Query psy11109
Match_columns 93
No_of_seqs 105 out of 347
Neff 5.5
Searched_HMMs 13730
Date Fri Aug 16 18:10:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11109.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11109hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0i_ f.23.17.1 (I:) Subunit 78.2 0.4 2.9E-05 24.7 1.2 12 2-13 6-17 (38)
2 d2byka1 a.22.1.3 (A:29-100) Ch 23.6 11 0.00082 20.8 0.7 11 33-43 60-70 (72)
3 d1n1jb_ a.22.1.3 (B:) Nuclear 23.5 12 0.00086 20.7 0.8 21 23-43 57-78 (78)
4 d1q90r_ f.23.12.1 (R:) ISP sub 20.6 23 0.0016 17.9 1.4 25 13-37 13-37 (39)
5 d1ouoa_ d.4.1.6 (A:) Periplasm 18.9 5.5 0.0004 26.9 -1.7 8 85-92 199-206 (210)
6 d2e74d2 f.23.12.1 (D:12-45) IS 10.7 76 0.0055 15.2 1.8 20 23-42 14-33 (34)
7 d1v54g_ f.23.2.1 (G:) Mitochon 9.2 74 0.0054 18.2 1.7 14 78-91 57-70 (84)
8 d3b45a1 f.51.1.1 (A:91-270) Gl 6.9 99 0.0072 18.5 1.6 19 22-40 162-180 (180)
9 d1k9vf_ c.23.16.1 (F:) GAT sub 6.8 33 0.0024 21.1 -0.8 13 24-36 79-91 (200)
10 d1t56a1 a.4.1.9 (A:22-94) Ethr 6.2 59 0.0043 16.7 0.2 17 23-39 30-46 (73)
No 1
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=78.16 E-value=0.4 Score=24.73 Aligned_cols=12 Identities=42% Similarity=1.196 Sum_probs=9.5
Q ss_pred CCcchHHHHHHH
Q psy11109 2 NAPYLPWVLLGV 13 (93)
Q Consensus 2 ~a~yLPwvll~~ 13 (93)
-|.||||+++-+
T Consensus 6 AAsyLPwI~iPv 17 (38)
T d1jb0i_ 6 AASFLPWIFIPV 17 (38)
T ss_dssp TTTTHHHHHHHH
T ss_pred HHHhcchhHHHH
Confidence 478999998743
No 2
>d2byka1 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=23.62 E-value=11 Score=20.85 Aligned_cols=11 Identities=18% Similarity=0.440 Sum_probs=9.8
Q ss_pred hhhhhhhhccC
Q psy11109 33 MYYFIEDVFPN 43 (93)
Q Consensus 33 iyyFl~~v~P~ 43 (93)
-|.||.|+.|+
T Consensus 60 ~f~FL~divP~ 70 (72)
T d2byka1 60 NLEFLLQIVPQ 70 (72)
T ss_dssp TTGGGTTTSCS
T ss_pred hhhHHHHhccC
Confidence 58999999996
No 3
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.55 E-value=12 Score=20.66 Aligned_cols=21 Identities=19% Similarity=0.350 Sum_probs=15.0
Q ss_pred hhhHHhhhhh-hhhhhhhhccC
Q psy11109 23 VDLLGIAVGH-MYYFIEDVFPN 43 (93)
Q Consensus 23 ~dl~Gi~vGH-iyyFl~~v~P~ 43 (93)
.|+.=.+... -|.||.|+.|+
T Consensus 57 ~dl~~av~~~~~~~FL~d~vPk 78 (78)
T d1n1jb_ 57 NDIAMAITKFDQFDFLIDIVPR 78 (78)
T ss_dssp HHHHHHHTTCGGGGGGTTTSCC
T ss_pred HHHHHHHhcCChhHHHHHhCCC
Confidence 4665555554 48999999985
No 4
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=20.55 E-value=23 Score=17.91 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=15.8
Q ss_pred HHHHhcCchhhhhHHhhhhhhhhhh
Q psy11109 13 VSILLGNPIWVDLLGIAVGHMYYFI 37 (93)
Q Consensus 13 ~~~l~~~~~~~dl~Gi~vGHiyyFl 37 (93)
|++++=+++-.-..|++.+-++||.
