RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11109
         (93 letters)



>d1in4a1 a.4.5.11 (A:255-329) Holliday junction helicase RuvB
          {Thermotoga maritima [TaxId: 2336]}
          Length = 75

 Score = 25.8 bits (57), Expect = 0.40
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 18 GNPIWVDLLGIAVGHMYYFIEDVF-PNL-RGGFRLLQTPR 55
          G P+ ++ L  ++G     + +V+ P L + GF L +TPR
Sbjct: 20 GGPVGLNALAASLGVEADTLSEVYEPYLLQAGF-LARTPR 58


>d2uuia1 f.56.1.1 (A:2-147) Leukotriene C4 synthase {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 146

 Score = 25.1 bits (55), Expect = 1.2
 Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 2/35 (5%)

Query: 5  YLPWVLLGVSILLGNPIWVDLLGIA--VGHMYYFI 37
           L    L V+ +  +     L G+      + YF 
Sbjct: 60 PLFLATLWVAGIFFHEGAAALCGLVYLFARLRYFQ 94


>d2etva1 c.92.2.4 (A:25-358) Putative iron(III) transporter TM0189
           {Thermotoga maritima [TaxId: 2336]}
          Length = 334

 Score = 23.7 bits (50), Expect = 4.7
 Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 3/52 (5%)

Query: 15  ILLGNPIWVDLLGIAVGHMYYFIEDVFPNLRGGFRLLQTPRILKVLFDPHPE 66
                  +  L  +  G +Y  +   +     G  L     I KVL   +PE
Sbjct: 237 YSKHREFYESLSAVKRGKVYGILPYNYYTTNIGTALADAYFIGKVL---YPE 285


>d2q7ra1 f.56.1.1 (A:1-139) Arachidonate 5-lipoxygenase-activating
          protein, FLAP {Human (Homo sapiens) [TaxId: 9606]}
          Length = 139

 Score = 23.3 bits (50), Expect = 4.8
 Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 2/32 (6%)

Query: 8  WVLLGVSILLGNPIWVDLLGIA--VGHMYYFI 37
            +L  + LL + +     G+        YF+
Sbjct: 68 LAVLWSAGLLCSQVPAAFAGLMYLFVRQKYFV 99


>d1ixsb1 a.4.5.11 (B:243-318) Holliday junction helicase RuvB
          {Thermus thermophilus [TaxId: 274]}
          Length = 76

 Score = 22.7 bits (49), Expect = 5.2
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 18 GNPIWVDLLGIAVGHMYYFIEDVF-PNL-RGGFRLLQTPR 55
          G P+ +  L  A+      +E+V  P L R G  L +TPR
Sbjct: 20 GGPVGLATLATALSEDPGTLEEVHEPYLIRQGL-LKRTPR 58


>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 109

 Score = 22.8 bits (48), Expect = 7.0
 Identities = 7/37 (18%), Positives = 14/37 (37%)

Query: 55  RILKVLFDPHPEDPDYSPLPEDRPGGFDWGERPNNPF 91
           + +++    H          ED+    D+G  P + F
Sbjct: 68  KPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRF 104


>d1j8ua_ d.178.1.1 (A:) Phenylalanine hydroxylase, PAH {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 307

 Score = 22.8 bits (49), Expect = 9.8
 Identities = 5/16 (31%), Positives = 8/16 (50%)

Query: 61  FDPHPEDPDYSPLPED 76
           +  H   P Y+P P+ 
Sbjct: 151 YIRHGSKPMYTPEPDI 166


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.152    0.522 

Gapped
Lambda     K      H
   0.267   0.0649    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 439,637
Number of extensions: 20312
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 11
Length of query: 93
Length of database: 2,407,596
Length adjustment: 56
Effective length of query: 37
Effective length of database: 1,638,716
Effective search space: 60632492
Effective search space used: 60632492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)