Query psy11112
Match_columns 632
No_of_seqs 153 out of 219
Neff 3.4
Searched_HMMs 46136
Date Fri Aug 16 18:14:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11112.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11112hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3754|consensus 100.0 3E-199 6E-204 1548.3 20.7 416 18-507 189-604 (640)
2 PF03074 GCS: Glutamate-cystei 100.0 7E-181 1E-185 1393.6 16.4 369 70-512 1-371 (371)
3 KOG3754|consensus 99.9 4.2E-23 9E-28 219.6 2.8 69 510-578 339-407 (640)
4 PF03074 GCS: Glutamate-cystei 99.8 1.1E-21 2.5E-26 205.6 1.2 69 512-580 106-174 (371)
5 PRK13517 carboxylate-amine lig 98.7 5.4E-08 1.2E-12 102.6 9.0 225 75-485 125-354 (373)
6 PRK13515 carboxylate-amine lig 98.2 1E-06 2.2E-11 92.9 5.3 160 76-334 120-284 (371)
7 TIGR02050 gshA_cyan_rel unchar 98.0 5.9E-06 1.3E-10 84.8 5.0 161 75-334 114-279 (287)
8 PRK13516 gamma-glutamyl:cystei 97.8 2.2E-05 4.8E-10 83.8 5.8 161 75-334 126-289 (373)
9 TIGR02048 gshA_cyano glutamate 97.1 0.00039 8.4E-09 74.7 4.2 52 74-149 107-158 (376)
10 PRK13518 carboxylate-amine lig 97.0 0.0014 3E-08 70.2 7.3 171 65-334 113-292 (357)
11 PF04107 GCS2: Glutamate-cyste 93.9 0.016 3.5E-07 59.3 0.0 60 75-158 116-177 (288)
12 PLN02611 glutamate--cysteine l 92.6 0.028 6.1E-07 62.7 -0.6 162 76-306 203-374 (482)
13 TIGR01436 glu_cys_lig_pln glut 91.3 0.039 8.5E-07 60.9 -1.3 51 75-149 159-211 (446)
14 COG2170 Uncharacterized conser 91.0 0.49 1.1E-05 51.5 6.5 48 78-149 120-167 (369)
15 TIGR03444 gshA_related glutama 74.0 0.7 1.5E-05 50.8 -1.3 59 84-166 152-212 (390)
16 PF10929 DUF2811: Protein of u 27.4 24 0.00052 29.8 0.4 28 476-503 11-38 (57)
17 PF10413 Rhodopsin_N: Amino te 26.5 27 0.00059 27.1 0.5 10 315-324 5-14 (36)
18 PF02341 RcbX: RbcX protein; 21.4 75 0.0016 29.9 2.5 42 450-493 7-53 (111)
No 1
>KOG3754|consensus
Probab=100.00 E-value=2.9e-199 Score=1548.34 Aligned_cols=416 Identities=64% Similarity=1.049 Sum_probs=391.1
Q ss_pred HHHHHHhhcCCCceeEecCccccCCCCCCCcccCccCCCCchhhccCCCCCeeeeccccccccccccccccccCChhhHh
Q psy11112 18 TLWLTVLLISPVNNVILFPVYKDVNTPQPFIEDLSQYGDQDKVSQQASLPDHVYLDAMGFGMGCCCLQVTFQACNISEAK 97 (632)
Q Consensus 18 ~~~~~~~~~~~~KV~InvPifkD~nTp~Pf~e~~~~~~~~d~e~~~aa~pdhIYMDAMGFGMGccCLQvTfQA~nI~EAR 97 (632)
||---+--|||+||+||||||||+|||+||++++..+. +.|.+.|++|||||||||||||||||||||||||||+|||
T Consensus 189 tLT~nIr~RRGeKV~invpifkD~nTp~pf~e~~~~~~--~ped~~a~~pdhIymDsMGFGMGccCLQvTFQA~ni~eAR 266 (640)
T KOG3754|consen 189 TLTANIRTRRGEKVAINVPIFKDTNTPSPFDEIYRDWF--LPEDARAKKPDHIYMDSMGFGMGCCCLQVTFQACNIDEAR 266 (640)
T ss_pred hhhhhhhhccCceeEEecceeccCCCCCCccchhhhcc--CccccccCCCCeEEEcccccCccceeeEeeeeccCchHHH
Confidence 34445567899999999999999999999999874432 3466778899999999999999999999999999999999
Q ss_pred hhhhhcCCccchhcccccccccchhhhhcccchhhhhccccccccccceeecccccccccccccccCCcccccccccCCC
Q psy11112 98 TLYDQLTPLCPIMNGTYFIFHSELSVFYNSLRTERILYFIQNASPIFRGYLTDVDCRWNVISGSVDCRTREERGLEPLRK 177 (632)
Q Consensus 98 ~LYDQL~pl~PImLA~~~~~~~~~~~~~~~~~~~~~~~~LSAAsPi~rG~LaD~D~RWnVIS~SVDdRT~eErg~~pL~~ 177 (632)
||||||+|+|||||| ||||||+|||||+|+||||||||+||||||+||||++||++
T Consensus 267 ~LYDqL~pi~PimlA------------------------lSAatP~frGylad~DcRWnVIs~sVDdRT~eErgl~PL~~ 322 (640)
T KOG3754|consen 267 YLYDQLTPITPIMLA------------------------LSAATPAFRGYLADQDCRWNVISGSVDDRTPEERGLAPLKN 322 (640)
T ss_pred HHHHhhccchHHHHH------------------------HhccChhhcccccccccccceeeccccCCChhhcCCccccc
Confidence 999999999999999 99999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCccccccCCCCCCCCCCCCCCCCHHHHHHHHHcCCChhhhhhhhhhhhccccchhccccccCCCCCcccc
Q psy11112 178 NRFVIPKSRYDSIDSYLSPEHGEKYNDVPLIYDRDIYNQLIQNGIDPMLSQHIAHLFIRDTVSLFNEKVNQNDEIDTDHF 257 (632)
Q Consensus 178 ~~~~IpKSRYdSid~Yis~~~~~~YNDi~~~~de~iy~~L~~~GiD~~LA~H~AHLFIRDPlviF~E~i~qdd~~~tDHF 257 (632)
++++||||||||||+|||++ +.+|||+|++|||++|++|+++|||++||+||||||||||+++|+|+|+|||.+++|||
T Consensus 323 ~~~~I~KSRYdSvD~yls~~-~~~YNDvpl~ide~vy~~Ll~~~iD~~LAkH~AHlfiRDp~~~F~e~i~qdd~~ss~HF 401 (640)
T KOG3754|consen 323 KKLRIPKSRYDSVDLYLSPC-KRKYNDVPLTIDEKVYGRLLEGGIDELLAKHVAHLFIRDPVSLFEEKIHQDDKTSSDHF 401 (640)
T ss_pred cceecccccccchheeecCC-CCccCCCCccccHHHHHHHHhcCccHHHHHHHHHHhhcChHHHHHHHHhcccccchhhh
Confidence 99999999999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcceecCCCCCCCCCceeeeeccCccCCchhhhHHHHHHHHHHHHHHhcCCceeeccchhhhhHHHHhhhcc
Q psy11112 258 ENIQSTNWQTMRFKPPPPNSSIGWRVEFRPCETQLTDFENAAFVCFVVLLTRIILSYNLNFVIPISKVDENMKRAQKRDA 337 (632)
Q Consensus 258 ENIQSTNWQtmRFKPPP~~s~iGWRVEFRpmEvQlTDFENAAf~vFivLLtRaILs~~LnfyIPISkVDENM~rAqkrdA 337 (632)
||||||||||||||||||+|+||||||||||||||||||||||+||||||||+||+|+||||||||||||||++||||||
T Consensus 402 EniqSTNWqtmRFKPPpp~s~iGWRVEFRp~EvQltDFENaAy~~fVvlltr~ilsf~ln~l~piSkVdENMk~Aq~rDA 481 (640)
T KOG3754|consen 402 ENIQSTNWQTMRFKPPPPNSSIGWRVEFRPMEVQLTDFENAAYSVFVVLLTRVILSFNLNFLIPISKVDENMKIAQKRDA 481 (640)
T ss_pred hhhcccccceeccCCcCCCCCCceeEEeeeeeEEeccccccceEEeehhhhHHHHhhhhheEeehhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCceeeeecccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCcccccCCCCCCCCCCCCCCCCcce
Q psy11112 338 LNREKFWFRRDCAIKKTGGEDSSIPGDSQQSRPPMDGTPETNPLYMNGNSVYSGSDEAKYNGATNNNNNENIKQDGGEEY 417 (632)
Q Consensus 338 v~~eKFwFRk~i~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 417 (632)
|+++||||||+.+ +. +..+++ | + .-+++...+|
T Consensus 482 il~~kF~frk~~c--kn---------------~~~n~~------------g---~---------------q~~~~~s~~~ 514 (640)
T KOG3754|consen 482 ILFEKFWFRKSEC--KN---------------AFRNGT------------G---S---------------QDCGDESEEF 514 (640)
T ss_pred HHhhhheeecccc--cc---------------cCCCCC------------c---c---------------cccCcchhhh
Confidence 9999999999976 11 111111 0 0 0023455789
Q ss_pred eeeehhhhhcCCCCCcccchHHHHHhhhccCCChhHHHHHHHHHHHHhhhhcCccchhHHHHHhhhccCCCCCCCCccch
Q psy11112 418 VEMTINEIINGKEGVFPGLAPLISRYLISMDVDTDTHCTIQQYLKLIQNRASGEILTTASWIRSFVTSHPAYKQDSVVSE 497 (632)
