Query psy11109
Match_columns 93
No_of_seqs 105 out of 347
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 18:10:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11109.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11109hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0858|consensus 99.9 6.1E-24 1.3E-28 159.7 5.8 85 1-87 148-232 (239)
2 PF04511 DER1: Der1-like famil 99.7 1E-18 2.2E-23 126.7 4.3 55 1-55 142-197 (197)
3 COG5291 Predicted membrane pro 98.9 1.9E-10 4.1E-15 88.3 -0.2 64 1-66 156-220 (313)
4 KOG2632|consensus 88.7 0.5 1.1E-05 36.5 3.2 37 1-37 157-195 (258)
5 PF13214 DUF4022: Protein of u 51.5 19 0.0004 23.0 2.6 28 10-40 54-81 (83)
6 PF06946 Phage_holin_5: Phage 50.9 16 0.00034 24.3 2.3 15 24-38 41-55 (93)
7 PRK15065 PTS system mannose-sp 47.9 30 0.00066 26.6 3.8 43 2-44 203-248 (262)
8 PF11821 DUF3341: Protein of u 36.9 61 0.0013 23.5 3.8 37 24-60 60-98 (173)
9 PF13829 DUF4191: Domain of un 36.7 28 0.00061 26.4 2.1 32 4-37 25-56 (224)
10 PRK09430 djlA Dna-J like membr 35.7 41 0.00089 25.6 2.9 25 11-36 10-34 (267)
11 PF04304 DUF454: Protein of un 30.1 80 0.0017 18.8 3.0 31 8-38 37-70 (71)
12 PF04774 HABP4_PAI-RBP1: Hyalu 28.7 43 0.00093 21.5 1.7 10 77-86 22-31 (106)
13 PRK15137 DNA-specific endonucl 27.9 19 0.00042 27.6 -0.1 8 85-92 219-226 (235)
14 COG5336 Uncharacterized protei 26.9 52 0.0011 22.7 1.9 8 25-32 82-89 (116)
15 PF04231 Endonuclease_1: Endon 25.8 9.2 0.0002 28.6 -2.1 20 23-43 153-172 (218)
16 PF03991 Prion_octapep: Copper 22.8 56 0.0012 12.5 0.9 6 80-85 3-8 (8)
17 CHL00186 psaI photosystem I su 22.5 40 0.00087 18.7 0.6 12 1-12 1-12 (36)
18 TIGR00822 EII-Sor PTS system, 21.1 1.2E+02 0.0027 23.4 3.2 39 2-40 202-243 (265)
19 cd06461 M2_ACE Peptidase famil 20.6 62 0.0013 26.9 1.6 31 29-59 254-299 (477)
No 1
>KOG0858|consensus
Probab=99.89 E-value=6.1e-24 Score=159.71 Aligned_cols=85 Identities=52% Similarity=0.933 Sum_probs=72.7
Q ss_pred CCCcchHHHHHHHHHHhcCchhhhhHHhhhhhhhhhhhhhccCCCCCcccccChHHHHHhhCCCCCCCCCCCCCCCCCCC
Q psy11109 1 MNAPYLPWVLLGVSILLGNPIWVDLLGIAVGHMYYFIEDVFPNLRGGFRLLQTPRILKVLFDPHPEDPDYSPLPEDRPGG 80 (93)
Q Consensus 1 i~a~yLPwvll~~~~l~~~~~~~dl~Gi~vGHiyyFl~~v~P~~~gg~~~l~TP~fl~~lf~~~~~~~~~g~~~~~~~g~ 80 (93)
+||+||||||++++++.+++.+.|++||++||+|||++|++|++.+|+++++||+|+++++++. .....+++.|++++
T Consensus 148 f~a~YlPwvll~fs~l~g~~~~~dllGi~~GHiy~fl~~~~p~~~gg~~~l~TP~~l~rl~~~~-~~~~~~~~~~~~~g- 225 (239)
T KOG0858|consen 148 FKAPYLPWVLLGFSFLFGGSILVDLLGIIVGHIYYFLDDVYPRDYGGRDLLKTPQFLKRLFADS-PPTSIRRARELGTG- 225 (239)
T ss_pred CccccchHHHHHHHHHhCCchHHHHHhhhhheeEEEEeeeccCCcCCcCcccCHHHHHHhcCCC-CCccccccccCCCC-
Confidence 5899999999999999999989999999999999999999999989999999999999999884 22333444444554
Q ss_pred CCCCCCC
Q psy11109 81 FDWGERP 87 (93)
Q Consensus 81 ~~WG~g~ 87 (93)
+.||+|.
