BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11109
(93 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RC74|DERL2_PONAB Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1
Length = 239
Score = 125 bits (315), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 71/84 (84%)
Query: 2 NAPYLPWVLLGVSILLGNPIWVDLLGIAVGHMYYFIEDVFPNLRGGFRLLQTPRILKVLF 61
AP+LPWVL+G S+LLGN I VDLLGIAVGH+Y+F+EDVFPN GG R+L+TP ILK +F
Sbjct: 150 QAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLEDVFPNQPGGIRILKTPSILKAIF 209
Query: 62 DPHPEDPDYSPLPEDRPGGFDWGE 85
D EDP+Y+PLPE+RPGGF WGE
Sbjct: 210 DTPDEDPNYNPLPEERPGGFAWGE 233
>sp|Q9GZP9|DERL2_HUMAN Derlin-2 OS=Homo sapiens GN=DERL2 PE=1 SV=1
Length = 239
Score = 125 bits (315), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 71/84 (84%)
Query: 2 NAPYLPWVLLGVSILLGNPIWVDLLGIAVGHMYYFIEDVFPNLRGGFRLLQTPRILKVLF 61
AP+LPWVL+G S+LLGN I VDLLGIAVGH+Y+F+EDVFPN GG R+L+TP ILK +F
Sbjct: 150 QAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLEDVFPNQPGGIRILKTPSILKAIF 209
Query: 62 DPHPEDPDYSPLPEDRPGGFDWGE 85
D EDP+Y+PLPE+RPGGF WGE
Sbjct: 210 DTPDEDPNYNPLPEERPGGFAWGE 233
>sp|Q8BNI4|DERL2_MOUSE Derlin-2 OS=Mus musculus GN=Derl2 PE=2 SV=2
Length = 239
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 71/84 (84%)
Query: 2 NAPYLPWVLLGVSILLGNPIWVDLLGIAVGHMYYFIEDVFPNLRGGFRLLQTPRILKVLF 61
AP+LPWVL+G S+LLGN I VDLLGIAVGH+Y+F+ED+FPN GG R+L+TP IL+ +F
Sbjct: 150 QAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLEDIFPNQPGGIRILKTPSILRTIF 209
Query: 62 DPHPEDPDYSPLPEDRPGGFDWGE 85
D EDP+Y+PLPE+RPGGF WGE
Sbjct: 210 DTPDEDPNYNPLPEERPGGFAWGE 233
>sp|Q96Q80|DERL3_HUMAN Derlin-3 OS=Homo sapiens GN=DERL3 PE=1 SV=2
Length = 235
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/78 (69%), Positives = 63/78 (80%)
Query: 2 NAPYLPWVLLGVSILLGNPIWVDLLGIAVGHMYYFIEDVFPNLRGGFRLLQTPRILKVLF 61
AP+LPW L+G S+LLGN I VDLLGIAVGH+YYF+EDVFPN GG RLLQTP LK+L
Sbjct: 150 QAPFLPWALMGFSLLLGNSILVDLLGIAVGHIYYFLEDVFPNQPGGKRLLQTPGFLKLLL 209
Query: 62 DPHPEDPDYSPLPEDRPG 79
D EDP+Y PLPE++PG
Sbjct: 210 DAPAEDPNYLPLPEEQPG 227
>sp|Q0P5E4|DERL3_BOVIN Derlin-3 OS=Bos taurus GN=DERL3 PE=2 SV=1
Length = 231
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 52/78 (66%), Positives = 62/78 (79%)
Query: 2 NAPYLPWVLLGVSILLGNPIWVDLLGIAVGHMYYFIEDVFPNLRGGFRLLQTPRILKVLF 61
AP+LPW L+G+ +LLGN I VDLLGIAVGH+YYF+EDVFPN GG RLL TP LK+L
Sbjct: 150 QAPFLPWALMGLPMLLGNSILVDLLGIAVGHVYYFLEDVFPNQPGGKRLLLTPSFLKLLL 209
Query: 62 DPHPEDPDYSPLPEDRPG 79
D EDP+Y PLPE++PG
