Query psy11112
Match_columns 632
No_of_seqs 153 out of 219
Neff 3.4
Searched_HMMs 29240
Date Fri Aug 16 18:14:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11112.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11112hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ig5_A Glutamate-cysteine liga 100.0 3E-183 1E-187 1485.7 27.6 436 18-537 199-672 (692)
2 3ig5_A Glutamate-cysteine liga 99.8 2.6E-22 8.9E-27 220.8 3.4 68 512-579 374-444 (692)
3 2gwd_A Glutamate cysteine liga 99.6 2E-17 6.9E-22 174.6 -2.6 165 73-310 167-345 (449)
4 1r8g_A Hypothetical protein YB 98.4 4.5E-07 1.5E-11 93.3 8.5 160 76-334 127-289 (372)
5 1va6_A Glutamate--cysteine lig 88.6 0.12 4E-06 56.8 1.1 74 260-334 293-382 (518)
6 3ln6_A Glutathione biosynthesi 75.6 2.1 7.1E-05 48.7 4.5 37 264-300 256-300 (750)
7 3ln7_A Glutathione biosynthesi 51.6 26 0.00088 40.0 7.4 43 264-307 261-312 (757)
8 3hyb_A RBCX protein; rubisco, 27.8 25 0.00086 33.5 2.0 43 449-494 26-73 (155)
9 2peq_A ORF134; helix bundle, p 27.6 30 0.001 32.1 2.5 43 450-494 7-54 (134)
10 3idw_A Actin cytoskeleton-regu 23.5 44 0.0015 28.3 2.5 28 213-240 5-32 (72)
11 3ka1_A RBCX protein; chaperone 23.3 32 0.0011 31.7 1.8 43 450-494 7-54 (126)
12 2py8_A Hypothetical protein RB 20.9 48 0.0017 31.2 2.5 42 450-493 7-53 (147)
No 1
>3ig5_A Glutamate-cysteine ligase; glutathione, ATP-grAsp, ATP-binding, glutathione biosynthesis, nucleotide-binding, phosphoprotein; HET: GLU PGE; 2.10A {Saccharomyces cerevisiae} PDB: 3ig8_A* 3lvv_A* 3lvw_A*
Probab=100.00 E-value=3.1e-183 Score=1485.74 Aligned_cols=436 Identities=43% Similarity=0.681 Sum_probs=410.8
Q ss_pred HHHHHHhhcCCCceeEecCccccCCCCCCC--cccCccCCCCchhhccCCCCCeeeeccccccccccccccccccCChhh
Q psy11112 18 TLWLTVLLISPVNNVILFPVYKDVNTPQPF--IEDLSQYGDQDKVSQQASLPDHVYLDAMGFGMGCCCLQVTFQACNISE 95 (632)
Q Consensus 18 ~~~~~~~~~~~~KV~InvPifkD~nTp~Pf--~e~~~~~~~~d~e~~~aa~pdhIYMDAMGFGMGccCLQvTfQA~nI~E 95 (632)
||---+..|||+||+||||||+|+|||+|. +.+...++++|+++.+|++||||||||||||||||||||||||+|++|
T Consensus 199 tLT~NIR~RRG~KV~InIPif~D~nTp~~d~ti~~~~~f~~~~~~~~~aa~p~~IyMDaMgFGMGccCLQvTfQa~ni~e 278 (692)
T 3ig5_A 199 NLTASIRTRRGEKVCMNVPMYKDIATPETDDSIYDRDWFLPEDKEAKLASKPGFIYMDSMGFGMGCSCLQVTFQAPNINK 278 (692)
T ss_dssp HHHHHHHHHHSSCCCEEEEBCCCTTCCSSCTTCCCCCSSTTGGGTHHHHCCTTEEEECSTHHHHTSCBEEEEEEESSHHH
T ss_pred HHHHHHHHhcCCCceEeeccccCCCCCCCCcccchhhhCCccccccccccCCCeeEeccccccccccceeeeeccCCHHH
Confidence 555567889999999999999999999942 223344667788899999999999999999999999999999999999
Q ss_pred HhhhhhhcCCccchhcccccccccchhhhhcccchhhhhccccccccccceeecccccccccccccccCCcccccccccC
Q psy11112 96 AKTLYDQLTPLCPIMNGTYFIFHSELSVFYNSLRTERILYFIQNASPIFRGYLTDVDCRWNVISGSVDCRTREERGLEPL 175 (632)