Q Consensus 418 ~emTi~EIinGk~~~FPGLiplv~~YL~s~~vd~~t~~~i~~YL~lI~~RAsGel~T~A~wiR~FV~~HPdYKqDSVVS~ 497 (632)
++|||+||||||+++||||||+|++||.++++|++|+|+|.+||+||+|||+|||+|+|+|||+||++||+||||||||+
T Consensus 515 ~~~SIdeifngk~n~FPgli~~irsyl~s~~vD~dt~c~i~~YlklIskRAsGel~T~A~w~R~fv~~HPdYKqDSvvsd 594 (640)
T KOG3754|consen 515 ELLSIDEIFNGKENGFPGLITLIRSYLGSMEVDVDTHCTIEQYLKLISKRASGELPTTAKWMRNFVLSHPDYKQDSVVSD 594 (640)
T ss_pred hhccHHHHhcCCCCCCCcchHHHHHHHhhcCcCcccceeHHHHHHHHHHhhcCccchHHHHHHHHHhcCCccccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhh
Q psy11112 498 EITYDLLLKS 507 (632)
Q Consensus 498 ~InYDLl~~~ 507 (632)
+||||||++|
T Consensus 595 ~inYdLl~~~ 604 (640)
T KOG3754|consen 595 EINYDLLKRC 604 (640)
T ss_pred hhhHHHHHHH
Confidence 9999999999
No 2
>PF03074 GCS: Glutamate-cysteine ligase; InterPro: IPR004308 This family represents the catalytic subunit of glutamate-cysteine ligase (6.3.2.2 from EC), also known as gamma-glutamylcysteine synthetase (GCS). This enzyme catalyses the rate limiting step in the biosynthesis of glutathione. The eukaryotic enzyme is a dimer of a heavy chain and a light chain with all the catalytic activity exhibited by the heavy chain.; GO: 0004357 glutamate-cysteine ligase activity, 0006750 glutathione biosynthetic process; PDB: 3LVW_A 3LVV_A 3IG8_A 3IG5_A.
Probab=100.00 E-value=6.7e-181 Score=1393.63 Aligned_cols=369 Identities=67% Similarity=1.158 Sum_probs=273.7
Q ss_pred eeeccccccccccccccccccCChhhHhhhhhhcCCccchhcccccccccchhhhhcccchhhhhccccccccccceeec
Q psy11112 70 VYLDAMGFGMGCCCLQVTFQACNISEAKTLYDQLTPLCPIMNGTYFIFHSELSVFYNSLRTERILYFIQNASPIFRGYLT 149 (632)
Q Consensus 70 IYMDAMGFGMGccCLQvTfQA~nI~EAR~LYDQL~pl~PImLA~~~~~~~~~~~~~~~~~~~~~~~~LSAAsPi~rG~La 149 (632)
|||||||||||||||||||||+||+|||+|||||+|+|||||| ||||||+|||||+
T Consensus 1 iymDamgFGMG~ccLQvTfqa~~i~eaR~lyDql~~~~Pi~La------------------------lsAasp~~~G~l~ 56 (371)
T PF03074_consen 1 IYMDAMGFGMGCCCLQVTFQACNIDEARYLYDQLAPLCPIMLA------------------------LSAASPIFKGYLA 56 (371)
T ss_dssp EEE-SGGGTTTS-BEEEEEEESSHHHHHHHHHHHTTHHHHHHH------------------------HC----EETTEEB
T ss_pred CcccccccccchhhhHHhHhccChHHHHHHHHhhcchhHHHHH------------------------HhhcChhhcceee
Confidence 8999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccccccccccccccCCcccccccccCCCCCccccCCCCCccccccCCC--CCCCCCCCCCCCCHHHHHHHHHcCCChhhh
Q psy11112 150 DVDCRWNVISGSVDCRTREERGLEPLRKNRFVIPKSRYDSIDSYLSPE--HGEKYNDVPLIYDRDIYNQLIQNGIDPMLS 227 (632)
Q Consensus 150 D~D~RWnVIS~SVDdRT~eErg~~pL~~~~~~IpKSRYdSid~Yis~~--~~~~YNDi~~~~de~iy~~L~~~GiD~~LA 227 (632)
|+||||+|||+||||||+||||++||++++++||||||+|||+|||++ +.++|||+++++|+++|++|+++|||+.||
T Consensus 57 d~D~RW~vis~svDdRt~~E~~~~p~~~~~~~i~ksRy~si~~yis~~~~~~~~ynD~~~~~~~~~~~~l~~~g~D~~la 136 (371)
T PF03074_consen 57 DVDVRWNVISGSVDDRTPEERGLEPLKKNKFRIPKSRYDSIDLYISNDPFNREEYNDINVPIDEDIYQRLLENGVDELLA 136 (371)
T ss_dssp SBS-SHHHHHHHT----CCCCTS--SGGG----SS-SBSS-------STT--GGG--S-----HHHHHHHHS-S--HHHH
T ss_pred ccccchHHHhhhhcCCCHHHcCCCcccccccccccCcCCchhhhhcCCccchHHhCCCCCCCCHHHHHHHHHcCCcHHHH
Confidence 999999999999999999999999999999999999999999999987 459999999999999999999999999999
Q ss_pred hhhhhhhhccccchhccccccCCCCCcccccccccCCCCcceecCCCCCCCCCceeeeeccCccCCchhhhHHHHHHHHH
Q psy11112 228 QHIAHLFIRDTVSLFNEKVNQNDEIDTDHFENIQSTNWQTMRFKPPPPNSSIGWRVEFRPCETQLTDFENAAFVCFVVLL 307 (632)
Q Consensus 228 ~H~AHLFIRDPlviF~E~i~qdd~~~tDHFENIQSTNWQtmRFKPPP~~s~iGWRVEFRpmEvQlTDFENAAf~vFivLL 307 (632)
+||||||||||||+|+|+|+|||++++||||||||||||||||||||++|+||||||||||||||||||||||++|+|||
T Consensus 137 ~h~ahlfirDPlvif~e~i~~dd~~~~dhFEniqStnWqt~RfKpPp~~s~iGWRVEfR~mEvQlTdfENAA~~~f~vLl 216 (371)
T PF03074_consen 137 RHFAHLFIRDPLVIFSERIEQDDETSTDHFENIQSTNWQTVRFKPPPPNSSIGWRVEFRPMEVQLTDFENAAYSVFIVLL 216 (371)
T ss_dssp HHHHHHTTS--S--BCGGGS--TTT--HHHHHHHTTSB-SEEEE--TT-TS--CEEEE---B--SSHHHHHHHHHHHHHH
T ss_pred HHHHHHcccCcHHHHHHHHHhccchhhhhHhhhcccCcccccccCCCCCCCCCeeEEeeccceecchHhHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCceeeccchhhhhHHHHhhhcccccCceeeeecccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCC
Q psy11112 308 TRIILSYNLNFVIPISKVDENMKRAQKRDALNREKFWFRRDCAIKKTGGEDSSIPGDSQQSRPPMDGTPETNPLYMNGNS 387 (632)
Q Consensus 308 tRaILs~~LnfyIPISkVDENM~rAqkrdAv~~eKFwFRk~i~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 387 (632)
|||||+|+||||||||||||||+||||||||++||||||++++ +. . + ++
T Consensus 217 ~r~il~~~lnfyiPiSkV~eNM~~A~~rdAv~~~kF~fr~~~~--~~------------~--~---~~------------ 265 (371)
T PF03074_consen 217 TRAILSFKLNFYIPISKVDENMKRAQKRDAVLNEKFWFRKDIC--NS------------E--N---GC------------ 265 (371)
T ss_dssp HHHHHHTTB-----HHHHHHHHHHTTBTTHHHH-EEEEES-S--------------------------------------
T ss_pred HHHHHhCCceEEecccHhHHHHHHHhhcchhhhCceeeccccc--cc------------c--c---cc------------
Confidence 9999999999999999999999999999999999999999986 21 0 0 00
Q ss_pred CCCCCCcccccCCCCCCCCCCCCCCCCcceeeeehhhhhcCCCCCcccchHHHHHhhhccCCChhHHHHHHHHHHHHhhh
Q psy11112 388 VYSGSDEAKYNGATNNNNNENIKQDGGEEYVEMTINEIINGKEGVFPGLAPLISRYLISMDVDTDTHCTIQQYLKLIQNR 467 (632)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~emTi~EIinGk~~~FPGLiplv~~YL~s~~vd~~t~~~i~~YL~lI~~R 467 (632)
+.+..+.++++++|||+||||||+|.||||||+|++||++++++++++|+|++||+||++|
T Consensus 266 -------------------~~~~~~~~~~~eemTI~EI~nGk~g~FpGLI~lv~~Yl~s~~~d~~tr~~l~~YL~LIskR 326 (371)
T PF03074_consen 266 -------------------SNCSDSSEDEYEEMTIDEIFNGKNGEFPGLIPLVRSYLESINVDVETRCRLYQYLKLISKR 326 (371)
T ss_dssp ----------------------CSTT---EEEEEHHHHHH-TT-HHHHTHH-SS-GGGGGG-STTHH--HHHHHHHHHHH
T ss_pred -------------------ccccCCCccccccccHHHhccCCCCCccchHhHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 0011234578999999999999999999999999999999999999999999999999999
Q ss_pred hcCccchhHHHHHhhhccCCCCCCCCccchhhhHHHHHhhhhhcC
Q psy11112 468 ASGEILTTASWIRSFVTSHPAYKQDSVVSEEITYDLLLKSHHIQT 512 (632)
Q Consensus 468 AsGel~T~A~wiR~FV~~HPdYKqDSVVS~~InYDLl~~~~~I~~ 512 (632)
|||||||+|+|||+||++||+||||||||++||||||++|++|+.
