Query psy11108
Match_columns 106
No_of_seqs 107 out of 207
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 18:09:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11108.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11108hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkq_A Coatomer beta'-subunit; 99.4 4.1E-13 1.4E-17 108.8 8.2 91 8-98 668-758 (814)
2 3mkq_B Coatomer subunit alpha; 99.2 1.5E-11 5.1E-16 90.1 7.3 89 8-96 21-122 (177)
3 1b89_A Protein (clathrin heavy 98.1 1.9E-07 6.4E-12 76.5 -1.0 72 8-93 19-90 (449)
4 3mkq_A Coatomer beta'-subunit; 96.5 0.0031 1.1E-07 50.8 5.4 72 27-98 699-771 (814)
5 3ma5_A Tetratricopeptide repea 96.1 0.052 1.8E-06 33.3 8.1 65 17-89 3-67 (100)
6 3mkq_B Coatomer subunit alpha; 95.5 0.02 6.7E-07 41.5 5.1 68 24-95 79-147 (177)
7 2xcb_A PCRH, regulatory protei 95.4 0.14 4.7E-06 32.9 8.3 65 17-89 48-112 (142)
8 2vgx_A Chaperone SYCD; alterna 95.3 0.14 4.9E-06 33.6 8.3 65 17-89 51-115 (148)
9 3gyz_A Chaperone protein IPGC; 95.0 0.17 5.7E-06 34.2 8.3 65 17-89 66-130 (151)
10 3upv_A Heat shock protein STI1 94.3 0.3 1E-05 30.1 7.6 65 17-89 34-98 (126)
11 2kat_A Uncharacterized protein 94.2 0.53 1.8E-05 28.6 8.8 65 17-89 15-79 (115)
12 2kck_A TPR repeat; tetratricop 94.1 0.12 4.1E-06 30.2 5.1 62 20-89 5-66 (112)
13 2vyi_A SGTA protein; chaperone 94.1 0.4 1.4E-05 28.5 7.6 64 18-89 43-106 (131)
14 1b89_A Protein (clathrin heavy 93.9 0.029 9.8E-07 45.8 2.6 68 8-92 110-177 (449)
15 3q49_B STIP1 homology and U bo 93.8 0.21 7.1E-06 30.9 6.1 64 18-89 40-103 (137)
16 1na3_A Designed protein CTPR2; 93.8 0.13 4.6E-06 29.4 4.8 62 20-89 8-69 (91)
17 4gco_A Protein STI-1; structur 93.7 0.42 1.4E-05 30.5 7.6 63 18-89 44-107 (126)
18 1na0_A Designed protein CTPR3; 93.6 0.52 1.8E-05 27.7 7.5 63 19-89 41-103 (125)
19 1elw_A TPR1-domain of HOP; HOP 93.5 0.61 2.1E-05 27.2 7.8 64 18-89 35-98 (118)
20 3q49_B STIP1 homology and U bo 93.5 0.5 1.7E-05 29.0 7.5 64 18-89 6-69 (137)
21 3vtx_A MAMA; tetratricopeptide 93.3 0.56 1.9E-05 30.5 7.9 62 20-89 106-167 (184)
22 2l6j_A TPR repeat-containing p 93.2 0.48 1.6E-05 27.9 6.8 62 20-89 3-64 (111)
23 3sz7_A HSC70 cochaperone (SGT) 93.0 0.61 2.1E-05 30.2 7.6 64 18-89 42-105 (164)
24 3k9i_A BH0479 protein; putativ 92.8 0.28 9.6E-06 30.3 5.5 64 18-89 24-87 (117)
25 3sz7_A HSC70 cochaperone (SGT) 92.7 0.41 1.4E-05 31.0 6.5 62 20-89 10-71 (164)
26 1hxi_A PEX5, peroxisome target 92.7 0.43 1.5E-05 30.1 6.4 65 17-89 47-111 (121)
27 4gcn_A Protein STI-1; structur 92.6 0.52 1.8E-05 29.9 6.7 57 22-89 9-68 (127)
28 2lni_A Stress-induced-phosphop 92.6 0.74 2.5E-05 27.6 7.2 62 20-89 49-110 (133)
29 4gco_A Protein STI-1; structur 92.5 0.37 1.3E-05 30.8 6.0 62 20-89 12-73 (126)
30 3upv_A Heat shock protein STI1 92.5 0.48 1.6E-05 29.1 6.3 61 21-89 4-64 (126)
31 2fo7_A Synthetic consensus TPR 92.5 0.89 3E-05 26.8 7.3 29 19-47 33-61 (136)
32 1na0_A Designed protein CTPR3; 92.3 0.89 3.1E-05 26.6 7.2 61 21-89 9-69 (125)
33 1elr_A TPR2A-domain of HOP; HO 92.3 0.53 1.8E-05 28.0 6.1 61 21-89 4-64 (131)
34 1a17_A Serine/threonine protei 92.2 1.1 3.7E-05 28.0 7.9 64 18-89 44-107 (166)
35 3vtx_A MAMA; tetratricopeptide 92.2 0.7 2.4E-05 30.0 7.2 60 20-89 4-65 (184)
36 1elw_A TPR1-domain of HOP; HOP 92.2 0.77 2.6E-05 26.7 6.8 61 21-89 4-64 (118)
37 3mkr_A Coatomer subunit epsilo 92.2 0.39 1.3E-05 35.1 6.4 58 18-88 98-155 (291)
38 3uq3_A Heat shock protein STI1 92.0 0.89 3.1E-05 30.4 7.6 21 68-88 212-232 (258)
39 2dba_A Smooth muscle cell asso 91.9 1.1 3.9E-05 27.3 7.6 23 67-89 103-125 (148)
40 2fo7_A Synthetic consensus TPR 91.9 1.1 3.6E-05 26.4 7.2 21 68-88 108-128 (136)
41 1elr_A TPR2A-domain of HOP; HO 91.7 1.1 3.9E-05 26.5 7.2 68 17-89 34-105 (131)
42 1xnf_A Lipoprotein NLPI; TPR, 91.7 1.3 4.6E-05 30.0 8.3 23 67-89 115-137 (275)
43 3as5_A MAMA; tetratricopeptide 91.6 1.2 4E-05 28.0 7.5 29 19-47 74-102 (186)
44 2xev_A YBGF; tetratricopeptide 91.5 1.4 4.9E-05 26.6 7.6 60 22-89 40-102 (129)
45 3gw4_A Uncharacterized protein 91.3 2 6.8E-05 27.8 9.6 62 20-89 25-92 (203)
46 2vyi_A SGTA protein; chaperone 91.2 0.57 2E-05 27.8 5.4 62 20-89 11-72 (131)
47 2vq2_A PILW, putative fimbrial 91.2 0.76 2.6E-05 30.0 6.4 23 67-89 80-103 (225)
48 1hh8_A P67PHOX, NCF-2, neutrop 91.1 0.63 2.1E-05 30.8 6.0 63 19-89 35-97 (213)
49 3gyz_A Chaperone protein IPGC; 91.0 0.7 2.4E-05 31.0 6.3 62 20-89 35-96 (151)
50 2pl2_A Hypothetical conserved 91.0 1.1 3.7E-05 30.7 7.4 64 17-89 114-177 (217)
51 3as5_A MAMA; tetratricopeptide 90.9 1.7 5.9E-05 27.1 7.8 29 19-47 40-68 (186)
52 2lni_A Stress-induced-phosphop 90.8 0.41 1.4E-05 28.8 4.5 64 18-89 13-76 (133)
53 2q7f_A YRRB protein; TPR, prot 90.8 1.4 4.9E-05 29.2 7.6 21 68-88 130-150 (243)
54 1a17_A Serine/threonine protei 90.7 1.4 4.7E-05 27.5 7.2 61 21-89 13-73 (166)
55 2pl2_A Hypothetical conserved 90.7 1.3 4.3E-05 30.4 7.5 61 18-89 2-65 (217)
56 1xi4_A Clathrin heavy chain; a 90.6 0.82 2.8E-05 42.7 7.9 68 8-88 1092-1159(1630)
57 3qou_A Protein YBBN; thioredox 90.5 1 3.4E-05 32.5 7.1 66 18-91 114-179 (287)
58 2c2l_A CHIP, carboxy terminus 90.4 1.3 4.4E-05 31.9 7.7 65 17-89 34-98 (281)
59 2ho1_A Type 4 fimbrial biogene 90.3 1.6 5.3E-05 29.5 7.6 64 18-89 68-131 (252)
60 3hym_B Cell division cycle pro 90.3 2.1 7.2E-05 29.6 8.4 26 21-46 125-150 (330)
61 3cv0_A Peroxisome targeting si 90.2 1.5 5.2E-05 30.3 7.6 21 68-88 245-265 (327)
62 4ga2_A E3 SUMO-protein ligase 90.1 0.71 2.4E-05 30.1 5.5 61 19-87 63-123 (150)
63 2kck_A TPR repeat; tetratricop 90.1 0.69 2.3E-05 26.8 5.0 66 18-89 37-103 (112)
64 2q7f_A YRRB protein; TPR, prot 90.0 1.8 6.2E-05 28.7 7.6 65 17-89 53-117 (243)
65 3hym_B Cell division cycle pro 89.9 1.4 4.9E-05 30.5 7.3 31 17-47 86-117 (330)
66 4eqf_A PEX5-related protein; a 89.9 1.5 5.2E-05 31.5 7.6 23 67-89 137-159 (365)
67 3gw4_A Uncharacterized protein 89.9 2.2 7.6E-05 27.6 7.8 60 22-89 108-173 (203)
68 2vq2_A PILW, putative fimbrial 89.8 1.5 5E-05 28.6 6.9 21 68-88 152-172 (225)
69 2dba_A Smooth muscle cell asso 89.8 2.2 7.7E-05 26.0 8.6 68 17-89 24-91 (148)
70 3edt_B KLC 2, kinesin light ch 89.7 1 3.6E-05 30.3 6.2 65 20-89 42-111 (283)
71 2vgx_A Chaperone SYCD; alterna 89.6 1.2 4E-05 29.1 6.3 62 20-89 20-81 (148)
72 2ho1_A Type 4 fimbrial biogene 89.4 2.9 9.8E-05 28.1 8.4 31 19-49 103-133 (252)
73 4eqf_A PEX5-related protein; a 89.1 1.2 4.3E-05 31.9 6.6 22 68-89 286-307 (365)
74 1fch_A Peroxisomal targeting s 89.0 1.9 6.3E-05 30.7 7.4 23 67-89 289-311 (368)
75 2xev_A YBGF; tetratricopeptide 89.0 2.5 8.5E-05 25.4 7.6 58 24-89 5-65 (129)
76 3ieg_A DNAJ homolog subfamily 88.9 1.9 6.4E-05 30.1 7.3 65 17-89 33-97 (359)
77 2y4t_A DNAJ homolog subfamily 88.9 1.1 3.8E-05 32.9 6.3 23 67-89 98-120 (450)
78 1hxi_A PEX5, peroxisome target 88.9 1.2 4.1E-05 28.0 5.7 60 22-89 18-77 (121)
79 3cv0_A Peroxisome targeting si 88.8 2.2 7.6E-05 29.4 7.6 64 18-89 52-115 (327)
80 2xcb_A PCRH, regulatory protei 88.7 1.5 5.2E-05 27.7 6.3 62 20-89 17-78 (142)
81 2r5s_A Uncharacterized protein 88.7 2.2 7.5E-05 27.9 7.2 73 17-89 36-134 (176)
82 3qou_A Protein YBBN; thioredox 88.7 1.6 5.6E-05 31.4 7.1 73 17-89 147-245 (287)
83 3nf1_A KLC 1, kinesin light ch 88.5 1.3 4.5E-05 30.4 6.2 64 21-89 27-95 (311)
84 2y4t_A DNAJ homolog subfamily 88.4 2.1 7.2E-05 31.4 7.6 66 16-89 21-86 (450)
85 1fch_A Peroxisomal targeting s 88.3 2.4 8.1E-05 30.1 7.6 23 67-89 136-158 (368)
86 3uq3_A Heat shock protein STI1 88.3 1.4 4.7E-05 29.4 6.0 63 19-89 137-199 (258)
87 1hh8_A P67PHOX, NCF-2, neutrop 88.1 3.9 0.00013 26.8 8.2 72 18-89 68-147 (213)
88 3urz_A Uncharacterized protein 87.9 1.5 5.1E-05 29.8 6.1 55 27-89 60-114 (208)
89 3rkv_A Putative peptidylprolyl 87.5 2.2 7.5E-05 27.4 6.5 61 21-89 63-123 (162)
90 2gw1_A Mitochondrial precursor 87.1 2 6.8E-05 31.9 6.8 65 17-89 35-99 (514)
91 2r5s_A Uncharacterized protein 87.0 2.7 9.1E-05 27.5 6.8 64 17-88 104-169 (176)
92 2kc7_A BFR218_protein; tetratr 86.7 2.3 7.9E-05 24.7 5.8 55 27-89 6-61 (99)
93 4i17_A Hypothetical protein; T 86.5 2.1 7.1E-05 28.8 6.2 60 19-89 40-102 (228)
94 2fbn_A 70 kDa peptidylprolyl i 86.4 4 0.00014 27.0 7.5 27 21-47 38-64 (198)
95 2fbn_A 70 kDa peptidylprolyl i 86.3 1.7 5.8E-05 28.9 5.6 60 22-89 89-148 (198)
96 3u4t_A TPR repeat-containing p 86.3 5 0.00017 27.1 8.1 23 67-89 112-134 (272)
97 2hr2_A Hypothetical protein; a 86.3 5.8 0.0002 27.6 8.5 63 23-89 59-128 (159)
98 4ga2_A E3 SUMO-protein ligase 86.2 1.5 5.1E-05 28.4 5.1 61 21-89 31-91 (150)
99 1ouv_A Conserved hypothetical 86.1 1.9 6.6E-05 29.8 5.9 23 67-89 78-104 (273)
100 3edt_B KLC 2, kinesin light ch 86.1 5.8 0.0002 26.5 8.5 64 21-89 85-153 (283)
101 2e2e_A Formate-dependent nitri 86.0 4.2 0.00014 26.1 7.3 73 17-89 40-141 (177)
102 1xnf_A Lipoprotein NLPI; TPR, 85.6 2.3 7.8E-05 28.8 6.0 62 20-89 42-103 (275)
103 1w3b_A UDP-N-acetylglucosamine 85.6 2.5 8.4E-05 30.7 6.5 31 17-47 63-93 (388)
104 2vsy_A XCC0866; transferase, g 85.3 2.4 8.2E-05 33.2 6.7 29 19-47 21-49 (568)
105 3ieg_A DNAJ homolog subfamily 85.2 3.6 0.00012 28.6 7.0 61 21-89 3-63 (359)
106 3fp2_A TPR repeat-containing p 85.2 5.2 0.00018 30.0 8.3 30 18-47 307-336 (537)
107 3u4t_A TPR repeat-containing p 85.1 1.6 5.3E-05 29.8 5.0 67 18-89 34-100 (272)
108 2c2l_A CHIP, carboxy terminus 85.0 4.6 0.00016 28.9 7.7 64 20-91 3-66 (281)
109 4gyw_A UDP-N-acetylglucosamine 85.0 1.8 6.2E-05 36.5 6.2 28 19-46 7-34 (723)
110 4i17_A Hypothetical protein; T 85.0 3 0.0001 28.0 6.3 64 19-89 5-68 (228)
111 2e2e_A Formate-dependent nitri 84.8 4.4 0.00015 26.0 7.0 30 18-47 75-107 (177)
112 1w3b_A UDP-N-acetylglucosamine 84.8 4.1 0.00014 29.5 7.4 65 16-88 28-92 (388)
113 3ro3_A PINS homolog, G-protein 84.1 5.1 0.00017 24.1 7.2 63 22-89 10-75 (164)
114 1wao_1 Serine/threonine protei 83.5 2.5 8.4E-05 33.3 6.1 65 17-89 36-100 (477)
115 3fp2_A TPR repeat-containing p 82.9 4.8 0.00017 30.1 7.3 63 17-87 55-117 (537)
116 3nf1_A KLC 1, kinesin light ch 82.4 4.1 0.00014 27.8 6.2 64 21-89 69-137 (311)
117 2gw1_A Mitochondrial precursor 82.2 5.3 0.00018 29.5 7.2 23 67-89 376-398 (514)
118 4abn_A Tetratricopeptide repea 82.0 2.8 9.5E-05 32.6 5.8 68 17-89 209-284 (474)
119 1xi4_A Clathrin heavy chain; a 81.8 0.98 3.4E-05 42.2 3.5 91 13-103 945-1094(1630)
120 4a1s_A PINS, partner of inscut 81.8 5.9 0.0002 28.7 7.2 62 22-88 224-288 (411)
121 2xpi_A Anaphase-promoting comp 81.6 3 0.0001 32.0 5.7 61 21-89 516-576 (597)
122 3sf4_A G-protein-signaling mod 81.6 8.4 0.00029 27.4 7.9 60 22-89 188-253 (406)
123 1p5q_A FKBP52, FK506-binding p 81.4 5.8 0.0002 29.3 7.2 61 21-89 196-256 (336)
124 3ro3_A PINS homolog, G-protein 80.9 7 0.00024 23.5 7.7 62 23-89 91-155 (164)
125 2ond_A Cleavage stimulation fa 80.7 6.1 0.00021 28.2 6.9 30 18-47 96-125 (308)
126 2xpi_A Anaphase-promoting comp 80.5 6.5 0.00022 30.0 7.3 22 67-88 154-175 (597)
127 1ihg_A Cyclophilin 40; ppiase 80.5 4.8 0.00016 30.6 6.6 61 21-89 273-333 (370)
128 3qww_A SET and MYND domain-con 80.3 12 0.00041 29.5 9.1 61 24-89 343-408 (433)
129 3qky_A Outer membrane assembly 80.3 8.1 0.00028 26.5 7.2 65 17-89 11-78 (261)
130 4gyw_A UDP-N-acetylglucosamine 79.5 6.5 0.00022 33.1 7.6 23 67-89 115-137 (723)
131 4abn_A Tetratricopeptide repea 79.4 2.2 7.6E-05 33.2 4.4 62 17-89 133-205 (474)
132 2vsy_A XCC0866; transferase, g 79.4 8.8 0.0003 29.9 7.9 65 17-89 53-117 (568)
133 3mkr_A Coatomer subunit epsilo 79.4 6.9 0.00023 28.3 6.9 80 10-89 119-226 (291)
134 1kt0_A FKBP51, 51 kDa FK506-bi 79.3 14 0.00047 28.6 8.9 61 21-89 317-377 (457)
135 3ro2_A PINS homolog, G-protein 78.8 9.9 0.00034 25.8 7.2 63 22-89 184-249 (338)
136 4gcn_A Protein STI-1; structur 78.0 10 0.00034 23.6 8.4 66 17-89 38-109 (127)
137 2pzi_A Probable serine/threoni 76.9 7.8 0.00027 31.7 7.2 65 17-89 429-493 (681)
138 2pzi_A Probable serine/threoni 76.6 7.9 0.00027 31.7 7.1 76 17-92 463-563 (681)
139 1ouv_A Conserved hypothetical 76.5 14 0.00049 25.2 7.6 23 67-89 114-140 (273)
140 2if4_A ATFKBP42; FKBP-like, al 76.2 6.8 0.00023 29.0 6.2 62 23-92 232-293 (338)
141 4a1s_A PINS, partner of inscut 75.8 12 0.0004 27.0 7.2 64 22-90 304-370 (411)
142 2ooe_A Cleavage stimulation fa 75.3 15 0.0005 28.3 8.0 60 18-89 10-72 (530)
143 3sf4_A G-protein-signaling mod 74.4 12 0.00043 26.4 7.0 63 22-89 48-113 (406)
144 3ro2_A PINS homolog, G-protein 74.2 15 0.0005 24.9 7.0 62 23-89 265-329 (338)
145 2ond_A Cleavage stimulation fa 74.1 14 0.00047 26.3 7.2 28 21-48 133-161 (308)
146 3rkv_A Putative peptidylprolyl 73.8 14 0.00049 23.3 6.9 64 21-89 11-89 (162)
147 1p5q_A FKBP52, FK506-binding p 73.4 21 0.00071 26.2 8.2 69 21-89 147-222 (336)
148 3q15_A PSP28, response regulat 73.1 18 0.00062 26.3 7.7 61 21-89 182-248 (378)
149 3urz_A Uncharacterized protein 72.7 19 0.00064 24.1 8.2 69 21-89 4-80 (208)
150 3qwp_A SET and MYND domain-con 71.8 23 0.00077 27.7 8.5 61 24-89 332-397 (429)
151 1ihg_A Cyclophilin 40; ppiase 71.4 13 0.00045 28.1 6.8 64 21-89 223-299 (370)
152 4g1t_A Interferon-induced prot 69.9 19 0.00064 26.6 7.2 73 12-89 42-120 (472)
153 3n71_A Histone lysine methyltr 69.2 18 0.00062 29.0 7.5 61 24-89 354-419 (490)
154 3ulq_A Response regulator aspa 69.1 29 0.00098 25.1 8.0 62 23-89 226-290 (383)
155 3mv2_B Coatomer subunit epsilo 66.6 22 0.00074 27.2 7.2 69 19-88 134-236 (310)
156 3ly7_A Transcriptional activat 66.0 17 0.00057 28.8 6.5 62 17-89 273-336 (372)
157 3qky_A Outer membrane assembly 65.4 29 0.001 23.6 8.0 69 21-89 89-174 (261)
158 3qwp_A SET and MYND domain-con 65.2 26 0.0009 27.3 7.6 22 68-89 334-355 (429)
159 3ulq_A Response regulator aspa 65.0 36 0.0012 24.5 8.5 60 22-89 144-210 (383)
160 1hz4_A MALT regulatory protein 63.4 38 0.0013 24.2 8.0 58 24-89 56-119 (373)
161 1kt0_A FKBP51, 51 kDa FK506-bi 62.5 42 0.0014 25.8 8.2 69 21-89 268-343 (457)
162 3q15_A PSP28, response regulat 61.1 41 0.0014 24.3 7.6 62 23-89 224-287 (378)
163 2qfc_A PLCR protein; TPR, HTH, 59.5 42 0.0014 23.4 7.8 63 22-89 156-222 (293)
164 3u3w_A Transcriptional activat 58.8 43 0.0015 23.4 7.3 62 23-89 157-222 (293)
165 1qqe_A Vesicular transport pro 57.7 33 0.0011 24.2 6.4 62 22-91 118-186 (292)
166 1wao_1 Serine/threonine protei 56.9 16 0.00055 28.5 5.0 68 17-92 70-139 (477)
167 2yhc_A BAMD, UPF0169 lipoprote 56.4 42 0.0014 22.5 8.4 61 20-88 3-66 (225)
