RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11104
(70 letters)
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription,
hypothetica protein, preinitiation complex, yeast RNA
polymerase III; 3.2A {Saccharomyces cerevisiae}
Length = 524
Score = 38.3 bits (88), Expect = 5e-05
Identities = 7/36 (19%), Positives = 12/36 (33%), Gaps = 3/36 (8%)
Query: 12 PNNTKVNCLAWHQNQ---GWIAVGGDDGLLKVLKLD 44
+ + C W++ A GLL + L
Sbjct: 481 AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516
Score = 27.1 bits (59), Expect = 0.35
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKV 40
+ + + + G DG L +
Sbjct: 400 ITAIGVSRLHPMVLAGSADGSLII 423
Score = 24.5 bits (52), Expect = 3.4
Identities = 3/34 (8%), Positives = 11/34 (32%), Gaps = 1/34 (2%)
Query: 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
++ + + + + G +G + L
Sbjct: 264 LADSLITTFDFL-SPTTVVCGFKNGFVAEFDLTD 296
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis
complex; 2.40A {Saccharomyces cerevisiae}
Length = 902
Score = 36.8 bits (84), Expect = 2e-04
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTI 50
++K A+ Q +A+ G + + V + I
Sbjct: 17 SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI 53
Score = 32.5 bits (73), Expect = 0.005
Identities = 7/39 (17%), Positives = 17/39 (43%)
Query: 15 TKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMII 53
K+ + + W+ +G +G + V +D L+ +
Sbjct: 99 GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKL 137
Score = 29.1 bits (64), Expect = 0.075
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKV 40
V +H N I +D L
Sbjct: 214 VIQSLYHPNSLHIITIHEDNSLVF 237
Score = 26.4 bits (57), Expect = 0.72
Identities = 7/43 (16%), Positives = 19/43 (44%)
Query: 3 IYLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
+ LS+ + V+ +++ +AV + G + + K +
Sbjct: 477 VNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEV 519
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase,
spliceosome, DNA damage, D repair, mRNA processing,
nucleus; 2.60A {Saccharomyces cerevisiae}
Length = 343
Score = 33.6 bits (76), Expect = 0.002
Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQE 57
++ + + H++ +A+ DG+L V + S F
Sbjct: 167 AKSDVEYSSGVLHKDSLLLALYSPDGILDV--YNLSSPDQASSRFPV 211
Score = 24.3 bits (52), Expect = 3.7
Identities = 4/21 (19%), Positives = 9/21 (42%)
Query: 17 VNCLAWHQNQGWIAVGGDDGL 37
+ + + N W+ V D +
Sbjct: 217 IKEVKFADNGYWMVVECDQTV 237
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller;
3.30A {Saccharomyces cerevisiae}
Length = 416
Score = 32.7 bits (75), Expect = 0.003
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 10 AIPNNTKVNCLAWHQNQGWIAVGGDDGLLKV 40
++ ++K N L W N IA D+G L++
Sbjct: 63 SLQVDSKFNDLDWSHNNKIIAGALDNGSLEL 93
Score = 25.8 bits (57), Expect = 1.2
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 17 VNCLAWHQNQG-WIAVGGDDGLLKV 40
V LAW+Q+ A G +
Sbjct: 168 VISLAWNQSLAHVFASAGSSNFASI 192
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD
repeat, scaffold protein, ATP- binding, endosome, golgi
apparatus; 1.80A {Saccharomyces cerevisiae}
Length = 437
Score = 32.8 bits (75), Expect = 0.004
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS 47
++ V + N AV DG + VLK++
Sbjct: 111 SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQ 144
Score = 29.8 bits (67), Expect = 0.046
Identities = 3/24 (12%), Positives = 11/24 (45%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKV 40
V+ + + + +G G++ +
Sbjct: 217 VSSICIDEECCVLILGTTRGIIDI 240
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 32.0 bits (73), Expect = 0.006
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKV 40
V + + WI VG DD ++V
Sbjct: 58 VRAGKFIARKNWIIVGSDDFRIRV 81
Score = 27.4 bits (61), Expect = 0.29
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKV 40
V + +H + W+ G +++
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVEI 39