Q Consensus 96 AR~LYDQL~pl~PImLA~~~~~~~~~~~~~~~~~~~~~~~~LSAAsPi~rG~LaD~D~RWnVIS~SVDdRT~eErg~~pL 175 (632)
||+|||||+|+|||||| ||||||+|||+|+|+||||+|||+||||||+||||++||
T Consensus 279 AR~lYDqL~~l~PimLA------------------------LSAASP~~kG~lad~DtRW~vIs~sVDdRt~eErg~~pl 334 (692)
T 3ig5_A 279 ARYLYDALVNFAPIMLA------------------------FSAAAPAFKGWLADQDVRWNVISGAVDDRTPKERGVAPL 334 (692)
T ss_dssp HHHHHHHHTTHHHHHHH------------------------HTCCCCEETTEEBSBCCSHHHHHHHTCCCCTTTTTSCCS
T ss_pred HHHHHHhhhhhHHHHHH------------------------HhhcChhhcceecccchhHHHHHhhccCCCHHhcCCccc
Confidence 99999999999999999 999999999999999999999999999999999999998
Q ss_pred -------------C---CCCccccCCCCCccccccCCC--CCCCCCCCCCCCCHHHHHHHHHc---CCChhhhhhhhhhh
Q psy11112 176 -------------R---KNRFVIPKSRYDSIDSYLSPE--HGEKYNDVPLIYDRDIYNQLIQN---GIDPMLSQHIAHLF 234 (632)
Q Consensus 176 -------------~---~~~~~IpKSRYdSid~Yis~~--~~~~YNDi~~~~de~iy~~L~~~---GiD~~LA~H~AHLF 234 (632)
| +++++||||||||||+|||++ +.++|||+++++|+++|++|+++ |||+.||+||||||
T Consensus 335 ~~~~~~~~~~~~~k~~~~~~~~IpKSRY~si~~Yis~~~~~~~~yND~~~~~d~~i~~~L~~~~~~g~D~~LA~H~AHLF 414 (692)
T 3ig5_A 335 LPKYNKNGFGGIAKDVQDKVLEIPKSRYSSVDLFLGGSKFFNRTYNDTNVPINEKVLGRLLENDKAPLDYDLAKHFAHLY 414 (692)
T ss_dssp STTTSGGGCTTCCGGGGGGCCCCSSCSBSSCCCCCCCSTTCCGGGCCSCCCCCHHHHHHHHSCSSCCCCHHHHHHHHHHT
T ss_pred ccccccccccccccccccCccccccccCcchhhhccCCccchHhhCCCCcCcCHHHHHHHHhccccCccHHHHHHHHHHh
Confidence 4 578999999999999999986 68999999999999999999999 99999999999999
Q ss_pred hccccchhccccccCCCCCcccccccccCCCCcceecCCCC------CCCCCceeeeeccCccCCchhhhHHHHHHHHHH
Q psy11112 235 IRDTVSLFNEKVNQNDEIDTDHFENIQSTNWQTMRFKPPPP------NSSIGWRVEFRPCETQLTDFENAAFVCFVVLLT 308 (632)
Q Consensus 235 IRDPlviF~E~i~qdd~~~tDHFENIQSTNWQtmRFKPPP~------~s~iGWRVEFRpmEvQlTDFENAAf~vFivLLt 308 (632)
||||||||+|+|+|||+++|||||||||||||||||||||+ +++||||||||||||||||||||||++||||||
T Consensus 415 IRDPlvif~e~i~~dd~~~tdHFENiQSTNWqt~RFKPPp~~~~~~~~~~iGWRVEFRpmEvQlTDFENAAf~vFivLlt 494 (692)
T 3ig5_A 415 IRDPVSTFEELLNQDNKTSSNHFENIQSTNWQTLRFKPPTQQATPDKKDSPGWRVEFRPFEVQLLDFENAAYSVLIYLIV 494 (692)
T ss_dssp TSCCCCCBGGGSSCCTTTCCHHHHHHHTTCBCSEEEECCCTTCCTTCTTSCCEEEEECCCBCCSSHHHHHHHHHHHHHHH
T ss_pred ccCchhhhhhhhhccCcccccchhccccccCCccccCCCCccccCCCCCCCCceeeeecccccCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 789999999999999999999999999999999
Q ss_pred HHHHhcCCc--eeeccchhhhhHHHHhhhcccccCceeeeecccccCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCC
Q psy11112 309 RIILSYNLN--FVIPISKVDENMKRAQKRDALNREKFWFRRDCAIKKTGGEDSSIPGDSQQSRPPMDGTPETNPLYMNGN 386 (632)
Q Consensus 309 RaILs~~Ln--fyIPISkVDENM~rAqkrdAv~~eKFwFRk~i~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 386 (632)
||||+|+|| ||||||||||||+||||||||++||||||+++. .
