RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11111
         (84 letters)



>d1o1xa_ c.121.1.1 (A:) Putative sugar-phosphate isomerase
           {Thermotoga maritima [TaxId: 2336]}
          Length = 145

 Score = 24.5 bits (53), Expect = 1.5
 Identities = 9/73 (12%), Positives = 18/73 (24%), Gaps = 5/73 (6%)

Query: 8   VDSVWTVDTPQDYCWRHSSIGTAYAS-----LLSPYGGTQQLSNIMVKTFQAYLPNCHRT 62
            D     +   DY      +  +  S      +   G    +S    +        C   
Sbjct: 32  EDHGTYSEESVDYPDYAKKVVQSILSNEADFGILLCGTGLGMSIAANRYRGIRAALCLFP 91

Query: 63  YSCVHCRAHLASH 75
                 R+H  ++
Sbjct: 92  DMARLARSHNNAN 104


>d1twfj_ a.4.11.1 (J:) RNA polymerase subunit RPB10 {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 65

 Score = 23.0 bits (50), Expect = 3.3
 Identities = 6/15 (40%), Positives = 9/15 (60%)

Query: 68 CRAHLASHDELISKI 82
          CR  + +H +LI K 
Sbjct: 46 CRRMILTHVDLIEKF 60


>d1nn4a_ c.121.1.1 (A:) Alternate ribose 5-phosphate isomerase B,
           RpiB {Escherichia coli [TaxId: 562]}
          Length = 159

 Score = 23.4 bits (50), Expect = 4.4
 Identities = 13/74 (17%), Positives = 19/74 (25%), Gaps = 7/74 (9%)

Query: 8   VDSVWTVDTPQDYCW------RHSSIGTAYASLLSPYGGTQQLSNIMVKTFQAYLPNCHR 61
           +D         DY           + G     +L   G    +S    K        C  
Sbjct: 44  IDKGTWSSERTDYPHYASQVALAVAGGEVDGGILIC-GTGVGISIAANKFAGIRAVVCSE 102

Query: 62  TYSCVHCRAHLASH 75
            YS    R H  ++
Sbjct: 103 PYSAQLSRQHNDTN 116


>d2hmza_ a.24.4.1 (A:) Hemerythrin {Sipunculid worm (Themiste
          dyscritum) [TaxId: 6436]}
          Length = 113

 Score = 22.2 bits (47), Expect = 8.7
 Identities = 5/24 (20%), Positives = 9/24 (37%)

Query: 59 CHRTYSCVHCRAHLASHDELISKI 82
            +         H  +HD+ I K+
Sbjct: 61 LMQASQYAGYAEHKKAHDDFIHKL 84


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.131    0.431 

Gapped
Lambda     K      H
   0.267   0.0595    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 315,357
Number of extensions: 10942
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 8
Length of query: 84
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 35
Effective length of database: 1,734,826
Effective search space: 60718910
Effective search space used: 60718910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)