Score = 27.0 bits (60), Expect = 0.38
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKV 40
+ +A H + ++ G DD +K+
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKL 123
Score = 25.8 bits (57), Expect = 1.2
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKV 40
V+ +H I G +DG LK+
Sbjct: 231 VSFAVFHPTLPIIISGSEDGTLKI 254
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY
crystallography, beta-propeller, structure, mRNA export,
NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens}
PDB: 3fmo_A* 3fmp_A* 3fhc_A
Length = 434
Score = 31.0 bits (69), Expect = 0.019
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMI 52
+P+ V + W +AVG +G + ++
Sbjct: 189 LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIP 230
Score = 28.7 bits (63), Expect = 0.099
Identities = 8/42 (19%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 5 LSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTV 46
+P + LA G + GG G L++ +
Sbjct: 28 FDSPEELPKER-SSLLAVSNKYGLVFAGGASG-LQIFPTKNL 67
Score = 28.0 bits (61), Expect = 0.21
Identities = 5/45 (11%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 7 KKIAIPNNTKVNCLAWHQNQGWIAV----GGDDGLLKVLKLDTVS 47
+ + +P ++ LA + ++ ++ + T S
Sbjct: 85 QGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFS 129
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor,
phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila
melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A*
3gfc_A 3cfs_B 3cfv_B
Length = 430
Score = 30.5 bits (69), Expect = 0.028
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 17 VNCLAWHQNQGWI-AVGGDDGLLKV 40
VNCL+++ +I A G D + +
Sbjct: 280 VNCLSFNPYSEFILATGSADKTVAL 304
Score = 28.2 bits (63), Expect = 0.17
Identities = 7/26 (26%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 16 KVNCLAWHQNQGW-IAVGGDDGLLKV 40
K++ +W+ N+ W I +D +++V
Sbjct: 380 KISDFSWNPNEPWIICSVSEDNIMQV 405
Score = 27.4 bits (61), Expect = 0.31
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 17 VNCLAWHQNQGWI-AVGGDDGLLKV 40
V +AWH + DD L +
Sbjct: 234 VEDVAWHLLHESLFGSVADDQKLMI 258
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta
transducin repeat all beta, signaling protein; 1.10A
{Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A
2i3s_A 2i3t_A
Length = 342
Score = 30.2 bits (68), Expect = 0.032
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKV 40
VN + + ++ G DG++
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISC 277
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor,
actin-binding, ATP-binding, cytoskeleton, nucleot
binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces
pombe}
Length = 377
Score = 29.3 bits (66), Expect = 0.056
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 4 YLSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKV 40
++SK + P + + L WH N +A G D V
Sbjct: 136 WVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYV 172
Score = 28.9 bits (65), Expect = 0.078
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
+ W N+ AVG ++ V +
Sbjct: 103 ATFVRWSPNEDKFAVGSGARVISVCYFEQ 131
Score = 26.6 bits (59), Expect = 0.52
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
V+ + + + +A G D + +
Sbjct: 208 VHAVGFSPSGNALAYAGHDSSVTIAYPSA 236
Score = 24.7 bits (54), Expect = 3.1
Identities = 4/19 (21%), Positives = 7/19 (36%)
Query: 17 VNCLAWHQNQGWIAVGGDD 35
+ L W +A G +
Sbjct: 254 LRSLLWANESAIVAAGYNY 272
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF,
cofilin, structural genomics, PSI, protein structure
initiative; 1.70A {Caenorhabditis elegans} SCOP:
b.69.4.1 b.69.4.1 PDB: 1pev_A
Length = 611
Score = 29.5 bits (67), Expect = 0.059
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 7 KKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
K +P + +C+A ++ ++AVGG D + V KL