T Consensus 495 r~IL~~~ln~~fyiPiSkVdeNM~~A~~rdAv~~~kF~fR~~~~--~--------------------------------- 539 (692)
T 3ig5_A 495 DSILTFSDNINAYIHMSKVWENMKIAHHRDAILFEKFHWKKSFR--N--------------------------------- 539 (692)
T ss_dssp HHHHHTTTTCCCCCCHHHHHHHHHHTTBTTHHHHCEEEEESCSS--C---------------------------------
T ss_pred HHHHhcCcCcCeEeecchhHhHHHhhhhhchhhhccceeccCCC--C---------------------------------
Confidence 999999999 999999999999999999999999999997654 0
Q ss_pred CCCCCCCcccccCCCCCCCCCCCCCCCCcceeeeehhhhhcCCCCC-cccchHHHHHhhhccCCChhHHH------HHHH
Q psy11112 387 SVYSGSDEAKYNGATNNNNNENIKQDGGEEYVEMTINEIINGKEGV-FPGLAPLISRYLISMDVDTDTHC------TIQQ 459 (632)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~emTi~EIinGk~~~-FPGLiplv~~YL~s~~vd~~t~~------~i~~ 459 (632)
+.+++|++|||+||||||+++ ||||||+|++||+++++|.+++| +|.+
T Consensus 540 -------------------------~~~~~~~~mti~EI~nGk~~~~FpGli~lv~~yl~~~~~d~~~~~~~~~~~~l~~ 594 (692)
T 3ig5_A 540 -------------------------DTDVETEDYSISEIFHNPENGIFPQFVTPILCQKGFVTKDWKELKHSSKHERLYY 594 (692)
T ss_dssp -------------------------SSCCCEEEEEHHHHHHCTTTCHHHHTHHHHHHHTTSCSSCGGGGGGCSSCHHHHH
T ss_pred -------------------------CCccceeeeeHHHHhcCCCCCcCcchHHHHHHHHhhccccchhhcchhhHHHHHH
Confidence 012579999999999999888 99999999999999999999999 9999
Q ss_pred HHHHHhhhhcCccchhHHHHHhhhccCCCCCCCCccchhhhHHHHHhhhhhcCCCCCCCCCCcccchHHHHHHHHcCC
Q psy11112 460 YLKLIQNRASGEILTTASWIRSFVTSHPAYKQDSVVSEEITYDLLLKSHHIQTGRTPYNDVPLIYDRDIYNQLIQNGI 537 (632)
Q Consensus 460 YL~lI~~RAsGel~T~A~wiR~FV~~HPdYKqDSVVS~~InYDLl~~~~~I~~g~~~~ND~~lI~d~~~y~~L~~~gi 537 (632)
||+||++||||||||+|+|||+||++||+||||||||++||||||++|++|++|..+++++.=-+-+.+=+.|.+.|.
T Consensus 595 YL~lI~~RAsG~l~T~A~w~R~FV~~Hp~Yk~DSvVs~~I~yDLi~~~~~I~~~~~~~~~l~~~~g~~~~~~~~~~~~ 672 (692)
T 3ig5_A 595 YLKLISDRASGELPTTAKFFRNFVLQHPDYKHDSKISKSINYDLLSTCDRLTHLDDSKGELTSFLGAEIAEYVKKNKP 672 (692)
T ss_dssp HHHHHHHHHTTSSCCHHHHHHHHHHTCTTCCSSSBCCHHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHhcCcccccCCcCchhhHHHHHHHHHHHhcCCcCCcHHHHHhhHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999998888755577788888888884
No 2
>3ig5_A Glutamate-cysteine ligase; glutathione, ATP-grAsp, ATP-binding, glutathione biosynthesis, nucleotide-binding, phosphoprotein; HET: GLU PGE; 2.10A {Saccharomyces cerevisiae} PDB: 3ig8_A* 3lvv_A* 3lvw_A*
Probab=99.84 E-value=2.6e-22 Score=220.80 Aligned_cols=68 Identities=35% Similarity=0.565 Sum_probs=65.1
Q ss_pred CCCCCCCCCCcccchHHHHHHHHc---CCchhhhhhhhhhhhccccchhhhccccCCCccCCccccCcccc
Q psy11112 512 TGRTPYNDVPLIYDRDIYNQLIQN---GIDPMLSQHIAHLFIRDTVSLFNEKVNQNDEIDTDHFEVPNSVV 579 (632)
Q Consensus 512 ~g~~~~ND~~lI~d~~~y~~L~~~---gid~~la~H~aHlFirDplvifse~i~qd~~~~~dhFEn~~s~~ 579 (632)
....+|||+++++|+++|++|+++ |||++||+||||||||||||||+|+|+|||+.++||||||||-.