168 4g1t_A Interferon-induced prot 55.3 54 0.0018 24.0 7.4 31 17-47 243-273 (472)
169 2ifu_A Gamma-SNAP; membrane fu 54.8 32 0.0011 24.5 5.9 21 69-89 161-181 (307)
170 3n71_A Histone lysine methyltr 54.4 32 0.0011 27.5 6.4 22 68-89 356-377 (490)
171 3k9i_A BH0479 protein; putativ 54.2 13 0.00044 22.4 3.2 23 67-89 31-53 (117)
172 2h6f_A Protein farnesyltransfe 51.5 31 0.0011 26.2 5.7 31 17-47 127-158 (382)
173 3bee_A Putative YFRE protein; 51.5 38 0.0013 20.5 7.1 61 17-89 2-69 (93)
174 2crb_A Nuclear receptor bindin 49.9 15 0.0005 24.1 3.1 31 67-97 19-50 (97)
175 2xl1_A Arginine attenuator pep 49.8 4.5 0.00015 20.2 0.4 23 1-28 1-23 (26)
176 4b4t_Q 26S proteasome regulato 48.6 18 0.00061 26.3 3.8 28 62-89 3-30 (434)
177 1qqe_A Vesicular transport pro 47.1 71 0.0024 22.4 6.7 61 22-90 159-226 (292)
178 3qww_A SET and MYND domain-con 45.0 14 0.00049 29.1 2.9 22 68-89 345-366 (433)
179 4f3v_A ESX-1 secretion system 44.2 57 0.002 24.4 6.1 61 23-89 173-234 (282)
180 4f3v_A ESX-1 secretion system 44.0 70 0.0024 23.9 6.5 61 23-89 137-197 (282)
181 3ax2_A Mitochondrial import re 43.2 29 0.00098 21.4 3.5 25 65-89 19-43 (73)
182 2ooe_A Cleavage stimulation fa 42.6 99 0.0034 23.5 7.4 30 18-47 269-312 (530)
183 2h6f_A Protein farnesyltransfe 41.8 24 0.00082 26.9 3.7 64 17-88 162-225 (382)
184 2hr2_A Hypothetical protein; a 40.5 86 0.003 21.5 8.4 67 21-89 11-83 (159)
185 3rjv_A Putative SEL1 repeat pr 39.7 60 0.0021 21.7 5.2 29 19-47 16-44 (212)
186 3mv2_B Coatomer subunit epsilo 39.2 1.2E+02 0.0042 22.9 8.5 62 20-88 99-161 (310)
187 3bee_A Putative YFRE protein; 38.8 51 0.0017 19.9 4.3 33 16-48 38-70 (93)
188 2qfc_A PLCR protein; TPR, HTH, 38.7 24 0.00082 24.7 3.1 63 22-89 197-263 (293)
189 2if4_A ATFKBP42; FKBP-like, al 37.7 38 0.0013 24.8 4.1 67 21-89 179-256 (338)
190 2yhc_A BAMD, UPF0169 lipoprote 37.3 90 0.0031 20.7 6.8 56 34-89 109-173 (225)
191 3lvg_A Clathrin heavy chain 1; 36.5 0.72 2.5E-05 39.1 -6.1 46 8-53 41-86 (624)
192 1hz4_A MALT regulatory protein 35.6 1.2E+02 0.004 21.5 9.3 61 24-89 96-161 (373)
193 4b4t_Q 26S proteasome regulato 29.6 1.6E+02 0.0053 21.1 7.9 61 21-89 135-201 (434)
194 4b4t_R RPN7, 26S proteasome re 28.5 1.3E+02 0.0046 23.1 6.1 22 68-89 213-234 (429)
195 4ard_A Capsid protein P27; vir 28.4 25 0.00087 23.6 1.6 19 19-37 35-53 (116)
196 2ifu_A Gamma-SNAP; membrane fu 27.5 1.6E+02 0.0055 20.6 7.9 60 23-90 157-222 (307)
197 4b4t_S RPN3, 26S proteasome re 27.4 1.7E+02 0.0058 24.2 6.7 61 21-89 231-296 (523)
198 3e4b_A ALGK; tetratricopeptide 27.4 24 0.00083 27.0 1.6 22 26-47 8-29 (452)
199 2xm6_A Protein corresponding t 26.8 2E+02 0.0068 21.5 6.8 60 20-89 362-429 (490)
200 2rpa_A Katanin P60 ATPase-cont 26.7 47 0.0016 20.6 2.6 25 65-89 14-38 (78)
201 4gns_B Protein CSD3, chitin bi 25.0 73 0.0025 27.4 4.2 30 21-50 613-642 (754)
202 1om2_A Protein (mitochondrial 24.1 79 0.0027 20.3 3.3 25 65-89 22-46 (95)
203 3t5x_A PCI domain-containing p 23.3 60 0.002 22.9 2.9 22 68-89 19-40 (203)
204 1zu2_A Mitochondrial import re 22.6 1.6E+02 0.0055 20.1 5.0 13 77-89 105-117 (158)
205 3u3w_A Transcriptional activat 21.7 2E+02 0.0069 19.8 8.6 63 22-89 197-263 (293)
206 2e2a_A Protein (enzyme IIA); h 20.6 83 0.0029 20.4 3.0 25 67-91 24-48 (105)
207 2kgf_A Capsid protein P27; ret 20.1 38 0.0013 23.4 1.2 28 17-44 51-78 (140)
No 1
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.41 E-value=4.1e-13 Score=108.80 Aligned_cols=91 Identities=18% Similarity=0.099 Sum_probs=76.1
Q ss_pred HhhhhhhhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHH
Q psy11108 8 IASRHSFVLCPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQL 87 (106)
Q Consensus 8 ~~~~~~f~~~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l 87 (106)
+..|.+.++..+++.+|+.||..||+.+++++|++||.+++|++++.+|..+....+...+.|+++...|++++|+.+|+
T Consensus 668 ~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~ 747 (814)
T 3mkq_A 668 LTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYW 747 (814)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 34677778888889999999999999999999999999999999999999986666665677777777777777777777
Q ss_pred HcCCccccccC
Q psy11108 88 QADRRTWKSKP 98 (106)
Q Consensus 88 ~ag~~~~Aiem 98 (106)
+.|+++.|++|
T Consensus 748 ~~g~~~~a~~~ 758 (814)
T 3mkq_A 748 IAGDIQGAKDL 758 (814)
T ss_dssp HHTCHHHHHHH
T ss_pred HcCCHHHHHHH
Confidence 77777777664
No 2
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=99.25 E-value=1.5e-11 Score=90.10 Aligned_cols=89 Identities=4% Similarity=-0.137 Sum_probs=70.6
Q ss_pred HhhhhhhhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCc-------------HHHHHHHHHH
Q psy11108 8 IASRHSFVLCPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPD-------------DIMKHAYIAQ 74 (106)
Q Consensus 8 ~~~~~~f~~~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~-------------~~~~~Aei~a 74 (106)
+..|.++.+.-.++..|+.||..||..+|+++|++||.+++|++++.||..+-...+ +....-.++.
T Consensus 21 l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af~~~l 100 (177)
T 3mkq_B 21 LDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTF 100 (177)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 445777777777799999999999999999999999999999999999955543222 2233345566
Q ss_pred HcCCHHHHHHHHHHcCCccccc
Q psy11108 75 HQGRFQTAENYQLQADRRTWKS 96 (106)
Q Consensus 75 y~Gkf~EAe~i~l~ag~~~~Ai 96 (106)
|+|+++++.++|+++|+..+|.
T Consensus 101 ~lGdv~~~i~lL~~~~r~~eA~ 122 (177)
T 3mkq_B 101 YNNSTKERSSIFAEGGSLPLAY 122 (177)
T ss_dssp HHTCHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHCCChHHHH
Confidence 8888888888888888877664
No 3
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.15 E-value=1.9e-07 Score=76.46 Aligned_cols=72 Identities=14% Similarity=0.109 Sum_probs=0.0
Q ss_pred HhhhhhhhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHH
Q psy11108 8 IASRHSFVLCPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQL 87 (106)
Q Consensus 8 ~~~~~~f~~~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l 87 (106)
|.+|.+|++..++|.+|..||...++.+++.-|..+|+++.|+...+.|.+ .+.-+|+|+||.+ |+
T Consensus 19 ld~A~~fae~~~~~~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~-------------~ae~~g~~EeAi~-yl 84 (449)
T 1b89_A 19 LDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQ-------------AANTSGNWEELVK-YL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHH-------------HHHhCCCHHHHHH-HH
Confidence 788999999999999999999999999999999999999999998877765 2334889999999 55
Q ss_pred HcCCcc
Q psy11108 88 QADRRT 93 (106)
Q Consensus 88 ~ag~~~ 93 (106)
+..+.+
T Consensus 85 ~~ark~ 90 (449)
T 1b89_A 85 QMARKK 90 (449)
T ss_dssp ------
T ss_pred HHHHHh
Confidence 555444
No 4
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.55 E-value=0.0031 Score=50.84 Aligned_cols=72 Identities=10% Similarity=-0.031 Sum_probs=56.1
Q ss_pred HHHHHHhc-ccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHcCCccccccC
Q psy11108 27 LSGVSQKK-ERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQADRRTWKSKP 98 (106)
Q Consensus 27 LA~~AL~~-~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~ag~~~~Aiem 98 (106)
+|+.|... .|++-+..-|...++.+++..+-++......-....+.+.++|++++|.++|.+.|+.++|+.|
T Consensus 699 ~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~l 771 (814)
T 3mkq_A 699 LAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFL 771 (814)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHH
Confidence 45555544 5899999999999999998877777655544444445677799999999999999999988875
No 5
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.08 E-value=0.052 Score=33.28 Aligned_cols=65 Identities=9% Similarity=-0.072 Sum_probs=49.6
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 17 CPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
++..+..|-.||...+..++++-|...|.++-+.. -+.+.--...|.++...|++++|...|.++
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETD--------PDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45668899999999999999999999988752211 111223456799999999999999999874
No 6
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.02 Score=41.48 Aligned_cols=68 Identities=16% Similarity=0.125 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHcCCchhh-HHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHcCCcccc
Q psy11108 24 ASFLSGVSQKKERFYHVEQALVNCQDYAGL-QLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQADRRTWK 95 (106)
Q Consensus 24 W~~LA~~AL~~~~l~iAe~Af~rl~d~~~v-~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~ag~~~~A 95 (106)
.+.|+..|....++++|..+|--+||++.- +++.+....+ ... .++---|-.+.|++|.-+.|-...-
T Consensus 79 L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~-eA~---~~A~t~g~~~~a~~~~~~~~~~~~~ 147 (177)
T 3mkq_B 79 LSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLP-LAY---AVAKANGDEAAASAFLEQAEVDEQD 147 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHH-HHH---HHHHHTTCHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHHCCChH-HHH---HHHHHcCcHHHHHHHHHHhCCcccc
Confidence 578999999999999999999999999754 4444443322 222 3333477899999999888855443
No 7
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=95.36 E-value=0.14 Score=32.88 Aligned_cols=65 Identities=17% Similarity=-0.040 Sum_probs=47.1
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 17 CPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
++.++..|..||..-....+++-|..+|.+.-... -+-+..-...|.++...|++++|.+.|.++
T Consensus 48 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 48 DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--------INEPRFPFHAAECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44567778888888888888888888887642211 112223456899999999999999999774
No 8
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=95.27 E-value=0.14 Score=33.62 Aligned_cols=65 Identities=14% Similarity=-0.036 Sum_probs=47.6
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 17 CPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
++.++..|..||.......+++-|..+|.++-... -+-+..-...|.++...|++++|...|.++
T Consensus 51 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 51 DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--------IXEPRFPFHAAECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--------CCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45567788888888888888888888887642111 112223456799999999999999999875
No 9
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=95.04 E-value=0.17 Score=34.15 Aligned_cols=65 Identities=11% Similarity=-0.037 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 17 CPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
++.++..|..||..-...++++-|..+|.+.-... -+-+..-...|.++...|++++|...|.++
T Consensus 66 ~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--------P~~~~~~~~lg~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 66 DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--------KNDYTPVFHTGQCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------SSCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34556667777777777777777777776541110 111223456788888888888888888764
No 10
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=94.29 E-value=0.3 Score=30.09 Aligned_cols=65 Identities=12% Similarity=-0.034 Sum_probs=46.6
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 17 CPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
.+..+..|..+|..-+...+++-|...|.++-... .+.+..-...|.++...|++++|...|.++
T Consensus 34 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 34 APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--------PNFVRAYIRKATAQIAVKEYASALETLDAA 98 (126)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 34557788888888888888888888887642211 011123356799999999999999998764
No 11
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=94.17 E-value=0.53 Score=28.63 Aligned_cols=65 Identities=14% Similarity=-0.069 Sum_probs=49.4
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 17 CPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
.+..+..|..||...+...+++-|...|.+.-... ......-...|.++...|++++|...|.++
T Consensus 15 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 15 GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--------PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34568889999999999999999999988653211 011112356799999999999999999875
No 12
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=94.08 E-value=0.12 Score=30.23 Aligned_cols=62 Identities=3% Similarity=-0.071 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 20 VAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 20 ~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
.+..|..+|.......+++-|...|.++-+.. ......-...|.++...|++++|...|.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 66 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--------PEESKYWLMKGKALYNLERYEEAVDCYNYV 66 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--------cCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 44556667777777777777776665432110 000011234566666667777776666553
No 13
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=94.06 E-value=0.4 Score=28.48 Aligned_cols=64 Identities=13% Similarity=-0.035 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 18 PYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 18 ~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
+..+..|..+|.......+++-|...|.++-... ...+..-...|.++...|++++|.+.|.++
T Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 106 (131)
T 2vyi_A 43 PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--------PAYSKAYGRMGLALSSLNKHVEAVAYYKKA 106 (131)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--------ccCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3456677888888888888887777776542210 011112356788899999999999988774
No 14
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=93.91 E-value=0.029 Score=45.82 Aligned_cols=68 Identities=13% Similarity=0.115 Sum_probs=42.8
Q ss_pred HhhhhhhhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHH
Q psy11108 8 IASRHSFVLCPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQL 87 (106)
Q Consensus 8 ~~~~~~f~~~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l 87 (106)
+.++.+|++. |+..-|..+|....+.+.++-|...|..+. .-.+.|..+...|+|++|...|.