Sbjct: 441 KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG 479
Score = 26.4 bits (59), Expect = 0.79
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL 54
KV C++W + +A G D + V ++ S +II
Sbjct: 538 KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK 576
Score = 26.0 bits (58), Expect = 1.0
Identities = 2/24 (8%), Positives = 8/24 (33%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKV 40
+ L+ + + +G +
Sbjct: 327 ITALSSSADGKTLFSADAEGHINS 350
Score = 25.2 bits (56), Expect = 1.6
Identities = 2/29 (6%), Positives = 8/29 (27%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
L + + +G + + +
Sbjct: 285 DQQLGIIWTKQALVSISANGFINFVNPEL 313
Score = 24.5 bits (54), Expect = 2.9
Identities = 2/29 (6%), Positives = 9/29 (31%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
+ +A+ N ++ + +
Sbjct: 494 ITSVAFSNNGAFLVATDQSRKVIPYSVAN 522
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha
isoform; holoenzyme, PR55, WD repeat, hydrolase, iron,
manganese binding, methylation, phosphoprotein, protein
phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Length = 447
Score = 29.3 bits (65), Expect = 0.066
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 14 NTKVNCLAWHQNQGWIAVGGDDGL 37
N K+ AWH + IAV + L
Sbjct: 416 NKKILHTAWHPKENIIAVATTNNL 439
Score = 25.1 bits (54), Expect = 1.9
Identities = 3/25 (12%), Positives = 8/25 (32%), Gaps = 1/25 (4%)
Query: 17 VNCLAWHQNQG-WIAVGGDDGLLKV 40
+ +H N G +++
Sbjct: 229 ITAAEFHPNSCNTFVYSSSKGTIRL 253
Score = 24.7 bits (53), Expect = 3.4
Identities = 5/49 (10%), Positives = 15/49 (30%)
Query: 18 NCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQERNLQDKLPP 66
W+ + + G + ++ +T + + + L P
Sbjct: 346 FECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKP 394
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A
{Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Length = 355
Score = 29.2 bits (65), Expect = 0.069
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
V + W + +AV D L V ++
Sbjct: 243 VVDMKWSTDGSKLAVVSDKWTLHVFEIFN 271
Score = 28.1 bits (62), Expect = 0.16
Identities = 4/38 (10%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLT 49
+ V ++Q+Q + + ++ + V+
Sbjct: 17 HVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI 53
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A
{Homo sapiens}
Length = 368
Score = 28.8 bits (65), Expect = 0.083
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKV 40
VN +A+H G +A G DG
Sbjct: 276 VNGIAFHPVHGTLATVGSDGRFSF 299
Score = 27.6 bits (62), Expect = 0.29
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
V + W + + D K+ L +
Sbjct: 89 VLDVCWSDDGSKVFTASCDKTAKMWDLSS 117
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A
{Saccharomyces cerevisiae}
Length = 313
Score = 28.6 bits (65), Expect = 0.12
Identities = 5/27 (18%), Positives = 13/27 (48%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKL 43
+N + + + + GG D ++ + L
Sbjct: 62 LNSVCYDSEKELLLFGGKDTMINGVPL 88
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller,
structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1
PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C*
2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Length = 372
Score = 27.6 bits (62), Expect = 0.25
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKV 40
V L WH N +A G D ++
Sbjct: 145 VLSLDWHPNSVLLAAGSCDFKCRI 168
Score = 26.8 bits (60), Expect = 0.52
Identities = 5/29 (17%), Positives = 17/29 (58%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
++C AW++++ IA+ ++ + + +
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEKSG 39
Score = 25.7 bits (57), Expect = 1.4
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKV 40
C+ W N+ AVG ++ +
Sbjct: 99 ARCVRWAPNEKKFAVGSGSRVISI 122
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX,
D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 401
