RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy11111
         (84 letters)



>gnl|CDD|217436 pfam03226, Yippee, Yippee putative zinc-binding protein. 
          Length = 109

 Score = 53.4 bits (129), Expect = 7e-11
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 48 MVKTFQAYLPNCHRTYSCVHCRAHLASHDELISK 81
          M + F  YL    R YSC HC+ HLA H ++ISK
Sbjct: 1  MGRLFVVYLTGG-RIYSCKHCKTHLALHSDIISK 33


>gnl|CDD|152475 pfam12040, DUF3526, Domain of unknown function (DUF3526).  This
           presumed domain is functionally uncharacterized. This
           domain is found in bacteria. This domain is typically
           between 149 to 170 amino acids in length. This domain
           has a single completely conserved residue P that may be
           functionally important.
          Length = 158

 Score = 27.0 bits (60), Expect = 1.0
 Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 1/27 (3%)

Query: 31  YASLLSPYGGTQQLSNIMVKT-FQAYL 56
              LLSP    Q+ S  +  T   A+ 
Sbjct: 84  RFGLLSPTLALQRASMALAGTDLAAHR 110


>gnl|CDD|133011 cd02518, GT2_SpsF, SpsF is a glycosyltrnasferase implicated in the
           synthesis of the spore coat.  Spore coat polysaccharide
           biosynthesis protein F (spsF) is a glycosyltransferase
           implicated in the synthesis of the spore coat in a
           variety of bacteria challenged by stress as starvation.
           The spsF gene is expressed in the late stage of coat
           development responsible for a terminal step in coat
           formation that involves the glycosylation of the coat.
           SpsF gene mutation resulted in spores that appeared
           normal. But, the spores tended to aggregate and had
           abnormal adsorption properties, indicating a surface
           alteration.
          Length = 233

 Score = 26.0 bits (58), Expect = 2.1
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 12  WTVDTPQDY 20
            TVDTP+D+
Sbjct: 187 LTVDTPEDF 195


>gnl|CDD|153059 cd03589, CLECT_CEL-1_like, C-type lectin-like domain (CTLD) of
          the type found in CEL-1 from Cucumaria echinata and
          Echinoidin from Anthocidaris crassispina.
          CLECT_CEL-1_like: C-type lectin-like domain (CTLD) of
          the type found in CEL-1 from Cucumaria echinata and
          Echinoidin from Anthocidaris crassispina.  CTLD refers
          to a domain homologous to the carbohydrate-recognition
          domains (CRDs) of the C-type lectins.  The CEL-1 CTLD
          binds three calcium ions and has a high specificity for
          N-acteylgalactosamine (GalNAc).  CEL-1 exhibits strong
          cytotoxicity which is inhibited by GalNAc.  This
          protein may play a role as a toxin defending against
          predation.  Echinoidin is found in the coelomic fluid
          of the sea urchin and is specific for GalBeta1-3GalNAc.
           Echinoidin has a cell adhesive activity towards human
          cancer cells which is not mediated through the CTLD.
          Both CEL-1 and Echinoidin are multimeric proteins
          comprised of multiple dimers linked by disulfide bonds.
          Length = 137

 Score = 25.0 bits (55), Expect = 4.6
 Identities = 7/18 (38%), Positives = 10/18 (55%), Gaps = 1/18 (5%)

Query: 61 RTYSCVHCRAHLAS-HDE 77
          R++S     AHL S H +
Sbjct: 30 RSFSIPGLIAHLVSIHSQ 47


>gnl|CDD|213789 TIGR03280, methan_mark_11, methanogenesis imperfect marker protein
           11.  The first twenty-nine completed genomes with a
           member of this protein family include twenty-eight
           archaeal methanogens and one other related archaeon,
           Ferroglobus placidus DSM 10642. The exact function is
           unknown, but the protein likely belongs to a system
           usually tightly linked to methanogenesis.
          Length = 292

 Score = 25.1 bits (55), Expect = 5.0
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 51  TFQAYLPNCHRTYSCVHCRAHLASHDELISKIPR 84
           T Q Y  N ++T +CV      A + E   K+ R
Sbjct: 174 TVQLYPGNPNKTQNCVSVVLEFAVYPEYKEKLAR 207


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.131    0.431 

Gapped
Lambda     K      H
   0.267   0.0699    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,975,245
Number of extensions: 279477
Number of successful extensions: 215
Number of sequences better than 10.0: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 8
Length of query: 84
Length of database: 10,937,602
Length adjustment: 52
Effective length of query: 32
Effective length of database: 8,631,194
Effective search space: 276198208
Effective search space used: 276198208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.3 bits)