T Consensus 374 ~~~~~yND~~~~~d~~i~~~L~~~~~~g~D~~LA~H~AHLFIRDPlvif~e~i~~dd~~~tdHFENiQSTN 444 (692)
T 3ig5_A 374 FFNRTYNDTNVPINEKVLGRLLENDKAPLDYDLAKHFAHLYIRDPVSTFEELLNQDNKTSSNHFENIQSTN 444 (692)
T ss_dssp TCCGGGCCSCCCCCHHHHHHHHSCSSCCCCHHHHHHHHHHTTSCCCCCBGGGSSCCTTTCCHHHHHHHTTC
T ss_pred cchHhhCCCCcCcCHHHHHHHHhccccCccHHHHHHHHHHhccCchhhhhhhhhccCcccccchhcccccc
Confidence 346799999999999999999999 99999999999999999999999999999999999999999964
No 3
>2gwd_A Glutamate cysteine ligase; disulfide bridges, glutathione biosynthesis, beta-hairpin, R regulation; HET: GLU; 2.09A {Brassica juncea} PDB: 2gwc_A*
Probab=99.61 E-value=2e-17 Score=174.57 Aligned_cols=165 Identities=20% Similarity=0.218 Sum_probs=126.5
Q ss_pred cccccccc--ccccccccccCChhhHhhhhhhcCCccchhcccccccccchhhhhcccchhhhhccccccccccceeecc
Q psy11112 73 DAMGFGMG--CCCLQVTFQACNISEAKTLYDQLTPLCPIMNGTYFIFHSELSVFYNSLRTERILYFIQNASPIFRGYLTD 150 (632)
Q Consensus 73 DAMGFGMG--ccCLQvTfQA~nI~EAR~LYDQL~pl~PImLA~~~~~~~~~~~~~~~~~~~~~~~~LSAAsPi~rG~LaD 150 (632)
..+|++|+ +||+||.+|..+.+++..+|+++.++.|+++| |||+||++.|..+.
T Consensus 167 g~~g~~mm~~~~g~qVhl~~~~~~~~~~~~~~~~~~~P~llA------------------------LsAnSPf~~G~~tg 222 (449)
T 2gwd_A 167 GSLGLDMMLRTCTVQVNLDFSSEADMIRKFRAGLALQPIATA------------------------LFANSPFTEGKPNG 222 (449)
T ss_dssp CSSHHHHHHHBCEEEEEECCSSHHHHHHHHHHHHHHHHHHHH------------------------HHCCBCEETTEECS
T ss_pred chhHHHHhhcceeeEEEecCCCHHHHHHHHHHHHHHHHHHHH------------------------HHhCCcccccCcCC
Confidence 56789999 99999999999999999999999999999999 99999999999877
Q ss_pred -cccc---cccccccccCCcccccccccCCCCCccccCCCCCccccc---cC---CC--CCCCCCCCCCCCCHHHHHHHH
Q psy11112 151 -VDCR---WNVISGSVDCRTREERGLEPLRKNRFVIPKSRYDSIDSY---LS---PE--HGEKYNDVPLIYDRDIYNQLI 218 (632)
Q Consensus 151 -~D~R---WnVIS~SVDdRT~eErg~~pL~~~~~~IpKSRYdSid~Y---is---~~--~~~~YNDi~~~~de~iy~~L~ 218 (632)
.++| |..+ .++|| |.-| -.|++...| +. .. .--..++..+..+...+..++
T Consensus 223 ~~S~R~~~w~~~---~~~r~----G~~p----------~~f~~~~~~e~yv~~l~~~~~~~v~~~g~~~~~~~~~f~~~l 285 (449)
T 2gwd_A 223 FLSMRSHIWTDT---DKDRT----GMLP----------FVFDDSFGFEQYVDYALDVPMYFAYRNGKYVDCTGMTFRQFL 285 (449)
T ss_dssp CSBHHHHHTTSS---CGGGC----SCCG----------GGGSTTCSHHHHHHHHHHSCEEEEEETTEEEEEEEECHHHHH
T ss_pred CcchHHHHHhhC---CCCcC----CCCC----------cccCCccCHHHHHHHHHcCCceEeecCCccccCCcchHHHhh
Confidence 7899 6654 44564 4322 133433332 22 11 001134444444556677888
Q ss_pred HcCCChhhhhhhhhhhhccccchhccccccCCCCCcccccccccCCCCcceecCCCCCCCCCceeeeeccCccCCchhhh