Score = 27.6 bits (62), Expect = 0.29
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKV 40
V + W + +++VG +GL+ +
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDI 160
Score = 26.4 bits (59), Expect = 0.68
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKV 40
V LAW + +A GG+D ++++
Sbjct: 220 VCGLAWRSDGLQLASGGNDNVVQI 243
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 27.5 bits (61), Expect = 0.32
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
V+C + ++A G +DG +K+++L
Sbjct: 964 VSCCCLSPHLEYVAFGDEDGAIKIIELPN 992
Score = 26.3 bits (58), Expect = 0.70
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
VN + + +A DG L++ + +
Sbjct: 746 VNHCRFSPDDELLASCSADGTLRLWDVRS 774
Score = 25.9 bits (57), Expect = 0.94
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
V C A+ + +IA D +K+ T
Sbjct: 660 VLCCAFSSDDSYIATCSADKKVKIWDSAT 688
Score = 25.6 bits (56), Expect = 1.4
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
V + Q+ IA G D L+V K +T
Sbjct: 618 VYHACFSQDGQRIASCGADKTLQVFKAET 646
Score = 25.2 bits (55), Expect = 2.0
Identities = 5/33 (15%), Positives = 12/33 (36%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLT 49
V+ + + + DD ++V + V
Sbjct: 885 VHGVMFSPDGSSFLTASDDQTIRVWETKKVCKN 917
Score = 25.2 bits (55), Expect = 2.0
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTVS 47
V C +W + I V + KVL D +
Sbjct: 801 VKCCSWSADGDKIIVAAKN---KVLLFDIHT 828
Score = 24.8 bits (54), Expect = 2.7
Identities = 4/29 (13%), Positives = 12/29 (41%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
V + + + + +D +++V T
Sbjct: 1006 VRHIQFTADGKTLISSSEDSVIQVWNWQT 1034
Score = 24.4 bits (53), Expect = 3.3
Identities = 5/29 (17%), Positives = 8/29 (27%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
V A + + D K+ D
Sbjct: 1088 VLSCAISSDATKFSSTSADKTAKIWSFDL 1116
Score = 24.0 bits (52), Expect = 5.1
Identities = 3/27 (11%), Positives = 11/27 (40%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKL 43
+ + + + G+L +L++
Sbjct: 1221 LKKIHVSPDFRTYVTVDNLGILYILQV 1247
Score = 23.6 bits (51), Expect = 8.0
Identities = 3/29 (10%), Positives = 12/29 (41%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
+ + +N+ + + L+++ T
Sbjct: 925 EIDVVFQENETMVLAVDNIRGLQLIAGKT 953
Score = 23.2 bits (50), Expect = 8.4
Identities = 0/24 (0%), Positives = 6/24 (25%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKV 40
+ + + +++
Sbjct: 843 IQYCDFSPYDHLAVIALSQYCVEL 866
>1k32_A Tricorn protease; protein degradation, substrate gating, serine
protease, beta propeller, proteasome, hydrolase; 2.00A
{Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1
b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Length = 1045
Score = 27.5 bits (60), Expect = 0.36
Identities = 8/47 (17%), Positives = 17/47 (36%)
Query: 6 SKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMI 52
+ N V + +N + V D + + L+T T++
Sbjct: 370 KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE 416
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori
complex, nuclear pore complex, macromolecular assembly,
MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A
3f3p_A 3ewe_A
Length = 351
Score = 27.3 bits (61), Expect = 0.36
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 17 VNCLAWHQNQGW---IAVGGDDGLLKVLKLDTVSLTIMIIL 54
CL+W ++ +AV + + + L + L
Sbjct: 170 DFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKL 210
Score = 25.0 bits (55), Expect = 2.6
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
V ++W+ ++ GDDG +++ K
Sbjct: 309 VWSVSWNLTGTILSSAGDDGKVRLWKATY 337
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat,
biosynthetic prote structural genomics, structural
genomics consortium; 1.70A {Homo sapiens}
Length = 345
Score = 26.8 bits (60), Expect = 0.44
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 14 NTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