Sbjct: 210 DAPEEDPNYLPLPEEQPG 227
>sp|Q9D8K3|DERL3_MOUSE Derlin-3 OS=Mus musculus GN=Derl3 PE=2 SV=1
Length = 228
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 60/77 (77%)
Query: 2 NAPYLPWVLLGVSILLGNPIWVDLLGIAVGHMYYFIEDVFPNLRGGFRLLQTPRILKVLF 61
AP+LPW L+G S+LLGN + DLLGI VGH+YYF+EDVFPN GG RLL TP +LK+L
Sbjct: 150 QAPFLPWALMGFSLLLGNSVVTDLLGILVGHIYYFLEDVFPNQPGGKRLLLTPSVLKLLL 209
Query: 62 DPHPEDPDYSPLPEDRP 78
D EDPDY PLPE++P
Sbjct: 210 DDPQEDPDYLPLPEEQP 226
>sp|Q21997|DERL2_CAEEL Derlin-2 OS=Caenorhabditis elegans GN=der-2 PE=2 SV=2
Length = 237
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 62/91 (68%), Gaps = 8/91 (8%)
Query: 2 NAPYLPWVLLGVSILLGNPIWVDLLGIAVGHMYYFIEDVFPNLRGGFRLLQTPRILKVLF 61
APYLPWVLL S+LLGN VD +GIA GH+Y+F+EDVFP G R L+TP+ L LF
Sbjct: 148 TAPYLPWVLLLFSLLLGNNAVVDFMGIACGHIYFFLEDVFPFQEHGKRFLKTPQWLVYLF 207
Query: 62 DP-HPEDPDYSPLPED-RPGGFDWG-ERPNN 89
D PE PLPED RPGGF+WG E+P
Sbjct: 208 DERRPE-----PLPEDERPGGFEWGDEQPEQ 233
>sp|Q851X7|DERL2_ORYSJ Derlin-2 OS=Oryza sativa subsp. japonica GN=DER2 PE=2 SV=1
Length = 249
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 45/60 (75%), Gaps = 1/60 (1%)
Query: 2 NAPYLPWVLLGVSILLGNPIWVDLLGIAVGHMYYFIEDVFPNLRGGFRLLQTPRILKVLF 61
A YLPWVLLG SIL+G+ WVDLLG+ GH+YYF+EDV+P + G R L+TP +K LF
Sbjct: 160 TAAYLPWVLLGFSILVGSSTWVDLLGMIAGHVYYFLEDVYPRMTGR-RPLKTPSFIKALF 218
>sp|Q4G2J4|DER21_MAIZE Derlin-2.1 OS=Zea mays GN=DER2.1 PE=2 SV=2
Length = 249
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 45/60 (75%), Gaps = 1/60 (1%)
Query: 2 NAPYLPWVLLGVSILLGNPIWVDLLGIAVGHMYYFIEDVFPNLRGGFRLLQTPRILKVLF 61
A YLPWVLLG SIL+G+ WVDLLG+ GH+YYF+EDV+P + G R L+TP +K LF
Sbjct: 160 TAAYLPWVLLGFSILVGSSTWVDLLGMIAGHVYYFLEDVYPRMTGR-RPLKTPSFIKALF 218
>sp|Q4G2J3|DER22_MAIZE Derlin-2.2 OS=Zea mays GN=DER2.2 PE=2 SV=1
Length = 249
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/60 (60%), Positives = 45/60 (75%), Gaps = 1/60 (1%)
Query: 2 NAPYLPWVLLGVSILLGNPIWVDLLGIAVGHMYYFIEDVFPNLRGGFRLLQTPRILKVLF 61
A YLPWVLLG SIL+G+ WVDLLG+ GH+YYF+EDV+P + G R L+TP +K LF
Sbjct: 160 TAAYLPWVLLGFSILVGSSTWVDLLGMIAGHVYYFLEDVYPRMTGR-RPLKTPSFIKALF 218
>sp|Q9ZS88|DER22_ARATH Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 SV=1
Length = 244
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 48/82 (58%), Gaps = 7/82 (8%)
Query: 2 NAPYLPWVLLGVSILLGNPIWVDLLGIAVGHMYYFIEDVFPNLRGGFRLLQTPRILKVLF 61
A YLPWVLLG SIL+G WVDLLG+ GH YYF+ +V+P + R L+TP LK LF
Sbjct: 160 TAAYLPWVLLGFSILVGASAWVDLLGMIAGHAYYFLAEVYPRMTNR-RPLKTPSFLKALF 218
