RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11112
(632 letters)
>gnl|CDD|217355 pfam03074, GCS, Glutamate-cysteine ligase. This family represents
the catalytic subunit of glutamate-cysteine ligase (E.C.
6.3.2.2), also known as gamma-glutamylcysteine
synthetase (GCS). This enzyme catalyzes the rate
limiting step in the biosynthesis of glutathione. The
eukaryotic enzyme is a dimer of a heavy chain and a
light chain with all the catalytic activity exhibited by
the heavy chain (this family).
Length = 365
Score = 545 bits (1407), Expect = 0.0
Identities = 232/443 (52%), Positives = 279/443 (62%), Gaps = 82/443 (18%)
Query: 70 VYLDAMGFGMGCCCLQVTFQACNISEAKTLYDQLTPLCPIMNGTYFIFHSELSVFYNSLR 129
+Y+D MGFGMGCCCLQVTFQA NI EA+ LYDQL P+CPI
Sbjct: 1 IYMDCMGFGMGCCCLQVTFQAPNIDEARYLYDQLAPICPIFLA----------------- 43
Query: 130 TERILYFIQNASPIFRGYLTDVDCRWNVISGSVDCRTREERGLEPLRKNRFVIPKSRYDS 189
+ A+P FRGYL D D RW VIS SVD RTREERGL PL+ N+F I KSRYDS
Sbjct: 44 -------LSAATPFFRGYLADQDVRWLVISASVDDRTREERGLVPLKNNKFHISKSRYDS 96
Query: 190 IDSYLSP--EHGEKYNDVPLIYDRDIYNQLIQNGIDPMLSQHIAHLFIRDTVSLFNEKVN 247
ID Y+S + E+YND+ L + IY QL+ GID L++HIAHLFIRD + +F E ++
Sbjct: 97 IDVYISKCKPNLEEYNDIDLPINEKIYEQLLDEGIDHRLAKHIAHLFIRDPLVIFEEMID 156
Query: 248 QNDEIDTDHFENIQSTNWQTMRFKPPPPNSSIGWRVEFRPCETQLTDFENAAFVCFVVLL 307
Q+D ++HFENIQSTNWQTMRFKPPPP+S IGWRVEFRP E QLTDFENAA+ FVVLL
Sbjct: 157 QDDATSSEHFENIQSTNWQTMRFKPPPPDSDIGWRVEFRPMEVQLTDFENAAYSVFVVLL 216
Query: 308 TRIILSYNLNFVIPISKVDENMKRAQKRDALNREKFWFRRDCAIKKTGGEDSSIPGDSQQ 367
TR ILS+NLNF IPISKVDENMKRA RDA+ ++KF+FR+D K
Sbjct: 217 TRAILSFNLNFYIPISKVDENMKRAHNRDAVLQQKFYFRKDIFKGKC------------- 263
Query: 368 SRPPMDGTPETNPLYMNGNSVYSGSDEAKYNGATNNNNNENIKQDGGEEYVEMTINEIIN 427
T + +EA+ +I+EIIN
Sbjct: 264 -------TTSS-------------DEEAEM-----------------------SIDEIIN 280
Query: 428 GKEGVFPGLAPLISRYLISMDVDTDTHCTIQQYLKLIQNRASGEILTTASWIRSFVTSHP 487
GKEG FPGL PL+ YL S +VD DT C+I+ YLK I RASGE+ T A W+R+FVT+HP
Sbjct: 281 GKEGGFPGLIPLVRSYLESENVDVDTRCSIENYLKFISKRASGELPTAARWMRNFVTTHP 340
Query: 488 AYKQDSVVSEEITYDLLLKSHHI 510
YK DSV+++EI YDLLLK I
Sbjct: 341 DYKHDSVITDEINYDLLLKCDQI 363
Score = 87.1 bits (216), Expect = 2e-18
Identities = 29/61 (47%), Positives = 41/61 (67%)
Query: 517 YNDVPLIYDRDIYNQLIQNGIDPMLSQHIAHLFIRDTVSLFNEKVNQNDEIDTDHFEVPN 576
YND+ L + IY QL+ GID L++HIAHLFIRD + +F E ++Q+D ++HFE
Sbjct: 111 YNDIDLPINEKIYEQLLDEGIDHRLAKHIAHLFIRDPLVIFEEMIDQDDATSSEHFENIQ 170
Query: 577 S 577
S
Sbjct: 171 S 171
>gnl|CDD|221548 pfam12361, DBP, Duffy-antigen binding protein. This family of
proteins is found in eukaryotes. Proteins in this family
are typically between 449 and 1061 amino acids in
length. The family is found in association with
pfam05424. There are two conserved sequence motifs:
NKNGG and QKHDF. This family is part of the
Duffy-antigen binding protein of Plasmodium spp. This
protein is an antigen on these parasites which enable
them to invade erythrocytes.
