Query psy11109
Match_columns 93
No_of_seqs 105 out of 347
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 18:10:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11109.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11109hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1emz_A Envelope glycoprotein E 27.7 24 0.00082 17.5 1.0 14 26-39 4-17 (26)
2 2pu3_A Endonuclease I; cold ad 25.6 7.1 0.00024 28.2 -1.7 8 85-92 200-207 (211)
3 1jb0_I Photosystem 1 reaction 25.4 33 0.0011 18.4 1.4 11 2-12 6-16 (38)
4 2jpk_A Bacteriocin lactococcin 23.8 48 0.0017 17.3 1.8 17 2-18 2-18 (35)
5 4g92_C HAPE; transcription fac 13.7 54 0.0018 21.1 0.7 20 24-43 99-119 (119)
6 2htg_A NHE-1, NHE1 isoform of 8.8 1E+02 0.0034 15.3 0.6 18 13-30 7-24 (28)
7 1n1j_B NF-YC; histone-like PAI 8.6 1.1E+02 0.0037 18.7 0.8 11 33-43 87-97 (97)
8 3u5c_K 40S ribosomal protein S 6.9 51 0.0018 21.3 -1.4 9 31-39 62-70 (105)
9 1osy_A Immunomodulatory protei 6.5 53 0.0018 21.3 -1.5 11 82-92 24-34 (115)
10 1v54_G Cytochrome C oxidase po 6.1 2.7E+02 0.0092 17.0 1.7 14 78-91 57-70 (85)
No 1
>1emz_A Envelope glycoprotein E1; peptide, transmembrane domain, envelope protein E1, hepatitis C virus, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=27.70 E-value=24 Score=17.49 Aligned_cols=14 Identities=21% Similarity=0.534 Sum_probs=10.8
Q ss_pred HHhhhhhhhhhhhh
Q psy11109 26 LGIAVGHMYYFIED 39 (93)
Q Consensus 26 ~Gi~vGHiyyFl~~ 39 (93)
-|+++||.||...-
T Consensus 4 wGvl~glayfsm~g 17 (26)
T 1emz_A 4 WGVLAGIAYFSMVG 17 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHhh
Confidence 48899999987543
No 2
>2pu3_A Endonuclease I; cold adaptation, salt adaptation, psychrophilic enzymes, END I, hydrolase; 1.50A {Vibrio salmonicida} PDB: 1ouo_A 1oup_A 2ivk_A 2vnd_A 2g7e_A 2g7f_A
Probab=25.65 E-value=7.1 Score=28.21 Aligned_cols=8 Identities=25% Similarity=0.613 Sum_probs=6.9
Q ss_pred CCCCCCCC
Q psy11109 85 ERPNNPFI 92 (93)
Q Consensus 85 ~g~~~~~~ 92 (93)
||+|||||
T Consensus 200 QGNrNPFI 207 (211)
T 2pu3_A 200 QGNHNQFV 207 (211)
T ss_dssp HSCCCHHH
T ss_pred hCCCCccc
Confidence 78999987
No 3
>1jb0_I Photosystem 1 reaction centre subunit VIII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.17.1 PDB: 3pcq_I*
Probab=25.36 E-value=33 Score=18.44 Aligned_cols=11 Identities=36% Similarity=1.201 Sum_probs=8.5
Q ss_pred CCcchHHHHHH
Q psy11109 2 NAPYLPWVLLG 12 (93)
Q Consensus 2 ~a~yLPwvll~ 12 (93)
.|.|||++++=
T Consensus 6 aa~~LPsI~VP 16 (38)
T 1jb0_I 6 AASFLPWIFIP 16 (38)
T ss_dssp TTTTHHHHHHH
T ss_pred hhhhCChhhHh
Confidence 46789998873
No 4
>2jpk_A Bacteriocin lactococcin-G subunit beta; peptide, antimicrobial, membrane bound, antimicrobial protein; NMR {Lactococcus lactis} PDB: 2jpm_A
Probab=23.80 E-value=48 Score=17.31 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=14.1
Q ss_pred CCcchHHHHHHHHHHhc
Q psy11109 2 NAPYLPWVLLGVSILLG 18 (93)
Q Consensus 2 ~a~yLPwvll~~~~l~~ 18 (93)
+..+|||+--+.+++.|
T Consensus 2 ~~~wl~w~~pay~fi~g 18 (35)
T 2jpk_A 2 KWGWLAWVDPAYEFIKG 18 (35)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CcccccccchHHHHHHH
Confidence 45689999999999876
No 5
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=13.66 E-value=54 Score=21.08 Aligned_cols=20 Identities=25% Similarity=0.544 Sum_probs=12.3
Q ss_pred hhHHhhhh-hhhhhhhhhccC
Q psy11109 24 DLLGIAVG-HMYYFIEDVFPN 43 (93)
Q Consensus 24 dl~Gi~vG-HiyyFl~~v~P~ 43 (93)
||.-.+.- --|.||.|+.|+
T Consensus 99 di~~Av~~~e~~dFL~DiVPk 119 (119)
T 4g92_C 99 DIAAALSKSDMFDFLIDIVPR 119 (119)
T ss_dssp HHHHHHTTCGGGGGGTTTCC-
T ss_pred HHHHHHhcCchhhHHHHhCCC
Confidence 44444333 247899999985
No 6
>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic}
Probab=8.85 E-value=1e+02 Score=15.31 Aligned_cols=18 Identities=11% Similarity=0.368 Sum_probs=13.5
Q ss_pred HHHHhcCchhhhhHHhhh
Q psy11109 13 VSILLGNPIWVDLLGIAV 30 (93)
Q Consensus 13 ~~~l~~~~~~~dl~Gi~v 30 (93)
+.++.|-|..+|-+.|+.