Query: 62 D------PHPEDPDYSPLPEDR 77
PED ++ P D
Sbjct: 219 ADEPVVVARPEDVRFAAAPFDE 240
>sp|Q8VZ96|DER21_ARATH Derlin-2.1 OS=Arabidopsis thaliana GN=DER2.1 PE=2 SV=3
Length = 244
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 2 NAPYLPWVLLGVSILLGNPIWVDLLGIAVGHMYYFIEDVFPNLRGGFRLLQTPRILKVLF 61
A YLPWVLLG SIL+G W D LG+ GH YYF+ V+P + R L+TP LK LF
Sbjct: 160 TAAYLPWVLLGFSILVGASAWGDFLGMIAGHAYYFLAFVYPRMTDR-RPLKTPSFLKALF 218
Query: 62 D------PHPEDPDYSPLPEDR 77
PED ++ P D
Sbjct: 219 ADEPVVIARPEDVRFAHAPFDE 240
>sp|Q54NN1|DERL2_DICDI Probable derlin-2 homolog OS=Dictyostelium discoideum GN=derl2 PE=3
SV=1
Length = 254
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 2 NAPYLPWVLLGVSILLGNPIWVDLLGIAVGHMYYFIEDVFPNLRGGFRLLQTPRILKVLF 61
+APYLPWV+L + L + + DLLG GH YYF+ED +P L RLL+TP LK L
Sbjct: 156 SAPYLPWVILIMGYLFNHDLTTDLLGAVAGHAYYFLEDAYP-LISNRRLLKTPGFLKNLM 214
Query: 62 DPHPE 66
D +
Sbjct: 215 DGQEQ 219
>sp|Q54IC9|DERL1_DICDI Probable derlin-1 homolog OS=Dictyostelium discoideum GN=derl1 PE=3
SV=1
Length = 242
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 12/90 (13%)
Query: 5 YLPWVLLGVSIL-LGNPIWVDLLGIAVGHMYYFIEDVFPNLRGGFRLLQTPRILKVLFDP 63
YLPWV L L G+P + D L I GH+++++ D++P G L++TP+ + +F+
Sbjct: 151 YLPWVFLVAHFLQTGHPPYSDFLAIVSGHIFFYLTDIYPRANGVPALIKTPKFITNIFNK 210
Query: 64 HPEDPDY--------SPLPEDRPGGFDWGE 85
+P+ P+ E GG++WG+
Sbjct: 211 GDRNPNNVRRDPRTGRPIQE---GGYNWGQ 237
>sp|Q8VZU9|DERL1_ARATH Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1
Length = 266
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 1 MNAPYLPWVLLGVSILLGNPIWVDLLGIAVGHMYYFIEDVFPNLRGGFRLLQTPR 55
+ A YLPW +L + ++ G+PI DLLGI GH+YYF+ + P L G L+TP+
Sbjct: 149 LKAFYLPWAMLALDVIFGSPIMPDLLGIIAGHLYYFLTVLHP-LATGKNYLKTPK 202
>sp|Q99J56|DERL1_MOUSE Derlin-1 OS=Mus musculus GN=Derl1 PE=2 SV=1
Length = 251
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 2 NAPYLPWVLLGVSILLGNPIWVDLLGIAVGHMYYFIEDVFPNLRGGFRLLQTPRIL 57
A YLPWV+LG + ++G + +L+G VGH+Y+F+ +P GG L TP+ L
Sbjct: 151 KACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPMDLGGRNFLSTPQFL 206
>sp|Q9BUN8|DERL1_HUMAN Derlin-1 OS=Homo sapiens GN=DERL1 PE=1 SV=1
Length = 251
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 2 NAPYLPWVLLGVSILLGNPIWVDLLGIAVGHMYYFIEDVFPNLRGGFRLLQTPRIL 57
A YLPWV+LG + ++G + +L+G VGH+Y+F+ +P GG L TP+ L
Sbjct: 151 KACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPMDLGGRNFLSTPQFL 206
>sp|Q71SS4|DERL1_BOVIN Derlin-1 OS=Bos taurus GN=DERL1 PE=2 SV=1
Length = 251