T Consensus 110 l~e~e~f~~~-pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~----------------n~~~LA~~L~~Lg~yq~AVea~~ 172 (449)
T 1b89_A 110 LAELEEFING-PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------------NFGRLASTLVHLGEYQAAVDGAR 172 (449)
T ss_dssp HHHHTTTTTC-C----------------CTTTHHHHHHHTT----------------CHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHhh----------------hHHHHHHHHHHhccHHHHHHHHH
Confidence 3567788887 455699999999999999999999999873 33567888899999999999999
Q ss_pred HcCCc
Q psy11108 88 QADRR 92 (106)
Q Consensus 88 ~ag~~ 92 (106)
+++.+
T Consensus 173 KA~~~ 177 (449)
T 1b89_A 173 KANST 177 (449)
T ss_dssp HHTCH
T ss_pred HcCCc
Confidence 99877
No 15
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=93.80 E-value=0.21 Score=30.87 Aligned_cols=64 Identities=9% Similarity=-0.110 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 18 PYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 18 ~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
+.++..|..+|...+...+++-|...|.++-... ...+..-...|.++...|++++|...|.++
T Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 40 PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--------GQSVKAHFFLGQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3446667777777777777777776665442211 011112356788899999999999888764
No 16
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=93.75 E-value=0.13 Score=29.44 Aligned_cols=62 Identities=13% Similarity=0.063 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 20 VAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 20 ~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
.+..|..+|.......+++-|...|.+.-+.. ...+..-...|.++...|++++|...|.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35679999999999999999999987653211 011112356799999999999999999875
No 17
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=93.69 E-value=0.42 Score=30.48 Aligned_cols=63 Identities=16% Similarity=0.037 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCC-CcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 18 PYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRAL-PDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 18 ~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~-~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
+.++..|..+|..-+..++++-|...|.++=. +..- ...-...|.++...|++++|.+.|.++
T Consensus 44 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---------~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 44 PENAILYSNRAACLTKLMEFQRALDDCDTCIR---------LDSKFIKGYIRKAACLVAMREWSKAQRAYEDA 107 (126)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH---------hhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34455666666666666666666665554311 1000 112345788888888888888888764
No 18
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=93.61 E-value=0.52 Score=27.69 Aligned_cols=63 Identities=13% Similarity=0.048 Sum_probs=39.0
Q ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 19 YVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 19 ~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
..+..|..+|.......+++-|...|.++-+.. ...+..-...|.++...|++++|...|.++
T Consensus 41 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 41 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 345667777777777777777776665542110 000111245678888888888888888764
No 19
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=93.52 E-value=0.61 Score=27.18 Aligned_cols=64 Identities=16% Similarity=0.052 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 18 PYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 18 ~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
+.++..|..+|...+...+++-|...|.++-+.. ...+..-...|.++...|++++|...|.++
T Consensus 35 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 35 PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--------PDWGKGYSRKAAALEFLNRFEEAKRTYEEG 98 (118)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4457788889988888888888888776542211 011112356789999999999999999875
No 20
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=93.50 E-value=0.5 Score=29.04 Aligned_cols=64 Identities=6% Similarity=-0.157 Sum_probs=48.9
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 18 PYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 18 ~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
+..+..|..+|...+...+++-|...|.++-... ...+.--...|.++...|++++|...|.++
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 69 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--------PLVAVYYTNRALCYLKMQQPEQALADCRRA 69 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--------cCcHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3457889999999999999999999998652221 111122356799999999999999999875
No 21
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=93.32 E-value=0.56 Score=30.52 Aligned_cols=62 Identities=13% Similarity=-0.031 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 20 VAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 20 ~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
++..|..+|..-...++++-|...|.++-... -..+.--...|.++..+|++++|.+.|.++
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 167 (184)
T 3vtx_A 106 YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--------PGFIRAYQSIGLAYEGKGLRDEAVKYFKKA 167 (184)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--------chhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34556666666666666666665555421110 000111245688888888888888888764
No 22
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=93.20 E-value=0.48 Score=27.93 Aligned_cols=62 Identities=10% Similarity=-0.038 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 20 VAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 20 ~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
....|..+|......++++-|...|.+.-... ..-+.--...|.++...|++++|...|.++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 64 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--------PQNPVGYSNKAMALIKLGEYTQAIQMCQQG 64 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 35678999999999999999999987652211 011112346799999999999999999875
No 23
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=93.00 E-value=0.61 Score=30.20 Aligned_cols=64 Identities=5% Similarity=-0.096 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 18 PYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 18 ~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
+.++..|..||..-+...+++-|...|.++-... .+...--...|.++...|++++|...|.++
T Consensus 42 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 42 PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--------PKYSKAWSRLGLARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3356667777777777777777776666542111 011112346788888888888888888764
No 24
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=92.80 E-value=0.28 Score=30.27 Aligned_cols=64 Identities=14% Similarity=0.058 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 18 PYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 18 ~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
+..+..|..||..-....+++-|...|.+.-.. --+.+.--...|.++...|++++|...|.++
T Consensus 24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--------FPNHQALRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344677999999999999999999988764211 1111122356799999999999999999875
No 25
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=92.73 E-value=0.41 Score=31.02 Aligned_cols=62 Identities=11% Similarity=0.050 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 20 VAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 20 ~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
....|..+|...+...+++-|...|.+.-+.. -+...--...|.++...|+|++|...|.++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 71 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--------PANPIYLSNRAAAYSASGQHEKAAEDAELA 71 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CcCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 45679999999999999999999998752211 111112356799999999999999999875
No 26
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=92.66 E-value=0.43 Score=30.13 Aligned_cols=65 Identities=11% Similarity=-0.188 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 17 CPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
++.++..|..||......++++-|..+|.+.-... -+-+.--...|.++...|++++|...|.++
T Consensus 47 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--------P~~~~~~~~la~~~~~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 47 EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--------PKDIAVHAALAVSHTNEHNANAALASLRAW 111 (121)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34456667777777777777777777766431110 000112245678888888888888888764
No 27
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=92.57 E-value=0.52 Score=29.94 Aligned_cols=57 Identities=12% Similarity=0.079 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCc---HHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 22 GQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPD---DIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 22 ~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~---~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
.-|+.||......++++-|...|.+.=++ -|+ --...|.++..+|+|++|...|.++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-----------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL-----------DPSNITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 45889999999999999999999864211 122 1235799999999999999988764
No 28
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=92.57 E-value=0.74 Score=27.60 Aligned_cols=62 Identities=13% Similarity=0.032 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 20 VAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 20 ~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
++..|..+|..-....+++-|...|.++-... ......-...|.++...|++++|.+.|.++
T Consensus 49 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 49 DAKLYSNRAACYTKLLEFQLALKDCEECIQLE--------PTFIKGYTRKAAALEAMKDYTKAMDVYQKA 110 (133)
T ss_dssp CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--------CCchHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45667777777777777776666665432210 011112346788888999999999988775
No 29
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=92.54 E-value=0.37 Score=30.75 Aligned_cols=62 Identities=11% Similarity=-0.122 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 20 VAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 20 ~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
...-|..+|...++.++++-|...|.+.=.. --.-+.--...|.++...|++++|...|.++
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 73 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKLMEFQRALDDCDTC 73 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHH
Confidence 3455899999999999999999999865111 0011112245799999999999999999875
No 30
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=92.51 E-value=0.48 Score=29.13 Aligned_cols=61 Identities=15% Similarity=-0.033 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 21 AGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
+..|..+|...+..++++-|...|.+.-+.. .+-+.--...|.++...|++++|...|.++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 64 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--------PEDARGYSNRAAALAKLMSFPEAIADCNKA 64 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4678999999999999999999987642110 011122356799999999999999999775
No 31
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=92.46 E-value=0.89 Score=26.77 Aligned_cols=29 Identities=10% Similarity=-0.063 Sum_probs=20.1
Q ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHc
Q psy11108 19 YVAGQASFLSGVSQKKERFYHVEQALVNC 47 (106)
Q Consensus 19 ~~~~lW~~LA~~AL~~~~l~iAe~Af~rl 47 (106)
..+..|..+|.......+++-|...|.+.
T Consensus 33 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 61 (136)
T 2fo7_A 33 RSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61 (136)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34666777777777777777777776654
No 32
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=92.28 E-value=0.89 Score=26.62 Aligned_cols=61 Identities=13% Similarity=0.069 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 21 AGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
...|..+|.......+++.|...|.+.-+.. ......-...|.++...|++++|..+|.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 69 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5678999999999999999999887652210 011112346788999999999999998774
No 33
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=92.25 E-value=0.53 Score=28.01 Aligned_cols=61 Identities=15% Similarity=0.103 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 21 AGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
+..|..+|.......+++-|...|.++-+.. .....--...|.++...|++++|...|.++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD--------PTNMTYITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4668899999999999999999887653221 011112346789999999999999988774
No 34
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=92.23 E-value=1.1 Score=28.01 Aligned_cols=64 Identities=13% Similarity=-0.025 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 18 PYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 18 ~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
+..+..|..+|...+...+++-|...|.+.-... ...+..-...|.++...|++++|.+.|.++
T Consensus 44 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 107 (166)
T 1a17_A 44 PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--------KKYIKGYYRRAASNMALGKFRAALRDYETV 107 (166)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3346667777777777777777777665432211 001112345677777788888888777664
No 35
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=92.23 E-value=0.7 Score=30.04 Aligned_cols=60 Identities=10% Similarity=-0.026 Sum_probs=40.2
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHcCCc--hhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 20 VAGQASFLSGVSQKKERFYHVEQALVNCQDY--AGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 20 ~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~--~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
++++|-.||..-...++++-|...|.++=+. ... ..-...|.++...|++++|...+.++
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~----------~~~~~la~~~~~~~~~~~a~~~~~~~ 65 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV----------ETLLKLGKTYMDIGLPNDAIESLKKF 65 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4788999999999999999999999875211 111 11234466666666666666665543
No 36
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=92.21 E-value=0.77 Score=26.72 Aligned_cols=61 Identities=7% Similarity=-0.077 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 21 AGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
...|..+|...+...+++-|...|.+.-+.. ..-+.--...|.++...|++++|...|.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 64 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 64 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 5678899999999999999999888653211 011122356788999999999999998774
No 37
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=92.17 E-value=0.39 Score=35.05 Aligned_cols=58 Identities=7% Similarity=-0.078 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11108 18 PYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQ 88 (106)
Q Consensus 18 ~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~ 88 (106)
+.++..|-.||...+..++++-|...|.+-++. +.....|.++.-+|++++|.+.|.+
T Consensus 98 P~~~~~~~~la~~~~~~g~~~~Al~~l~~~~~~-------------~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 98 VTNTTFLLMAASIYFYDQNPDAALRTLHQGDSL-------------ECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHTTCCSH-------------HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHhCCCCH-------------HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 446777888888888888888888777761111 1123345556666666666665554
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=91.97 E-value=0.89 Score=30.36 Aligned_cols=21 Identities=10% Similarity=-0.043 Sum_probs=12.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q psy11108 68 KHAYIAQHQGRFQTAENYQLQ 88 (106)
Q Consensus 68 ~~Aei~ay~Gkf~EAe~i~l~ 88 (106)
..|.++...|++++|...|.+
T Consensus 212 ~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 212 RKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHH
Confidence 455666666666666666554
No 39
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.92 E-value=1.1 Score=27.34 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=15.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 67 MKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 67 ~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
...|.++...|++++|.+.|.++
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 35567777777777777777654
No 40
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=91.88 E-value=1.1 Score=26.41 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=11.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q psy11108 68 KHAYIAQHQGRFQTAENYQLQ 88 (106)
Q Consensus 68 ~~Aei~ay~Gkf~EAe~i~l~ 88 (106)
..|.++...|++++|...|.+
T Consensus 108 ~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 108 NLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp HHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHH
Confidence 345555555555555555544
No 41
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=91.74 E-value=1.1 Score=26.48 Aligned_cols=68 Identities=7% Similarity=0.038 Sum_probs=48.9
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCC----CcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 17 CPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRAL----PDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~----~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
.+.++..|..+|..-....+++-|...|.++-+.. ...... ...-...|.++...|++++|...|.++
T Consensus 34 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 34 DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-----RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----HHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-----cccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34567889999999999999999998887653321 100000 112346799999999999999999874
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=91.68 E-value=1.3 Score=29.96 Aligned_cols=23 Identities=17% Similarity=0.111 Sum_probs=14.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 67 MKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 67 ~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
...|.++...|++++|..+|.++
T Consensus 115 ~~la~~~~~~g~~~~A~~~~~~a 137 (275)
T 1xnf_A 115 LNRGIALYYGGRDKLAQDDLLAF 137 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHH
Confidence 34566666777777777766554
No 43
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=91.61 E-value=1.2 Score=27.99 Aligned_cols=29 Identities=10% Similarity=0.030 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHc
Q psy11108 19 YVAGQASFLSGVSQKKERFYHVEQALVNC 47 (106)
Q Consensus 19 ~~~~lW~~LA~~AL~~~~l~iAe~Af~rl 47 (106)
..+..|..+|.......+++-|...|.++
T Consensus 74 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 102 (186)
T 3as5_A 74 DNVKVATVLGLTYVQVQKYDLAVPLLIKV 102 (186)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34566666666666666666666666543
No 44
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=91.45 E-value=1.4 Score=26.57 Aligned_cols=60 Identities=12% Similarity=0.089 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCC---CcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 22 GQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRAL---PDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 22 ~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~---~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
..|-.+|...+..++++-|...|.++-+. -.+- +..-...|.++...|++++|...|.+.
