BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11112
(632 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IG5|A Chain A, Saccharomyces Cerevisiae Glutamate Cysteine Ligase In
Complex With Mg2+ And L-Glutamate
Length = 692
Score = 262 bits (669), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 161/361 (44%), Positives = 210/361 (58%), Gaps = 62/361 (17%)
Query: 36 PVYKDVNTPQP--FIEDLSQYGDQDKVSQQASLPDHVYLDAMGFGMGCCCLQVTFQACNI 93
P+YKD+ TP+ I D + +DK ++ AS P +Y+D+MGFGMGC CLQVTFQA NI
Sbjct: 217 PMYKDIATPETDDSIYDRDWFLPEDKEAKLASKPGFIYMDSMGFGMGCSCLQVTFQAPNI 276
Query: 94 SEAKTLYDQLTPLCPIMNGTYFIFHSELSVFYNSLRTERILYFIQNASPIFRGYLTDVDC 153
++A+ LYD L PIM L F A+P F+G+L D D
Sbjct: 277 NKARYLYDALVNFAPIM-----------------------LAF-SAAAPAFKGWLADQDV 312
Query: 154 RWNVISGSVDCRTREERGLEPL----RKNRF------------VIPKSRYDSIDSYL--S 195
RWNVISG+VD RT +ERG+ PL KN F IPKSRY S+D +L S
Sbjct: 313 RWNVISGAVDDRTPKERGVAPLLPKYNKNGFGGIAKDVQDKVLEIPKSRYSSVDLFLGGS 372
Query: 196 PEHGEKYNDVPLIYDRDIYNQLIQNGIDPM---LSQHIAHLFIRDTVSLFNEKVNQNDEI 252
YND + + + +L++N P+ L++H AHL+IRD VS F E +NQ+++
Sbjct: 373 KFFNRTYNDTNVPINEKVLGRLLENDKAPLDYDLAKHFAHLYIRDPVSTFEELLNQDNKT 432
Query: 253 DTDHFENIQSTNWQTMRFKPPPPNS------SIGWRVEFRPCETQLTDFENAAFVCFVVL 306
++HFENIQSTNWQT+RFKPP + S GWRVEFRP E QL DFENAA+ + L
Sbjct: 433 SSNHFENIQSTNWQTLRFKPPTQQATPDKKDSPGWRVEFRPFEVQLLDFENAAYSVLIYL 492
Query: 307 LTRIILSY--NLNFVIPISKVDENMKRAQKRDALNREKF-W---FRRDCAIKKTGGEDSS 360
+ IL++ N+N I +SKV ENMK A RDA+ EKF W FR D ++ ED S
Sbjct: 493 IVDSILTFSDNINAYIHMSKVWENMKIAHHRDAILFEKFHWKKSFRNDTDVET---EDYS 549
Query: 361 I 361
I
Sbjct: 550 I 550
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 409 IKQDGGEEYVEMTINEIINGKE-GVFPGLAP--LISRYLISMDVDTDTHCTIQQ----YL 461
+ D E + +I+EI + E G+FP L + ++ D H + + YL
Sbjct: 537 FRNDTDVETEDYSISEIFHNPENGIFPQFVTPILCQKGFVTKDWKELKHSSKHERLYYYL 596
Query: 462 KLIQNRASGEILTTASWIRSFVTSHPAYKQDSVVSEEITYDLL 504
KLI +RASGE+ TTA + R+FV HP YK DS +S+ I YDLL
Sbjct: 597 KLISDRASGELPTTAKFFRNFVLQHPDYKHDSKISKSINYDLL 639
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 517 YNDVPLIYDRDIYNQLIQNGIDPM---LSQHIAHLFIRDTVSLFNEKVNQNDEIDTDHFE 573
YND + + + +L++N P+ L++H AHL+IRD VS F E +NQ+++ ++HFE
Sbjct: 379 YNDTNVPINEKVLGRLLENDKAPLDYDLAKHFAHLYIRDPVSTFEELLNQDNKTSSNHFE 438
>pdb|3IG8|A Chain A, Saccharomyces Cerevisiae Glutamate Cysteine Ligase In
Complex With Mg2+, L-Glutamate And Adp
pdb|3LVV|A Chain A, Bso-Inhibited Scgcl
pdb|3LVW|A Chain A, Glutathione-Inhibited Scgcl
Length = 692
Score = 261 bits (668), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 161/361 (44%), Positives = 210/361 (58%), Gaps = 62/361 (17%)
Query: 36 PVYKDVNTPQP--FIEDLSQYGDQDKVSQQASLPDHVYLDAMGFGMGCCCLQVTFQACNI 93
P+YKD+ TP+ I D + +DK ++ AS P +Y+D+MGFGMGC CLQVTFQA NI
Sbjct: 217 PMYKDIATPETDDSIYDRDWFLPEDKEAKLASKPGFIYMDSMGFGMGCSCLQVTFQAPNI 276
Query: 94 SEAKTLYDQLTPLCPIMNGTYFIFHSELSVFYNSLRTERILYFIQNASPIFRGYLTDVDC 153
++A+ LYD L PIM L F A+P F+G+L D D