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 2 NAPYLPWVLLGVSILLGNPIWVDLLGIAVGHMYYFIEDVFPNLRGGFRLLQTPRIL 57
A YLPWV+LG + ++G + +L+G VGH+Y+F+ +P GG L TP+ L
Sbjct: 151 KACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPMDLGGRNFLSTPQFL 206
>sp|Q5R9W3|DERL1_PONAB Derlin-1 OS=Pongo abelii GN=DERL1 PE=2 SV=1
Length = 251
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 2 NAPYLPWVLLGVSILLGNPIWVDLLGIAVGHMYYFIEDVFPNLRGGFRLLQTPRIL 57
A YLPWV+LG + ++G + +L+G VGH+Y+F+ +P GG L TP+ L
Sbjct: 151 KACYLPWVILGFNYIIGGSVINELIGNLVGHLYFFLMFRYPMDLGGRNFLSTPQFL 206
>sp|Q4G2J5|DER12_MAIZE Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1
Length = 243
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 1 MNAPYLPWVLLGVSILLGNPIWVDLLGIAVGHMYYFIEDVFPNLRGGFRLLQTPR 55
+ A YLPWV+L + ++ G+P+ LLGI VGH+YY+ + P L G L+TP+
Sbjct: 149 LKAFYLPWVMLLLDVIFGSPLMPGLLGIMVGHLYYYFAVLHP-LATGKNYLKTPK 202
>sp|Q06397|DERL1_ORYSJ Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 PE=2 SV=2
Length = 242
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 1 MNAPYLPWVLLGVSILLGNPIWVDLLGIAVGHMYYFIEDVFPNLRGGFRLLQTP 54
+ + YLPW +LG+ ++ G+ I LLGI VGH YYF+ + P L G L+TP
Sbjct: 149 LRSFYLPWAMLGLDVIFGSEILPGLLGILVGHTYYFLSVLHP-LATGKNYLKTP 201
>sp|Q9VQ57|DERL1_DROME Derlin-1 OS=Drosophila melanogaster GN=Der-1 PE=2 SV=1
Length = 245
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 2 NAPYLPWVLLGVSILLGNPIWVDLLGIAVGHMYYFIEDVFPNLRGGFRLLQTPRILKVL 60
A YLPWVL + + L+GI VGH+YYF + + GG LL+TP+ LK L
Sbjct: 150 KAMYLPWVLAAFEFIFHFSL-ASLVGIFVGHVYYFFKFQYSQDLGGTPLLETPQFLKRL 207
>sp|Q4G2J6|DER11_MAIZE Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2
Length = 243
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 1 MNAPYLPWVLLGVSILLGNPIWVDLLGIAVGHMYYFIEDVFPNLRGGFRLLQTPR 55
+ + YLPW +L + ++ G+ + LLGI VGH+YYF + P L G L+TP+
Sbjct: 149 LRSFYLPWAMLLLDVIFGSSLMPGLLGIMVGHLYYFFAVLHP-LATGKSYLKTPK 202
>sp|Q93561|DERL1_CAEEL Derlin-1 OS=Caenorhabditis elegans GN=cup-2 PE=2 SV=1
Length = 245
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 3 APYLPWVLLGVSILLGNPIWVDLLGIAVGHMYYFIEDVFPNLRGGFRLLQTPRILKVLF- 61
A YLPWVL G + +L +L+GI VGH Y+F+ +P+ G L+ TP L L
Sbjct: 151 ARYLPWVLWGFNAVLRGGGTNELVGILVGHAYFFVALKYPD-EYGVDLISTPEFLHRLIP 209
Query: 62 ----DPHPEDPDYSPLPEDRPGGFDW 83
H +D + +P G W
Sbjct: 210 DEDGGIHGQDGNIRG-ARQQPRGHQW 234
>sp|P16893|TRAP_PLAFA Thrombospondin-related anonymous protein OS=Plasmodium falciparum
GN=TRAP PE=1 SV=1
Length = 559