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSR--------YPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH--------CCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 57889999999999999999888764221 1111 112356799999999999999999764
No 45
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=91.30 E-value=2 Score=27.82 Aligned_cols=62 Identities=16% Similarity=0.228 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcH------HHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 20 VAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDD------IMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 20 ~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~------~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
....|..||.......+++-|...|.+.-+ ..++..++ -...|.++...|++++|...|.++
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 92 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQ--------QAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEE 92 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--------HHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 466799999999999999999988876532 22222221 235789999999999999999875
No 46
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=91.24 E-value=0.57 Score=27.76 Aligned_cols=62 Identities=15% Similarity=-0.016 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 20 VAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 20 ~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
.+..|..+|.......+++-|...|.++-... ......-...|.++...|++++|...|.++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 72 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN--------PANAVYFCNRAAAYSKLGNYAGAVQDCERA 72 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 35668999999999999999998887653210 011112356799999999999999998774
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=91.18 E-value=0.76 Score=30.03 Aligned_cols=23 Identities=13% Similarity=0.052 Sum_probs=15.4
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHHc
Q psy11108 67 MKHAYIAQHQ-GRFQTAENYQLQA 89 (106)
Q Consensus 67 ~~~Aei~ay~-Gkf~EAe~i~l~a 89 (106)
...|.++... |++++|..+|.++
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~ 103 (225)
T 2vq2_A 80 NNYGWFLCGRLNRPAESMAYFDKA 103 (225)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3456666677 7777777777664
No 48
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=91.08 E-value=0.63 Score=30.84 Aligned_cols=63 Identities=8% Similarity=0.030 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 19 YVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 19 ~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
+++..|..+|..-...++++-|...|.+.-... ......-...|.++...|++++|...|.++
T Consensus 35 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 97 (213)
T 1hh8_A 35 PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEA 97 (213)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------ccchHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 467889999999999999999998887642211 111122356799999999999999999875
No 49
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=91.01 E-value=0.7 Score=30.97 Aligned_cols=62 Identities=23% Similarity=0.009 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 20 VAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 20 ~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
++..|-.+|......++++-|...|.++-..+- .-+.--...|.++...|+|++|...|.++
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P--------~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a 96 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF--------YNVDYIMGLAAIYQIKEQFQQAADLYAVA 96 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 455699999999999999999999986522110 01112245799999999999999999875
No 50
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=90.96 E-value=1.1 Score=30.72 Aligned_cols=64 Identities=17% Similarity=-0.014 Sum_probs=47.8
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 17 CPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
++.++..|..||..-...++++-|..+|.+.-... +-+.--...|.++.-.|++++|...|.++
T Consensus 114 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------~~~~~~~~la~~~~~~g~~~~A~~~~~~a 177 (217)
T 2pl2_A 114 NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE---------DTPEIRSALAELYLSMGRLDEALAQYAKA 177 (217)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---------cchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45668889999999999999999999998652221 11112245788888899999998888764
No 51
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=90.88 E-value=1.7 Score=27.14 Aligned_cols=29 Identities=14% Similarity=-0.031 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHc
Q psy11108 19 YVAGQASFLSGVSQKKERFYHVEQALVNC 47 (106)
Q Consensus 19 ~~~~lW~~LA~~AL~~~~l~iAe~Af~rl 47 (106)
..+..|..+|.......+++-|...|.++
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 68 (186)
T 3as5_A 40 FDVDVALHLGIAYVKTGAVDRGTELLERS 68 (186)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45677888888888888888888877654
No 52
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=90.83 E-value=0.41 Score=28.82 Aligned_cols=64 Identities=11% Similarity=-0.083 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 18 PYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 18 ~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
+.+..-|..+|...+...+++-|...|.+.-+..- +-..--...|.++...|++++|.++|.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~a 76 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP--------KDAKLYSNRAACYTKLLEFQLALKDCEEC 76 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT--------TCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--------CcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34466799999999999999999999887533211 00112345788888999999999998764
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=90.75 E-value=1.4 Score=29.22 Aligned_cols=21 Identities=10% Similarity=-0.051 Sum_probs=11.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q psy11108 68 KHAYIAQHQGRFQTAENYQLQ 88 (106)
Q Consensus 68 ~~Aei~ay~Gkf~EAe~i~l~ 88 (106)
..|.++...|++++|..+|.+
T Consensus 130 ~~a~~~~~~~~~~~A~~~~~~ 150 (243)
T 2q7f_A 130 MLGTVLVKLEQPKLALPYLQR 150 (243)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHH
Confidence 345555555555555555544
No 54
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=90.75 E-value=1.4 Score=27.53 Aligned_cols=61 Identities=7% Similarity=-0.100 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 21 AGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
...|..+|...+...+++-|...|.+.-+.. .....--...|.++...|++++|...|.++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 73 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN--------PSNAIYYGNRSLAYLRTECYGYALGDATRA 73 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4569999999999999999999988653211 011112346789999999999999998774
No 55
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=90.68 E-value=1.3 Score=30.40 Aligned_cols=61 Identities=10% Similarity=-0.068 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCc---HHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 18 PYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPD---DIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 18 ~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~---~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
++++..|..+|...+..++++-|...|.+.-. .-|+ --...|.++.-+|++++|...|.++
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 65 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALK-----------ENPQDPEALYWLARTQLKLGLVNPALENGKTL 65 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT-----------TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45677899999999999999999988875421 1121 2245789999999999999998774
No 56
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=90.56 E-value=0.82 Score=42.68 Aligned_cols=68 Identities=12% Similarity=0.071 Sum_probs=51.9
Q ss_pred HhhhhhhhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHH
Q psy11108 8 IASRHSFVLCPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQL 87 (106)
Q Consensus 8 ~~~~~~f~~~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l 87 (106)
+..|.+|.+....+..|..||..=+..++++-|..+|.+.+|.+.+. ..|+.+.-.|+|+||-+.|.
T Consensus 1092 ldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~-------------eVa~~~~~lGkyEEAIeyL~ 1158 (1630)
T 1xi4_A 1092 LDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYM-------------EVVQAANTSGNWEELVKYLQ 1158 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHH-------------HHHHHHHHcCCHHHHHHHHH
Confidence 56788888888889999999999999999999999999988876532 13445555555555555554
Q ss_pred H
Q psy11108 88 Q 88 (106)
Q Consensus 88 ~ 88 (106)
.
T Consensus 1159 m 1159 (1630)
T 1xi4_A 1159 M 1159 (1630)
T ss_pred H
Confidence 4
No 57
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=90.50 E-value=1 Score=32.52 Aligned_cols=66 Identities=9% Similarity=-0.100 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHcCC
Q psy11108 18 PYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQADR 91 (106)
Q Consensus 18 ~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~ag~ 91 (106)
+..+..+-.+|..++..++++-|+..|.++-. .--+-+.-....|.++.-+|++++|..+|.+.-.
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--------~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQ--------LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--------hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 34456688999999999999999998887511 1001112235679999999999999999988643
No 58
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=90.44 E-value=1.3 Score=31.89 Aligned_cols=65 Identities=11% Similarity=-0.078 Sum_probs=49.1
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 17 CPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
.+.++..|..+|...+...+++-|...|.+.-...- +-..--...|.++...|++++|...|.++
T Consensus 34 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 34 NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG--------QSVKAHFFLGQCQLEMESYDEAIANLQRA 98 (281)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455688899999999999999999888877644321 00112356799999999999999999875
No 59
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=90.35 E-value=1.6 Score=29.48 Aligned_cols=64 Identities=16% Similarity=0.040 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 18 PYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 18 ~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
+..+..|..+|.......+++-|...|.++-+.. .....--...|.++...|++++|.++|.++
T Consensus 68 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 131 (252)
T 2ho1_A 68 PSSADAHAALAVVFQTEMEPKLADEEYRKALASD--------SRNARVLNNYGGFLYEQKRYEEAYQRLLEA 131 (252)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3446677778877777777777777776542110 000011123455666666666666666554
No 60
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=90.32 E-value=2.1 Score=29.64 Aligned_cols=26 Identities=4% Similarity=-0.185 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHH
Q psy11108 21 AGQASFLSGVSQKKERFYHVEQALVN 46 (106)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~Af~r 46 (106)
+..|..+|..-....+++-|...|.+
T Consensus 125 ~~~~~~l~~~~~~~~~~~~A~~~~~~ 150 (330)
T 3hym_B 125 GPAWIAYGHSFAVESEHDQAMAAYFT 150 (330)
T ss_dssp THHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44455555555555555555555443
No 61
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=90.20 E-value=1.5 Score=30.30 Aligned_cols=21 Identities=10% Similarity=0.113 Sum_probs=13.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q psy11108 68 KHAYIAQHQGRFQTAENYQLQ 88 (106)
Q Consensus 68 ~~Aei~ay~Gkf~EAe~i~l~ 88 (106)
..|.++...|++++|.+.|.+
T Consensus 245 ~l~~~~~~~g~~~~A~~~~~~ 265 (327)
T 3cv0_A 245 NMAVSYSNMSQYDLAAKQLVR 265 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHH
Confidence 456666666777777666655
No 62
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=90.14 E-value=0.71 Score=30.05 Aligned_cols=61 Identities=11% Similarity=0.048 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHH
Q psy11108 19 YVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQL 87 (106)
Q Consensus 19 ~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l 87 (106)
.++..|..||..-....+++-|..+|.++-+.. -+-++.-...|.++.-.|++++|.+.|+
T Consensus 63 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~aa~~~~ 123 (150)
T 4ga2_A 63 RDPKAHRFLGLLYELEENTDKAVECYRRSVELN--------PTQKDLVLKIAELLCKNDVTDGRAKYWV 123 (150)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHCSSSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 345555555555555555555555554331100 0001112344566666666666555543
No 63
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=90.14 E-value=0.69 Score=26.77 Aligned_cols=66 Identities=14% Similarity=-0.056 Sum_probs=47.5
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHc-CCHHHHHHHHHHc
Q psy11108 18 PYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQ-GRFQTAENYQLQA 89 (106)
Q Consensus 18 ~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~-Gkf~EAe~i~l~a 89 (106)
+..+..|..+|..-....+++-|...|.+.-....- .....--...|.++... |++++|.+.|.+.
T Consensus 37 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 37 PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED------EYNKDVWAAKADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC------TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc------cchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 445778999999999999999999888765222100 00111234678999999 9999999999875
No 64
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=90.04 E-value=1.8 Score=28.70 Aligned_cols=65 Identities=5% Similarity=-0.086 Sum_probs=47.8
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 17 CPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
.+..+..|..+|.......+++-|...|.++-+.. ......-...|.++...|++++|.++|.++
T Consensus 53 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 117 (243)
T 2q7f_A 53 NKEDAIPYINFANLLSSVNELERALAFYDKALELD--------SSAATAYYGAGNVYVVKEMYKEAKDMFEKA 117 (243)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34457889999999999999999998887653221 111122346789999999999999999874
No 65
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=89.90 E-value=1.4 Score=30.48 Aligned_cols=31 Identities=10% Similarity=-0.103 Sum_probs=24.2
Q ss_pred CCCCHHHHHHHHHHHHhcc-cHHHHHHHHHHc
Q psy11108 17 CPYVAGQASFLSGVSQKKE-RFYHVEQALVNC 47 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~-~l~iAe~Af~rl 47 (106)
.+.++..|..+|....... +++.|...|.++
T Consensus 86 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a 117 (330)
T 3hym_B 86 YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKA 117 (330)
T ss_dssp CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3445777889998888888 888888888765
No 66
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=89.87 E-value=1.5 Score=31.46 Aligned_cols=23 Identities=17% Similarity=-0.097 Sum_probs=16.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 67 MKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 67 ~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
...|.++...|++++|..+|.++
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~a 159 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNW 159 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHH
Confidence 45677777788888888777664
No 67
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=89.86 E-value=2.2 Score=27.58 Aligned_cols=60 Identities=15% Similarity=0.073 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHH------HHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 22 GQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDI------MKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 22 ~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~------~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
..+..||.......+++-|...|.+.-+ . .+...++. ...|.++...|++++|...|.++
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~---~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLV-----Y---AQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH-----H---HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH-----H---HHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3478889999999999999888876522 1 22223322 46799999999999999888775
No 68
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=89.84 E-value=1.5 Score=28.62 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=13.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q psy11108 68 KHAYIAQHQGRFQTAENYQLQ 88 (106)
Q Consensus 68 ~~Aei~ay~Gkf~EAe~i~l~ 88 (106)
..|.++...|++++|..+|.+
T Consensus 152 ~la~~~~~~~~~~~A~~~~~~ 172 (225)
T 2vq2_A 152 ELARTKMLAGQLGDADYYFKK 172 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 446666666666666666655
No 69
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.77 E-value=2.2 Score=25.96 Aligned_cols=68 Identities=10% Similarity=-0.122 Sum_probs=50.2
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 17 CPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
.+.....|..+|...+...+++-|...|.++-+..--.- ....--...|.++...|++++|...|.++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 91 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQ-----DQAVLHRNRAACHLKLEDYDKAETEASKA 91 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccch-----HHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 345678899999999999999999999997744321100 00112245789999999999999998774
No 70
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=89.68 E-value=1 Score=30.28 Aligned_cols=65 Identities=15% Similarity=0.202 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCc-----HHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 20 VAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPD-----DIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 20 ~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~-----~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
....|..||..-....+++-|...|.+.- .+.+++...++ .-...|.++..+|++++|..+|.++
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 111 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDAL-----AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRA 111 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHH-----HHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 35669999999999999999999998752 33333311111 1246799999999999999999875
No 71
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=89.58 E-value=1.2 Score=29.07 Aligned_cols=62 Identities=8% Similarity=-0.088 Sum_probs=45.5
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 20 VAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 20 ~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
+...|-.+|...+..++++-|...|.++-... -.-+.--...|.++...|++++|...|.++
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 81 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--------HYDSRFFLGLGACRQAMGQYDLAIHSYSYG 81 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--------cccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35568889999999999999999987542110 000111245789999999999999999875
No 72
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=89.45 E-value=2.9 Score=28.11 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHcCC
Q psy11108 19 YVAGQASFLSGVSQKKERFYHVEQALVNCQD 49 (106)
Q Consensus 19 ~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d 49 (106)
..+..|..||..-....+++-|...|.++-+
T Consensus 103 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 103 RNARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3466677777777777777777777766543
No 73
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=89.12 E-value=1.2 Score=31.94 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=13.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHc
Q psy11108 68 KHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 68 ~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
..|.++...|++++|...|.++
T Consensus 286 ~l~~~~~~~g~~~~A~~~~~~a 307 (365)
T 4eqf_A 286 NLGISCINLGAYREAVSNFLTA 307 (365)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 4566666666666666666553
No 74
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=88.97 E-value=1.9 Score=30.70 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=14.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 67 MKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 67 ~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
...|.++...|++++|...|.++
T Consensus 289 ~~l~~~~~~~g~~~~A~~~~~~a 311 (368)
T 1fch_A 289 YNLGISCINLGAHREAVEHFLEA 311 (368)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 34566666777777777666553
No 75
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=88.96 E-value=2.5 Score=25.41 Aligned_cols=58 Identities=12% Similarity=-0.037 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCC---cHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 24 ASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALP---DDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 24 W~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~---~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
+-.+|...+..++++-|...|.++- +.-.+-+ .--...|.++...|++++|...|.+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~--------~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~ 65 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFL--------ELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDL 65 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH--------HHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH--------HHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4567888889999999998887642 1111111 23357899999999999999999774
No 76
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=88.94 E-value=1.9 Score=30.09 Aligned_cols=65 Identities=11% Similarity=-0.040 Sum_probs=47.7
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 17 CPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
.+.++..|..+|...+..++++-|...|.++-+. -...+.--...|.++...|++++|...|.++
T Consensus 33 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 97 (359)
T 3ieg_A 33 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKV 97 (359)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCcchHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4456788999999999999999888888764221 0111122356789999999999999999875
No 77
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=88.90 E-value=1.1 Score=32.95 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=16.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 67 MKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 67 ~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
...|.++..+|++++|.+.|.++
T Consensus 98 ~~l~~~~~~~g~~~~A~~~~~~~ 120 (450)
T 2y4t_A 98 LQRGHLLLKQGKLDEAEDDFKKV 120 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 35677777778888888777765
No 78
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=88.87 E-value=1.2 Score=27.99 Aligned_cols=60 Identities=7% Similarity=-0.187 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 22 GQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 22 ~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
..|-.+|...+..++++-|...|.+.= +.--+-..--...|.++...|++++|...|.++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al--------~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 77 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVC--------QKEPEREEAWRSLGLTQAENEKDGLAIIALNHA 77 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHH--------HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHH--------HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 358889999999999999998887541 110011112356799999999999999999875
No 79
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=88.85 E-value=2.2 Score=29.45 Aligned_cols=64 Identities=11% Similarity=-0.175 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 18 PYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 18 ~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
+.++..|..+|.......+++-|...|.+.-... ......-...|.++...|++++|.+.|.++
T Consensus 52 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 115 (327)
T 3cv0_A 52 PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--------PKDIAVHAALAVSHTNEHNANAALASLRAW 115 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445667777777777777777777666542110 001112345688889999999999988774
No 80
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=88.74 E-value=1.5 Score=27.73 Aligned_cols=62 Identities=8% Similarity=-0.078 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 20 VAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 20 ~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
+...|-.+|...+..++++-|...|.++-... -.-+.--...|.++.-.|++++|...|.++
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 78 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD--------HYDARYFLGLGACRQSLGLYEQALQSYSYG 78 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34568889999999999999999887532110 001112245789999999999999988774
No 81
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=88.73 E-value=2.2 Score=27.91 Aligned_cols=73 Identities=15% Similarity=-0.012 Sum_probs=51.3
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCch----h------hHHHHH------------hhC-CCc---HHHHHH
Q psy11108 17 CPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYA----G------LQLIKS------------LRA-LPD---DIMKHA 70 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~----~------v~~I~~------------l~~-~~~---~~~~~A 70 (106)
++.++..|..||...+..++++-|...|.++-... . +.+... .-+ -|+ -....|
T Consensus 36 ~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la 115 (176)
T 2r5s_A 36 LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELA 115 (176)
T ss_dssp HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45567889999999999999999999998764332 1 111111 111 121 124678
Q ss_pred HHHHHcCCHHHHHHHHHHc
Q psy11108 71 YIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 71 ei~ay~Gkf~EAe~i~l~a 89 (106)
.++...|++++|...|.+.
T Consensus 116 ~~~~~~g~~~~A~~~~~~~ 134 (176)
T 2r5s_A 116 VQYNQVGRDEEALELLWNI 134 (176)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHH
Confidence 9999999999999999874
No 82
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=88.71 E-value=1.6 Score=31.38 Aligned_cols=73 Identities=14% Similarity=0.057 Sum_probs=52.8
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchh----------------------hHHHHH-hhCCCc---HHHHHH
Q psy11108 17 CPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAG----------------------LQLIKS-LRALPD---DIMKHA 70 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~----------------------v~~I~~-l~~~~~---~~~~~A 70 (106)
++.++..|..||...+..++++-|...|.++-...- +..+++ ++.-|+ -....|
T Consensus 147 ~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la 226 (287)
T 3qou_A 147 SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLA 226 (287)
T ss_dssp TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHH
Confidence 566788899999999999999999999998744221 111111 112222 234678
Q ss_pred HHHHHcCCHHHHHHHHHHc
Q psy11108 71 YIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 71 ei~ay~Gkf~EAe~i~l~a 89 (106)
.++.-.|++++|...|.+.