T Consensus 226 ~~~~~g~ 232 (239)
T KOG0858|consen 226 APWGEGV 232 (239)
T ss_pred CCCCccc
Confidence 9996554
No 2
>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins. For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.
Probab=99.74 E-value=1e-18 Score=126.69 Aligned_cols=55 Identities=56% Similarity=1.120 Sum_probs=52.8
Q ss_pred CCCcchHHHHHHHHHHhcC-chhhhhHHhhhhhhhhhhhhhccCCCCCcccccChH
Q psy11109 1 MNAPYLPWVLLGVSILLGN-PIWVDLLGIAVGHMYYFIEDVFPNLRGGFRLLQTPR 55 (93)
Q Consensus 1 i~a~yLPwvll~~~~l~~~-~~~~dl~Gi~vGHiyyFl~~v~P~~~gg~~~l~TP~ 55 (93)
|||+||||+++++++++++ +.+.|++||++||+||||+|+||+..+|+++|+||+
T Consensus 142 i~a~ylP~~~~~~~~l~~~~~~~~~l~Gi~~Ghly~fl~~~~p~~~~G~~~l~tP~ 197 (197)
T PF04511_consen 142 IKAKYLPWVLLAFSLLFGGSSPIPDLLGILVGHLYYFLKDIYPRLPGGKDLLKTPQ 197 (197)
T ss_pred EChhhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcccccCCCccCCCcC
Confidence 6899999999999999998 788999999999999999999999989999999996
No 3
>COG5291 Predicted membrane protein [Function unknown]
Probab=98.91 E-value=1.9e-10 Score=88.30 Aligned_cols=64 Identities=39% Similarity=0.776 Sum_probs=56.2
Q ss_pred CCCcchHHHHHHHHHHhcC-chhhhhHHhhhhhhhhhhhhhccCCCCCcccccChHHHHHhhCCCCC
Q psy11109 1 MNAPYLPWVLLGVSILLGN-PIWVDLLGIAVGHMYYFIEDVFPNLRGGFRLLQTPRILKVLFDPHPE 66 (93)
Q Consensus 1 i~a~yLPwvll~~~~l~~~-~~~~dl~Gi~vGHiyyFl~~v~P~~~gg~~~l~TP~fl~~lf~~~~~ 66 (93)
++++|||+++++|+++.+. ..+.|++|+++||.+.+|.+|||+. |++++.||.|.++++.+++.
T Consensus 156 v~gkYlP~Illgfsfl~~~g~~i~~vlGf~~g~~~h~~g~I~~mi--~r~~~~t~~~~~~~~~~~p~ 220 (313)
T COG5291 156 VPGKYLPFILLGFSFLSRRGISIDDVLGFVVGHLFHYFGDIYPMI--GRDILSTPCWVKKLFNEHPS 220 (313)
T ss_pred cchhhhhHHHHHHHHHhcCCccceeeeeeeeccccccccchhhhh--hcccCCCcccccccccCCch
Confidence 4789999999999999995 5678999999999999999999997 68899999999988765543
No 4
>KOG2632|consensus
Probab=88.73 E-value=0.5 Score=36.55 Aligned_cols=37 Identities=32% Similarity=0.542 Sum_probs=31.3
Q ss_pred CCCcchHHHHHHHH-HHhcC-chhhhhHHhhhhhhhhhh
Q psy11109 1 MNAPYLPWVLLGVS-ILLGN-PIWVDLLGIAVGHMYYFI 37 (93)
Q Consensus 1 i~a~yLPwvll~~~-~l~~~-~~~~dl~Gi~vGHiyyFl 37 (93)
||+.|-||+++.++ +++.+ |.+..++|+++|-.|-|.