T Consensus 327 ASGel~T~A~WiR~FV~~HPdYK~DSvVS~~InYDLi~~~~~It~ 371 (371)
T PF03074_consen 327 ASGELPTTATWIRNFVLNHPDYKHDSVVSDEINYDLIKACDRITN 371 (371)
T ss_dssp HTTSS--HHHHHHHHHHC-TT--SSSB--HHHHHHHHHHHHHHHT
T ss_pred hCCccCcHHHHHHHHHhcCCCcccCCcccHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999863
No 3
>KOG3754|consensus
Probab=99.86 E-value=4.2e-23 Score=219.60 Aligned_cols=69 Identities=49% Similarity=0.901 Sum_probs=65.5
Q ss_pred hcCCCCCCCCCCcccchHHHHHHHHcCCchhhhhhhhhhhhccccchhhhccccCCCccCCccccCccc
Q psy11112 510 IQTGRTPYNDVPLIYDRDIYNQLIQNGIDPMLSQHIAHLFIRDTVSLFNEKVNQNDEIDTDHFEVPNSV 578 (632)
Q Consensus 510 I~~g~~~~ND~~lI~d~~~y~~L~~~gid~~la~H~aHlFirDplvifse~i~qd~~~~~dhFEn~~s~ 578 (632)
|+.-..+|||+|+.||++||+||+++|||++||+||||||||||+++|+|+|+|||.+++||||||||-
T Consensus 339 ls~~~~~YNDvpl~ide~vy~~Ll~~~iD~~LAkH~AHlfiRDp~~~F~e~i~qdd~~ss~HFEniqST 407 (640)
T KOG3754|consen 339 LSPCKRKYNDVPLTIDEKVYGRLLEGGIDELLAKHVAHLFIRDPVSLFEEKIHQDDKTSSDHFENIQST 407 (640)
T ss_pred ecCCCCccCCCCccccHHHHHHHHhcCccHHHHHHHHHHhhcChHHHHHHHHhcccccchhhhhhhccc
Confidence 344458999999999999999999999999999999999999999999999999999999999999995
No 4
>PF03074 GCS: Glutamate-cysteine ligase; InterPro: IPR004308 This family represents the catalytic subunit of glutamate-cysteine ligase (6.3.2.2 from EC), also known as gamma-glutamylcysteine synthetase (GCS). This enzyme catalyses the rate limiting step in the biosynthesis of glutathione. The eukaryotic enzyme is a dimer of a heavy chain and a light chain with all the catalytic activity exhibited by the heavy chain.; GO: 0004357 glutamate-cysteine ligase activity, 0006750 glutathione biosynthetic process; PDB: 3LVW_A 3LVV_A 3IG8_A 3IG5_A.
Probab=99.82 E-value=1.1e-21 Score=205.65 Aligned_cols=69 Identities=46% Similarity=0.820 Sum_probs=46.5
Q ss_pred CCCCCCCCCCcccchHHHHHHHHcCCchhhhhhhhhhhhccccchhhhccccCCCccCCccccCcccch
Q psy11112 512 TGRTPYNDVPLIYDRDIYNQLIQNGIDPMLSQHIAHLFIRDTVSLFNEKVNQNDEIDTDHFEVPNSVVS 580 (632)
Q Consensus 512 ~g~~~~ND~~lI~d~~~y~~L~~~gid~~la~H~aHlFirDplvifse~i~qd~~~~~dhFEn~~s~~~ 580 (632)
....+|||+++++|+++|++|+++|||++||+||||||||||||||+|+|+|||+.++||||||||-.=
T Consensus 106 ~~~~~ynD~~~~~~~~~~~~l~~~g~D~~la~h~ahlfirDPlvif~e~i~~dd~~~~dhFEniqStnW 174 (371)
T PF03074_consen 106 FNREEYNDINVPIDEDIYQRLLENGVDELLARHFAHLFIRDPLVIFSERIEQDDETSTDHFENIQSTNW 174 (371)
T ss_dssp T--GGG--S-----HHHHHHHHS-S--HHHHHHHHHHTTS--S--BCGGGS--TTT--HHHHHHHTTSB
T ss_pred cchHHhCCCCCCCCHHHHHHHHHcCCcHHHHHHHHHHcccCcHHHHHHHHHhccchhhhhHhhhcccCc
Confidence 355789999999999999999999999999999999999999999999999999999999999999753
No 5
>PRK13517 carboxylate-amine ligase; Provisional
Probab=98.68 E-value=5.4e-08 Score=102.62 Aligned_cols=225 Identities=18% Similarity=0.169 Sum_probs=149.6
Q ss_pred ccccccccccccccccCChhhHhhhhhhcCCccchhcccccccccchhhhhcccchhhhhccccccccccceeec-cccc
Q psy11112 75 MGFGMGCCCLQVTFQACNISEAKTLYDQLTPLCPIMNGTYFIFHSELSVFYNSLRTERILYFIQNASPIFRGYLT-DVDC 153 (632)
Q Consensus 75 MGFGMGccCLQvTfQA~nI~EAR~LYDQL~pl~PImLA~~~~~~~~~~~~~~~~~~~~~~~~LSAAsPi~rG~La-D~D~ 153 (632)
.|..|.+|.+||-++..+-+++-.++..|.++.|+++| |||+||++.|.-+ -..+
T Consensus 125 ~~~~~~~~g~hVhv~v~~~~~~i~~~n~l~~~lP~llA------------------------LsAnSPf~~G~dtg~~S~ 180 (373)
T PRK13517 125 WARQQLICGVHVHVGVPSREKVVPVINRLRPWLPHLLA------------------------LSANSPFWRGEDTGYASN 180 (373)
T ss_pred HHHhheeeeeEEEeCCCCHHHHHHHHHHHHHHHHHHHH------------------------HHhCCchhcCCCCcchhH
Confidence 45667899999999999999999999999999999999 9999999999866 3455
Q ss_pred ccccccccccCCcccccccccCCCCCccccCCCCCccccccCCCCCCCCCCCCCCCCHHHHHHHHHcCCChhhhhhhhhh
Q psy11112 154 RWNVISGSVDCRTREERGLEPLRKNRFVIPKSRYDSIDSYLSPEHGEKYNDVPLIYDRDIYNQLIQNGIDPMLSQHIAHL 233 (632)
Q Consensus 154 RWnVIS~SVDdRT~eErg~~pL~~~~~~IpKSRYdSid~Yis~~~~~~YNDi~~~~de~iy~~L~~~GiD~~LA~H~AHL 233 (632)
|+.+-.+. +. .|+ | -+|.|.+.|-. ..+.|++.|+
T Consensus 181 R~~~~~~~-p~-----~G~----------p-~~f~s~~~y~~-----------------~v~~l~~~g~----------- 215 (373)
T PRK13517 181 RAMLFQQL-PT-----AGP----------P-PQFGSWAEYEA-----------------YVADLLKTGV----------- 215 (373)
T ss_pred HHHHHHhC-CC-----CCC----------C-ccCCCHHHHHH-----------------HHHHHHHcCC-----------
Confidence 66555432 10 121 1 22444333321 2223333331
Q ss_pred hhccccchhccccccCCCCCcccccccccCCCCcceecCCCCCCCCCceeeeeccCccCCchhhhHHHHHHHHHHHHHHh
Q psy11112 234 FIRDTVSLFNEKVNQNDEIDTDHFENIQSTNWQTMRFKPPPPNSSIGWRVEFRPCETQLTDFENAAFVCFVVLLTRIILS 313 (632)
Q Consensus 234 FIRDPlviF~E~i~qdd~~~tDHFENIQSTNWQtmRFKPPP~~s~iGWRVEFRpmEvQlTDFENAAf~vFivLLtRaILs 313 (632)
| .=.++-|-.+|-+|= ==+||+|.|++|.|--+=+|++.|+-.|++.++.
