RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy11108
         (106 letters)



>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
           protein; 2.50A {Saccharomyces cerevisiae}
          Length = 814

 Score = 29.7 bits (67), Expect = 0.16
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 40  VEQALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQHQGRFQTA 82
             +A  N  D   L L+ S     + ++  A  A+  G+F  A
Sbjct: 700 AIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLA 742


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.1 bits (62), Expect = 0.55
 Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 30/79 (37%)

Query: 8    IASRHSFVL------CP---YV-AGQASFLSGVSQKKERFYHVEQALVNCQDYAGLQLIK 57
            +  R  +++           YV AG    L  +             + N  ++  LQ I 
Sbjct: 1833 VGKRTGWLVEIVNYNVENQQYVAAGD---LRAL-----------DTVTNVLNFIKLQKID 1878

Query: 58   SLRALP-----DDIMKHAY 71
             +  L      +++  H +
Sbjct: 1879 -IIELQKSLSLEEVEGHLF 1896



 Score = 26.2 bits (57), Expect = 2.4
 Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 24/54 (44%)

Query: 6   AVIASRHSFVLCPYVAGQASFLSGV--------------------SQKKERFYH 39
           +++    + V    V+G    L G+                    S++K +F +
Sbjct: 369 SLVNGAKNLV----VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN 418



 Score = 25.4 bits (55), Expect = 4.6
 Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 26/74 (35%)

Query: 39  HVEQALVNCQDYAGLQLI-----KSLRALPDDIMK-HAYIAQHQGR--FQTAENYQLQAD 90
            VE +LVN        L+     +SL  L   + K  A     Q R  F         ++
Sbjct: 365 QVEISLVNGAK----NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPF---------SE 411

Query: 91  RRTWKSKPSYWTRF 104
           R     K  +  RF
Sbjct: 412 R-----KLKFSNRF 420


>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
          structural genomics conso SGC, microtubule, motor
          protein, phosphoprotein; 2.70A {Homo sapiens} PDB:
          3ceq_A
          Length = 283

 Score = 25.2 bits (56), Expect = 4.4
 Identities = 4/21 (19%), Positives = 7/21 (33%)

Query: 69 HAYIAQHQGRFQTAENYQLQA 89
          H + +       +A     QA
Sbjct: 7  HHHHSSGLVPRGSAVPLCKQA 27


>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation,
           transcription; 1.80A {Drosophila melanogaster} PDB:
           3nth_A* 3nti_A*
          Length = 169

 Score = 24.9 bits (54), Expect = 5.9
 Identities = 8/34 (23%), Positives = 18/34 (52%)

Query: 42  QALVNCQDYAGLQLIKSLRALPDDIMKHAYIAQH 75
           +  V+  D+    + +  R LP+++ K A  ++H
Sbjct: 77  KCEVHFIDFGNNAVTQQFRQLPEELAKPARYSRH 110


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.131    0.404 

Gapped
Lambda     K      H
   0.267   0.0601    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,590,474
Number of extensions: 76752
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 12
Length of query: 106
Length of database: 6,701,793
Length adjustment: 71
Effective length of query: 35
Effective length of database: 4,719,402
Effective search space: 165179070
Effective search space used: 165179070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.7 bits)