Score = 32.7 bits (73), Expect = 0.74, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 38 EDVFPNLRGGFRLLQTPRILKVLFDPHPEDPDYSPLPED----RPGGFDWGERPNNP 90
ED P RG +Q P + + D +P++P SP PE+ P GFD E P NP
Sbjct: 300 EDDQPRPRGDNSSVQKPE--ENIIDNNPQEP--SPNPEEGKDENPNGFDLDENPENP 352
>sp|O94458|YFFH_SCHPO Uncharacterized derlin-like protein C1687.17c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC1687.17c PE=3 SV=2
Length = 190
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 1 MNAPYLPWVLLGVSILLGNPI-WVDLLGIAVGHMYYFIED 39
+ APY+PWV++ + L +DL+ +GH+Y+F+ D
Sbjct: 147 VKAPYVPWVMVLLRWLRTGIFPLLDLISALIGHVYFFVTD 186
>sp|B4UFY1|RUVB_ANASK Holliday junction ATP-dependent DNA helicase RuvB
OS=Anaeromyxobacter sp. (strain K) GN=ruvB PE=3 SV=1
Length = 342
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 18 GNPIWVDLLGIAVGHMYYFIEDVF-PNL-RGGFRLLQTPRILKVLFDPHPEDPDYSPLPE 75
G P+ +D + AVG +EDV+ P L R G+ L +TPR L Y+ L
Sbjct: 279 GGPVGIDAVAAAVGEESGTLEDVYEPFLVREGY-LARTPRGRVAL------PAAYAHLGR 331
Query: 76 DRPGG 80
DRPGG
Sbjct: 332 DRPGG 336
>sp|B8JF05|RUVB_ANAD2 Holliday junction ATP-dependent DNA helicase RuvB
OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC
BAA-258) GN=ruvB PE=3 SV=1
Length = 342
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 18 GNPIWVDLLGIAVGHMYYFIEDVF-PNL-RGGFRLLQTPRILKVLFDPHPEDPDYSPLPE 75
G P+ +D + AVG +EDV+ P L R G+ L +TPR L Y+ L
Sbjct: 279 GGPVGIDAVAAAVGEESGTLEDVYEPFLVREGY-LARTPRGRVAL------PAAYAHLGR 331
Query: 76 DRPGG 80
DRPGG
Sbjct: 332 DRPGG 336
>sp|A7H910|RUVB_ANADF Holliday junction ATP-dependent DNA helicase RuvB
OS=Anaeromyxobacter sp. (strain Fw109-5) GN=ruvB PE=3
SV=1
Length = 342
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 18 GNPIWVDLLGIAVGHMYYFIEDVF-PNL-RGGFRLLQTPRILKVLFDPHPEDPDYSPLPE 75
G P+ +D + AVG +EDV+ P L R GF L +TPR L P Y+ L
Sbjct: 279 GGPVGIDAVAAAVGEERDTLEDVYEPFLVREGF-LARTPRGRVAL------PPAYAHLGR 331
Query: 76 DRPGG 80
+RP G
Sbjct: 332 ERPQG 336
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.152 0.522
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,561,836
Number of Sequences: 539616
Number of extensions: 2010355
Number of successful extensions: 4081
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4053
Number of HSP's gapped (non-prelim): 33
length of query: 93
length of database: 191,569,459
effective HSP length: 63
effective length of query: 30
effective length of database: 157,573,651
effective search space: 4727209530
effective search space used: 4727209530
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)