T Consensus 216 ------------i------------~~~~~iwwdvRp~~~------~~tiEiRv~D~~~~~~~~~~~aal~~~Lv~~~~~ 265 (373)
T PRK13517 216 ------------I------------LDEGMVYWDIRPSPK------LGTVEVRVADVCLTLRELVALAALVRCLVVTADR 265 (373)
T ss_pred ------------c------------CCCCceEEecccCCC------CCceeEecCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 014566888887742 1169999999999998889999999888887763
Q ss_pred ----cCCceeeccchhhhhHHHHhhhcccccCceeeeecccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCC
Q psy11112 314 ----YNLNFVIPISKVDENMKRAQKRDALNREKFWFRRDCAIKKTGGEDSSIPGDSQQSRPPMDGTPETNPLYMNGNSVY 389 (632)
Q Consensus 314 ----~~LnfyIPISkVDENM~rAqkrdAv~~eKFwFRk~i~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 389 (632)
...---+|=..+.||+-+|.+. -+.-+-.|++
T Consensus 266 ~~~~~~~~~~~~~~~~~~n~wrAar~-Gl~a~~~~~~------------------------------------------- 301 (373)
T PRK13517 266 RLDAGEPLPTLPPWHVQENKWRAARY-GLDAEIIDDA------------------------------------------- 301 (373)
T ss_pred HHHcCCCCCCCCHHHHHHHHHHHHhc-CCCceeecCC-------------------------------------------
Confidence 2222345555788888888642 1111111110
Q ss_pred CCCCcccccCCCCCCCCCCCCCCCCcceeeeehhhhhcCCCCCcccchHHHHHhhhccCCChhHHHHHHHHHHHHhhhhc
Q psy11112 390 SGSDEAKYNGATNNNNNENIKQDGGEEYVEMTINEIINGKEGVFPGLAPLISRYLISMDVDTDTHCTIQQYLKLIQNRAS 469 (632)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~emTi~EIinGk~~~FPGLiplv~~YL~s~~vd~~t~~~i~~YL~lI~~RAs 469 (632)
.-+.+++.|++- -|++.+...|+..+++... ..|+..+. .
T Consensus 302 --------------------------~~~~~p~~~~~~-------~ll~~~~~~l~~~g~~~~~----~~~~~i~~---~ 341 (373)
T PRK13517 302 --------------------------DGRERPVTDDLR-------DLLERLEPVARELGCAEEL----AGVAEILR---R 341 (373)
T ss_pred --------------------------CCcEeEHHHHHH-------HHHHHHHHHHHHcCCHHHH----HHHHHHHH---c
Confidence 123445566652 5888999999999887553 34555555 2
Q ss_pred CccchhHHHHHhhhcc
Q psy11112 470 GEILTTASWIRSFVTS 485 (632)
Q Consensus 470 Gel~T~A~wiR~FV~~ 485 (632)
| |.|.|.|..++.
T Consensus 342 g---~~A~rqr~~~~~ 354 (373)
T PRK13517 342 G---AGYQRQRRVAER 354 (373)
T ss_pred C---CHHHHHHHHHHh
Confidence 4 999999997766
No 6
>PRK13515 carboxylate-amine ligase; Provisional
Probab=98.25 E-value=1e-06 Score=92.90 Aligned_cols=160 Identities=23% Similarity=0.310 Sum_probs=109.1
Q ss_pred cccccccccccccccCChhhHhhhhhhcCCccchhcccccccccchhhhhcccchhhhhccccccccccceeec-ccccc
Q psy11112 76 GFGMGCCCLQVTFQACNISEAKTLYDQLTPLCPIMNGTYFIFHSELSVFYNSLRTERILYFIQNASPIFRGYLT-DVDCR 154 (632)
Q Consensus 76 GFGMGccCLQvTfQA~nI~EAR~LYDQL~pl~PImLA~~~~~~~~~~~~~~~~~~~~~~~~LSAAsPi~rG~La-D~D~R 154 (632)
|--|-+|.+||-++..+-+++..++..+.++.|+++| |||+||++.|.-+ -...|
T Consensus 120 ~~~~~~~g~HVhv~~~d~e~~~~~~n~~~~~lP~llA------------------------LsanSPf~~G~dtg~~S~R 175 (371)
T PRK13515 120 ARRNLICGLHVHVGIPDREDRIDLMNQVRYFLPHLLA------------------------LSTSSPFWGGRDTGLKSYR 175 (371)
T ss_pred HHhhceeeeEEEeCCCCHHHHHHHHHHHHHHHHHHHH------------------------HHcCCccccCCCCchhhhH
Confidence 4566789999999999999999999999999999999 9999999999655 34455
Q ss_pred cccccccccCCcccccccccCCCCCccccCCCCCccccccCCCCCCCCCCCCCCCCHHHHHHHHHcCCChhhhhhhhhhh
Q psy11112 155 WNVISGSVDCRTREERGLEPLRKNRFVIPKSRYDSIDSYLSPEHGEKYNDVPLIYDRDIYNQLIQNGIDPMLSQHIAHLF 234 (632)
Q Consensus 155 WnVIS~SVDdRT~eErg~~pL~~~~~~IpKSRYdSid~Yis~~~~~~YNDi~~~~de~iy~~L~~~GiD~~LA~H~AHLF 234 (632)
|.+-.. .+.. | +| ..|++..-|. +..+.|++.|+
T Consensus 176 ~~~~~~-----~p~~-g----------~p-~~~~~~~~y~-----------------~~~~~l~~~g~------------ 209 (371)
T PRK13515 176 SAVFDE-----FPRT-G----------LP-PAFPSWAEYQ-----------------RYVALLVKTGC------------ 209 (371)
T ss_pred HHHHhh-----CCCC-C----------CC-CCCCCHHHHH-----------------HHHHHHHhcCC------------
Confidence 555431 1110 1 11 1233333332 24445565554
Q ss_pred hccccchhccccccCCCCCcccccccccCCCCcceecCCCCCCCCCceeeeeccCccCCchhhhHHHHHHHHHHHHHHhc
Q psy11112 235 IRDTVSLFNEKVNQNDEIDTDHFENIQSTNWQTMRFKPPPPNSSIGWRVEFRPCETQLTDFENAAFVCFVVLLTRIILSY 314 (632)
Q Consensus 235 IRDPlviF~E~i~qdd~~~tDHFENIQSTNWQtmRFKPPP~~s~iGWRVEFRpmEvQlTDFENAAf~vFivLLtRaILs~ 314 (632)
|.| ..+-|-.+|-+|= .| +||+|.++++.|--+..|++.|+..|++.+++.