+++ LAW+ +A G D +++ +
Sbjct: 16 DSRCWFLAWNPAGTLLASCGGDRRIRIWGTEG 47
Score = 26.0 bits (58), Expect = 0.87
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
+ +AW Q G +A D ++V + D
Sbjct: 255 IYDIAWCQLTGALATACGDDAIRVFQEDP 283
Score = 24.8 bits (55), Expect = 2.6
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
V + WH +Q +A D +K+ + +
Sbjct: 153 VKHVVWHPSQELLASASYDDTVKLYREEE 181
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat
protein TRM82; S-adenosyl-L-methionine, tRNA processing,
phosphorylation, M7G, spout MT, WD repeat; 2.40A
{Saccharomyces cerevisiae}
Length = 450
Score = 27.0 bits (59), Expect = 0.52
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 17 VNCLAWHQNQGW-IAVGGDDGLLKVLKLDT 45
+ L ++ IA D L V +D
Sbjct: 105 IRNLRLTSDESRLIACADSDKSLLVFDVDK 134
Score = 26.2 bits (57), Expect = 1.00
Identities = 3/24 (12%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKV 40
V+ + ++ + G D +
Sbjct: 244 VSSICCGKD-YLLLSAGGDDKIFA 266
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic
cleavage, mRNA transport, nuclear pore complex, nucleus,
phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Length = 316
Score = 26.5 bits (59), Expect = 0.55
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
V ++W +AV G D + + K
Sbjct: 265 VWHVSWSITANILAVSGGDNKVTLWKESV 293
Score = 24.5 bits (54), Expect = 2.8
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 17 VNCLAWHQNQG----WIAVGGDDGLLKVLKLDTVS 47
V +AW + G IA DG + + D S
Sbjct: 215 VRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDAS 249
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit;
lissencephaly, platelet activacting factor, regulator of
cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Length = 410
Score = 26.0 bits (58), Expect = 0.81
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKV 40
V L +H+ ++ G D +KV
Sbjct: 383 VTSLDFHKTAPYVVTGSVDQTVKV 406
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31;
beta propeller, alpha solenoid; 2.35A {Saccharomyces
cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Length = 297
Score = 26.0 bits (58), Expect = 0.91
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
+ +W + +A+ G D + + K +
Sbjct: 257 LWRASWSLSGNVLALSGGDNKVTLWKENL 285
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type
2 promoters, transcription, hypothetica protein,
preinitiation complex, yeast RNA polymerase III; 3.2A
{Saccharomyces cerevisiae}
Length = 588
Score = 26.3 bits (57), Expect = 0.93
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLD 44
++ +C W+ + I VG +DG L+ +
Sbjct: 128 SSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159
>3tia_A Neuraminidase; 6-bladed beta-propeller, calcium binding,
glycosylation, ANT hydrolase-hydrolase inhibitor
complex; HET: NAG BMA MAN LNV; 1.80A {Influenza a virus}
PDB: 3tib_A* 3tic_A* 2bat_A* 1ivd_A* 1inh_A* 1inw_A*
1inx_A* 1ivc_A* 1ing_A* 1ive_A* 1ivf_A* 1ivg_A* 1nn2_A*
2aep_A* 2aeq_A*
Length = 469
Score = 26.2 bits (57), Expect = 0.97
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 9/40 (22%)
Query: 5 LSKKIAIPN--NTKVNCLAW-----HQNQGWIAVG--GDD 35
L ++ +P T+ C+AW H + W+ V GDD
Sbjct: 159 LMNELGVPFHLGTRQVCIAWSSSSCHDGKAWLHVCITGDD 198
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A
{Saccharomyces cerevisiae}
Length = 369
Score = 25.6 bits (57), Expect = 1.1
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
+N +A A GG+DG +++ +
Sbjct: 318 LNTVAISPQGTSYASGGEDGFIRLHHFEK 346
Score = 24.1 bits (53), Expect = 4.3
Identities = 5/25 (20%), Positives = 7/25 (28%)
Query: 16 KVNCLAWHQNQGWIAVGGDDGLLKV 40
W +I G DG +
Sbjct: 177 AATVAGWSTKGKYIIAGHKDGKISK 201
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision
repair, xeroderma pigmentosum, cytoplasm, DNA repair;
HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B*