Q psy11112 219 QNGIDPMLSQHIAHLFIRDTVSLFNEKVNQNDEIDTDHFENIQSTNWQTMRFKPPPPNSSIGWRVEFRPCETQLTDFENA 298 (632)
Q Consensus 219 ~~GiD~~LA~H~AHLFIRDPlviF~E~i~qdd~~~tDHFENIQSTNWQtmRFKPPP~~s~iGWRVEFRpmEvQlTDFENA 298 (632)
+++++. ++.| .-+.+||++.+||.|+.||+|+ +||||.|++|.| .+++
T Consensus 286 ~~~l~~----------------~~~~------~p~~~d~~~~~st~~~~vRpk~---------~iE~R~~D~~p~-~~~~ 333 (449)
T 2gwd_A 286 AGKLPC----------------LPGE------LPTYNDWENHLTTIFPEVRLKR---------YMEMRGADGGPW-RRLC 333 (449)
T ss_dssp TTCCTT----------------STTC------CCCHHHHHHHHTTCCCSEEESS---------SEEEEEEECCCH-HHHH
T ss_pred hccccc----------------ccCC------CCCHHHHHhhhcccCcccCcCC---------ceEeecCCCCCc-HHHH
Confidence 877755 2332 3467899999999999999995 699999999999 9999
Q ss_pred HHHHHHHHHHHH
Q psy11112 299 AFVCFVVLLTRI 310 (632)
Q Consensus 299 Af~vFivLLtRa 310 (632)
|++.|++.|++.
T Consensus 334 a~aAl~~gL~~~ 345 (449)
T 2gwd_A 334 ALPAFWVGLLYD 345 (449)
T ss_dssp HHHHHHHHHHSS
T ss_pred HHHHHHHHHHhh
Confidence 999999988864
No 4
>1r8g_A Hypothetical protein YBDK; structural genomics, unknown function, carboxylate-amine ligase, structure 2 function project, S2F; 2.15A {Escherichia coli} SCOP: d.128.1.3 PDB: 1tt4_A
Probab=98.41 E-value=4.5e-07 Score=93.28 Aligned_cols=160 Identities=17% Similarity=0.120 Sum_probs=105.1
Q ss_pred cccccccccccccccCChhhHhhhhhhcCCccchhcccccccccchhhhhcccchhhhhccccccccccceeeccc-ccc
Q psy11112 76 GFGMGCCCLQVTFQACNISEAKTLYDQLTPLCPIMNGTYFIFHSELSVFYNSLRTERILYFIQNASPIFRGYLTDV-DCR 154 (632)
Q Consensus 76 GFGMGccCLQvTfQA~nI~EAR~LYDQL~pl~PImLA~~~~~~~~~~~~~~~~~~~~~~~~LSAAsPi~rG~LaD~-D~R 154 (632)
|=.|-+|.+||-|+..+-+++-.++..+..+.|+++| |+|+||++.|.-+.. ..|
T Consensus 127 ~~~~~i~g~hvhv~~~~~~~~~~~~~~~~~~~p~l~a------------------------L~anSPf~~G~~tg~~s~R 182 (372)
T 1r8g_A 127 IQQATVFGQHVHVGCASGDDAIYLLHGLSRFVPHFIA------------------------LSAASPYMQGTDTRFASSR 182 (372)
T ss_dssp GCSCCBCEEEEEEECSSHHHHHHHHHHHHTTHHHHHH------------------------HHCCBCEETTEECSCSBCG
T ss_pred HHhhceeeEEEEeCCCCHHHHHHHHHHHHHHHHHHHH------------------------HHhCCCcccCCCCCcHHHH
Confidence 4567799999999999999999999999999999999 999999999974322 222
Q ss_pred cccccccccCCcccccccccCCCCCccccCCCCCccccccCCCCCCCCCCCCCCCCHHHHHHHHHcCCChhhhhhhhhhh
Q psy11112 155 WNVISGSVDCRTREERGLEPLRKNRFVIPKSRYDSIDSYLSPEHGEKYNDVPLIYDRDIYNQLIQNGIDPMLSQHIAHLF 234 (632)
Q Consensus 155 WnVIS~SVDdRT~eErg~~pL~~~~~~IpKSRYdSid~Yis~~~~~~YNDi~~~~de~iy~~L~~~GiD~~LA~H~AHLF 234 (632)