T Consensus 210 i~~-----------------------~~~~~~~vRp~~~-----~~-tiEiRv~D~~p~~~~~~a~aal~~~lv~~l~~~ 260 (371)
T PRK13515 210 IDD-----------------------AKKIWWDLRPSPR-----FP-TLELRICDVCTRLDDALALAALFQALVRKLYRL 260 (371)
T ss_pred cCC-----------------------CCeEEEEeccCCC-----CC-CeeEecCCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 111 3556777774321 22 799999999999999999999999999888642
Q ss_pred -CCce---eeccchhhhhHHHHhh
Q psy11112 315 -NLNF---VIPISKVDENMKRAQK 334 (632)
Q Consensus 315 -~Lnf---yIPISkVDENM~rAqk 334 (632)
+... -+|-..+.||+-+|.+
T Consensus 261 ~~~~~~~~~~~~~~~~~n~w~Aar 284 (371)
T PRK13515 261 RRQNLTFRVYRRALIEENKWRAQR 284 (371)
T ss_pred HhcCCCCCcccHHHHHHHHHHHHh
Confidence 2121 3344556677777664
No 7
>TIGR02050 gshA_cyan_rel uncharacterized enzyme. This family represents a division of a larger family, the other branch of which is predicted to act as glutamate--cysteine ligase (the first of two enzymes in glutathione biosynthesis) in the cyanobacteria. Species containing this protein, however, are generally not believe to make glutathione, and the function is unknown.
Probab=98.01 E-value=5.9e-06 Score=84.81 Aligned_cols=161 Identities=23% Similarity=0.337 Sum_probs=112.0
Q ss_pred ccccccccccccccccCChhhHhhhhhhcCCccchhcccccccccchhhhhcccchhhhhccccccccccceeec-cccc
Q psy11112 75 MGFGMGCCCLQVTFQACNISEAKTLYDQLTPLCPIMNGTYFIFHSELSVFYNSLRTERILYFIQNASPIFRGYLT-DVDC 153 (632)
Q Consensus 75 MGFGMGccCLQvTfQA~nI~EAR~LYDQL~pl~PImLA~~~~~~~~~~~~~~~~~~~~~~~~LSAAsPi~rG~La-D~D~ 153 (632)
++..|-+|.+||-++..+-++|-.++..+.++.|+|+| |||.||++.|.-+ -..+
T Consensus 114 ~~~~~~~~g~hVhv~v~d~~~~i~~~n~l~~~lP~llA------------------------LsANSPf~~G~dtg~~s~ 169 (287)
T TIGR02050 114 VARQQLVFGLHVHVGVPSPDDAVAVLNRLLPWLPHLLA------------------------LSASSPFWQGFDTGYASY 169 (287)
T ss_pred HHHhHceeeEEEEeCCCCHHHHHHHHHHHHHHHHHHHH------------------------HHhCCccccCcCCchHHH
Confidence 35567899999999999999999999999999999999 9999999999865 3455
Q ss_pred ccccccccccCCcccccccccCCCCCccccCCCCCccccccCCCCCCCCCCCCCCCCHHHHHHHHHcCCChhhhhhhhhh
Q psy11112 154 RWNVISGSVDCRTREERGLEPLRKNRFVIPKSRYDSIDSYLSPEHGEKYNDVPLIYDRDIYNQLIQNGIDPMLSQHIAHL 233 (632)
Q Consensus 154 RWnVIS~SVDdRT~eErg~~pL~~~~~~IpKSRYdSid~Yis~~~~~~YNDi~~~~de~iy~~L~~~GiD~~LA~H~AHL 233 (632)
|..+-.+.-+ .|. | ..+++-+.| +...+.|++.|+
T Consensus 170 R~~i~~~~p~------~G~----------p-~~f~~~~~y-----------------~~~~~~l~~~g~----------- 204 (287)
T TIGR02050 170 RRNIFQAWPT------AGL----------P-PAFGSWDAF-----------------EAYFADLLETGV----------- 204 (287)
T ss_pred HHHHHHhCCC------CCC----------C-CcCCCHHHH-----------------HHHHHHHHHcCC-----------
Confidence 6444333211 121 1 122221111 124456677775
Q ss_pred hhccccchhccccccCCCCCcccccccccCCCCcceecCCCCCCCCCceeeeeccCccCCchhhhHHHHHHHHHHHHHHh
Q psy11112 234 FIRDTVSLFNEKVNQNDEIDTDHFENIQSTNWQTMRFKPPPPNSSIGWRVEFRPCETQLTDFENAAFVCFVVLLTRIILS 313 (632)
Q Consensus 234 FIRDPlviF~E~i~qdd~~~tDHFENIQSTNWQtmRFKPPP~~s~iGWRVEFRpmEvQlTDFENAAf~vFivLLtRaILs 313 (632)
|.| .++-|--+|-+|= -=+||+|.|++|.|=-+=+|++.|+-.|++.++.
T Consensus 205 -i~~-----------------------~~~iww~vRp~~~------~~tvE~Rv~D~~~~~~~~~~~aal~~~Lv~~~~~ 254 (287)
T TIGR02050 205 -IDD-----------------------DGDLWWDIRPSPH------FGTVEVRVADTCLNLEHAVAIAALIRALVEWLLR 254 (287)
T ss_pred -cCC-----------------------CCeeEEEeccCCC------CCCeeEEcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 100 3667888886542 2269999999999999999999999999999886
Q ss_pred c-CCce---eeccchhhhhHHHHhh
Q psy11112 314 Y-NLNF---VIPISKVDENMKRAQK 334 (632)
Q Consensus 314 ~-~Lnf---yIPISkVDENM~rAqk 334 (632)
- .-.. -+|=..+.||.=||.+
T Consensus 255 ~~~~~~~~~~~~~~~~~~n~wrAaR 279 (287)
T TIGR02050 255 EWPAPFPVPELDYWLLQENKWRAAR 279 (287)
T ss_pred hHhcCCCCCCCCHHHHHHHHHHHHh
Confidence 5 1221 2233366777777765
No 8
>PRK13516 gamma-glutamyl:cysteine ligase; Provisional
Probab=97.83 E-value=2.2e-05 Score=83.80 Aligned_cols=161 Identities=20% Similarity=0.247 Sum_probs=107.6
Q ss_pred ccccccccccccccccCChhhHhhhhhhcCCccchhcccccccccchhhhhcccchhhhhccccccccccceeecc-ccc
Q psy11112 75 MGFGMGCCCLQVTFQACNISEAKTLYDQLTPLCPIMNGTYFIFHSELSVFYNSLRTERILYFIQNASPIFRGYLTD-VDC 153 (632)
Q Consensus 75 MGFGMGccCLQvTfQA~nI~EAR~LYDQL~pl~PImLA~~~~~~~~~~~~~~~~~~~~~~~~LSAAsPi~rG~LaD-~D~ 153 (632)
++-.+.+|.+||-+.-.+.++|-.+.+.|.++.|+++| |||+||++.|.-+. ...
T Consensus 126 ~~~~~~i~G~HVHvg~~d~~~av~~~~~l~~~lP~llA------------------------LsAsSPf~~G~dTG~~S~ 181 (373)
T PRK13516 126 LAKQFTVFGQHVHIGCPSGDDALYLLHGLSRYVPHFIA------------------------LSASSPYVQGVDTGFASA 181 (373)
T ss_pred hhhhheeeeeEEEeCCCCHHHHHHHHHHHHhHhHHHHH------------------------HHhCCccccCcCCcchhH
Confidence 33346677799999999999999999999999999999 99999999998652 234
Q ss_pred ccccccccccCCcccccccccCCCCCccccCCCCCccccccCCCCCCCCCCCCCCCCHHHHHHHHHcCCChhhhhhhhhh
Q psy11112 154 RWNVISGSVDCRTREERGLEPLRKNRFVIPKSRYDSIDSYLSPEHGEKYNDVPLIYDRDIYNQLIQNGIDPMLSQHIAHL 233 (632)
Q Consensus 154 RWnVIS~SVDdRT~eErg~~pL~~~~~~IpKSRYdSid~Yis~~~~~~YNDi~~~~de~iy~~L~~~GiD~~LA~H~AHL 233 (632)
||.+-++ +. |+ |.-|+ +.+-+ . + +...+.|++.|+-..
