS=Homo sapiens GN=WDR43 PE=1 SV=3
Length = 677
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 6 SKKIAIPNNTKVNCLAWHQNQGWIAVGGDD 35
SK I+ ++ +VNC+ WHQ+ G + DD
Sbjct: 118 SKLISGGHDNRVNCIQWHQDSGCLYSCSDD 147
>sp|Q9BQ67|GRWD1_HUMAN Glutamate-rich WD repeat-containing protein 1 OS=Homo sapiens
GN=GRWD1 PE=1 SV=1
Length = 446
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKL 43
A ++ VN ++W + + ++ GGDDG LK+ L
Sbjct: 304 ATAHDGDVNVISWSRREPFLLSGGDDGALKIWDL 337
>sp|Q61666|HIRA_MOUSE Protein HIRA OS=Mus musculus GN=Hira PE=1 SV=3
Length = 1015
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
VNC+ W + ++A GGDD L+ V K T
Sbjct: 73 VNCVRWSNSGMYLASGGDDKLIMVWKRAT 101
>sp|P54198|HIRA_HUMAN Protein HIRA OS=Homo sapiens GN=HIRA PE=1 SV=2
Length = 1017
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
VNC+ W + ++A GGDD L+ V K T
Sbjct: 73 VNCVRWSNSGMYLASGGDDKLIMVWKRAT 101
>sp|P0CS30|CIAO1_CRYNJ Probable cytosolic iron-sulfur protein assembly protein 1
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=CIA1 PE=3 SV=1
Length = 440
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKV 40
V CLAW + W+A GGD+G +++
Sbjct: 283 VWCLAWSPDGRWLASGGDNGGIRL 306
>sp|P0CS31|CIAO1_CRYNB Probable cytosolic iron-sulfur protein assembly protein 1
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=CIA1 PE=3 SV=1
Length = 440
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKV 40
V CLAW + W+A GGD+G +++
Sbjct: 283 VWCLAWSPDGRWLASGGDNGGIRL 306
>sp|P42000|UTP18_CAEEL U3 small nucleolar RNA-associated protein 18 homolog
OS=Caenorhabditis elegans GN=B0280.9 PE=3 SV=1
Length = 429
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKL 43
T C+ + N G++AVG DDG L V ++
Sbjct: 395 THARCVEFSPNGGYMAVGNDDGRLHVFEI 423
>sp|Q7Z5U6|WDR53_HUMAN WD repeat-containing protein 53 OS=Homo sapiens GN=WDR53 PE=2 SV=1
Length = 358
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLD 44
N ++NCL+ +Q + +A D G +K+L L+
Sbjct: 93 NEEEINCLSLNQTENLLASADDSGAIKILDLE 124
>sp|P14197|AAC3_DICDI WD repeat-containing protein AAC3 OS=Dictyostelium discoideum
GN=AAC3 PE=2 SV=2
Length = 478
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 2 FIYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLD 44
F S K I N K +AW+ N IA G DG+++V D
Sbjct: 153 FSECSTKDFIGNKKKSTSVAWNANGTKIASSGSDGIVRVWNFD 195
>sp|Q1JQD2|GRWD1_BOVIN Glutamate-rich WD repeat-containing protein 1 OS=Bos taurus
GN=GRWD1 PE=2 SV=1
Length = 446
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKL 43
A ++ VN + W + ++ GGDDG LKV L
Sbjct: 304 ATAHDGDVNVINWSHREPFLLSGGDDGALKVWDL 337
>sp|Q9DB94|WDR53_MOUSE WD repeat-containing protein 53 OS=Mus musculus GN=Wdr53 PE=2 SV=1
Length = 358
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLT 49
N ++NCL+ ++ + +A D G +K+L L+ +T
Sbjct: 93 NEEEINCLSLNETESLLASADDSGAIKILDLEKKKVT 129
>sp|Q5U249|ELYS_XENLA Protein ELYS OS=Xenopus laevis GN=ahctf1 PE=1 SV=1
Length = 2408
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 4 YLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTV 46
+L ++A P T V+CL++ +AVG DG + + T+
Sbjct: 210 HLCLQLAAPTGTTVSCLSYISRTNQLAVGYSDGYFSLWNMKTL 252
>sp|Q9LXN4|HIRA_ARATH Protein HIRA OS=Arabidopsis thaliana GN=HIRA PE=1 SV=2
Length = 1024
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKV 40
VNC+ W +N ++A G DD ++++
Sbjct: 69 VNCVRWAKNSRYVASGSDDQVIQI 92
>sp|P38915|SPT8_YEAST Transcription factor SPT8 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SPT8 PE=1 SV=1
Length = 602
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLK-LDTVSLTIMIILFQERNLQDKL 64
AIP T VN LA + ++ +GG DG ++ L+T+ + + + Q+ +L + +
Sbjct: 171 AIPIQTHVNALAVSRGLKYLFLGGSDGYIRKYDLLNTLEGKLSLTILQKHSLAESI 226
>sp|Q5RD06|POC1B_PONAB POC1 centriolar protein homolog B OS=Pongo abelii GN=POC1B PE=2
SV=1
Length = 451
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKL 43
VNC+++H + ++ DG LK+L L
Sbjct: 231 VNCISFHPSDNYLVTASSDGTLKILDL 257
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.141 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,224,717
Number of Sequences: 539616
Number of extensions: 714963
Number of successful extensions: 2447
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2406
Number of HSP's gapped (non-prelim): 47
length of query: 70
length of database: 191,569,459
effective HSP length: 42
effective length of query: 28
effective length of database: 168,905,587
effective search space: 4729356436
effective search space used: 4729356436
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)