-.+-... + -.| +| -+|++..-|.. ..+.+++.|+
T Consensus 183 ~~~~~~~-----p-~~g----------~~-~~f~~~~~y~~-----------------~~~~~l~~g~------------ 216 (372)
T 1r8g_A 183 PNIFSAF-----P-DNG----------PM-PWVSNWQQFEA-----------------LFRCLSYTTM------------ 216 (372)
T ss_dssp GGGGTTS-----T-TCS----------SC-CCCSSHHHHHH-----------------HHHHHTTSSS------------
T ss_pred HHHHHcC-----C-ccC----------CC-cccCCHHHHHH-----------------HHHHHHHCCC------------
Confidence 1111100 0 001 11 13444444432 1223444444
Q ss_pred hccccchhccccccCCCCCcccccccccCCCCcceecCCCCCCCCCceeeeeccCccCCchhhhHHHHHHHHHHHHHHhc
Q psy11112 235 IRDTVSLFNEKVNQNDEIDTDHFENIQSTNWQTMRFKPPPPNSSIGWRVEFRPCETQLTDFENAAFVCFVVLLTRIILSY 314 (632)
Q Consensus 235 IRDPlviF~E~i~qdd~~~tDHFENIQSTNWQtmRFKPPP~~s~iGWRVEFRpmEvQlTDFENAAf~vFivLLtRaILs~ 314 (632)
-...+|-|-.+|.|+- .| +||+|.+++|.|.-+-.|.+.|+..|....+.-
T Consensus 217 -----------------------~~~~~~~y~~vRpk~~-----~~-~IE~R~~D~~p~~~~~~a~aa~~~~l~~~~~~~ 267 (372)
T 1r8g_A 217 -----------------------IDSIKDLHWDIRPSPH-----FG-TVEVRVMDTPLTLSHAVNMAGLIQATAHWLLTE 267 (372)
T ss_dssp -----------------------CSSGGGCCCSEEEETT-----TT-EEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------cCcCCeeccccccCCC-----CC-ceEEeccCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 1334777999999873 23 899999999999777777777777777665332
Q ss_pred CC--ceeeccchhhhhHHHHhh
Q psy11112 315 NL--NFVIPISKVDENMKRAQK 334 (632)
Q Consensus 315 ~L--nfyIPISkVDENM~rAqk 334 (632)
.- ---.+...+.+|..+|.+
T Consensus 268 ~~~~~~~~~~~~~~~n~~~aar 289 (372)
T 1r8g_A 268 RPFKHQEKDYLLYKFNRFQACR 289 (372)
T ss_dssp CCCCCCGGGGTTHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH
Confidence 21 122345557788888765
No 5
>1va6_A Glutamate--cysteine ligase; glutathione homeostasis, beta barrel, peptide synthesis, transition state analogue; HET: P2S ADP P6G; 2.10A {Escherichia coli} SCOP: d.128.1.4 PDB: 1v4g_A* 2d32_A* 2d33_A*
Probab=88.61 E-value=0.12 Score=56.78 Aligned_cols=74 Identities=16% Similarity=0.142 Sum_probs=47.9
Q ss_pred cccCC--CCcceecCCCCCC----------CCCceeeeeccCccCCch--hhhHHHHHHHHHHHHHH-hcCCcee-eccc
Q psy11112 260 IQSTN--WQTMRFKPPPPNS----------SIGWRVEFRPCETQLTDF--ENAAFVCFVVLLTRIIL-SYNLNFV-IPIS 323 (632)
Q Consensus 260 IQSTN--WQtmRFKPPP~~s----------~iGWRVEFRpmEvQlTDF--ENAAf~vFivLLtRaIL-s~~Lnfy-IPIS 323 (632)
||+.| |-.+|.|+.+.+. .++. ||+|.|++..+.= ..++-+.|+=++..-.| +-...+- -++.