T Consensus 182 R~~~~~~-~P-~~----G~pp~-----------~~~~~---------~-------y-~~~~~~l~~~G~i~d-------- 219 (373)
T PRK13516 182 RLNSVSA-FP-LS----GRAPF-----------VLNWQ---------E-------F-EAYFRKMSYTGVIDS-------- 219 (373)
T ss_pred HHHHHhc-CC-CC----CCCCC-----------cCCHH---------H-------H-HHHHHHHHHcCCcCC--------
Confidence 5443322 11 00 11110 11111 1 1 146677777776322
Q ss_pred hhccccchhccccccCCCCCcccccccccCCCCcceecCCCCCCCCCceeeeeccCccCCchhhhHHHHHHHHHHHHHHh
Q psy11112 234 FIRDTVSLFNEKVNQNDEIDTDHFENIQSTNWQTMRFKPPPPNSSIGWRVEFRPCETQLTDFENAAFVCFVVLLTRIILS 313 (632)
Q Consensus 234 FIRDPlviF~E~i~qdd~~~tDHFENIQSTNWQtmRFKPPP~~s~iGWRVEFRpmEvQlTDFENAAf~vFivLLtRaILs 313 (632)
+= ++ =| .+| |- ..-| .||+|-|++|+|=-|=+|++.|+-.|++.++.
T Consensus 220 ----~~----------------~~------~W-dvR---p~--~~~~-TvEiRv~D~~~~~~~~~~iaal~~alv~~~~~ 266 (373)
T PRK13516 220 ----MK----------------DF------YW-DIR---PK--PEFG-TVEVRVMDTPLTLERAAAIAAYIQALARWLLT 266 (373)
T ss_pred ----CC----------------ee------EE-Eec---cC--CCCC-CeEEecCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 10 11 25 577 22 2455 89999999999999999999999999998876
Q ss_pred cCCcee-ecc-chhhhhHHHHhh
Q psy11112 314 YNLNFV-IPI-SKVDENMKRAQK 334 (632)
Q Consensus 314 ~~Lnfy-IPI-SkVDENM~rAqk 334 (632)
-..--. .+- ..+.||.=||.+
T Consensus 267 ~~~~~~~~~~~~~~~~n~wrAaR 289 (373)
T PRK13516 267 ERPFKPQEDDYLVYTFNRFQACR 289 (373)
T ss_pred cCCCCCCcChHHHHHHHHHHHHH
Confidence 531111 222 467888888875
No 9
>TIGR02048 gshA_cyano glutamate--cysteine ligase, cyanobacterial, putative. This family consists of proteins believed (see Copley SD, Dhillon JK, 2002) to be the glutamate--cysteine ligases of several cyanobacteria, which are known to make glutathione.
Probab=97.14 E-value=0.00039 Score=74.65 Aligned_cols=52 Identities=13% Similarity=0.218 Sum_probs=48.0
Q ss_pred cccccccccccccccccCChhhHhhhhhhcCCccchhcccccccccchhhhhcccchhhhhccccccccccceeec
Q psy11112 74 AMGFGMGCCCLQVTFQACNISEAKTLYDQLTPLCPIMNGTYFIFHSELSVFYNSLRTERILYFIQNASPIFRGYLT 149 (632)
Q Consensus 74 AMGFGMGccCLQvTfQA~nI~EAR~LYDQL~pl~PImLA~~~~~~~~~~~~~~~~~~~~~~~~LSAAsPi~rG~La 149 (632)
..|..+..|.+||-+...|-++|-.+.+.+.++.|++|| |||+||++.|.-+
T Consensus 107 ~~~~~~~i~G~HVHVgv~d~d~av~v~n~lr~~LP~LlA------------------------LSAsSPf~~G~dT 158 (376)
T TIGR02048 107 TYGTQVVTASVHINIGIPDPEELMRACRLVRMEAPLFLA------------------------LSASSPFLDGQVT 158 (376)
T ss_pred HhhhhheeeEEEEEcCCCCHHHHHHHHHHHHHHHHHHHH------------------------HhcCCccccCCCc
Confidence 455567799999999999999999999999999999999 9999999999865
No 10
>PRK13518 carboxylate-amine ligase; Provisional
Probab=97.04 E-value=0.0014 Score=70.24 Aligned_cols=171 Identities=20% Similarity=0.220 Sum_probs=108.4
Q ss_pred CCCCeeee-cccc--c-cccccccccccccCChhhHhhhhhhcCCccchhcccccccccchhhhhcccchhhhhcccccc
Q psy11112 65 SLPDHVYL-DAMG--F-GMGCCCLQVTFQACNISEAKTLYDQLTPLCPIMNGTYFIFHSELSVFYNSLRTERILYFIQNA 140 (632)
Q Consensus 65 a~pdhIYM-DAMG--F-GMGccCLQvTfQA~nI~EAR~LYDQL~pl~PImLA~~~~~~~~~~~~~~~~~~~~~~~~LSAA 140 (632)
++|-|-+| +-.| - .+|+|.+||-+...+-++|-.+.+.|.+..|+|+| |||.
T Consensus 113 ~~~RY~~m~~~~~~~~~~~~~~G~HVHVg~~d~d~av~v~n~lr~~LP~LlA------------------------LsAn 168 (357)
T PRK13518 113 EKPRYRSQLDRIQYPQHRNTTAGLHVHVGVDDADKAVWIANELRWHLPILLA------------------------LSAN 168 (357)
T ss_pred CCcHHHHHHHhcccchhcceeeEEEEEeCCCCHHHHHHHHHHHHhHHHHHHH------------------------HHcC
Confidence 46667677 2222 1 35899999999999999999999999999999999 9999
Q ss_pred ccccceeecccc-cccccccccccCCcccccccccCCCCCccccCCCCCccccccCCCCCCCCCCCCCCCCHHHHHHHHH
Q psy11112 141 SPIFRGYLTDVD-CRWNVISGSVDCRTREERGLEPLRKNRFVIPKSRYDSIDSYLSPEHGEKYNDVPLIYDRDIYNQLIQ 219 (632)
Q Consensus 141 sPi~rG~LaD~D-~RWnVIS~SVDdRT~eErg~~pL~~~~~~IpKSRYdSid~Yis~~~~~~YNDi~~~~de~iy~~L~~ 219 (632)
||++.|.-+..- .|+.+- .+.+. .|+.| |+.+. ..| ++..+.|++
T Consensus 169 SPf~~G~dTG~aS~R~~iw-----~~~P~-aG~p~------------------~f~~~--~~y--------e~~v~~l~~ 214 (357)
T PRK13518 169 SPYWNGFDTGLASARAKIF-----EGLPN-TGMPT------------------AFEDF--EAF--------QRFERRMVE 214 (357)
T ss_pred CccccCcCCCcccHHHHHH-----HhCCC-CCCCc------------------ccCCH--HHH--------HHHHHHHHh
Confidence 999999865221 122211 01111 22111 11100 011 234556667
Q ss_pred cCCChhhhhhhhhhhhccccchhccccccCCCCCcccccccccCCCCcceecCCCCCCCCCceeeeeccCccCCchhhhH
Q psy11112 220 NGIDPMLSQHIAHLFIRDTVSLFNEKVNQNDEIDTDHFENIQSTNWQTMRFKPPPPNSSIGWRVEFRPCETQLTDFENAA 299 (632)
Q Consensus 220 ~GiD~~LA~H~AHLFIRDPlviF~E~i~qdd~~~tDHFENIQSTNWQtmRFKPPP~~s~iGWRVEFRpmEvQlTDFENAA 299 (632)
.|+ |.|+ +.-|=.+|=+|.-| .||+|-|++|+|=-|=++
T Consensus 215 ~G~------------i~d~-----------------------~~i~wdvRps~~~p------TvEiRv~D~~~~~~~~~~ 253 (357)
T PRK13518 215 TGS------------IEDR-----------------------GELWYDVRPHTGHG------TVEVRTPDAQADPDVVLA 253 (357)
T ss_pred cCC------------cCCC-----------------------CceEEccCCCCCCC------ceeEecCCCCCCHHHHHH
Confidence 776 2221 11255556555433 599999999999999999
Q ss_pred HHHHHHHHHHHHHhc-CCc---eeeccchhhhhHHHHhh
Q psy11112 300 FVCFVVLLTRIILSY-NLN---FVIPISKVDENMKRAQK 334 (632)
Q Consensus 300 f~vFivLLtRaILs~-~Ln---fyIPISkVDENM~rAqk 334 (632)
.+.|+-.|++..+.- ..+ --+|=..+.||.=||.+
T Consensus 254 lAal~raLv~~~~~~~~~g~~~~~~~~~~~~~n~WrAaR 292 (357)
T PRK13518 254 FVEYVHALVTDLAERYEDGESGTTLRRELLDENKWRAMR 292 (357)
T ss_pred HHHHHHHHHHHHHhccccCCCCccCCHHHHHHHHHHHHh
Confidence 999888888777653 222 12234457777777764
No 11
>PF04107 GCS2: Glutamate-cysteine ligase family 2(GCS2); InterPro: IPR006336 Also known as gamma-glutamylcysteine synthetase and gamma-ECS (6.3.2.2 from EC). This enzyme catalyses the first and rate limiting step in de novo glutathione biosynthesis. Members of this family are found in archaea, bacteria and plants. May and Leaver [] discuss the possible evolutionary origins of glutamate-cysteine ligase enzymes in different organisms and suggest that it evolved independently in different eukaryotes, from an ancestral bacterial enzyme. They also state that Arabidopsis thaliana (Mouse-ear cress) gamma-glutamylcysteine synthetase is structurally unrelated to mammalian, yeast and Escherichia coli homologues. In plants, there are separate cytosolic and chloroplast forms of the enzyme.; GO: 0004357 glutamate-cysteine ligase activity, 0006750 glutathione biosynthetic process; PDB: 1R8G_A 2GWC_E 2GWD_A 1TT4_B.