T Consensus 7 ~~lvfGESllNDavaiVl 24 (28)
T 2htg_A 7 HILVFGESLLNDAVTVVL 24 (28)
T ss_dssp HHHHTTTTTTTTTTTTTT
T ss_pred EEEEEeeeeecccEEEEE
Confidence 567778888888877764
No 7
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=8.60 E-value=1.1e+02 Score=18.74 Aligned_cols=11 Identities=27% Similarity=0.733 Sum_probs=9.0
Q ss_pred hhhhhhhhccC
Q psy11109 33 MYYFIEDVFPN 43 (93)
Q Consensus 33 iyyFl~~v~P~ 43 (93)
-|.||.|+.|+
T Consensus 87 ~~~FL~divP~ 97 (97)
T 1n1j_B 87 QFDFLIDIVPR 97 (97)
T ss_dssp GGGGGTTTSCC
T ss_pred HHHHHHhhCCC
Confidence 68889998884
No 8
>3u5c_K 40S ribosomal protein S10-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_K
Probab=6.94 E-value=51 Score=21.34 Aligned_cols=9 Identities=22% Similarity=0.571 Sum_probs=7.0
Q ss_pred hhhhhhhhh
Q psy11109 31 GHMYYFIED 39 (93)
Q Consensus 31 GHiyyFl~~ 39 (93)
-|.||+|++
T Consensus 62 rh~Yw~LTn 70 (105)
T 3u5c_K 62 QYYYYTLTE 70 (105)
T ss_dssp TCCEEEECH
T ss_pred eEEEEEEch
Confidence 588888875
No 9
>1osy_A Immunomodulatory protein FIP-FVE; fungal protein, fibronectin fold, hemagglutination, lectin, sugar binding protein, immune system; 1.70A {Flammulina velutipes} SCOP: b.1.21.1
Probab=6.49 E-value=53 Score=21.32 Aligned_cols=11 Identities=27% Similarity=0.969 Sum_probs=7.3
Q ss_pred CCCCCCCCCCC
Q psy11109 82 DWGERPNNPFI 92 (93)
Q Consensus 82 ~WG~g~~~~~~ 92 (93)
|||+|.-+-||
T Consensus 24 nWGRG~P~s~i 34 (115)
T 1osy_A 24 NWGRGTPSSYI 34 (115)
T ss_dssp EEEECSSTTEE
T ss_pred CcCCCCccccc
Confidence 67777766554
No 10
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=6.10 E-value=2.7e+02 Score=17.04 Aligned_cols=14 Identities=29% Similarity=0.748 Sum_probs=10.8
Q ss_pred CCCCCCCCCCCCCC
Q psy11109 78 PGGFDWGERPNNPF 91 (93)
Q Consensus 78 ~g~~~WG~g~~~~~ 91 (93)
.-.|-||.|.+.-|
T Consensus 57 ~K~FPWGdGd~tLF 70 (85)
T 1v54_G 57 TKPFSWGDGNHTFF 70 (85)
T ss_dssp SSCCSSTTSSSCTT
T ss_pred cCCCCCCCCCcCcc
Confidence 34799999987655
Done!