T Consensus 157 iP~~l~Pw~lLi~~~~lvp~aSFlghl~GllvG~ay~~~ 195 (258)
T KOG2632|consen 157 IPIVLAPWALLIATQILVPQASFLGHLCGLLVGYAYAFS 195 (258)
T ss_pred ccHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHH
Confidence 57889999988887 66655 688999999999999884
No 5
>PF13214 DUF4022: Protein of unknown function (DUF4022)
Probab=51.49 E-value=19 Score=23.04 Aligned_cols=28 Identities=36% Similarity=0.749 Sum_probs=20.4
Q ss_pred HHHHHHHhcCchhhhhHHhhhhhhhhhhhhh
Q psy11109 10 LLGVSILLGNPIWVDLLGIAVGHMYYFIEDV 40 (93)
Q Consensus 10 ll~~~~l~~~~~~~dl~Gi~vGHiyyFl~~v 40 (93)
-+.+|++.|. ..++|++++-.|+|+.-+
T Consensus 54 cl~~slllgt---~silgl~~apayfflqli 81 (83)
T PF13214_consen 54 CLLLSLLLGT---ASILGLCVAPAYFFLQLI 81 (83)
T ss_pred HHHHHHHHhH---HHHHHHHHhHHHHHHHHh
Confidence 3455666664 457999999999998643
No 6
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=50.88 E-value=16 Score=24.30 Aligned_cols=15 Identities=27% Similarity=0.501 Sum_probs=8.4
Q ss_pred hhHHhhhhhhhhhhh
Q psy11109 24 DLLGIAVGHMYYFIE 38 (93)
Q Consensus 24 dl~Gi~vGHiyyFl~ 38 (93)
-++|+++|-++++++
T Consensus 41 ~viGilLG~~~~~~~ 55 (93)
T PF06946_consen 41 VVIGILLGAAAYPLT 55 (93)
T ss_pred HHHHHHHHHHhhhcC
Confidence 345666666555554
No 7
>PRK15065 PTS system mannose-specific transporter subunit IIC; Provisional
Probab=47.87 E-value=30 Score=26.64 Aligned_cols=43 Identities=14% Similarity=0.397 Sum_probs=32.7
Q ss_pred CCcchHHHHHHHHHHh--cCc-hhhhhHHhhhhhhhhhhhhhccCC
Q psy11109 2 NAPYLPWVLLGVSILL--GNP-IWVDLLGIAVGHMYYFIEDVFPNL 44 (93)
Q Consensus 2 ~a~yLPwvll~~~~l~--~~~-~~~dl~Gi~vGHiyyFl~~v~P~~ 44 (93)
|-+++||.+++|-+.. +-+ +...++|++++-+||+.++.+-|.
T Consensus 203 ~k~~~~ff~lGFvl~ayl~l~~l~iAiig~~iA~i~~~~~~~~~~~ 248 (262)
T PRK15065 203 TRELMPFFYLGFVLAAFTNLNLIALGVIGVVLALIYLQLSPKYGRV 248 (262)
T ss_pred ccchHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhccccccc
Confidence 4568999999887655 333 445789999999998888877765
No 8
>PF11821 DUF3341: Protein of unknown function (DUF3341); InterPro: IPR021776 This family of proteins are functionally uncharacterised. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.