Probab=93.93 E-value=0.016 Score=59.33 Aligned_cols=60 Identities=22% Similarity=0.323 Sum_probs=44.3
Q ss_pred ccccccccccccccccCChhhHh-hhhhhcCCccchhcccccccccchhhhhcccchhhhhccccccccccceeeccc-c
Q psy11112 75 MGFGMGCCCLQVTFQACNISEAK-TLYDQLTPLCPIMNGTYFIFHSELSVFYNSLRTERILYFIQNASPIFRGYLTDV-D 152 (632)
Q Consensus 75 MGFGMGccCLQvTfQA~nI~EAR-~LYDQL~pl~PImLA~~~~~~~~~~~~~~~~~~~~~~~~LSAAsPi~rG~LaD~-D 152 (632)
+|-.|.+|-++|-++..+.+|+- .++..+.++.|+++| |||.||++.|.-+.. .
T Consensus 116 ~~~~~~~~g~hvhV~v~~~~e~~v~~~n~~~~~~P~llA------------------------LsANSP~~~G~~tg~~s 171 (288)
T PF04107_consen 116 LARRMMTCGAHVHVGVDDGDEAAVRVMNALRPWLPVLLA------------------------LSANSPFWEGRDTGYAS 171 (288)
T ss_dssp GCCSHHBHEEEEEEEESSSHHHHHHHHHHHHTTHHHHHH------------------------HH--B-EETTEE-S-SB
T ss_pred hhhhhhhcccceEEeCCCccHHHHHHHHHHHHHhHHHHH------------------------HHcCCccccCCcCCCcC
Confidence 47778888888888888866665 999999999999999 999999999986533 3
Q ss_pred cccccc
Q psy11112 153 CRWNVI 158 (632)
Q Consensus 153 ~RWnVI 158 (632)
.|+.+-
T Consensus 172 ~R~~~~ 177 (288)
T PF04107_consen 172 YRSRIW 177 (288)
T ss_dssp HGGGCC
T ss_pred cHHHHH
Confidence 444443
No 12
>PLN02611 glutamate--cysteine ligase
Probab=92.62 E-value=0.028 Score=62.69 Aligned_cols=162 Identities=19% Similarity=0.224 Sum_probs=96.0
Q ss_pred cccc--cccccccccccCChhhHhhhhhhcCCccchhcccccccccchhhhhcccchhhhhccccccccccceeecccc-
Q psy11112 76 GFGM--GCCCLQVTFQACNISEAKTLYDQLTPLCPIMNGTYFIFHSELSVFYNSLRTERILYFIQNASPIFRGYLTDVD- 152 (632)
Q Consensus 76 GFGM--GccCLQvTfQA~nI~EAR~LYDQL~pl~PImLA~~~~~~~~~~~~~~~~~~~~~~~~LSAAsPi~rG~LaD~D- 152 (632)
|-.| +.|-+||-+...+-+++...+..+.++.|+++| |+|.||++.|.-+..-
T Consensus 203 g~~MM~~t~g~QVhvd~~seed~v~~~~~~~~l~Pvl~A------------------------LfANSPf~eG~~tG~~S 258 (482)
T PLN02611 203 GLDMMFRTCTVQVNLDFSSEQDMVRKFRVGLALQPIATA------------------------LFANSPFTEGKPNGYLS 258 (482)
T ss_pred hhhhccceEEEEEEecCCCHHHHHHHHHHHHHHHHHHHH------------------------HHhCCccccCcCCCCcc
Confidence 3667 899999999999999999999999999999999 9999999999855432
Q ss_pred cccccccccccC-CcccccccccCCCCCccccCCCCCccccccCCC------CCCCCCCCCCCCCHHHHHHHHHcCCChh
Q psy11112 153 CRWNVISGSVDC-RTREERGLEPLRKNRFVIPKSRYDSIDSYLSPE------HGEKYNDVPLIYDRDIYNQLIQNGIDPM 225 (632)
Q Consensus 153 ~RWnVIS~SVDd-RT~eErg~~pL~~~~~~IpKSRYdSid~Yis~~------~~~~YNDi~~~~de~iy~~L~~~GiD~~ 225 (632)
.|..+-. .+|- ||- |+.+.-++. .-|..---|+-+- ....|-|.. ...+...+++++..
T Consensus 259 ~R~~iW~-~~D~~rtg---~~P~~F~d~-----~~fe~yv~~~Ld~Pm~fv~r~g~~~~~~----g~tFrd~~~g~~~~- 324 (482)
T PLN02611 259 YRSHIWT-DTDKDRTG---MLPFVFDDD-----FGFERYVDYALDVPMYFVYRNGKYIDCT----GMSFRDFMAGKLPQ- 324 (482)
T ss_pred hHHHHHH-hcCCCCCC---CCCCcCCCh-----hHHHHHHHHHHCCCeEEEEeCCceecCC----CCCHHHHHcCcCcc-
Confidence 3333332 2232 441 111110000 0011111111110 011221111 11333333333210
Q ss_pred hhhhhhhhhhccccchhccccccCCCCCcccccccccCCCCcceecCCCCCCCCCceeeeeccCccCCchhhhHHHHHHH
Q psy11112 226 LSQHIAHLFIRDTVSLFNEKVNQNDEIDTDHFENIQSTNWQTMRFKPPPPNSSIGWRVEFRPCETQLTDFENAAFVCFVV 305 (632)
Q Consensus 226 LA~H~AHLFIRDPlviF~E~i~qdd~~~tDHFENIQSTNWQtmRFKPPP~~s~iGWRVEFRpmEvQlTDFENAAf~vFiv 305 (632)
|. +..-+.+.||+--||-++-||.|- =+|+|..+-|--+. +-|++.|++
T Consensus 325 ~~---------------------~~~pt~~D~~~HLSt~FP~VRlK~---------~lE~R~aDa~P~~~-~~a~~A~~~ 373 (482)
T PLN02611 325 LP---------------------GELPTLNDWENHLTTIFPEVRLKR---------YLEMRGADGGPWRR-LCALPAFWV 373 (482)
T ss_pred CC---------------------CCCCCHHHHHHHHhcCCCCccccc---------eEEeccccCCChhh-hhhHHHHHH
Confidence 00 122334689999999999999884 38999999999887 566666655
Q ss_pred H
Q psy11112 306 L 306 (632)
Q Consensus 306 L 306 (632)
=
T Consensus 374 G 374 (482)
T PLN02611 374 G 374 (482)
T ss_pred H
Confidence 3
No 13
>TIGR01436 glu_cys_lig_pln glutamate--cysteine ligase, plant type. This model represents one of two highly dissimilar forms of glutamate--cysteine ligase (gamma-glutamylcysteine synthetase), an enzyme of glutathione biosynthesis. The other type is modeled by TIGR01434. This type is found in plants (with a probable transit peptide), root nodule and other bacteria, but not E. coli and closely related species.