4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Length = 383
Score = 25.8 bits (57), Expect = 1.1
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 17 VNCLAWHQNQGW-IAVGGDDGLLKVLKLDTVSLTIMIILF 55
V L WH +AVG G + + D + T I
Sbjct: 76 VTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGM 115
Score = 25.0 bits (55), Expect = 1.8
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
C+ ++ +A G G L +L LD
Sbjct: 166 YCCVDVSVSRQMLATGDSTGRLLLLGLDG 194
>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Length = 379
Score = 25.7 bits (57), Expect = 1.2
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
+ +W + +A+ G D + + K +
Sbjct: 259 LWRASWSLSGNVLALSGGDNKVTLWKENL 287
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A
{Saccharomyces cerevisiae}
Length = 330
Score = 25.2 bits (56), Expect = 1.7
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
V +AW N G IA G DG+L V +
Sbjct: 253 VYNVAWGFN-GLIASVGADGVLAVYEEVD 280
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed
beta-propeller, protein binding; 2.30A {Saccharomyces
cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Length = 615
Score = 25.3 bits (56), Expect = 2.0
Identities = 8/41 (19%), Positives = 19/41 (46%)
Query: 5 LSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
+S + P K + ++ ++ +IA G G + + L +
Sbjct: 479 VSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS 519
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional
CO-repressor, WD40, transcription repressor, WD repeat;
1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Length = 337
Score = 24.4 bits (54), Expect = 3.2
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
+ L + W+AVG + ++VL ++
Sbjct: 227 IFSLGYCPTGEWLAVGMESSNVEVLHVNK 255
>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum, ER-golgi transport, membrane,
mRNA transport; 4.00A {Saccharomyces cerevisiae}
Length = 753
Score = 24.5 bits (53), Expect = 3.5
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKV 40
+ +W + +A+ G D + +
Sbjct: 257 LWRASWSLSGNVLALSGGDNKVTL 280
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP,
RGS domain, DEP domain, DHEX domain, GGL domain,
propeller, signaling protein; 1.95A {Mus musculus}
Length = 354
Score = 24.0 bits (53), Expect = 4.6
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 16 KVNCLAWHQNQGWIAVGGDDGLLKV 40
KV C+ W +++ I DG + V
Sbjct: 66 KVLCMDWCKDKRRIVSSSQDGKVIV 90
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40
beta-barrel fold, DNA D DNA repair, HOST-virus
interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB:
3ei4_B*
Length = 435
Score = 23.9 bits (52), Expect = 5.0
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
L + + G + G + +L +D
Sbjct: 212 FCSLDVSASSRMVVTGDNVGNVILLNMDG 240
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national
project on prote structural and functional analysis,
structural genomics CON SGC; HET: M3L; 1.58A {Homo
sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A*
3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Length = 366
Score = 23.8 bits (52), Expect = 5.0
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 17 VNCLAW----HQNQGWIAVGGDDGLLKVLKLDT 45
AW + + +AV G G+++++ T
Sbjct: 72 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT 104
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.141 0.432
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,003,102
Number of extensions: 43567
Number of successful extensions: 229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 228
Number of HSP's successfully gapped: 83
Length of query: 70
Length of database: 6,701,793
Length adjustment: 40
Effective length of query: 30
Effective length of database: 5,584,953
Effective search space: 167548590
Effective search space used: 167548590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.5 bits)