Probab=36.87 E-value=61 Score=23.47 Aligned_cols=37 Identities=22% Similarity=0.428 Sum_probs=25.4
Q ss_pred hhHHhhhhhhhhhhhhh--ccCCCCCcccccChHHHHHh
Q psy11109 24 DLLGIAVGHMYYFIEDV--FPNLRGGFRLLQTPRILKVL 60 (93)
Q Consensus 24 dl~Gi~vGHiyyFl~~v--~P~~~gg~~~l~TP~fl~~l 60 (93)
.++|.+.|-+.-+.+.. ||..-|||.+..-|.|+--.
T Consensus 60 Gl~G~~~~~~l~~~t~~~dyP~~iGGKP~~S~Pafipi~ 98 (173)
T PF11821_consen 60 GLTGFATAFLLQWYTNAVDYPLNIGGKPLFSWPAFIPIT 98 (173)
T ss_pred HHHHHHHHHHHHHHHHhcccceecCCCCCCCCcccchHH
Confidence 34777777665444443 89887899888888776443
No 9
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=36.69 E-value=28 Score=26.41 Aligned_cols=32 Identities=31% Similarity=0.743 Sum_probs=15.4
Q ss_pred cchHHHHHHHHHHhcCchhhhhHHhhhhhhhhhh
Q psy11109 4 PYLPWVLLGVSILLGNPIWVDLLGIAVGHMYYFI 37 (93)
Q Consensus 4 ~yLPwvll~~~~l~~~~~~~dl~Gi~vGHiyyFl 37 (93)
+.++|.|++--+. .-.+.-++|++.||.+|++
T Consensus 25 p~l~~~ml~a~l~--~~~v~v~ig~l~~~~~~~~ 56 (224)
T PF13829_consen 25 PKLPWLMLGAFLG--PIAVFVLIGLLFGSWWYWL 56 (224)
T ss_pred cchHHHHHHHHHH--HHHHHHHHHHHHccHHHHH
Confidence 4567766644221 1123344555555555554
No 10
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=35.68 E-value=41 Score=25.60 Aligned_cols=25 Identities=32% Similarity=0.709 Sum_probs=17.9
Q ss_pred HHHHHHhcCchhhhhHHhhhhhhhhh
Q psy11109 11 LGVSILLGNPIWVDLLGIAVGHMYYF 36 (93)
Q Consensus 11 l~~~~l~~~~~~~dl~Gi~vGHiyyF 36 (93)
.++.+++++ ++.-++|.++||++.=
T Consensus 10 ~~~G~~~~g-~~Ga~~G~~~Gh~~d~ 34 (267)
T PRK09430 10 FAFGFLFGG-FFGALLGLLIGHMFDK 34 (267)
T ss_pred HHHHHHHhh-HHHHHHHHHHHhHHhh
Confidence 345555554 6688999999997753
No 11
>PF04304 DUF454: Protein of unknown function (DUF454); InterPro: IPR007401 This is a predicted membrane protein.
Probab=30.10 E-value=80 Score=18.77 Aligned_cols=31 Identities=19% Similarity=0.391 Sum_probs=18.7
Q ss_pred HHHHHHH-HHhcCc-hh-hhhHHhhhhhhhhhhh
Q psy11109 8 WVLLGVS-ILLGNP-IW-VDLLGIAVGHMYYFIE 38 (93)
Q Consensus 8 wvll~~~-~l~~~~-~~-~dl~Gi~vGHiyyFl~ 38 (93)
|+.++++ ++...+ .+ .-+..+.+++.+|+++
T Consensus 37 ~~~~~~s~~~~~~~~~~~~~l~~~~~~~~~~i~~ 70 (71)
T PF04304_consen 37 WLSMGISAFFFVPNLWVRIVLAAILLIVAIYILR 70 (71)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHhee
Confidence 5566777 555555 22 2355666778888764
No 12
>PF04774 HABP4_PAI-RBP1: Hyaluronan / mRNA binding family; InterPro: IPR006861 This entry includes the HABP4 protein family of hyaluronan-binding proteins, and the PAI-1 mRNA-binding protein, PAI-RBP1. HABP4 has been observed to bind hyaluronan (a glucosaminoglycan), but it is not known whether this is its primary role in vivo. It has also been observed to bind RNA, but with a lower affinity than that for hyaluronan []. PAI-1 mRNA-binding protein specifically binds the mRNA of type-1 plasminogen activator inhibitor (PAI-1), and is thought to be involved in regulation of mRNA stability []. However, in both cases, the sequence motifs predicted to be important for ligand binding are not conserved throughout the family, so it is not known whether members of this family share a common function. Hyaluronan/mRNA-binding protein may be involved in nuclear functions such as the remodeling of chromatin and the regulation of transcription [, ].