T Consensus 293 Lq~e~E~Y~~IRpk~~~~~ge~~~~aL~~~Gi~y-IEvR~~DvnPf~~~Gi~~~~~~fl~~fl~~~ll~~~~~~~~~~~~ 371 (518)
T 1va6_A 293 LQIENELYAPIRPKRVTRSGESPSDALLRGGIEY-IEVRSLDINPFSPIGVDEQQVRFLDLFMVWCALADAPEMSSSELA 371 (518)
T ss_dssp CSSGGGCCCSEEEECCCCTTCCHHHHHHHHCCCE-EEEEEEECCTTSTTSCCHHHHHHHHHHHHHHHHSCCCCCCHHHHH
T ss_pred ccccCeeeeccccCCCCCCCcCcHHHHHhCCCCe-EEEEeccCCCCccccccHHHHHHHHHHHHHHHhCCCcCCChHHHH
Confidence 44444 9999999976432 2553 9999999999888 77777777755554443 3222211 2244
Q ss_pred hhhhhHHHHhh
Q psy11112 324 KVDENMKRAQK 334 (632)
Q Consensus 324 kVDENM~rAqk 334 (632)
.+++|..+|.+
T Consensus 372 ~~~~N~~~va~ 382 (518)
T 1va6_A 372 CTRVNWNRVIL 382 (518)
T ss_dssp HTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 57788877765
No 6
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl cysteine ligase domain, ATP-grAsp domain, HYB enzyme; 2.95A {Streptococcus agalactiae serogroup V}
Probab=75.58 E-value=2.1 Score=48.66 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=23.4
Q ss_pred CCCcceecCCCCCC---CCCc-eeeeeccCccC----CchhhhHH
Q psy11112 264 NWQTMRFKPPPPNS---SIGW-RVEFRPCETQL----TDFENAAF 300 (632)
Q Consensus 264 NWQtmRFKPPP~~s---~iGW-RVEFRpmEvQl----TDFENAAf 300 (632)
-|=.+|.||--|-. .-|. .||+|.|+++. +==++.+.
T Consensus 256 ~y~~iRpk~~~p~~~l~~~Gi~yiE~R~~D~~p~~~~GI~~~~~~ 300 (750)
T 3ln6_A 256 FYSPVRLRGSKACRNYLEKGITYLEFRTFDLNPFSPIGITQETVD 300 (750)
T ss_dssp CCCSEEEESCSSTTTTTTTCCCEEEECCCCCCTTSTTSCCHHHHH
T ss_pred eeEeecCCCCCCchhHhhCCCCeEEEEeecCCCCCcccccHHHHH
Confidence 38899999743321 2233 49999999965 33445544
No 7
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=51.56 E-value=26 Score=40.04 Aligned_cols=43 Identities=19% Similarity=0.163 Sum_probs=25.8
Q ss_pred CCCcceecCCCCC-----CCCCceeeeeccCc----cCCchhhhHHHHHHHHH
Q psy11112 264 NWQTMRFKPPPPN-----SSIGWRVEFRPCET----QLTDFENAAFVCFVVLL 307 (632)
Q Consensus 264 NWQtmRFKPPP~~-----s~iGWRVEFRpmEv----QlTDFENAAf~vFivLL 307 (632)
-|-.+|.||--|- ..|+ +||+|.|++ -+.=-++.+.-+=+.||
T Consensus 261 ~y~~iRpk~~~p~~~l~~~Gi~-yiEvR~~D~~P~~~~GI~~~~~~fl~lfll 312 (757)
T 3ln7_A 261 FYSNVRLRGAKKAREFLTTGIQ-YLEFRLFDLNPFEIYGISLKDAKFIHVFAL 312 (757)
T ss_dssp CCCSEEEESCSSGGGHHHHCCC-EEEECCCCCCTTSTTSSCHHHHHHHHHHHH
T ss_pred eeeeecCCCCCChhhHHhCCCC-EEEEEeccCCCCCcccccHHHHHHHHHHHH
Confidence 3889999974321 1232 599999998 44444555543333333
No 8
>3hyb_A RBCX protein; rubisco, protein complex assembly, chaperone; HET: SO4; 2.30A {Anabaena SP} PDB: 2wvw_I 2peo_A* 3rg6_C
Probab=27.84 E-value=25 Score=33.45 Aligned_cols=43 Identities=28% Similarity=0.373 Sum_probs=33.2
Q ss_pred CChhHHHHHHHHHHHHhhhhc-----CccchhHHHHHhhhccCCCCCCCCc
Q psy11112 449 VDTDTHCTIQQYLKLIQNRAS-----GEILTTASWIRSFVTSHPAYKQDSV 494 (632)
Q Consensus 449 vd~~t~~~i~~YL~lI~~RAs-----Gel~T~A~wiR~FV~~HPdYKqDSV 494 (632)
|..||...|..||.+..-|.- ..=|..|.|+.+|+. ||- +|+.
