BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11108
(106 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P2L0|WDR35_HUMAN WD repeat-containing protein 35 OS=Homo sapiens GN=WDR35 PE=1 SV=3
Length = 1181
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%)
Query: 26 FLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENY 85
L+ + +K Y EQA V C+DY G++ +K L L + MK A + + GRF+ AE
Sbjct: 701 LLAEAALQKLDLYTAEQAFVRCKDYQGIKFVKRLGKLLSESMKQAEVVGYFGRFEEAERT 760
Query: 86 QLQADRR 92
L+ DRR
Sbjct: 761 YLEMDRR 767
>sp|A6N6J5|WDR35_RAT WD repeat-containing protein 35 OS=Rattus norvegicus GN=Wdr35 PE=1
SV=1
Length = 1170
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%)
Query: 26 FLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENY 85
L+ + +K Y +QA V C+DY G++ +K L L + MK A + + GRF+ AE
Sbjct: 690 LLAEAALQKLDLYTAQQAFVRCKDYQGIKFVKRLGNLQSESMKQAEVIAYFGRFEEAERM 749
Query: 86 QLQADRR 92
L DRR
Sbjct: 750 YLDMDRR 756
>sp|Q8BND3|WDR35_MOUSE WD repeat-containing protein 35 OS=Mus musculus GN=Wdr35 PE=2 SV=3
Length = 1181
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%)
Query: 26 FLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENY 85
L+ + +K Y +QA V C+DY G++ +K L L + MK A + + GRF+ AE
Sbjct: 701 LLAEAALQKLDLYTAQQAFVRCKDYQGIKFVKLLGNLQSESMKQAEVIAYFGRFEDAERM 760
Query: 86 QLQADRR 92
DRR
Sbjct: 761 YQDMDRR 767
>sp|O42851|YFHE_SCHPO Uncharacterized trans-sulfuration enzyme C23A1.14c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC23A1.14c PE=2 SV=1
Length = 398
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 28/86 (32%)
Query: 19 YVAGQASFLSGVSQKKER---------------FYHVEQALVNCQDYAGLQLIKSLRALP 63
Y+AG + L+GV+ K+R H +QA + L++SLR P
Sbjct: 213 YLAGHSDVLAGVTASKDRSKILDLKADRAYLGTILHPQQAFL---------LLRSLRTFP 263
Query: 64 DDIMKHA----YIAQHQGRFQTAENY 85
I KH+ +AQH + T E +
Sbjct: 264 LRIAKHSENGFLVAQHLNKLATDEQF 289
>sp|P68875|S230_PLAFO Transmission-blocking target antigen S230 OS=Plasmodium falciparum
(isolate NF54) GN=S230 PE=1 SV=1
Length = 3135
Score = 32.3 bits (72), Expect = 0.78, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 10 SRHSFVLCPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKH 69
S +SF LC + G S + SQ KE+ V+ + D GL+ K P +
Sbjct: 2201 SENSFKLCDFTTGSTSLMELNSQVKEKKCTVK---IKKGDIFGLKCPKGFAIFPQACFSN 2257
Query: 70 AYIAQHQGRFQTAE--NYQLQADRRTWKSKP 98
+ ++ ++ +E NY + D++ + KP
Sbjct: 2258 VLLEYYKSDYEDSEHINYYIHKDKK-YNLKP 2287
>sp|P68874|S230_PLAF7 Transmission-blocking target antigen S230 OS=Plasmodium falciparum
(isolate 3D7) GN=S230 PE=2 SV=1
Length = 3135
Score = 32.3 bits (72), Expect = 0.78, Method: Composition-based stats.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 10 SRHSFVLCPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKH 69
S +SF LC + G S + SQ KE+ V+ + D GL+ K P +
Sbjct: 2201 SENSFKLCDFTTGSTSLMELNSQVKEKKCTVK---IKKGDIFGLKCPKGFAIFPQACFSN 2257
Query: 70 AYIAQHQGRFQTAE--NYQLQADRRTWKSKP 98
+ ++ ++ +E NY + D++ + KP
Sbjct: 2258 VLLEYYKSDYEDSEHINYYIHKDKK-YNLKP 2287
>sp|P42512|FPTA_PSEAE Fe(3+)-pyochelin receptor OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=fptA PE=1
SV=1
Length = 720
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 82 AENYQLQADRRTWKSKP 98
AE YQ QADR+TW S+P
Sbjct: 498 AEVYQPQADRQTWNSEP 514
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.131 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,541,876
Number of Sequences: 539616
Number of extensions: 1160189
Number of successful extensions: 2608
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2604
Number of HSP's gapped (non-prelim): 7
length of query: 106
length of database: 191,569,459
effective HSP length: 75
effective length of query: 31
effective length of database: 151,098,259
effective search space: 4684046029
effective search space used: 4684046029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)