Length = 318
Score = 30.9 bits (69), Expect = 2.0
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 352 KKTGGEDSSIPGDSQQSRPPMDGTPETNPLYMNGNSVYSGSDEAKYNGATNNNNNENIKQ 411
K+ EDSS D PE N N GS + GAT + E+++
Sbjct: 226 KRAENEDSSAEKDGATVAGGSTNDPEQNVSVDTDNGNVPGSGNKQNEGATALSGAESLES 285
Query: 412 DGGEEYVEMTINEIINGKE 430
+ E V TI+ +G E
Sbjct: 286 N---ESVHKTIDNTTHGLE 301
>gnl|CDD|225927 COG3392, COG3392, Adenine-specific DNA methylase [DNA replication,
recombination, and repair].
Length = 330
Score = 30.6 bits (69), Expect = 2.2
Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 17/129 (13%)
Query: 391 GSDEAKYNGATNNNNNENIKQDGGEEYVEMTINEIINGKEGVFPGLAPLISRYLISMDVD 450
G +Y TN + ++ + + +E I N +A LI S D
Sbjct: 102 GGSSRQYFSETNAQKIDAMRLEIEKLKLE---QNIDNHLYYFL--IASLI----YSADKV 152
Query: 451 TDTHCTIQQYLKLIQNRASGEILTTASWIRSFVTSHPAYKQD-SVVSEEITYDLLLKSHH 509
+T +LK ++ A E+ + ++ Y++D + + ++I+ D+L
Sbjct: 153 ANTAGVYGAFLKKLKKSAEKELELKLPDFDLNLNANKVYQEDANELIKKISGDILYLD-- 210
Query: 510 IQTGRTPYN 518
PYN
Sbjct: 211 -----PPYN 214
>gnl|CDD|178071 PLN02452, PLN02452, phosphoserine transaminase.
Length = 365
Score = 30.0 bits (68), Expect = 3.9
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 4/49 (8%)
Query: 382 YMNGNSVYSGSDEAKYNGATNNNNNENIKQDGGEEYVEMTINEIINGKE 430
Y N + SG DE T + + ++V + NE I+G E
Sbjct: 117 YCKTNVIASGKDE----KYTKIPSVSEWELTPDAKFVHICANETIHGVE 161
>gnl|CDD|225635 COG3093, VapI, Plasmid maintenance system antidote protein [General
function prediction only].
Length = 104
Score = 28.1 bits (63), Expect = 4.8
Identities = 7/24 (29%), Positives = 15/24 (62%)
Query: 421 TINEIINGKEGVFPGLAPLISRYL 444
TI+E+ING+ + +A +++
Sbjct: 39 TISELINGRRAITADMALRLAKVF 62
>gnl|CDD|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC)
epsilon. A single C2 domain is found in PKC epsilon.
The PKC family of serine/threonine kinases regulates
apoptosis, proliferation, migration, motility,
chemo-resistance, and differentiation. There are 3
groups: group 1 (alpha, betaI, beta II, gamma) which
require phospholipids and calcium, group 2 (delta,
epsilon, theta, eta) which do not require calcium for
activation, and group 3 (xi, iota/lambda) which are
atypical and can be activated in the absence of
diacylglycerol and calcium. C2 domains fold into an
8-standed beta-sandwich that can adopt 2 structural
arrangements: Type I and Type II, distinguished by a
circular permutation involving their N- and C-terminal
beta strands. Many C2 domains are Ca2+-dependent
membrane-targeting modules that bind a wide variety of
substances including bind phospholipids, inositol
polyphosphates, and intracellular proteins. Most C2
domain proteins are either signal transduction enzymes
that contain a single C2 domain, such as protein kinase
C, or membrane trafficking proteins which contain at
least two C2 domains, such as synaptotagmin 1. However,
there are a few exceptions to this including RIM
isoforms and some splice variants of piccolo/aczonin and
intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. Members here have a type-II
topology.
Length = 132
Score = 28.4 bits (64), Expect = 4.9
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 157 VISGSVDCRTREERGLEPLRKN-RFVIPKSRYDSIDSYLS 195
+ +G++ + E L+P + R +PK +D Y+S
Sbjct: 1 MFTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVS 40
>gnl|CDD|221352 pfam11975, Glyco_hydro_4C, Family 4 glycosyl hydrolase C-terminal
domain.
Length = 231
Score = 29.3 bits (66), Expect = 5.9
Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 19/118 (16%)
Query: 327 ENMKRAQKRDALNR------EKFWFRRDCAIKKTGGEDSSIPGDSQQSRPPMDGTPETNP 380
++ RA+ A ++ I+ GE S I +++ +D +
Sbjct: 54 DDFVRAENVMAFGTLLPESYLHYYEYTKWFIEPENGEYSKIITRAKE---VLDKVEKR-- 108
Query: 381 LYMNGNSVYSGSDEAKYNGATNNNNNENIKQDGGEEYVEMTINEIINGKEGVFPGLAP 438
++ Y + + I G Y + I I N KE VF P
Sbjct: 109 IFEQLEKWYKEPELI--------VKPKKIDDKGSRYYGDAAIAAIYNDKEAVFYVNVP 158
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.413
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 32,262,064
Number of extensions: 3154556
Number of successful extensions: 2426
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2424
Number of HSP's successfully gapped: 14
Length of query: 632
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 529
Effective length of database: 6,369,140
Effective search space: 3369275060
Effective search space used: 3369275060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.2 bits)