T Consensus 227 ~~l~~~g~~~~A~~~l~~~ 245 (287)
T 3qou_A 227 LQLHQVGRNEEALELLFGH 245 (287)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHH
Confidence 9999999999999999874
No 83
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=88.52 E-value=1.3 Score=30.40 Aligned_cols=64 Identities=11% Similarity=0.013 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCc-----HHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 21 AGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPD-----DIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~-----~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
...|..||.......+++-|...|.++- .+........+ --...|.++...|++++|..+|.++
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~-----~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 95 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQAL-----EDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDA 95 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5668999999999999999999998653 33333331111 1246789999999999999999875
No 84
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=88.44 E-value=2.1 Score=31.40 Aligned_cols=66 Identities=8% Similarity=-0.160 Sum_probs=46.2
Q ss_pred cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 16 LCPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 16 ~~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
.++..+..|..+|...+..++++-|...|.++-+. -......-...|.++...|++++|..+|.++
T Consensus 21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44455677999999999999999999999865211 0011112345788888999999999888764
No 85
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=88.33 E-value=2.4 Score=30.14 Aligned_cols=23 Identities=13% Similarity=-0.109 Sum_probs=17.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 67 MKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 67 ~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
...|.++...|++++|...|.++
T Consensus 136 ~~l~~~~~~~g~~~~A~~~~~~~ 158 (368)
T 1fch_A 136 MALAVSFTNESLQRQACEILRDW 158 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 45677788888888888888764
No 86
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=88.27 E-value=1.4 Score=29.43 Aligned_cols=63 Identities=14% Similarity=-0.055 Sum_probs=47.3
Q ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 19 YVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 19 ~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
..+..|..+|...+...+++-|...|.++-+.. ...+.--...|.++...|++++|.+.|.++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--------PEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 346679999999999999999998888653211 111122356799999999999999999875
No 87
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=88.14 E-value=3.9 Score=26.81 Aligned_cols=72 Identities=10% Similarity=-0.028 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchh----hHHHHHhhCC-C---cHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 18 PYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAG----LQLIKSLRAL-P---DDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 18 ~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~----v~~I~~l~~~-~---~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
+..+..|..+|..-....+++-|...|.++-+..- +.+-..-... + ..-...|.++...|++++|...|.++
T Consensus 68 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 45678899999999999999999998876532110 0000000000 0 22357899999999999999999885
No 88
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=87.86 E-value=1.5 Score=29.84 Aligned_cols=55 Identities=13% Similarity=-0.023 Sum_probs=40.1
Q ss_pred HHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 27 LSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 27 LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
||..-...++++-|...|.+.-... -+-.+--...|.++...|++++|...|.++
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 114 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA--------PNNVDCLEACAEMQVCRGQEKDALRMYEKI 114 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8988889999999988887642110 011112356799999999999999999875
No 89
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=87.53 E-value=2.2 Score=27.37 Aligned_cols=61 Identities=8% Similarity=-0.044 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 21 AGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
...|..+|..-+...+++-|...|.++=..+ -.....-...|.++...|+|++|...|.++
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~--------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE--------ETNEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC--------CcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 4678888988888888888887776542110 011123367899999999999999999875
No 90
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=87.14 E-value=2 Score=31.91 Aligned_cols=65 Identities=12% Similarity=-0.022 Sum_probs=48.7
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 17 CPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
..|.+..|..+|...+..++++-|...|.++-+.. -+...--...|.++..+|++++|...|.+.
T Consensus 35 ~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 99 (514)
T 2gw1_A 35 LKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--------PDYSKVLLRRASANEGLGKFADAMFDLSVL 99 (514)
T ss_dssp HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34678889999999999999999998887653210 011112356899999999999999999875
No 91
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=86.96 E-value=2.7 Score=27.50 Aligned_cols=64 Identities=14% Similarity=-0.090 Sum_probs=45.7
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCc--HHHHHHHHHHHcCCHHHHHHHHHH
Q psy11108 17 CPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPD--DIMKHAYIAQHQGRFQTAENYQLQ 88 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~--~~~~~Aei~ay~Gkf~EAe~i~l~ 88 (106)
.+.++..|-.||..-...++++-|...|.++-... -.-.+ -....|.++...|++++|...|.+
T Consensus 104 ~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 104 NPDNFELACELAVQYNQVGRDEEALELLWNILKVN--------LGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------TTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--------cccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 34567888899998888899998888887542111 00011 234568999999999999999976
No 92
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=86.66 E-value=2.3 Score=24.70 Aligned_cols=55 Identities=16% Similarity=-0.013 Sum_probs=37.6
Q ss_pred HHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCc-HHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 27 LSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPD-DIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 27 LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~-~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
+|...+...+++-|...|.++-+.. -+-.. --...|.++...|++++|.+.|.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE--------PVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--------SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5666777788888888776542110 00111 2346799999999999999999875
No 93
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=86.53 E-value=2.1 Score=28.80 Aligned_cols=60 Identities=3% Similarity=-0.136 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCc---HHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 19 YVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPD---DIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 19 ~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~---~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
+.+..|-.+|.......+++-|...|.+.- +.-|+ --...|.++..+|++++|.+.|.++
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-----------~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 102 (228)
T 4i17_A 40 QDSVTAYNCGVCADNIKKYKEAADYFDIAI-----------KKNYNLANAYIGKSAAYRDMKNNQEYIATLTEG 102 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------HTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhcHHHHHHHHHHHH-----------HhCcchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 445555556666666666665555554331 11122 2346788888888888888888764
No 94
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=86.38 E-value=4 Score=26.97 Aligned_cols=27 Identities=11% Similarity=-0.156 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHc
Q psy11108 21 AGQASFLSGVSQKKERFYHVEQALVNC 47 (106)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~Af~rl 47 (106)
...|..+|...+...+++-|...|.+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~a 64 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEA 64 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345889999999999999999999865
No 95
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=86.34 E-value=1.7 Score=28.88 Aligned_cols=60 Identities=10% Similarity=0.021 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 22 GQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 22 ~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
..|..+|...+...+++-|...|.++-... ......-...|.++...|++++|...|.++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID--------KNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 678999999999999999988887653221 011123357899999999999999999875
No 96
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=86.34 E-value=5 Score=27.14 Aligned_cols=23 Identities=17% Similarity=0.154 Sum_probs=15.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 67 MKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 67 ~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
...|.++...|++++|...|.++
T Consensus 112 ~~l~~~~~~~~~~~~A~~~~~~a 134 (272)
T 3u4t_A 112 GQIGSYFYNKGNFPLAIQYMEKQ 134 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHGGG
T ss_pred HHHHHHHHHccCHHHHHHHHHHH
Confidence 34566666777777777776654
No 97
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=86.26 E-value=5.8 Score=27.59 Aligned_cols=63 Identities=13% Similarity=0.011 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcH--H-----HHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 23 QASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDD--I-----MKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 23 lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~--~-----~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
.|..+|..-..-.+++-|..+|.+.=++ |=++++--|+. . ..+|.++.-.|+++||...|.++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l----~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHY----FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh----hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 8999999999999999999999876322 22223223332 2 47899999999999999999886
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=86.18 E-value=1.5 Score=28.42 Aligned_cols=61 Identities=3% Similarity=0.010 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 21 AGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
+..|-.||..-.+..+++-|...|.++=... -+-+.--...|.++...|++++|...|.++
T Consensus 31 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 91 (150)
T 4ga2_A 31 SIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--------ERDPKAHRFLGLLYELEENTDKAVECYRRS 91 (150)
T ss_dssp HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 3347788999999999999998887652110 011122356899999999999999999875
No 99
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=86.07 E-value=1.9 Score=29.80 Aligned_cols=23 Identities=13% Similarity=-0.015 Sum_probs=15.2
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHc
Q psy11108 67 MKHAYIAQH----QGRFQTAENYQLQA 89 (106)
Q Consensus 67 ~~~Aei~ay----~Gkf~EAe~i~l~a 89 (106)
...|.++.. .|++++|...|.++
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a 104 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKA 104 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHH
Confidence 345666666 77777777777664
No 100
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=86.06 E-value=5.8 Score=26.46 Aligned_cols=64 Identities=17% Similarity=0.197 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcH-----HHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 21 AGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDD-----IMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~-----~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
...|..||..-....+++-|...|.+.- ...+++..-.++ -...|.++...|++++|..+|.++
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 153 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRAL-----EIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA 153 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHH-----HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHH-----HHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5568999999999999999999988753 223333222222 246789999999999999999875
No 101
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=86.02 E-value=4.2 Score=26.13 Aligned_cols=73 Identities=16% Similarity=0.055 Sum_probs=46.6
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHcC-----Cchh--------------------hHHHHHhhCC-Cc---HHH
Q psy11108 17 CPYVAGQASFLSGVSQKKERFYHVEQALVNCQ-----DYAG--------------------LQLIKSLRAL-PD---DIM 67 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~-----d~~~--------------------v~~I~~l~~~-~~---~~~ 67 (106)
.+..+..|..||...+...+++-|..+|.+.- +... +..+++.-.+ |+ .-.
T Consensus 40 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 119 (177)
T 2e2e_A 40 NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM 119 (177)
T ss_dssp CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHH
Confidence 34567889999999999999999988877542 1111 1111111111 11 113
Q ss_pred HHHHHHHHcCCHHHHHHHHHHc
Q psy11108 68 KHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 68 ~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
..|.++...|++++|...|.++
T Consensus 120 ~la~~~~~~g~~~~A~~~~~~a 141 (177)
T 2e2e_A 120 LLASDAFMQANYAQAIELWQKV 141 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHH
Confidence 5678888888888888888764
No 102
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=85.63 E-value=2.3 Score=28.78 Aligned_cols=62 Identities=8% Similarity=-0.082 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 20 VAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 20 ~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
.+..|..+|......++++-|...|.+.-+.. ......-...|.++...|++++|...|.++
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 103 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIR--------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSV 103 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 46779999999999999999999987653211 011112346799999999999999999874
No 103
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=85.58 E-value=2.5 Score=30.71 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHc
Q psy11108 17 CPYVAGQASFLSGVSQKKERFYHVEQALVNC 47 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl 47 (106)
.+..+..|..||..-...++++-|...|.+.
T Consensus 63 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 93 (388)
T 1w3b_A 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHA 93 (388)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4556777888888888888888888887754
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=85.32 E-value=2.4 Score=33.22 Aligned_cols=29 Identities=10% Similarity=-0.213 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHc
Q psy11108 19 YVAGQASFLSGVSQKKERFYHVEQALVNC 47 (106)
Q Consensus 19 ~~~~lW~~LA~~AL~~~~l~iAe~Af~rl 47 (106)
.....|..||...+...+++-|...|.+.
T Consensus 21 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 49 (568)
T 2vsy_A 21 QDFVAWLMLADAELGMGDTTAGEMAVQRG 49 (568)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34666777777777777777777777654
No 105
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=85.17 E-value=3.6 Score=28.57 Aligned_cols=61 Identities=8% Similarity=-0.124 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 21 AGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
+..|-.+|...+..++++-|...|.++-+. -.+.+.--...|.++...|++++|...|.++
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 63 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAMGKSKAALPDLTKV 63 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 567899999999999999999999875221 1111123457899999999999999999774
No 106
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=85.15 E-value=5.2 Score=29.96 Aligned_cols=30 Identities=3% Similarity=-0.014 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHc
Q psy11108 18 PYVAGQASFLSGVSQKKERFYHVEQALVNC 47 (106)
Q Consensus 18 ~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl 47 (106)
+..+..|..+|.......+++-|...|.++
T Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 336 (537)
T 3fp2_A 307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKA 336 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344667777777777777777777777654
No 107
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=85.10 E-value=1.6 Score=29.76 Aligned_cols=67 Identities=9% Similarity=-0.079 Sum_probs=47.1
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 18 PYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 18 ~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
+..+..|..||..-....+++-|...|.++-+... .-.-....-...|.++...|++++|.+.|.++
T Consensus 34 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 100 (272)
T 3u4t_A 34 YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN-----ATKAKSADFEYYGKILMKKGQDSLAIQQYQAA 100 (272)
T ss_dssp CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSC-----TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccC-----chhHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 34456799999999999999999888876533110 00000111357899999999999999999875
No 108
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=85.01 E-value=4.6 Score=28.93 Aligned_cols=64 Identities=6% Similarity=-0.162 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHcCC
Q psy11108 20 VAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQADR 91 (106)
Q Consensus 20 ~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~ag~ 91 (106)
....|..+|......++++-|...|.+.-... -....--...|.++...|++++|...|.++=.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 66 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--------PLVAVYYTNRALCYLKMQQPEQALADCRRALE 66 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 46778999999999999999999987542210 00111224579999999999999999988643
No 109
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=85.00 E-value=1.8 Score=36.47 Aligned_cols=28 Identities=7% Similarity=0.048 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHH
Q psy11108 19 YVAGQASFLSGVSQKKERFYHVEQALVN 46 (106)
Q Consensus 19 ~~~~lW~~LA~~AL~~~~l~iAe~Af~r 46 (106)
.++..|..||..-.+.++++-|..+|.+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~k 34 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRK 34 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3455566666666666666666666654
No 110
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=84.98 E-value=3 Score=27.99 Aligned_cols=64 Identities=8% Similarity=-0.018 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 19 YVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 19 ~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
..|..|-.+|...+...+++-|...|.++-+... ..-+..-...|.++...|++++|.+.|.++
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 68 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-------NQDSVTAYNCGVCADNIKKYKEAADYFDIA 68 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-------TCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-------CCCcHHHHHHHHHHHHhhcHHHHHHHHHHH
Confidence 3467899999999999999999999987533221 011122345799999999999999999875
No 111
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=84.83 E-value=4.4 Score=26.01 Aligned_cols=30 Identities=10% Similarity=-0.039 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHH-HHhcccH--HHHHHHHHHc
Q psy11108 18 PYVAGQASFLSGV-SQKKERF--YHVEQALVNC 47 (106)
Q Consensus 18 ~~~~~lW~~LA~~-AL~~~~l--~iAe~Af~rl 47 (106)
+.++..|..+|.. .....++ +-|...|.+.
T Consensus 75 p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~a 107 (177)
T 2e2e_A 75 GENAELYAALATVLYYQASQHMTAQTRAMIDKA 107 (177)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 3456778888887 6677776 7777777654
No 112
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=84.78 E-value=4.1 Score=29.49 Aligned_cols=65 Identities=14% Similarity=0.080 Sum_probs=40.1
Q ss_pred cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11108 16 LCPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQ 88 (106)
Q Consensus 16 ~~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~ 88 (106)
..+.++..|..|+...+...+++-|...|...-. .-......-...|.++.-.|++++|...|.+
T Consensus 28 ~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~--------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 92 (388)
T 1w3b_A 28 QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--------QNPLLAEAYSNLGNVYKERGQLQEAIEHYRH 92 (388)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------cCCCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3566678899999999999999988877754311 0000011123456666666666666666554
No 113
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=84.09 E-value=5.1 Score=24.12 Aligned_cols=63 Identities=14% Similarity=-0.002 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCC---cHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 22 GQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALP---DDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 22 ~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~---~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
..|..+|..-....+++-|...|.+.-+. ........ .--...|.++...|++++|...|.++
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 75 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLI-----AKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT 75 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----HHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45777888888888888888777654222 11111000 01234567777777777777766653
No 114
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=83.51 E-value=2.5 Score=33.26 Aligned_cols=65 Identities=12% Similarity=-0.053 Sum_probs=46.6
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 17 CPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
.+.++..|..||..-+...+++-|...|.+.-...- +....-...|.++..+|++++|.+.|.++
T Consensus 36 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--------~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 100 (477)
T 1wao_1 36 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK--------KYIKGYYRRAASNMALGKFRAALRDYETV 100 (477)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445588899999999999999999988876522210 00112245688888889999988888764
No 115
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=82.94 E-value=4.8 Score=30.12 Aligned_cols=63 Identities=13% Similarity=0.022 Sum_probs=47.1
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHH
Q psy11108 17 CPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQL 87 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l 87 (106)
.+.++..|..+|..-+..++++-|...|.++-... .+-..--...|.++...|++++|...|.