Probab=91.33 E-value=0.039 Score=60.94 Aligned_cols=51 Identities=20% Similarity=0.384 Sum_probs=47.0
Q ss_pred cccccc--ccccccccccCChhhHhhhhhhcCCccchhcccccccccchhhhhcccchhhhhccccccccccceeec
Q psy11112 75 MGFGMG--CCCLQVTFQACNISEAKTLYDQLTPLCPIMNGTYFIFHSELSVFYNSLRTERILYFIQNASPIFRGYLT 149 (632)
Q Consensus 75 MGFGMG--ccCLQvTfQA~nI~EAR~LYDQL~pl~PImLA~~~~~~~~~~~~~~~~~~~~~~~~LSAAsPi~rG~La 149 (632)
+|-.|- .|-+||-+...+-+++...+..+.++.|+++| |+|.||++.|.-+
T Consensus 159 ~g~~mm~~t~g~qVhld~~~e~d~v~~~~~~~~l~Pvl~A------------------------LfANSPf~~G~~t 211 (446)
T TIGR01436 159 LGLDMMLRTCTVQVNLDFSSEADMVRKFRASLALQPLATA------------------------LFANSPFLEGKPN 211 (446)
T ss_pred HHHHHhHhheeEEEeeCCCCHHHHHHHHHHHHHHHHHHHH------------------------HHhCCccccCCCC
Confidence 666787 69999999999999999999999999999999 9999999999755
No 14
>COG2170 Uncharacterized conserved protein [Function unknown]
Probab=91.04 E-value=0.49 Score=51.53 Aligned_cols=48 Identities=21% Similarity=0.248 Sum_probs=42.7
Q ss_pred cccccccccccccCChhhHhhhhhhcCCccchhcccccccccchhhhhcccchhhhhccccccccccceeec
Q psy11112 78 GMGCCCLQVTFQACNISEAKTLYDQLTPLCPIMNGTYFIFHSELSVFYNSLRTERILYFIQNASPIFRGYLT 149 (632)
Q Consensus 78 GMGccCLQvTfQA~nI~EAR~LYDQL~pl~PImLA~~~~~~~~~~~~~~~~~~~~~~~~LSAAsPi~rG~La 149 (632)
=|=-|.+.|-+-..+.++|-++--.|.+..|.+|| |||+||+..|.-+
T Consensus 120 q~~v~G~HVHVGi~~~d~~~~~l~~l~~~~PhlLA------------------------LSASSPf~~G~dT 167 (369)
T COG2170 120 QMTVAGQHVHVGIPSPDDAMYLLHRLLRYVPHLLA------------------------LSASSPFWQGTDT 167 (369)
T ss_pred heeeeeEEEEecCCCHHHHHHHHHHHHhhhhHHHh------------------------hhcCCccccCccc
Confidence 35556678888999999999999999999999999 9999999999754
No 15
>TIGR03444 gshA_related glutamate--cysteine ligase family protein. Members of this bacterial protein family bear homology to glutamate--cysteine ligase, an enzyme in the two-step pathway of glutathione (GSH) biosynthesis, but are distinctly different. Among the bacterial genomes that carry the uncharacterized methyltransferase (TIGR03438) and conserved hypothetical protein TIGR03440, this protein is found in a subset, always in the vicinity of these other genes. Conserved hypothetical protein TIGR03442 is found in these same genomes. The role of this cassette is probably biosynthetic, but the product is unknown.
Probab=74.00 E-value=0.7 Score=50.81 Aligned_cols=59 Identities=24% Similarity=0.211 Sum_probs=43.8
Q ss_pred cccccccCC-hhhHhhhhhhcCCccchhcccccccccchhhhhcccchhhhhccccccccccceeecc-ccccccccccc
Q psy11112 84 LQVTFQACN-ISEAKTLYDQLTPLCPIMNGTYFIFHSELSVFYNSLRTERILYFIQNASPIFRGYLTD-VDCRWNVISGS 161 (632)
Q Consensus 84 LQvTfQA~n-I~EAR~LYDQL~pl~PImLA~~~~~~~~~~~~~~~~~~~~~~~~LSAAsPi~rG~LaD-~D~RWnVIS~S 161 (632)
.||-++..+ .++...-|--..-|.|+++| |+|.||++.|.-+. .-.|..+-.+.
T Consensus 152 VQV~ld~~~~e~D~~~k~rva~aL~PvLlA------------------------LfANSPf~~Gr~tG~~S~R~~iW~~~ 207 (390)
T TIGR03444 152 VQVNLDAGTDPAEWAERWRLAHALGPVLIA------------------------AFANSPALGGRPTGWRSTRQRVWGQL 207 (390)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHHHHHHHH------------------------HHhCCccccCCCCCchhhHHHHHhhC
Confidence 899998883 55545444444455999999 99999999998643 34677777777
Q ss_pred ccCCc
Q psy11112 162 VDCRT 166 (632)
Q Consensus 162 VDdRT 166 (632)
-++||
T Consensus 208 d~~Rt 212 (390)
T TIGR03444 208 DAART 212 (390)
T ss_pred CCCCC
Confidence 77788
No 16
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=27.35 E-value=24 Score=29.80 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=22.5
Q ss_pred HHHHHhhhccCCCCCCCCccchhhhHHH
Q psy11112 476 ASWIRSFVTSHPAYKQDSVVSEEITYDL 503 (632)
Q Consensus 476 A~wiR~FV~~HPdYKqDSVVS~~InYDL 503 (632)
-.=|++|+..||+.-||.+++-.|+-=|
T Consensus 11 ~~~m~~fie~hP~WDQ~Rl~~aALa~FL 38 (57)
T PF10929_consen 11 HQAMKDFIETHPNWDQYRLFQAALAGFL 38 (57)
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 4568999999999999999886655433
No 17
>PF10413 Rhodopsin_N: Amino terminal of the G-protein receptor rhodopsin; InterPro: IPR019477 Rhodopsin is the archetypal G-protein-coupled receptor. Such receptors participate in virtually all physiological processes as signalling molecules. They utilise heterotrimeric guanosine triphosphate (GTP)-binding proteins to transduce extracellular signals to intracellular events. Rhodopsin is important because of the pivotal role it plays in visual signal transduction. It is a dimeric transmembrane protein whose intradiskal surface consists of an N-terminal domain and three loops connecting six of the seven transmembrane helices. The N-terminal domain is a compact alpha-helical region with breaks and bends at proline residues outside the membrane []. This entry represents the N-terminal domain, while the transmembrane region is represented by (IPR000276 from INTERPRO). The N-terminal domain is extracellular is and is necessary for successful dimerisation and molecular stability []. ; PDB: 3PXO_A 4A4M_A 3OAX_A 2J4Y_A 2HPY_A 1F88_B 3PQR_A 1L9H_B 2I37_B 1GZM_B ....
Probab=26.51 E-value=27 Score=27.10 Aligned_cols=10 Identities=50% Similarity=0.830 Sum_probs=8.6
Q ss_pred CCceeeccch
Q psy11112 315 NLNFVIPISK 324 (632)
Q Consensus 315 ~LnfyIPISk 324 (632)
+.|||||||-
T Consensus 5 G~~FYiPmsN 14 (36)
T PF10413_consen 5 GPNFYIPMSN 14 (36)
T ss_dssp ESSEEESSTG
T ss_pred CCceeEeecc
Confidence 5789999986
No 18
>PF02341 RcbX: RbcX protein; InterPro: IPR003435 The RbcX protein has been identified as having a possible chaperonin-like function []. The rbcX gene is juxtaposed to and cotranscribed with rbcL and rbcS encoding RubisCO in Anabaena sp. (strain CA / ATCC 33047). RbcX has been shown to possess a chaperonin-like function assisting correct folding of RubisCO in Escherichia coli expression studies and is needed for RubisCO to reach its maximal activity [].; PDB: 2PEM_B 2PEI_L 2PEK_A 2Z46_E 2Z44_A 2PEJ_F 2PEN_D 2PEQ_B 2Z45_A 3Q20_A ....
Probab=21.40 E-value=75 Score=29.94 Aligned_cols=42 Identities=24% Similarity=0.401 Sum_probs=32.0
Q ss_pred ChhHHHHHHHHHHHHhhhh-----cCccchhHHHHHhhhccCCCCCCCC
Q psy11112 450 DTDTHCTIQQYLKLIQNRA-----SGEILTTASWIRSFVTSHPAYKQDS 493 (632)
Q Consensus 450 d~~t~~~i~~YL~lI~~RA-----sGel~T~A~wiR~FV~~HPdYKqDS 493 (632)
..|+...|..||.+..=|. ++.=|..|.|+.+|+..||- +|+
T Consensus 7 ~kdtak~L~~yfTy~Avr~Vl~QL~etnp~~~~wL~~F~~~~~~--~DG 53 (111)
T PF02341_consen 7 AKDTAKVLQSYFTYQAVRTVLAQLYETNPPAYIWLYNFLSRNPL--QDG 53 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHSTC--SSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC--ccH
Confidence 3467788889988776553 34448889999999999997 555
Done!