T Consensus 13 MNLll~G~~~~~~~g~l~py~~fFv 37 (39)
T d1q90r_ 13 MNLILAGGAGLPITTLALGYGAFFV 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhccchhhhhhccceeEEec
Confidence 4555544444556778888877773
No 5
>d1ouoa_ d.4.1.6 (A:) Periplasmic endonuclease Vvn {Vibrio vulnificus [TaxId: 672]}
Probab=18.91 E-value=5.5 Score=26.89 Aligned_cols=8 Identities=38% Similarity=0.937 Sum_probs=6.2
Q ss_pred CCCCCCCC
Q psy11109 85 ERPNNPFI 92 (93)
Q Consensus 85 ~g~~~~~~ 92 (93)
||+|||||
T Consensus 199 QGNrNPFI 206 (210)
T d1ouoa_ 199 QGNHNPFV 206 (210)
T ss_dssp HSCCCHHH
T ss_pred hCCCCccc
Confidence 67888876
No 6
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=10.68 E-value=76 Score=15.15 Aligned_cols=20 Identities=25% Similarity=0.610 Sum_probs=15.5
Q ss_pred hhhHHhhhhhhhhhhhhhcc
Q psy11109 23 VDLLGIAVGHMYYFIEDVFP 42 (93)
Q Consensus 23 ~dl~Gi~vGHiyyFl~~v~P 42 (93)
..+.|.++|-+|=..+...|
T Consensus 14 gt~tg~alg~lypvvkyfip 33 (34)
T d2e74d2 14 GTVTGVALGALYPLVKYFIP 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHhhhhhHHhhcCC
Confidence 45689999999987776665
No 7
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.24 E-value=74 Score=18.18 Aligned_cols=14 Identities=29% Similarity=0.748 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCCC
Q psy11109 78 PGGFDWGERPNNPF 91 (93)
Q Consensus 78 ~g~~~WG~g~~~~~ 91 (93)
.-.|-||+|.+.-|
T Consensus 57 ~K~FpWGDG~~tLF 70 (84)
T d1v54g_ 57 TKPFSWGDGNHTFF 70 (84)
T ss_dssp SSCCSSTTSSSCTT
T ss_pred ccccCCCCCCcccc
Confidence 34799999998765
No 8
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
Probab=6.86 E-value=99 Score=18.53 Aligned_cols=19 Identities=26% Similarity=0.527 Sum_probs=15.7
Q ss_pred hhhhHHhhhhhhhhhhhhh
Q psy11109 22 WVDLLGIAVGHMYYFIEDV 40 (93)
Q Consensus 22 ~~dl~Gi~vGHiyyFl~~v 40 (93)
...+.|+++|-++-|+.++
T Consensus 162 ~aHlgG~l~G~~~~~~~~~ 180 (180)
T d3b45a1 162 GAHIAGLAVGLAMAFVDSL 180 (180)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHC
Confidence 4569999999999988764
No 9
>d1k9vf_ c.23.16.1 (F:) GAT subunit, HisH, (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}
Probab=6.76 E-value=33 Score=21.10 Aligned_cols=13 Identities=23% Similarity=0.618 Sum_probs=9.7
Q ss_pred hhHHhhhhhhhhh
Q psy11109 24 DLLGIAVGHMYYF 36 (93)
Q Consensus 24 dl~Gi~vGHiyyF 36 (93)
-++|||+||-.-+
T Consensus 79 PiLGIClG~QlL~ 91 (200)
T d1k9vf_ 79 YVVGVCLGMQLLF 91 (200)
T ss_dssp EEEEETHHHHTTE
T ss_pred eEEEEecceeEEe
Confidence 3699999995443
No 10
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=6.18 E-value=59 Score=16.68 Aligned_cols=17 Identities=18% Similarity=0.460 Sum_probs=13.9
Q ss_pred hhhHHhhhhhhhhhhhh
Q psy11109 23 VDLLGIAVGHMYYFIED 39 (93)
Q Consensus 23 ~dl~Gi~vGHiyyFl~~ 39 (93)
..-+|+-.|-+|+++.+
T Consensus 30 a~~agvs~~t~Y~~F~~ 46 (73)
T d1t56a1 30 AKGAGISRPTFYFYFPS 46 (73)
T ss_dssp HHHHTCCHHHHHHHCSS
T ss_pred HHHhCCCHHHHHHHCcC
Confidence 44589999999999764
Done!