RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11108
         (106 letters)



>d1p6va_ b.111.1.1 (A:) Small protein B (SmpB) {Aquifex aeolicus
           [TaxId: 63363]}
          Length = 128

 Score = 27.8 bits (62), Expect = 0.15
 Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 33  KKERF-YHVEQALVNCQDYAGLQL----IKSLRALPDDIMKHAYIAQHQGRFQTAENYQL 87
           K+ +  Y + +        AG+ L    +KSLR       K +++    G       Y  
Sbjct: 11  KEAKAKYDILETYE-----AGIVLKGSEVKSLREKGTVSFKDSFVRIENGEAWLYNLYIA 65

Query: 88  QADRRTWKSKPSYWTR 103
                T ++      R
Sbjct: 66  PYKHATIENHDPLRKR 81


>d1r8da_ a.6.1.3 (A:) Multidrug transporter activator MtaN
          {Bacillus subtilis [TaxId: 1423]}
          Length = 109

 Score = 26.1 bits (57), Expect = 0.56
 Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 12/55 (21%)

Query: 19 YVAGQASFLSGVSQKKERFYHVEQAL------------VNCQDYAGLQLIKSLRA 61
          Y   Q + +SGVS +    Y   + L             +  D   LQ I   + 
Sbjct: 3  YQVKQVAEISGVSIRTLHHYDNIELLNPSALTDAGYRLYSDADLERLQQILFFKE 57


>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2
          {Corynebacterium ammoniagenes [TaxId: 1697]}
          Length = 284

 Score = 24.7 bits (53), Expect = 2.6
 Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 62 LPDDIMKHAYIAQHQGRFQTAENYQLQADRRTWKS 96
          +PD+     +  +  G F   E   +  D ++W  
Sbjct: 11 IPDEKDLEVW-DRLTGNFWLPEKIPVSNDIQSWNK 44


>d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia
          coli [TaxId: 562]}
          Length = 127

 Score = 24.3 bits (52), Expect = 2.6
 Identities = 10/86 (11%), Positives = 29/86 (33%), Gaps = 16/86 (18%)

Query: 22 GQASFLSGVSQKKERFYHVE------------QALVNCQDYAGLQLIKSLRAL---PDDI 66
             + ++G++ K  RFY  +                  Q    L L++  R +    ++ 
Sbjct: 4  SDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHLNELTLLRQARQVGFNLEES 63

Query: 67 MKHAYIAQHQGRFQTAENYQLQADRR 92
           +   +     +  +A+  +   ++ 
Sbjct: 64 GELVNLFND-PQRHSADVKRRTLEKV 88


>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli
           [TaxId: 562]}
          Length = 339

 Score = 24.0 bits (51), Expect = 4.3
 Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 4/44 (9%)

Query: 65  DIMKH----AYIAQHQGRFQTAENYQLQADRRTWKSKPSYWTRF 104
           D  K+      I +    F   E   +  DR  +++ P +    
Sbjct: 29  DQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHI 72


>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella
          typhimurium [TaxId: 90371]}
          Length = 283

 Score = 23.9 bits (51), Expect = 5.2
 Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 1/35 (2%)

Query: 62 LPDDIMKHAYIAQHQGRFQTAENYQLQADRRTWKS 96
          + DD     +  +    F   E   L  D   W++
Sbjct: 9  IQDDKDLEVW-NRLTSNFWLPEKVPLSNDIPAWQT 42


>d1j58a_ b.82.1.2 (A:) Oxalate decarboxylase OxdC (YvrK) {Bacillus
           subtilis [TaxId: 1423]}
          Length = 372

 Score = 23.8 bits (51), Expect = 6.1
 Identities = 6/24 (25%), Positives = 11/24 (45%)

Query: 48  QDYAGLQLIKSLRALPDDIMKHAY 71
             YA + L + L  LP+  ++   
Sbjct: 331 DHYADVSLNQWLAMLPETFVQAHL 354


>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon
           Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 320

 Score = 23.3 bits (49), Expect = 9.3
 Identities = 5/37 (13%), Positives = 17/37 (45%)

Query: 65  DIMKHAYIAQHQGRFQTAENYQLQADRRTWKSKPSYW 101
           + ++ A+     G+ Q      L+ ++   ++ P++ 
Sbjct: 22  NAVEEAFRLYALGKAQMPPKVYLEFEKGDLRAMPAHL 58


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.131    0.404 

Gapped
Lambda     K      H
   0.267   0.0511    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 385,584
Number of extensions: 14296
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 12
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.4 bits)