Probab=28.74 E-value=43 Score=21.45 Aligned_cols=10 Identities=30% Similarity=0.890 Sum_probs=7.3
Q ss_pred CCCCCCCCCC
Q psy11109 77 RPGGFDWGER 86 (93)
Q Consensus 77 ~~g~~~WG~g 86 (93)
..|.||||..
T Consensus 22 G~G~~NWG~~ 31 (106)
T PF04774_consen 22 GGGAHNWGSP 31 (106)
T ss_pred CccccCCCCc
Confidence 4567999953
No 13
>PRK15137 DNA-specific endonuclease I; Provisional
Probab=27.85 E-value=19 Score=27.55 Aligned_cols=8 Identities=25% Similarity=0.858 Sum_probs=7.0
Q ss_pred CCCCCCCC
Q psy11109 85 ERPNNPFI 92 (93)
Q Consensus 85 ~g~~~~~~ 92 (93)
||+|||||
T Consensus 219 QGNrNPFI 226 (235)
T PRK15137 219 QGNHNPYV 226 (235)
T ss_pred hCCCChhH
Confidence 88999987
No 14
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.86 E-value=52 Score=22.70 Aligned_cols=8 Identities=50% Similarity=0.866 Sum_probs=4.8
Q ss_pred hHHhhhhh
Q psy11109 25 LLGIAVGH 32 (93)
Q Consensus 25 l~Gi~vGH 32 (93)
++|+++|-
T Consensus 82 llGf~AG~ 89 (116)
T COG5336 82 LLGFGAGV 89 (116)
T ss_pred HHHHHHHH
Confidence 46666664
No 15
>PF04231 Endonuclease_1: Endonuclease I; InterPro: IPR007346 Bacterial periplasmic or secreted (3.1.21.1 from EC) Escherichia coli endonuclease I (EndoI) is a sequence independent endonuclease located in the periplasm. It is inhibited by different RNA species. It is thought to normally generate double strand breaks in DNA, except in the presence of high salt concentrations and RNA, when it generates single strand breaks in DNA. Its biological role is unknown []. Other family members are known to be extracellular []. This family also includes a non-specific, Mg2+-activated ribonuclease precursor (Q03091 from SWISSPROT) [].; GO: 0004518 nuclease activity; PDB: 1OUO_A 1OUP_B 2IVK_C 2VND_A 2PU3_A 2G7F_A 2G7E_A.
Probab=25.82 E-value=9.2 Score=28.59 Aligned_cols=20 Identities=10% Similarity=0.391 Sum_probs=10.4
Q ss_pred hhhHHhhhhhhhhhhhhhccC
Q psy11109 23 VDLLGIAVGHMYYFIEDVFPN 43 (93)
Q Consensus 23 ~dl~Gi~vGHiyyFl~~v~P~ 43 (93)
.+.=|-+|= +|+|+...||.