T Consensus 26 iakDtak~L~~YfTYqAvr~VLaQL~EtNP~~y~wL~~F~s-~~i--qDGe 73 (155)
T 3hyb_A 26 IAKDTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSA-GKV--QDGE 73 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-TCC--SSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHc-CCc--ccHH
Confidence 356788899999999886653 234788999999999 776 6654
No 9
>2peq_A ORF134; helix bundle, protein complex assembly, chaperone; 1.90A {Synechococcus SP} SCOP: a.280.1.1 PDB: 2pem_A 2pen_A 2z44_A 2z45_A 2z46_A 2pek_A 2pej_A 2pei_A
Probab=27.58 E-value=30 Score=32.13 Aligned_cols=43 Identities=33% Similarity=0.448 Sum_probs=32.5
Q ss_pred ChhHHHHHHHHHHHHhhhh-----cCccchhHHHHHhhhccCCCCCCCCc
Q psy11112 450 DTDTHCTIQQYLKLIQNRA-----SGEILTTASWIRSFVTSHPAYKQDSV 494 (632)
Q Consensus 450 d~~t~~~i~~YL~lI~~RA-----sGel~T~A~wiR~FV~~HPdYKqDSV 494 (632)
..++...|..|+.++.-|. .+-=|..|.|+++|+.+||- +|.-
T Consensus 7 ~~daAk~L~~yfTy~AvR~Vl~QL~e~np~~~~wL~~F~~~~~l--~DGd 54 (134)
T 2peq_A 7 AKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPI--QESD 54 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHSCT--TSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhcCCC--ccHH
Confidence 3467788889998887664 23447889999999999995 5653
No 10
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=23.49 E-value=44 Score=28.28 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=24.9
Q ss_pred HHHHHHHcCCChhhhhhhhhhhhccccc
Q psy11112 213 IYNQLIQNGIDPMLSQHIAHLFIRDTVS 240 (632)
Q Consensus 213 iy~~L~~~GiD~~LA~H~AHLFIRDPlv 240 (632)
=++..+++|||+.+|+-.|+.|.|+-+.
T Consensus 5 Wf~FFl~aGv~~~~c~rYA~~F~~~ri~ 32 (72)
T 3idw_A 5 WFEFFLNCGVDVSNCQRYTINFDREQLT 32 (72)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHccCC
Confidence 4678899999999999999999998765
No 11
>3ka1_A RBCX protein; chaperone, helix bundle, rubisco assembly; 1.71A {Thermosynechococcus elongatus bp-1} PDB: 3q20_A
Probab=23.33 E-value=32 Score=31.73 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=34.0
Q ss_pred ChhHHHHHHHHHHHHhhhhc-----CccchhHHHHHhhhccCCCCCCCCc
Q psy11112 450 DTDTHCTIQQYLKLIQNRAS-----GEILTTASWIRSFVTSHPAYKQDSV 494 (632)
Q Consensus 450 d~~t~~~i~~YL~lI~~RAs-----Gel~T~A~wiR~FV~~HPdYKqDSV 494 (632)
..||...|..||.+..-|.- ..=|..|.|+.+|+..||- +|+.
T Consensus 7 a~Dtak~L~~yfTY~Avr~Vl~QL~E~np~~~~wL~~F~~~~~~--~DGe 54 (126)
T 3ka1_A 7 AKQTTKTLISYLTYQAVRTVIGQLAETDPPRSLWLHQFTSQESI--QDGE 54 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCS--SCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCC--ccHH
Confidence 45788899999999886653 2347889999999999987 6654
No 12
>2py8_A Hypothetical protein RBCX; all helical fold, chaperone; HET: PE4; 2.45A {Synechocystis SP} SCOP: a.280.1.1
Probab=20.89 E-value=48 Score=31.24 Aligned_cols=42 Identities=21% Similarity=0.325 Sum_probs=32.3
Q ss_pred ChhHHHHHHHHHHHHhhhh-----cCccchhHHHHHhhhccCCCCCCCC
Q psy11112 450 DTDTHCTIQQYLKLIQNRA-----SGEILTTASWIRSFVTSHPAYKQDS 493 (632)
Q Consensus 450 d~~t~~~i~~YL~lI~~RA-----sGel~T~A~wiR~FV~~HPdYKqDS 493 (632)
..|+...|..||.+..-|. +|.=|..+.|+++|+..||- +|.
T Consensus 7 ~kdaAk~L~~yfTy~AvR~VL~QL~EtNP~~y~wL~~Fl~~npl--~DG 53 (147)
T 2py8_A 7 AQATVKVLQSYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSI--QNG 53 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHSCC--SSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhcCCC--ccH
Confidence 3577788889988877554 23447889999999999997 665
Done!