RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11104
(70 letters)
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 371
Score = 35.6 bits (80), Expect = 2e-04
Identities = 6/38 (15%), Positives = 19/38 (50%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIIL 54
++C AW++++ IA+ ++ + + + + L
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHEL 47
Score = 29.8 bits (65), Expect = 0.015
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKV 40
V + W + I G D V
Sbjct: 54 VTGVDWAPDSNRIVTCGTDRNAYV 77
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 34.4 bits (77), Expect = 3e-04
Identities = 6/41 (14%), Positives = 17/41 (41%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSLTIMIILFQE 57
++ + ++ + + DG L V K D + + ++
Sbjct: 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR 54
Score = 25.6 bits (54), Expect = 0.50
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 18 NCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
N + + ++ G DG++ L T
Sbjct: 255 NSIEFSPRHKFLYTAGSDGIISCWNLQT 282
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 34.3 bits (77), Expect = 4e-04
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
V + +H + +D +KV +T
Sbjct: 20 VTRVIFHPVFSVMVSASEDATIKVWDYET 48
Score = 33.6 bits (75), Expect = 7e-04
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKV 40
V L +H+ ++ G D +KV
Sbjct: 292 VTSLDFHKTAPYVVTGSVDQTVKV 315
Score = 31.3 bits (69), Expect = 0.005
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
V + +H +I DD L+V
Sbjct: 250 VRGVLFHSGGKFILSCADDKTLRVWDYKN 278
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 33.2 bits (74), Expect = 0.001
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKV 40
V+CL + +A G D LK+
Sbjct: 315 VSCLGVTDDGMAVATGSWDSFLKI 338
Score = 30.5 bits (67), Expect = 0.010
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 16 KVNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
K+ + W + + DG L + T
Sbjct: 57 KIYAMHWGTDSRLLVSASQDGKLIIWDSYT 86
Score = 30.1 bits (66), Expect = 0.011
Identities = 4/34 (11%), Positives = 11/34 (32%)
Query: 12 PNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
+ +++ ++ + G DD V
Sbjct: 268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
Score = 29.3 bits (64), Expect = 0.023
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKV 40
+N + + N A G DD ++
Sbjct: 229 INAICFFPNGNAFATGSDDATCRL 252
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 33.2 bits (74), Expect = 0.001
Identities = 5/33 (15%), Positives = 11/33 (33%)
Query: 11 IPNNTKVNCLAWHQNQGWIAVGGDDGLLKVLKL 43
++ V + +I G D V ++
Sbjct: 303 SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
Score = 29.4 bits (64), Expect = 0.024
Identities = 6/28 (21%), Positives = 8/28 (28%)
Query: 18 NCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
L + W G D LL +
Sbjct: 269 LSLKFAYCGKWFVSTGKDNLLNAWRTPY 296
Score = 26.3 bits (56), Expect = 0.34
Identities = 3/19 (15%), Positives = 5/19 (26%)
Query: 17 VNCLAWHQNQGWIAVGGDD 35
V + + GG
Sbjct: 54 VCAVTISNPTRHVYTGGKG 72
Score = 22.5 bits (46), Expect = 6.4
Identities = 3/20 (15%), Positives = 7/20 (35%)
Query: 17 VNCLAWHQNQGWIAVGGDDG 36
+ + + VGG+
Sbjct: 100 IRSCKLLPDGCTLIVGGEAS 119
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1
{Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 32.6 bits (72), Expect = 0.002
Identities = 3/29 (10%), Positives = 10/29 (34%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
+ L+ + + +G + + T
Sbjct: 15 ITALSSSADGKTLFSADAEGHINSWDIST 43
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 31.7 bits (70), Expect = 0.004
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 13 NNTKVNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
+ V +A QN +I G D + +
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 339
Score = 29.4 bits (64), Expect = 0.022
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
V + + ++ + G D +K+ L
Sbjct: 257 VYSVVFTRDGQSVVSGSLDRSVKLWNLQN 285