T Consensus 55 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 55 DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--------PDHSKALLRRASANESLGNFTDAMFDLS 117 (537)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35568889999999999999999999888752211 0111123568999999999999999884
No 116
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=82.36 E-value=4.1 Score=27.83 Aligned_cols=64 Identities=16% Similarity=0.214 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCc-----HHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 21 AGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPD-----DIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~-----~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
...|..||.......+++-|...|.+. +...++...-++ .-...|.++...|++++|..+|.++
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~a-----l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 137 (311)
T 3nf1_A 69 ATMLNILALVYRDQNKYKDAANLLNDA-----LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRA 137 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH-----HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 556889999999999999999988764 233333311111 2246789999999999999999875
No 117
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=82.17 E-value=5.3 Score=29.53 Aligned_cols=23 Identities=22% Similarity=0.013 Sum_probs=18.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 67 MKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 67 ~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
...|.++...|++++|..+|.++
T Consensus 376 ~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 376 NFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 45688888999999999888764
No 118
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=81.97 E-value=2.8 Score=32.61 Aligned_cols=68 Identities=12% Similarity=-0.039 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHHHHHhc--------ccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11108 17 CPYVAGQASFLSGVSQKK--------ERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQ 88 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~--------~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~ 88 (106)
++.++..|..||..-+.. .+++-|..+|.+.-...-- ....+.--...|.++...|++++|...|.+
T Consensus 209 ~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 283 (474)
T 4abn_A 209 DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK-----ASSNPDLHLNRATLHKYEESYGEALEGFSQ 283 (474)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG-----GGGCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC-----cccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455688899999999988 8999999998865332110 001112235678888899999999988877
Q ss_pred c
Q psy11108 89 A 89 (106)
Q Consensus 89 a 89 (106)
+
T Consensus 284 a 284 (474)
T 4abn_A 284 A 284 (474)
T ss_dssp H
T ss_pred H
Confidence 5
No 119
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=81.85 E-value=0.98 Score=42.18 Aligned_cols=91 Identities=12% Similarity=-0.008 Sum_probs=59.8
Q ss_pred hhhcCCCCHHHHHHHH------HHHHhcc-------------cHHHHHHHHHHcCCchhh-HHHHHhhCCCc-----HHH
Q psy11108 13 SFVLCPYVAGQASFLS------GVSQKKE-------------RFYHVEQALVNCQDYAGL-QLIKSLRALPD-----DIM 67 (106)
Q Consensus 13 ~f~~~~~~~~lW~~LA------~~AL~~~-------------~l~iAe~Af~rl~d~~~v-~~I~~l~~~~~-----~~~ 67 (106)
.|.-....+.||...- ..-|... +..++-++|...+++.-+ .+++++---++ +++
T Consensus 945 rylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~L 1024 (1630)
T 1xi4_A 945 RYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNL 1024 (1630)
T ss_pred HHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHH
Confidence 4444556677776654 3334433 567777777777776543 55555542222 011
Q ss_pred -----------------------------HHHHHHHHcCCHHHHHHHHHHcCCcccccc-----CCCccc
Q psy11108 68 -----------------------------KHAYIAQHQGRFQTAENYQLQADRRTWKSK-----PSYWTR 103 (106)
Q Consensus 68 -----------------------------~~Aei~ay~Gkf~EAe~i~l~ag~~~~Aie-----mr~W~r 103 (106)
..|.++.-.|.|+||..+|.++++.+.|++ +.+|+|
T Consensus 1025 qnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldr 1094 (1630)
T 1xi4_A 1025 QNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDR 1094 (1630)
T ss_pred HHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHH
Confidence 138999999999999999999999988755 557776
No 120
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=81.77 E-value=5.9 Score=28.66 Aligned_cols=62 Identities=8% Similarity=-0.043 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCC---cHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11108 22 GQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALP---DDIMKHAYIAQHQGRFQTAENYQLQ 88 (106)
Q Consensus 22 ~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~---~~~~~~Aei~ay~Gkf~EAe~i~l~ 88 (106)
..|..||...+...+++-|...|.+.-+. ........ ..-...|.++..+|++++|..+|.+
T Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 224 RACGNLGNTYYLLGDFQAAIEHHQERLRI-----AREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 46888999999999999999888764221 11111000 0223456666667777776666654
No 121
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=81.62 E-value=3 Score=31.96 Aligned_cols=61 Identities=13% Similarity=-0.077 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 21 AGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
...|..|+......++++-|...|.++-+.. .+-+.--...|.++...|++++|.+.|.++
T Consensus 516 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 516 AATWANLGHAYRKLKMYDAAIDALNQGLLLS--------TNDANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 6789999999999999999999988753221 001112346789999999999999999875
No 122
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=81.55 E-value=8.4 Score=27.36 Aligned_cols=60 Identities=15% Similarity=0.069 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCc------HHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 22 GQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPD------DIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 22 ~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~------~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
..|..+|......++++-|...|.+.-+ +. .+.++ .-...|.++...|++++|..+|.++
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~-----~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 253 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLL-----IA---KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 253 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHH-----HH---HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHH-----HH---HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4588899999999999999888876422 11 11222 2234567777777777777776653
No 123
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=81.37 E-value=5.8 Score=29.29 Aligned_cols=61 Identities=8% Similarity=-0.016 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 21 AGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
...|..||..-+...+++-|...|.+.-... .+....-...|.++...|++++|...|.++
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 256 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD--------SNNEKGLSRRGEAHLAVNDFELARADFQKV 256 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4789999999999999999998888652211 011112346788888888888888888764
No 124
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=80.89 E-value=7 Score=23.47 Aligned_cols=62 Identities=6% Similarity=-0.001 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCC---cHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 23 QASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALP---DDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 23 lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~---~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
.+..+|.......+++-|...|.+.- .+.......+ ..-...|.++...|++++|...|.++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHL-----AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH-----HHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 46666777777777777776665531 1222211110 11235677888888888888887664
No 125
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=80.68 E-value=6.1 Score=28.23 Aligned_cols=30 Identities=3% Similarity=-0.115 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHc
Q psy11108 18 PYVAGQASFLSGVSQKKERFYHVEQALVNC 47 (106)
Q Consensus 18 ~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl 47 (106)
+....+|..+|..-...++++-|+..|.++
T Consensus 96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 125 (308)
T 2ond_A 96 KKNMLLYFAYADYEESRMKYEKVHSIYNRL 125 (308)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 445678999999888889999999999875
No 126
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=80.50 E-value=6.5 Score=30.01 Aligned_cols=22 Identities=18% Similarity=-0.003 Sum_probs=18.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH
Q psy11108 67 MKHAYIAQHQGRFQTAENYQLQ 88 (106)
Q Consensus 67 ~~~Aei~ay~Gkf~EAe~i~l~ 88 (106)
...|.++...|++++|.++|.+
T Consensus 154 ~~l~~~~~~~g~~~~A~~~~~~ 175 (597)
T 2xpi_A 154 YLAAFCLVKLYDWQGALNLLGE 175 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHCS
T ss_pred HHHHHHHHHHhhHHHHHHHHhc
Confidence 4567888899999999999985
No 127
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=80.48 E-value=4.8 Score=30.55 Aligned_cols=61 Identities=8% Similarity=-0.024 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 21 AGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
...|..||...+...+++-|...|.++-+..- +...--...|.++...|++++|...|.++
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p--------~~~~a~~~lg~~~~~~g~~~eA~~~l~~A 333 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDP--------SNTKALYRRAQGWQGLKEYDQALADLKKA 333 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 56788899988888999888888775533211 11112357899999999999999999875
No 128
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=80.31 E-value=12 Score=29.52 Aligned_cols=61 Identities=8% Similarity=-0.118 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHH-----HHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 24 ASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDI-----MKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 24 W~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~-----~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
...||..-...++++-|+.-|.+. |...+++---+.++ ...|.++..+|+++||+.+|.++
T Consensus 343 ~~nLa~~y~~~g~~~eA~~~~~~a-----L~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 343 MYQAMGVCLYMQDWEGALKYGQKI-----IKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----HHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 556666666777777777766654 22233332222232 25799999999999999999886
No 129
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=80.30 E-value=8.1 Score=26.48 Aligned_cols=65 Identities=8% Similarity=-0.090 Sum_probs=49.3
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCC---CcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 17 CPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRAL---PDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~---~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
.+..+..+-.+|...+..++++-|...|.++-+..- .- +.--...|.++...|+|++|...|.+.
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~ 78 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR--------THEWAADAQFYLARAYYQNKEYLLAASEYERF 78 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS--------CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--------CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 445677889999999999999999999887633210 00 112356899999999999999999874
No 130
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=79.55 E-value=6.5 Score=33.08 Aligned_cols=23 Identities=22% Similarity=0.102 Sum_probs=17.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 67 MKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 67 ~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
...|.++.-+|+++||...|.++
T Consensus 115 ~~Lg~~~~~~g~~~eAi~~~~~A 137 (723)
T 4gyw_A 115 SNLASIHKDSGNIPEAIASYRTA 137 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 35677777888888888877764
No 131
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=79.43 E-value=2.2 Score=33.16 Aligned_cols=62 Identities=10% Similarity=0.027 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcH--HHHHHHHHHHc---------CCHHHHHHH
Q psy11108 17 CPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDD--IMKHAYIAQHQ---------GRFQTAENY 85 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~--~~~~Aei~ay~---------Gkf~EAe~i 85 (106)
++.++..|..||.......+++-|..+|.++-... |+. -...|.++... |++++|...
T Consensus 133 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-----------p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~ 201 (474)
T 4abn_A 133 EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC-----------KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ 201 (474)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-----------CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----------CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHH
Confidence 34446678888888888888888888877653321 221 23567888888 999999999
Q ss_pred HHHc
Q psy11108 86 QLQA 89 (106)
Q Consensus 86 ~l~a 89 (106)
|.++
T Consensus 202 ~~~a 205 (474)
T 4abn_A 202 AKLA 205 (474)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
No 132
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=79.40 E-value=8.8 Score=29.95 Aligned_cols=65 Identities=17% Similarity=0.098 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 17 CPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
++.++..|..||..-....+++-|...|.+.-... .+...--...|.++...|++++|.+.|.++
T Consensus 53 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 117 (568)
T 2vsy_A 53 HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA--------PEHPGIALWLGHALEDAGQAEAAAAAYTRA 117 (568)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34457789999999999999999998887652210 000111234566666667777776666653
No 133
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=79.37 E-value=6.9 Score=28.25 Aligned_cols=80 Identities=18% Similarity=0.052 Sum_probs=54.0
Q ss_pred hhhhhhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCch----hhHHH----HHhhC-----------------CCc
Q psy11108 10 SRHSFVLCPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYA----GLQLI----KSLRA-----------------LPD 64 (106)
Q Consensus 10 ~~~~f~~~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~----~v~~I----~~l~~-----------------~~~ 64 (106)
+|.+....++++..|..+|..-+..++++-|++.|.++-... ...+. .-... -|+
T Consensus 119 ~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~ 198 (291)
T 3mkr_A 119 AALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP 198 (291)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC
Confidence 455566667788899999999999999999999998763211 11111 11111 111
Q ss_pred -HH--HHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 65 -DI--MKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 65 -~~--~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
.. ...|.++.-.|++++|+..|.++
T Consensus 199 ~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 199 TLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 12 24677888999999999999874
No 134
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=79.28 E-value=14 Score=28.59 Aligned_cols=61 Identities=8% Similarity=-0.015 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 21 AGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
...|..||..-++..+++-|...|.++-... .+....-..+|.++...|++++|...|.++
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~a 377 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD--------SANEKGLYRRGEAQLLMNEFESAKGDFEKV 377 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 4778999999999999999998887652211 011122356788899999999999988875
No 135
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=78.75 E-value=9.9 Score=25.77 Aligned_cols=63 Identities=14% Similarity=0.035 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCC---cHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 22 GQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALP---DDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 22 ~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~---~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
..|..+|...+...+++-|...|.+.-+ +.......+ ..-...|.++...|++++|..+|.++
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~-----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLL-----IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH-----HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH-----HHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4588889888999999999888876422 112111100 02245577777777777777777653
No 136
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=78.00 E-value=10 Score=23.63 Aligned_cols=66 Identities=12% Similarity=0.072 Sum_probs=48.3
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCc------HHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 17 CPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPD------DIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~------~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
++.++..|..+|..-+...+++-|...|.+.=++. .. .... --...|.++.-+|++++|.+.|.++
T Consensus 38 ~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~-----~~--~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 38 DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG-----RE--TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----HH--TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC-----cc--cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46668889999999999999999998887652211 00 1111 1245788899999999999999874
No 137
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=76.91 E-value=7.8 Score=31.70 Aligned_cols=65 Identities=6% Similarity=-0.098 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 17 CPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
.+.+...|..+|...+...+++-|...|.++-.. --+-..--...|.++..+|++++|...|.++
T Consensus 429 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 493 (681)
T 2pzi_A 429 FSESVELPLMEVRALLDLGDVAKATRKLDDLAER--------VGWRWRLVWYRAVAELLTGDYDSATKHFTEV 493 (681)
T ss_dssp CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3555778999999999999999999888765211 0011112346799999999999999999875
No 138
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=76.58 E-value=7.9 Score=31.66 Aligned_cols=76 Identities=4% Similarity=-0.059 Sum_probs=53.0
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHc---------------------CCchhhHHHHHhhCCC-c---HHHHHHH
Q psy11108 17 CPYVAGQASFLSGVSQKKERFYHVEQALVNC---------------------QDYAGLQLIKSLRALP-D---DIMKHAY 71 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl---------------------~d~~~v~~I~~l~~~~-~---~~~~~Ae 71 (106)
++.+...|-.+|...+...+++-|..+|.+. |+++.+...++.-++. + --...|.
T Consensus 463 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~~~~~~~al~~~P~~~~a~~~lg~ 542 (681)
T 2pzi_A 463 VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDEHKFYQTVWSTNDGVISAAFGLAR 542 (681)
T ss_dssp HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCTTCHHHHHHHHCTTCHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 3456788999999999999999999888764 2222222333332222 1 1246799
Q ss_pred HHHHcCCHHHHHHHHHHcCCc
Q psy11108 72 IAQHQGRFQTAENYQLQADRR 92 (106)
Q Consensus 72 i~ay~Gkf~EAe~i~l~ag~~ 92 (106)
++...|++++|...|.++-..
T Consensus 543 ~~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 543 ARSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp HHHHTTCHHHHHHHHHTSCTT
T ss_pred HHHHcCCHHHHHHHHHhhccc
Confidence 999999999999999987443
No 139
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=76.53 E-value=14 Score=25.21 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=19.2
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHc
Q psy11108 67 MKHAYIAQH----QGRFQTAENYQLQA 89 (106)
Q Consensus 67 ~~~Aei~ay----~Gkf~EAe~i~l~a 89 (106)
...|.++.. .|++++|...|.++
T Consensus 114 ~~lg~~~~~~~~~~~~~~~A~~~~~~a 140 (273)
T 1ouv_A 114 ASLGGIYHDGKVVTRDFKKAVEYFTKA 140 (273)
T ss_dssp HHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 456788888 99999999999875
No 140
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=76.23 E-value=6.8 Score=28.97 Aligned_cols=62 Identities=10% Similarity=0.056 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHcCCc
Q psy11108 23 QASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQADRR 92 (106)
Q Consensus 23 lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~ag~~ 92 (106)
.|..||..-+...+++-|...|.+.-..+ .+...--...|.++...|++++|...|.++=..
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE--------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 67888888888888888877776542110 011112357899999999999999999987433
No 141
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=75.83 E-value=12 Score=27.03 Aligned_cols=64 Identities=11% Similarity=-0.039 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCC---cHHHHHHHHHHHcCCHHHHHHHHHHcC
Q psy11108 22 GQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALP---DDIMKHAYIAQHQGRFQTAENYQLQAD 90 (106)
Q Consensus 22 ~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~---~~~~~~Aei~ay~Gkf~EAe~i~l~ag 90 (106)
..|..||..-+..++++-|...|.+.- .........+ .--...|.++...|++++|..+|.++-
T Consensus 304 ~~~~~la~~~~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 304 QSCYSLGNTYTLLHEFNTAIEYHNRHL-----AIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 456677777777777777777766532 2222221111 122456888888999999998888753
No 142
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=75.30 E-value=15 Score=28.31 Aligned_cols=60 Identities=10% Similarity=0.067 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCc-HH--HHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 18 PYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPD-DI--MKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 18 ~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~-~~--~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
+.+...|..++.. ++..+++-|+..|.+.-.. .|. .. ...++...-.|++++|.++|.++
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-----------~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ra 72 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQ-----------FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRC 72 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4457788888874 6778888888888765221 111 11 23456666678888888888775
No 143
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=74.37 E-value=12 Score=26.43 Aligned_cols=63 Identities=10% Similarity=-0.065 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCc---HHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 22 GQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPD---DIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 22 ~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~---~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
..|..||.......+++-|...|.+.- .+...+...+. --...|.++...|++++|...|.++
T Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 113 (406)
T 3sf4_A 48 AIYSQLGNAYFYLHDYAKALEYHHHDL-----TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH 113 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH-----HHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 468888888888889988888877642 22222211111 1245788999999999999988764
No 144
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=74.21 E-value=15 Score=24.90 Aligned_cols=62 Identities=6% Similarity=-0.001 Sum_probs=34.5
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCC---cHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 23 QASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALP---DDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 23 lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~---~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
.+..+|..-...++++-|...|.+.- .........+ .--...|.++...|++++|..+|.++
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~-----~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHL-----AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH-----HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 45556666666666666666555431 1111111100 01235678888888888888888764
No 145
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=74.12 E-value=14 Score=26.32 Aligned_cols=28 Identities=4% Similarity=-0.077 Sum_probs=24.3
Q ss_pred HH-HHHHHHHHHHhcccHHHHHHHHHHcC
Q psy11108 21 AG-QASFLSGVSQKKERFYHVEQALVNCQ 48 (106)
Q Consensus 21 ~~-lW~~LA~~AL~~~~l~iAe~Af~rl~ 48 (106)
+. .|..++......++++-|+..|.+.-
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 161 (308)
T 2ond_A 133 PTLVYIQYMKFARRAEGIKSGRMIFKKAR 161 (308)
T ss_dssp THHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 44 89999999999999999999998753
No 146
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=73.77 E-value=14 Score=23.31 Aligned_cols=64 Identities=8% Similarity=-0.041 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhC---CC------------cHHHHHHHHHHHcCCHHHHHHH
Q psy11108 21 AGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRA---LP------------DDIMKHAYIAQHQGRFQTAENY 85 (106)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~---~~------------~~~~~~Aei~ay~Gkf~EAe~i 85 (106)
...|..+|......++++-|...|.+.- .++..... -+ .--...|.++...|+|++|...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~ 85 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDAL-----TRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET 85 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4568999999999999999999998753 22222211 11 1123578999999999999998
Q ss_pred HHHc
Q psy11108 86 QLQA 89 (106)
Q Consensus 86 ~l~a 89 (106)
|.++
T Consensus 86 ~~~a 89 (162)
T 3rkv_A 86 SSEV 89 (162)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 147
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=73.43 E-value=21 Score=26.19 Aligned_cols=69 Identities=12% Similarity=0.004 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhH----H--HHHhhCC-CcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 21 AGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQ----L--IKSLRAL-PDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~----~--I~~l~~~-~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
...|..+|.......+++-|...|.+.-+..--. . -..+... ..--...|.++..+|+|++|...|.++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5569999999999999999999998652211000 0 0000000 012346789999999999999998775
No 148
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=73.08 E-value=18 Score=26.31 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcH------HHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 21 AGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDD------IMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~------~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
...+..||..-...++++-|...|.+.- .+.+ +.+++ -...|.++..+|++++|...|.++
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al-----~~~~---~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a 248 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAAL-----ELAM---DIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHH---HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH-----HHHH---HcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3457789999999999999999887652 2222 22222 134688888999999999888775
No 149
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=72.66 E-value=19 Score=24.13 Aligned_cols=69 Identities=3% Similarity=-0.054 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHcC--CchhhHHH--HHhhCCCcH----HHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 21 AGQASFLSGVSQKKERFYHVEQALVNCQ--DYAGLQLI--KSLRALPDD----IMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~Af~rl~--d~~~v~~I--~~l~~~~~~----~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
...+-..|...+..++++-|...|.++- +....... ..+.+.... ....|.++.-.|++++|...|.++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3445667888899999999999998752 22222211 111111100 112799999999999999999774
No 150
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=71.82 E-value=23 Score=27.71 Aligned_cols=61 Identities=13% Similarity=0.003 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHH-----HHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 24 ASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDI-----MKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 24 W~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~-----~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
...||......++++-|+.-|.+. |...+++---..+. ...|.++..+|+++||+.+|.++
T Consensus 332 ~~~L~~~y~~~g~~~eA~~~~~~~-----L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 332 LDCAMDACINLGLLEEALFYGTRT-----MEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH-----HHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHH-----HHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 667777777778888888777654 22222222222222 35799999999999999999886
No 151
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=71.41 E-value=13 Score=28.07 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHh---------hCCC----cHHHHHHHHHHHcCCHHHHHHHHH
Q psy11108 21 AGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSL---------RALP----DDIMKHAYIAQHQGRFQTAENYQL 87 (106)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l---------~~~~----~~~~~~Aei~ay~Gkf~EAe~i~l 87 (106)
...|..+|...+...+++-|...|.+.-.+ +... .++. .--...|.++..+|++++|...|.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 297 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY-----VEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCL 297 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----hhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 345999999999999999999999865332 1111 0111 112457899999999999999998
Q ss_pred Hc
Q psy11108 88 QA 89 (106)
Q Consensus 88 ~a 89 (106)
++
T Consensus 298 ~a 299 (370)
T 1ihg_A 298 EA 299 (370)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 152
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=69.85 E-value=19 Score=26.56 Aligned_cols=73 Identities=18% Similarity=0.168 Sum_probs=49.4
Q ss_pred hhhhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCC---CcHH---HHHHHHHHHcCCHHHHHHH
Q psy11108 12 HSFVLCPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRAL---PDDI---MKHAYIAQHQGRFQTAENY 85 (106)
Q Consensus 12 ~~f~~~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~---~~~~---~~~Aei~ay~Gkf~EAe~i 85 (106)
.+|.......++...||..-...++.+-|...|.+. +++++..... ++.. .-.|.++..+|++++|...