T Consensus 153 d~~KGdIAR-a~fYm~~rY~~ 172 (218)
T PF04231_consen 153 DEVKGDIAR-AYFYMATRYEG 172 (218)
T ss_dssp HHHHHHHHH-HHHHHHHHC-T
T ss_pred hhhhHHHHH-HHHHHHHHHcC
Confidence 345566554 45555666754
No 16
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=22.78 E-value=56 Score=12.47 Aligned_cols=6 Identities=50% Similarity=1.332 Sum_probs=3.6
Q ss_pred CCCCCC
Q psy11109 80 GFDWGE 85 (93)
Q Consensus 80 ~~~WG~ 85 (93)
+.+|||
T Consensus 3 gG~Wgq 8 (8)
T PF03991_consen 3 GGGWGQ 8 (8)
T ss_pred CCcCCC
Confidence 456775
No 17
>CHL00186 psaI photosystem I subunit VIII; Validated
Probab=22.52 E-value=40 Score=18.69 Aligned_cols=12 Identities=42% Similarity=0.606 Sum_probs=8.5
Q ss_pred CCCcchHHHHHH
Q psy11109 1 MNAPYLPWVLLG 12 (93)
Q Consensus 1 i~a~yLPwvll~ 12 (93)
+.|.|||++++=
T Consensus 1 m~as~LPsI~VP 12 (36)
T CHL00186 1 MTASNLPSILVP 12 (36)
T ss_pred CccccCchhHHh
Confidence 357788888763
No 18
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=21.06 E-value=1.2e+02 Score=23.36 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=28.3
Q ss_pred CCcchHHHHHHHHHHh--cCc-hhhhhHHhhhhhhhhhhhhh
Q psy11109 2 NAPYLPWVLLGVSILL--GNP-IWVDLLGIAVGHMYYFIEDV 40 (93)
Q Consensus 2 ~a~yLPwvll~~~~l~--~~~-~~~dl~Gi~vGHiyyFl~~v 40 (93)
|-.++||.+++|-+.. +-+ +...++|++++-+|++.+..
T Consensus 202 ~k~~~~ff~lGF~laayl~l~~l~iAiig~~~A~i~~~~~~~ 243 (265)
T TIGR00822 202 KAYLMPFFYLGFLFAAYTDFSLLAFGAVGGAGALLYIQLNPK 243 (265)
T ss_pred hcchHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhccc
Confidence 4579999999887655 334 34578999999988765543
No 19
>cd06461 M2_ACE Peptidase family M2 Angiotensin converting enzyme (ACE, EC 3.4.15.1) is a membrane-bound, zinc dependent dipeptidase that catalyzes the conversion of the decapeptide angiotensin I to the potent vasopressor ocatapeptide angiotensin II, by removing two C-terminal amino acids. There are two forms of the enzyme in humans, the ubiquitous somatic ACE and the sperm-specific germinal ACE, both encoded by the same gene through transcription from alternative promoters. Somatic ACE has two tandem active sites with distinct catalytic properties, whereas germinal ACE, the function of which is largely unknown, has just a single active site. Recently, an ACE homolog, ACE2, has been identified in humans that differs from ACE; it preferentially removes carboxy-terminal hydrophobic or basic amino acids and appears to be important in cardiac function. ACE homologs (also known as members of the M2 gluzincin family) have been found in a wide variety of species, including those that neither h
Probab=20.59 E-value=62 Score=26.87 Aligned_cols=31 Identities=29% Similarity=0.559 Sum_probs=19.4
Q ss_pred hhhhhhhhhh-hhccCCCC-C--ccc-----------ccChHHHHH
Q psy11109 29 AVGHMYYFIE-DVFPNLRG-G--FRL-----------LQTPRILKV 59 (93)
Q Consensus 29 ~vGHiyyFl~-~v~P~~~g-g--~~~-----------l~TP~fl~~ 59 (93)
=.||++||+. .-.|.... | ... ..||++|++
T Consensus 254 E~GH~~yy~~y~~~p~~~r~~anp~fheav~e~~smS~~tpe~L~~ 299 (477)
T cd06461 254 EMGHIQYYLQYKDQPVLFREGANPGFHEAVGDAIALSVSTPKHLHK 299 (477)
T ss_pred HHHHHHHHHHhccCCHHHhCCCCCChHHHHHHHHHHhcCCHHHHhh
Confidence 4899999976 44553322 1 211 269999985
Done!