Score = 28.2 bits (61), Expect = 0.064
Identities = 5/27 (18%), Positives = 8/27 (29%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKL 43
N + A G D ++ K
Sbjct: 359 ANGSSLGPEYNVFATGSGDCKARIWKY 385
Score = 28.2 bits (61), Expect = 0.072
Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTVSL 48
V C+ + + ++A G + +V ++ SL
Sbjct: 65 VCCVKFSNDGEYLATGCNKT-TQVYRVSDGSL 95
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 28.8 bits (62), Expect = 0.035
Identities = 7/24 (29%), Positives = 9/24 (37%), Gaps = 1/24 (4%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKV 40
VN L W + G D +K
Sbjct: 261 VNNLLWETP-STLVSSGADACIKR 283
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 28.7 bits (62), Expect = 0.047
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
+ L ++ + V DDG + L+
Sbjct: 317 LTDLRLSADRKTVMVRKDDGKIYTFPLEK 345
Score = 24.8 bits (52), Expect = 1.1
Identities = 2/28 (7%), Positives = 9/28 (32%)
Query: 9 IAIPNNTKVNCLAWHQNQGWIAVGGDDG 36
+ +P ++ + + + G
Sbjct: 37 LKVPEPLRIRYVRRGGDTKVAFIHGTRE 64
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 28.2 bits (61), Expect = 0.066
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 5 LSKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGL----LKVLKLD 44
L + + V + + AVG +G L VL D
Sbjct: 296 LVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339
Score = 23.6 bits (49), Expect = 2.4
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
+ CL + N I G DD LKV T
Sbjct: 20 ITCLQFCGN--RIVSGSDDNTLKVWSAVT 46
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1
(beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 28.3 bits (61), Expect = 0.067
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
V CL + I G D +K+ +T
Sbjct: 18 VYCLQYDDQ--KIVSGLRDNTIKIWDKNT 44
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 27.6 bits (59), Expect = 0.11
Identities = 3/23 (13%), Positives = 7/23 (30%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLK 39
+ + A G G ++
Sbjct: 61 TTVAKTSPSGYYCASGDVHGNVR 83
>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 381
Score = 27.2 bits (60), Expect = 0.13
Identities = 3/30 (10%), Positives = 8/30 (26%), Gaps = 1/30 (3%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDTV 46
+ L ++ V +L +
Sbjct: 39 LQNLDISNSKSLFVAASGSK-AVVGELQLL 67
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 27.1 bits (58), Expect = 0.17
Identities = 5/35 (14%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 6 SKKIAIPNNTKVNCLAWHQNQGWIAVGGDDGLLKV 40
+ + + + + + G IA G ++G +++
Sbjct: 176 TVESPMTPSQFATSVDISER-GLIATGFNNGTVQI 209
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 26.8 bits (57), Expect = 0.19
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 17 VNCLAWHQNQGWIAVGGDDGLLKVLKLDT 45
+ CL + N ++ G DD +++V
Sbjct: 16 ITCLQFEDN--YVITGADDKMIRVYDSIN 42
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 23.0 bits (47), Expect = 4.1
Identities = 5/40 (12%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 16 KVNCLAWHQNQGWIAVG-GDDGLLKVLKLDTVSLTIMIIL 54
L++ IA G ++ L + ++
Sbjct: 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQF 58
>d1nrla_ a.123.1.1 (A:) Pregnane x receptor, PXR {Human (Homo
sapiens) [TaxId: 9606]}
Length = 292
Score = 22.4 bits (47), Expect = 6.8
Identities = 5/33 (15%), Positives = 15/33 (45%)
Query: 37 LLKVLKLDTVSLTIMIILFQERNLQDKLPPLML 69
+ + +L +++ L + +++ PLM
Sbjct: 253 MAMLTELRSINAQHTQRLLRIQDIHPFATPLMQ 285
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.141 0.432
Gapped
Lambda K H
0.267 0.0373 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 248,416
Number of extensions: 8249
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 33
Length of query: 70
Length of database: 2,407,596
Length adjustment: 38
Effective length of query: 32
Effective length of database: 1,885,856
Effective search space: 60347392
Effective search space used: 60347392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.8 bits)