T Consensus 42 ~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kA-----l~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~ 116 (472)
T 4g1t_A 42 TEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKA-----EELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIY 116 (472)
T ss_dssp TTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHH-----HHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 344444445677889999999999999999999875 3334433221 1111 2468899999999999998
Q ss_pred HHHc
Q psy11108 86 QLQA 89 (106)
Q Consensus 86 ~l~a 89 (106)
|.++
T Consensus 117 ~~ka 120 (472)
T 4g1t_A 117 VDKV 120 (472)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 153
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=69.16 E-value=18 Score=28.98 Aligned_cols=61 Identities=13% Similarity=0.080 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHH-----HHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 24 ASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDI-----MKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 24 W~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~-----~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
...||..-...++++-|+.-|.+. |....++---+.++ ...|.++..+|+++||+.+|.++
T Consensus 354 ~~nLa~~y~~~g~~~eA~~~~~~a-----L~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 354 LSIASEVLSYLQAYEEASHYARRM-----VDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----HHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH-----HHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 566777777777777777766654 22222221122222 35789999999999999999886
No 154
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=69.07 E-value=29 Score=25.10 Aligned_cols=62 Identities=10% Similarity=0.146 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCc---HHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 23 QASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPD---DIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 23 lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~---~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
.+..||..-...++++-|...|.+.-+ +.+.....+. .-...|.++...|++++|...|.++
T Consensus 226 ~~~~lg~~y~~~g~~~~A~~~~~~al~-----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 290 (383)
T 3ulq_A 226 TLYNIGLCKNSQSQYEDAIPYFKRAIA-----VFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKG 290 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-----HHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH-----HHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 477788888888888888888876422 2222222111 1346799999999999999999875
No 155
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=66.63 E-value=22 Score=27.19 Aligned_cols=69 Identities=12% Similarity=0.036 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHcCCch----------hhHHHHH---h-h----------------C-CCc---
Q psy11108 19 YVAGQASFLSGVSQKKERFYHVEQALVNCQDYA----------GLQLIKS---L-R----------------A-LPD--- 64 (106)
Q Consensus 19 ~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~----------~v~~I~~---l-~----------------~-~~~--- 64 (106)
.+......++...|...+++.|++-+.++.+.+ -+++.+. + . + -++
T Consensus 134 ~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~ 213 (310)
T 3mv2_B 134 GTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKT 213 (310)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCccc
Confidence 456678899999999999999999996543222 2333322 1 1 1 122
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q psy11108 65 DIMKHAYIAQHQGRFQTAENYQLQ 88 (106)
Q Consensus 65 ~~~~~Aei~ay~Gkf~EAe~i~l~ 88 (106)
..++.+ ...-+|+++||++++.+
T Consensus 214 ~~lLln-~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 214 QLGLLN-LHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHHHH-HHHHHTCHHHHHHHHHH
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHH
Confidence 334455 78889999999999853
No 156
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=65.97 E-value=17 Score=28.77 Aligned_cols=62 Identities=13% Similarity=-0.055 Sum_probs=46.9
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcH--HHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 17 CPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDD--IMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~--~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
++..+..+..+|...+...+++-|...+.+.=... ++- -...|.++.+.|++++|...|.++
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-----------~s~~a~~llG~~~~~~G~~~eA~e~~~~A 336 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-----------MSWLNYVLLGKVYEMKGMNREAADAYLTA 336 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 35557778888888888899999888877532221 232 247799999999999999999875
No 157
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=65.38 E-value=29 Score=23.56 Aligned_cols=69 Identities=10% Similarity=-0.048 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHh--------cccHHHHHHHHHHcCC--c---hhhHHHHHhhCC----CcHHHHHHHHHHHcCCHHHHH
Q psy11108 21 AGQASFLSGVSQK--------KERFYHVEQALVNCQD--Y---AGLQLIKSLRAL----PDDIMKHAYIAQHQGRFQTAE 83 (106)
Q Consensus 21 ~~lW~~LA~~AL~--------~~~l~iAe~Af~rl~d--~---~~v~~I~~l~~~----~~~~~~~Aei~ay~Gkf~EAe 83 (106)
+..|-.+|..-+. ..+++-|...|.++-+ . .......++..+ .......|.++.-.|++++|.
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 4457788888888 8999999999986521 1 111111111111 112367799999999999999
Q ss_pred HHHHHc
Q psy11108 84 NYQLQA 89 (106)
Q Consensus 84 ~i~l~a 89 (106)
..|.+.
T Consensus 169 ~~~~~~ 174 (261)
T 3qky_A 169 VTYEAV 174 (261)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999774
No 158
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=65.23 E-value=26 Score=27.30 Aligned_cols=22 Identities=14% Similarity=0.039 Sum_probs=19.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHc
Q psy11108 68 KHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 68 ~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
..|.++..+|+|+||+.+|.++
T Consensus 334 ~L~~~y~~~g~~~eA~~~~~~~ 355 (429)
T 3qwp_A 334 CAMDACINLGLLEEALFYGTRT 355 (429)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHH
Confidence 3578888999999999999875
No 159
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=64.98 E-value=36 Score=24.54 Aligned_cols=60 Identities=8% Similarity=-0.140 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCc-------HHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 22 GQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPD-------DIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 22 ~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~-------~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
..|..||..-....+++-|...|.+.-+ -.++.++ .-...|.++...|+|++|...|.++
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~--------~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 210 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYE--------IYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKA 210 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--------HHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4577888888888888877777665321 1122221 1234567777777777777776654
No 160
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=63.43 E-value=38 Score=24.16 Aligned_cols=58 Identities=22% Similarity=0.123 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcH------HHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 24 ASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDD------IMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 24 W~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~------~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
+..+|......++++-|+..|.+.-.. .....+. ....|.++..+|++++|...|.++
T Consensus 56 ~~~l~~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a 119 (373)
T 1hz4_A 56 TSVLGEVLHCKGELTRSLALMQQTEQM--------ARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKA 119 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHH--------HHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 456677777778888888777653221 1112222 235789999999999999988764
No 161
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=62.49 E-value=42 Score=25.76 Aligned_cols=69 Identities=10% Similarity=0.011 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhH------HHHHhhCC-CcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 21 AGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQ------LIKSLRAL-PDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~------~I~~l~~~-~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
...|..+|.......+++-|...|.+.-++.--. .-..+... ..--...|.++..+|+|++|...|.++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4469999999999999999999998652211000 00000000 012245789999999999999988774
No 162
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=61.13 E-value=41 Score=24.31 Aligned_cols=62 Identities=5% Similarity=-0.039 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCC--cHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 23 QASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALP--DDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 23 lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~--~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
.+..||..-....+++-|...|.+.-++ .+...... ..-...|.++..+|++++|...|.++
T Consensus 224 ~~~~lg~~y~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 287 (378)
T 3q15_A 224 SLLNIANSYDRSGDDQMAVEHFQKAAKV-----SREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEG 287 (378)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-----HHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH-----HHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4677888888889999998888765321 22221111 12245799999999999999999875
No 163
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=59.45 E-value=42 Score=23.42 Aligned_cols=63 Identities=8% Similarity=-0.007 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCC----cHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 22 GQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALP----DDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 22 ~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~----~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
..|..+|..-....+++-|...|.+.-+. .+.....+ .--...|.++..+|+|++|...|.++
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~-----~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka 222 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQ-----LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----HHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 36788888888888888888888764321 11111100 01135688999999999999998764
No 164
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=58.79 E-value=43 Score=23.36 Aligned_cols=62 Identities=8% Similarity=0.032 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCc----HHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 23 QASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPD----DIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 23 lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~----~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
.+..||..-....+++-|...|.+.- ...+.+...+. --.-.|.++..+|+|++|..+|.++
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al-----~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQIL-----KQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 47788888888888888888887652 22333211111 1135688999999999999988764
No 165
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=57.75 E-value=33 Score=24.18 Aligned_cols=62 Identities=8% Similarity=0.052 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhc-ccHHHHHHHHHHcCCchhhHHHHHhhCCCc------HHHHHHHHHHHcCCHHHHHHHHHHcCC
Q psy11108 22 GQASFLSGVSQKK-ERFYHVEQALVNCQDYAGLQLIKSLRALPD------DIMKHAYIAQHQGRFQTAENYQLQADR 91 (106)
Q Consensus 22 ~lW~~LA~~AL~~-~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~------~~~~~Aei~ay~Gkf~EAe~i~l~ag~ 91 (106)
..|..||..-... .+++-|...|.+.-++. . ...+ .-...|.++.-+|++++|..+|.++..
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~-----~---~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWY-----A---QDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-----H---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH-----H---hCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3466777766665 78888887777552221 1 1111 123569999999999999999988543
No 166
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=56.95 E-value=16 Score=28.52 Aligned_cols=68 Identities=10% Similarity=-0.121 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHH--HHHcCCHHHHHHHHHHcCCc
Q psy11108 17 CPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYI--AQHQGRFQTAENYQLQADRR 92 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei--~ay~Gkf~EAe~i~l~ag~~ 92 (106)
.+.++..|..||..-....+++-|...|.++-.. --+........+.+ +.-+|+|++|..+|.+....
T Consensus 70 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~ 139 (477)
T 1wao_1 70 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV--------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 139 (477)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------STTCTTHHHHHHHHHHHHHHHHHCCC------CCST
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 3456788999999999999999999998865221 01111122233444 67779999999999865443
No 167
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=56.39 E-value=42 Score=22.47 Aligned_cols=61 Identities=7% Similarity=-0.023 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCC---cHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11108 20 VAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALP---DDIMKHAYIAQHQGRFQTAENYQLQ 88 (106)
Q Consensus 20 ~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~---~~~~~~Aei~ay~Gkf~EAe~i~l~ 88 (106)
++.-|-.+|...+..++++-|...|.++-+ .--.-+ +--...|.++.-.|++++|...|.+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~--------~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~ 66 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDN--------RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDR 66 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------HCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 355677889999999999999999887532 110111 1235679999999999999999977
No 168
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=55.35 E-value=54 Score=24.01 Aligned_cols=31 Identities=13% Similarity=0.061 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHc
Q psy11108 17 CPYVAGQASFLSGVSQKKERFYHVEQALVNC 47 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl 47 (106)
.+..+..|..||..-....+++-|...|.+.
T Consensus 243 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 273 (472)
T 4g1t_A 243 APGVTDVLRSAAKFYRRKDEPDKAIELLKKA 273 (472)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 4556777889999888899988888888764
No 169
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=54.78 E-value=32 Score=24.46 Aligned_cols=21 Identities=14% Similarity=0.159 Sum_probs=13.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHc
Q psy11108 69 HAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 69 ~Aei~ay~Gkf~EAe~i~l~a 89 (106)
.|.++.-+|+|++|...|.++
T Consensus 161 lg~~~~~~g~~~~A~~~~~~a 181 (307)
T 2ifu_A 161 ASRLLVRQQKFDEAAASLQKE 181 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 466666666666666666554
No 170
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=54.37 E-value=32 Score=27.50 Aligned_cols=22 Identities=9% Similarity=0.137 Sum_probs=19.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHc
Q psy11108 68 KHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 68 ~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
..|.++..+|+|+||+.+|.++
T Consensus 356 nLa~~y~~~g~~~eA~~~~~~a 377 (490)
T 3n71_A 356 IASEVLSYLQAYEEASHYARRM 377 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHH
Confidence 3588999999999999999874
No 171
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=54.19 E-value=13 Score=22.37 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=20.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 67 MKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 67 ~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
...|.++..+|+|++|...|.++
T Consensus 31 ~~lg~~~~~~~~~~~A~~~~~~a 53 (117)
T 3k9i_A 31 LGLGSTFRTLGEYRKAEAVLANG 53 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 46789999999999999999875
No 172
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=51.53 E-value=31 Score=26.23 Aligned_cols=31 Identities=3% Similarity=-0.141 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHHHHHhccc-HHHHHHHHHHc
Q psy11108 17 CPYVAGQASFLSGVSQKKER-FYHVEQALVNC 47 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~-l~iAe~Af~rl 47 (106)
++.+...|..+|..-....+ ++-|..+|.++
T Consensus 127 ~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~a 158 (382)
T 2h6f_A 127 NAANYTVWHFRRVLLKSLQKDLHEEMNYITAI 158 (382)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcccCHHHHHHHHHHH
Confidence 44557778888887777775 88777777654
No 173
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=51.46 E-value=38 Score=20.50 Aligned_cols=61 Identities=16% Similarity=-0.069 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHHhccc---HHHHHHHHHHcCCchhhHHHHHhhCCCc----HHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 17 CPYVAGQASFLSGVSQKKER---FYHVEQALVNCQDYAGLQLIKSLRALPD----DIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~---l~iAe~Af~rl~d~~~v~~I~~l~~~~~----~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
.++++.+|..+|..-.-..+ .+-|+..| ++.-.++. .-...|.++.-+|+|++|-.+|.+.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l------------~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~ 69 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLL------------EQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLL 69 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHH------------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH------------HHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45678888888866543333 34444333 33333322 2357799999999999999999874
No 174
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=49.92 E-value=15 Score=24.13 Aligned_cols=31 Identities=16% Similarity=0.098 Sum_probs=22.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHc-CCcccccc
Q psy11108 67 MKHAYIAQHQGRFQTAENYQLQA-DRRTWKSK 97 (106)
Q Consensus 67 ~~~Aei~ay~Gkf~EAe~i~l~a-g~~~~Aie 97 (106)
-++|+-++..|+|+||-....++ .....|++
T Consensus 19 ~RrAe~ll~~gkydeAIech~kAa~yL~eAmk 50 (97)
T 2crb_A 19 SRRADRLLAAGKYEEAISCHRKATTYLSEAMK 50 (97)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999996665553 23344444
No 175
>2xl1_A Arginine attenuator peptide; translation, antibiotic, ribosome, cytomegalovirus; NMR {Neurospora crassa}
Probab=49.75 E-value=4.5 Score=20.17 Aligned_cols=23 Identities=26% Similarity=0.298 Sum_probs=15.3
Q ss_pred CCchhHHHhhhhhhhcCCCCHHHHHHHH
Q psy11108 1 MNGQYAVIASRHSFVLCPYVAGQASFLS 28 (106)
Q Consensus 1 ~~~~~~~~~~~~~f~~~~~~~~lW~~LA 28 (106)
|||.-.|..+ .+|.++ .||+.|-
T Consensus 1 mngrpsvfts-qdylsd----hlwraln 23 (26)
T 2xl1_A 1 MNGRPSVFTS-QDYLSD----HLWRALN 23 (26)
T ss_pred CCCCCceeec-HHHHHH----HHHHHHh
Confidence 6777766544 355555 8999774
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.58 E-value=18 Score=26.31 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=24.6
Q ss_pred CCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 62 LPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 62 ~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
.|...+..|+-++-.|+|++|.++|.+.