Sbjct: 277 NKARYLYDALVNFAPIM-----------------------LAF-SAAAPAFKGWLADQDV 312
Query: 154 RWNVISGSVDCRTREERGLEPL----RKNRF------------VIPKSRYDSIDSYL--S 195
RWNVISG+VD RT +ERG+ PL KN F IPKSRY S+D +L S
Sbjct: 313 RWNVISGAVDDRTPKERGVAPLLPKYNKNGFGGIAKDVQDKVLEIPKSRYSSVDLFLGGS 372
Query: 196 PEHGEKYNDVPLIYDRDIYNQLIQNGIDPM---LSQHIAHLFIRDTVSLFNEKVNQNDEI 252
YND + + + +L++N P+ L++H AHL+IRD VS F E +NQ+++
Sbjct: 373 KFFNRTYNDTNVPINEKVLGRLLENDKAPLDYDLAKHFAHLYIRDPVSTFEELLNQDNKT 432
Query: 253 DTDHFENIQSTNWQTMRFKPPPPNS------SIGWRVEFRPCETQLTDFENAAFVCFVVL 306
++HFENIQSTNWQT+RFKPP + S GWRVEFRP E QL DFENAA+ + L
Sbjct: 433 SSNHFENIQSTNWQTLRFKPPTQQATPDKKDSPGWRVEFRPFEVQLLDFENAAYSVLIYL 492
Query: 307 LTRIILSY--NLNFVIPISKVDENMKRAQKRDALNREKF-W---FRRDCAIKKTGGEDSS 360
+ IL++ N+N I +SKV ENMK A RDA+ EKF W FR D ++ ED S
Sbjct: 493 IVDSILTFSDNINAYIHMSKVWENMKIAHHRDAILFEKFHWKKSFRNDTDVET---EDYS 549
Query: 361 I 361
I
Sbjct: 550 I 550
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 7/103 (6%)
Query: 409 IKQDGGEEYVEMTINEIINGKE-GVFPGLAP--LISRYLISMDVDTDTHCTIQQ----YL 461
+ D E + +I+EI + E G+FP L + ++ D H + + YL
Sbjct: 537 FRNDTDVETEDYSISEIFHNPENGIFPQFVTPILCQKGFVTKDWKELKHSSKHERLYYYL 596
Query: 462 KLIQNRASGEILTTASWIRSFVTSHPAYKQDSVVSEEITYDLL 504
KLI +RASGE+ TTA + R+FV HP YK DS +S+ I YDLL
Sbjct: 597 KLISDRASGELPTTAKFFRNFVLQHPDYKHDSKISKSINYDLL 639
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 3/60 (5%)
Query: 517 YNDVPLIYDRDIYNQLIQNGIDPM---LSQHIAHLFIRDTVSLFNEKVNQNDEIDTDHFE 573
YND + + + +L++N P+ L++H AHL+IRD VS F E +NQ+++ ++HFE
Sbjct: 379 YNDTNVPINEKVLGRLLENDKAPLDYDLAKHFAHLYIRDPVSTFEELLNQDNKTSSNHFE 438
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 129 RTERILYFIQNASPIFRGYLTDVDC---RWNVISGSVDCRTREERGLEPLRKNRFVIPKS 185
R ER L F AS + D+D R + +SG+V +E GL +RKNR+VI +S
Sbjct: 346 RRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQS 405
>pdb|2DZN|B Chain B, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|D Chain D, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|F Chain F, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|B Chain B, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|D Chain D, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 82
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 131 ERILYFIQNASPIFRGYLTDVDC---RWNVISGSVDCRTREERGLEPLRKNRFVIPKS 185
ER L F AS + D+D R + +SG+V +E GL +RKNR+VI +S
Sbjct: 2 ERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQS 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,506,684
Number of Sequences: 62578
Number of extensions: 833341
Number of successful extensions: 1703
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1683
Number of HSP's gapped (non-prelim): 13
length of query: 632
length of database: 14,973,337
effective HSP length: 105
effective length of query: 527
effective length of database: 8,402,647
effective search space: 4428194969
effective search space used: 4428194969
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)