T Consensus 3 ~p~~~l~~a~~l~~~~~y~eA~~~~~~~ 30 (434)
T 4b4t_Q 3 LPGSKLEEARRLVNEKQYNEAEQVYLSL 30 (434)
T ss_dssp STTHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4667788999999999999999999874
No 177
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=47.11 E-value=71 Score=22.38 Aligned_cols=61 Identities=3% Similarity=-0.110 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCc-------HHHHHHHHHHHcCCHHHHHHHHHHcC
Q psy11108 22 GQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPD-------DIMKHAYIAQHQGRFQTAENYQLQAD 90 (106)
Q Consensus 22 ~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~-------~~~~~Aei~ay~Gkf~EAe~i~l~ag 90 (106)
..|..||..-+...+++-|...|.+..+.. .+.+. --...|.++...|++++|...|.++-
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSS--------MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------SSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--------hcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 347778888888888888887777543221 01111 12456888999999999999998863
No 178
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=44.98 E-value=14 Score=29.09 Aligned_cols=22 Identities=9% Similarity=0.063 Sum_probs=19.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHc
Q psy11108 68 KHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 68 ~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
-.|.++..+|+|+||+.+|.++
T Consensus 345 nLa~~y~~~g~~~eA~~~~~~a 366 (433)
T 3qww_A 345 QAMGVCLYMQDWEGALKYGQKI 366 (433)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHH
Confidence 3588999999999999999885
No 179
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=44.20 E-value=57 Score=24.40 Aligned_cols=61 Identities=13% Similarity=-0.033 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHcCCchh-hHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 23 QASFLSGVSQKKERFYHVEQALVNCQDYAG-LQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 23 lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~-v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
.+-.||...-.-++++-|...|.+...-.. -.. .++....+|.++.-+|+++||..+|.+.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~------~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEAC------ARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTT------HHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccc------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 355666666666666666666664421000 000 0113467899999999999999999763
No 180
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=44.03 E-value=70 Score=23.91 Aligned_cols=61 Identities=18% Similarity=0.141 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 23 QASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 23 lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
..=.+|..+++..+++-|+..|....... -.+.. .+-....|.++.-.|+|+||...|.+.
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~-----~~a~~~LG~al~~LG~~~eAl~~l~~a 197 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLA-----GAAGVAHGVAAANLALFTEAERRLTEA 197 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHH-----HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccH-----HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 44555666666666666666664332111 00000 012467799999999999999999986
No 181
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=43.24 E-value=29 Score=21.35 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 65 DIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 65 ~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
.++..||-++-+|.+++|...|-++
T Consensus 19 ~eV~~GE~L~~~g~~~~~~~hf~nA 43 (73)
T 3ax2_A 19 EEIQLGEELLAQGDYEKGVDHLTNA 43 (73)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5688999999999999999988764
No 182
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=42.60 E-value=99 Score=23.54 Aligned_cols=30 Identities=3% Similarity=-0.177 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHHHh-------cccHH-------HHHHHHHHc
Q psy11108 18 PYVAGQASFLSGVSQK-------KERFY-------HVEQALVNC 47 (106)
Q Consensus 18 ~~~~~lW~~LA~~AL~-------~~~l~-------iAe~Af~rl 47 (106)
+.++.+|-.+|..-.. .++++ -|...|.+.
T Consensus 269 p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~A 312 (530)
T 2ooe_A 269 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERA 312 (530)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHH
Confidence 4568889999987664 46665 566666654
No 183
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=41.79 E-value=24 Score=26.90 Aligned_cols=64 Identities=6% Similarity=-0.100 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11108 17 CPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQ 88 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~ 88 (106)
++.+...|..+|..-....+++-|..+|.++=+.+- +-..--..+|.++..+|++++|...|.+
T Consensus 162 ~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP--------~~~~a~~~lg~~~~~~g~~~eAl~~~~~ 225 (382)
T 2h6f_A 162 QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA--------KNYHAWQHRQWVIQEFKLWDNELQYVDQ 225 (382)
T ss_dssp CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc--------cCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 455678899999888888888877777765411100 0000113456666666676666666655
No 184
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=40.53 E-value=86 Score=21.46 Aligned_cols=67 Identities=10% Similarity=-0.138 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCc------HHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 21 AGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPD------DIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~------~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
...|..+|......++++-|..+|.+.=.+.--. -. -+.+.. --.-+|.++.-.|+|+||...|-++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~-~~-~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kA 83 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTM-PP-EEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA 83 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-CT-TSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC-cc-hhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4568899999999999999999998652221110 00 000110 2345789999999999999988664
No 185
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=39.71 E-value=60 Score=21.68 Aligned_cols=29 Identities=7% Similarity=-0.057 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHc
Q psy11108 19 YVAGQASFLSGVSQKKERFYHVEQALVNC 47 (106)
Q Consensus 19 ~~~~lW~~LA~~AL~~~~l~iAe~Af~rl 47 (106)
.++.-+-.||..-....|++-|...|.+.
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a 44 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKA 44 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 45677888888888888888888888765
No 186
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=39.17 E-value=1.2e+02 Score=22.88 Aligned_cols=62 Identities=8% Similarity=-0.050 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHc-CCchhhHHHHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHH
Q psy11108 20 VAGQASFLSGVSQKKERFYHVEQALVNC-QDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQ 88 (106)
Q Consensus 20 ~~~lW~~LA~~AL~~~~l~iAe~Af~rl-~d~~~v~~I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~ 88 (106)
.+.-.-.||......++++-|.+.+.+. +.-.... -...-.+.+.|++..||+++|.+++.+
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~-------~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEG-------TTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTT-------HHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcC-------cHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3434456777777777777777666654 1110000 001235779999999999999999965
No 187
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=38.78 E-value=51 Score=19.91 Aligned_cols=33 Identities=21% Similarity=0.165 Sum_probs=28.6
Q ss_pred cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHcC
Q psy11108 16 LCPYVAGQASFLSGVSQKKERFYHVEQALVNCQ 48 (106)
Q Consensus 16 ~~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~ 48 (106)
.++.++.-+-.||..+.+.++++-|...|.++-
T Consensus 38 ~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 38 LEPYNEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356667889999999999999999999998864
No 188
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=38.75 E-value=24 Score=24.73 Aligned_cols=63 Identities=5% Similarity=-0.109 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCc---HHHHHHHHHHHcCCHHHH-HHHHHHc
Q psy11108 22 GQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPD---DIMKHAYIAQHQGRFQTA-ENYQLQA 89 (106)
Q Consensus 22 ~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~---~~~~~Aei~ay~Gkf~EA-e~i~l~a 89 (106)
..+..+|..-....+++-|...|.+.-+. ......... --...|.++..+|++++| ...|.++
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~-----~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEI-----SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHH-----HHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 46788888888999999988888765332 222222211 224679999999999999 7767654
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=37.66 E-value=38 Score=24.84 Aligned_cols=67 Identities=13% Similarity=0.034 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHH-----------HHHhhCCCcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 21 AGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQL-----------IKSLRALPDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~-----------I~~l~~~~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
...|..+|.......+++-|...|.+.-.+.--.. +..++ ..--...|.++...|+|++|...|.++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~--~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVK--NPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHH--THHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45589999999999999999999987422211000 01110 112356789999999999999998775
No 190
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=37.32 E-value=90 Score=20.74 Aligned_cols=56 Identities=13% Similarity=-0.002 Sum_probs=33.1
Q ss_pred cccHHHHHHHHHHcCC-c-hhh---HHHHHhhCC----CcHHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 34 KERFYHVEQALVNCQD-Y-AGL---QLIKSLRAL----PDDIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 34 ~~~l~iAe~Af~rl~d-~-~~v---~~I~~l~~~----~~~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
..+++-|...|.++-+ + ... ....++..+ .......|.++...|++++|...|.+.
T Consensus 109 ~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 173 (225)
T 2yhc_A 109 PQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGM 173 (225)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 4577888888876521 1 111 111122111 123356788999999999998888763
No 191
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=36.50 E-value=0.72 Score=39.12 Aligned_cols=46 Identities=11% Similarity=0.016 Sum_probs=42.4
Q ss_pred HhhhhhhhcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHcCCchhh
Q psy11108 8 IASRHSFVLCPYVAGQASFLSGVSQKKERFYHVEQALVNCQDYAGL 53 (106)
Q Consensus 8 ~~~~~~f~~~~~~~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v 53 (106)
|-.|.+|++....|..|..||.+=|..+...-|-.+|++.+|.+-.
T Consensus 41 ldRa~eyA~~~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y 86 (624)
T 3lvg_A 41 LDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSY 86 (624)
T ss_dssp STTTTTSSSSCCCCCCSSSHHHHTTTSSSCTTTTTSSCCCSCCCSS
T ss_pred cHHHHHHHHHhCCccHHHHHHHHHHccCchHHHHHHHHhCCChHHH
Confidence 5678999999999999999999999999999999999999998754
No 192
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=35.59 E-value=1.2e+02 Score=21.50 Aligned_cols=61 Identities=15% Similarity=-0.017 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCC--Cc---HHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 24 ASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRAL--PD---DIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 24 W~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~--~~---~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
...||...+..++++-|...|.+.- ......... +. .....|.++...|++++|+..|.++
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al-----~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAF-----QLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG 161 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-----HHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH-----HHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4567888888889998888887542 222222111 11 1134688888899999998888764
No 193
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.63 E-value=1.6e+02 Score=21.15 Aligned_cols=61 Identities=8% Similarity=0.127 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcH------HHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 21 AGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDD------IMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~------~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
..++..||..=...++++-|...+..+ +.......++ -...+.++...|+|++|..+|.++
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 201 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDL--------LREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAA 201 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH--------HHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHH--------HHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 345667777777777777777665542 2223333221 246688889999999999998775
No 194
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.50 E-value=1.3e+02 Score=23.10 Aligned_cols=22 Identities=9% Similarity=0.048 Sum_probs=18.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHc
Q psy11108 68 KHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 68 ~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
..|.+.+..++|.+|.+.|+.+
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 4577788899999999999875
No 195
>4ard_A Capsid protein P27; viral protein, retrovirus, GAG; 7.00A {Mason-pfizer monkey virus}
Probab=28.39 E-value=25 Score=23.60 Aligned_cols=19 Identities=5% Similarity=-0.129 Sum_probs=16.5
Q ss_pred CCHHHHHHHHHHHHhcccH
Q psy11108 19 YVAGQASFLSGVSQKKERF 37 (106)
Q Consensus 19 ~~~~lW~~LA~~AL~~~~l 37 (106)
-.|.+|..||..+|+..+.
T Consensus 35 LtP~DWkslar~~L~pgq~ 53 (116)
T 4ard_A 35 LTPTDWNTLVRAVLSGGDH 53 (116)
T ss_pred cChHhHHHHHHHHcCchhH
Confidence 4589999999999998775
No 196
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=27.49 E-value=1.6e+02 Score=20.62 Aligned_cols=60 Identities=8% Similarity=0.186 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCc------HHHHHHHHHHHcCCHHHHHHHHHHcC
Q psy11108 23 QASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPD------DIMKHAYIAQHQGRFQTAENYQLQAD 90 (106)
Q Consensus 23 lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~------~~~~~Aei~ay~Gkf~EAe~i~l~ag 90 (106)
.+..||..-....+++-|...|.+.-.. ..+.+. .-+..+.+...+|++++|...|.++-
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSM--------YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--------HHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3555666666666666666665543221 011111 12334566666799999999998863
No 197
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.42 E-value=1.7e+02 Score=24.16 Aligned_cols=61 Identities=11% Similarity=0.049 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCcHH-----HHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 21 AGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPDDI-----MKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~-----~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
.++|.+|-..-|+....+-|++--.+..-+.. ..++.. -..|.|.+++++|.+|.+.|.++
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~--------~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHT--------DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTT--------TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcc--------cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 56677777777777766666654444321100 011222 23599999999999999999985
No 198
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=27.41 E-value=24 Score=26.97 Aligned_cols=22 Identities=14% Similarity=0.048 Sum_probs=19.2
Q ss_pred HHHHHHHhcccHHHHHHHHHHc
Q psy11108 26 FLSGVSQKKERFYHVEQALVNC 47 (106)
Q Consensus 26 ~LA~~AL~~~~l~iAe~Af~rl 47 (106)
.||..+++..+++.|...|.+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~a 29 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQL 29 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHH
Confidence 3789999999999999999875
No 199
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=26.85 E-value=2e+02 Score=21.52 Aligned_cols=60 Identities=10% Similarity=-0.037 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHh----cccHHHHHHHHHHcCCchhhHHHHHhhCCCcHHHHHHHHHHH----cCCHHHHHHHHHHc
Q psy11108 20 VAGQASFLSGVSQK----KERFYHVEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQH----QGRFQTAENYQLQA 89 (106)
Q Consensus 20 ~~~lW~~LA~~AL~----~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~~~~~~Aei~ay----~Gkf~EAe~i~l~a 89 (106)
++.-|-.||..-.. ..|++-|...|.+.-+. ..+......|.++.. .|++++|...|.++
T Consensus 362 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~----------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 429 (490)
T 2xm6_A 362 EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ----------GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA 429 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 34455555555555 45555555555543211 011122356777776 78999999998875
No 200
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=26.75 E-value=47 Score=20.57 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 65 DIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 65 ~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
.++..|.=++..|+|+.|-.+|-..
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~ 38 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGV 38 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHH
Confidence 5688999999999999999998653
No 201
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=25.01 E-value=73 Score=27.36 Aligned_cols=30 Identities=7% Similarity=-0.097 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHcCCc
Q psy11108 21 AGQASFLSGVSQKKERFYHVEQALVNCQDY 50 (106)
Q Consensus 21 ~~lW~~LA~~AL~~~~l~iAe~Af~rl~d~ 50 (106)
..-|..||..|..-.+++=|..||.+|=+.
T Consensus 613 ~lEWEiLGlla~RL~h~~EA~~a~~~~l~~ 642 (754)
T 4gns_B 613 GLEWELLGLIMLRTWHWEDAVACLRTSIVA 642 (754)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 556999999999999999999999998543
No 202
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=24.07 E-value=79 Score=20.31 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc
Q psy11108 65 DIMKHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 65 ~~~~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
.++..||.++-+|.+++|...|.++
T Consensus 22 ~eV~lGE~L~~~g~~e~av~Hf~nA 46 (95)
T 1om2_A 22 EEIQLGEELLAQGDYEKGVDHLTNA 46 (95)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4688999999999999999977664
No 203
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=23.27 E-value=60 Score=22.90 Aligned_cols=22 Identities=27% Similarity=0.215 Sum_probs=19.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHc
Q psy11108 68 KHAYIAQHQGRFQTAENYQLQA 89 (106)
Q Consensus 68 ~~Aei~ay~Gkf~EAe~i~l~a 89 (106)
..|.+.+++++|.+|++.|.++
T Consensus 19 YlGr~~~~~~~y~~A~~~L~~A 40 (203)
T 3t5x_A 19 YVGRKAMFDSDFKQAEEYLSFA 40 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHH
Confidence 4699999999999999988775
No 204
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=22.62 E-value=1.6e+02 Score=20.07 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=11.6
Q ss_pred CCHHHHHHHHHHc
Q psy11108 77 GRFQTAENYQLQA 89 (106)
Q Consensus 77 Gkf~EAe~i~l~a 89 (106)
|+|++|.+.|.++
T Consensus 105 g~~~eA~~~~~kA 117 (158)
T 1zu2_A 105 HNFDLATQFFQQA 117 (158)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHH
Confidence 5899999999886
No 205
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=21.73 E-value=2e+02 Score=19.75 Aligned_cols=63 Identities=5% Similarity=-0.078 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHcCCchhhHHHHHhhCCCc---HHHHHHHHHHHcC-CHHHHHHHHHHc
Q psy11108 22 GQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIKSLRALPD---DIMKHAYIAQHQG-RFQTAENYQLQA 89 (106)
Q Consensus 22 ~lW~~LA~~AL~~~~l~iAe~Af~rl~d~~~v~~I~~l~~~~~---~~~~~Aei~ay~G-kf~EAe~i~l~a 89 (106)
..+-.||..-.+..+++-|...|.+. +.+......... --...|.++..+| .+++|...|.++
T Consensus 197 ~~~~nlg~~y~~~~~y~~A~~~~~~a-----l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 197 KVRYNHAKALYLDSRYEESLYQVNKA-----IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----HHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH-----HHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 35778888888888888888777653 333333333322 2356899999999 478888877665
No 206
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=20.60 E-value=83 Score=20.41 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=19.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHcCC
Q psy11108 67 MKHAYIAQHQGRFQTAENYQLQADR 91 (106)
Q Consensus 67 ~~~Aei~ay~Gkf~EAe~i~l~ag~ 91 (106)
...|--++-.|+|++|++.+.+++.
T Consensus 24 ~~eAl~~Ak~g~fe~A~~~l~eA~~ 48 (105)
T 2e2a_A 24 LLEALKAAENGDFAKADSLVVEAGS 48 (105)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566777889999999999887653
No 207
>2kgf_A Capsid protein P27; retrovirus capsid protein, N-terminal core domain (SCOP), viral protein; NMR {Mason-pfizer monkey virus}
Probab=20.07 E-value=38 Score=23.41 Aligned_cols=28 Identities=4% Similarity=-0.180 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHH
Q psy11108 17 CPYVAGQASFLSGVSQKKERFYHVEQAL 44 (106)
Q Consensus 17 ~~~~~~lW~~LA~~AL~~~~l~iAe~Af 44 (106)
..=.|.+|..||.++|...++-+=+..|
T Consensus 51 ~~LtP~DW~~lara~Ls~gqyllWkse~ 78 (140)
T 2kgf_A 51 NWLTPTDWNTLVRAVLSGGDHLLWKSEF 78 (140)
T ss_dssp SBCCHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHcCcchhHHHHHHH
Confidence 3445999999999999988865544443
Done!